Citrus Sinensis ID: 014353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MASVQLQRQGSSPRQQDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV
Secondary Structure (PSIPRED)
cccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHccccccEEEcccccccccccccEEEEEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccEEEEcccccHHHHHHHHHHccccccEEEEcccccEEEEEcHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccccEEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHcccEEEEEEcccccEEEEEEHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEHHccccccccccccccccccccEHHcHHHcccccccHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHccccEEEEEccccccccccHccEEcHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHccHHHHcHcccccccHHHccccHHHHHHHHccccccEHHHHHHHccccccEEcccccHHHHHHHHHHHccccEcEEEccccccEEEEEcHHHHHHHHHHHHcccccHHHHHccHHHccccccccccEEEEccccHHHHHHHHHHHccccEEEEEcccccEEEEEEEHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccEEEEccccHHHHHHHHHHHHcccEEEEEcccccEEEEEEHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masvqlqrqgssprqqdsprspeaqlgmkvedlwdvlepqlspteklnacfesipveafppppsqvieiksdTSLAEAVEILAQHRilsapvvdvdapedaswiDRYIGIVEFAGIAVWILhqseppsprssspssALAAAVNGMSKAALFkdlgpesasmtsgnffealttsefykntkvrdiagsfrwapflalqKSNSFLTMLLLLSKykmksipvvdlgegtidniiTQSSVIHMLAECAGLEWFESWGKkklseiglpimsanhivkvyedepVLQAFKLMRRKkiggipvvekggnkavgnisLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEehhhedspllsgmvtcsrNHTIKELIHLLDSKKIHRIYVVDfngnlegvITLRDIISRLvheppgyfgdffdgvlplpensrv
Flexible Loop (DISEMBL)
masvqlqrqgssprqqdsprspeAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQhrilsapvvdvdAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIggipvvekggnkavgnisLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYfgdffdgvlplpensrv
Low Complexity Region (SEG)
MASVQLqrqgssprqqdsprspEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQseppsprssspssalaaaVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQksnsfltmllllskykmksIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV
Disordered region (IsUnstruct)
*****************************VEDLWDVLEPQL***EKLNACFESIPVEAF******VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILH*****************************************GNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLP*******
Disordered Region (DISOPRED)
**********************************DVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY*******DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPEN***
Disordered Region (DISEMBL)
***********************AQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQ*****************AVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV
Disordered Region (DISPRO)
*************************LGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFK****E*****SGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVQLQRQGSSPRQQDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
Q8LBB2	424	SNF1-related protein kina	yes	no	0.978	0.983	0.712	1e-177
Q9CAR3	447	SNF1-related protein kina	no	no	0.847	0.807	0.379	1e-73
Q91WG5	566	5'-AMP-activated protein	yes	no	0.476	0.358	0.251	8e-12
Q8BGM7	489	5'-AMP-activated protein	no	no	0.485	0.423	0.244	1e-11
Q9MYP4	514	5'-AMP-activated protein	yes	no	0.485	0.402	0.248	2e-11
Q9UGI9	489	5'-AMP-activated protein	yes	no	0.485	0.423	0.235	4e-11
Q5R4S0	524	5'-AMP-activated protein	no	no	0.476	0.387	0.242	1e-10
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.476	0.356	0.242	1e-10
Q2LL38	497	5'-AMP-activated protein	yes	no	0.471	0.404	0.237	2e-10
Q9P869	328	Nuclear protein SNF4 OS=K	yes	no	0.392	0.509	0.253	8e-08

>sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2

 Score =  619 bits (1597), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/424 (71%), Positives = 351/424 (82%), Gaps = 7/424 (1%)

Query: 4   VQLQRQGSSPRQQDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFP-PP 62
           +++ R  S   + D   SPEA+LGM+VEDLWD  +PQLSP EKLNACFESIPV AFP   
Sbjct: 7   IKIMRSESLGHRSDV-SSPEAKLGMRVEDLWDEQKPQLSPNEKLNACFESIPVSAFPLSS 65

Query: 63  PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILH 122
            SQ IEI+SDTSLAEAV+ L++ ++LSAPVVDVDAPEDASWIDRYIGIVEF GI VW+LH
Sbjct: 66  DSQDIEIRSDTSLAEAVQTLSKFKVLSAPVVDVDAPEDASWIDRYIGIVEFPGIVVWLLH 125

Query: 123 QSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVR 182
           Q EPPSPRS +      AA NG S       L    +++TSGNFFE LT+SE YKNTKVR
Sbjct: 126 QLEPPSPRSPA-----VAASNGFSHDFTTDVLDNGDSAVTSGNFFEVLTSSELYKNTKVR 180

Query: 183 DIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242
           DI+G+FRWAPFLALQK NSFLTMLLLLSKYKMKSIPVVDLG   I+NIITQS VIHMLAE
Sbjct: 181 DISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGVIHMLAE 240

Query: 243 CAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGN 302
           CAGL WFE WG K LSE+GLPIMS +HI+K+YEDEPVLQAFKLMRRK+IGGIPV+E+   
Sbjct: 241 CAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIERNSE 300

Query: 303 KAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRN 362
           K VGNISLRD+QFLLTAPEIYHDYRSIT KNFL +VR+++E+     +P++SG++ C++N
Sbjct: 301 KPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKN 360

Query: 363 HTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPE 422
           HT+KELI +LD++KIHRIYVVD  GNLEG+ITLRDII+RLVHEP GYFGDFFDGV+PLPE
Sbjct: 361 HTLKELILMLDAEKIHRIYVVDDFGNLEGLITLRDIIARLVHEPSGYFGDFFDGVMPLPE 420

Query: 423 NSRV 426
           N RV
Sbjct: 421 NYRV 424

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1

 Score =  277 bits (708), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/401 (37%), Positives = 234/401 (58%), Gaps = 40/401 (9%)

Query: 45  EKLNACFESIPVEAFPP-PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASW 103
           E LN+ F  IPV +FP  P  +VIEI+++T ++EAV+IL+  +ILSAPV++ D      W
Sbjct: 38  ETLNSAFAGIPVSSFPQVPGGRVIEIQAETPVSEAVKILSDSKILSAPVINTDHESSLDW 97

Query: 104 IDRYIGIVEFAGIAVWILHQSEPPS------------------------------PRSSS 133
            +RY+GI++++ I +W+L  +E  +                              P +++
Sbjct: 98  RERYLGIIDYSSIILWVLESAELAAIALSATSATAAGVGAGAVGALGVAALGMTGPVAAA 157

Query: 134 PSSALAAAVNGMSKAALFKDLG---PESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRW 190
             +A A         A  + +G   P +A     +F+E +   E +K+T VR I  SFRW
Sbjct: 158 GLAAAAVGAAVAGGVAAERGIGKDAPTAADKLGKDFYEVILQEEPFKSTTVRTILKSFRW 217

Query: 191 APFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE 250
           APFL +   +S L+++LLLSKY+++++PV+  GE  I N +TQS+V+H L  C G +WF+
Sbjct: 218 APFLPVSTESSMLSVMLLLSKYRLRNVPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFD 277

Query: 251 SWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISL 310
                 +S++GLP MS N ++ +  +E +L+AFK MR   IGG+PVVE    K VGNIS+
Sbjct: 278 HISALPISDLGLPFMSPNEVISIESEELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISM 337

Query: 311 RDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIH 370
           RDI++LL  PE++ ++R +T K+F T +    EE+      L    +TC  + T+  +I+
Sbjct: 338 RDIRYLLLQPEVFSNFRQLTVKSFATKIATAGEEYG-----LAIPAITCRPDSTLGSVIN 392

Query: 371 LLDSKKIHRIYVVDFNGN-LEGVITLRDIISRLVHEPPGYF 410
            L S+ +HR+YV   + N L GVITLRD+IS  V EPP YF
Sbjct: 393 SLASRSVHRVYVAAGDENELYGVITLRDVISCFVSEPPNYF 433

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.

Arabidopsis thaliana (taxid: 3702)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 16/219 (7%)

Query: 190 WAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF 249
           + P + +    S    +  L K K+  +PV+D   G    I+T   ++  L         
Sbjct: 355 FKPLVNISPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPK 414

Query: 250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNIS 309
            ++ K+ L E+G  I + ++I  ++ D P+++A  +   ++I  +PVV++ G K V   S
Sbjct: 415 PAFMKQNLDELG--IGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESG-KVVDIYS 471

Query: 310 LRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELI 369
             D+   L A + Y++   IT    L    +Y E           G+V CS+  T++ ++
Sbjct: 472 KFDV-INLAAEKTYNNL-DITVTQALQHRSQYFE-----------GVVKCSKLETLETIV 518

Query: 370 HLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
             +   ++HR+ VV+   ++ G+I+L DI+  L+  P G
Sbjct: 519 DRIVRAEVHRLVVVNEADSIVGIISLSDILQALILTPAG 557

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q8BGM7|AAKG3_MOUSE 5'-AMP-activated protein kinase subunit gamma-3 OS=Mus musculus GN=Prkag3 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 106/225 (47%), Gaps = 18/225 (8%)

Query: 184 IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243
           + G F+  P +++  ++S    +  L K ++  +PV+D   GT+  I+T   ++  L   
Sbjct: 277 LQGCFK--PLVSISPNDSLFEAVYALIKNRIHRLPVLDPVSGTVLYILTHKRLLKFLHIF 334

Query: 244 AGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNK 303
             L    S+  + + ++G  I +   +  V E  PVL A  +   +++  +PVV + G +
Sbjct: 335 GALLPRPSFLCRTIQDLG--IGTFRDLAVVLETAPVLTALDIFVDRRVSALPVVNESG-Q 391

Query: 304 AVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNH 363
            VG  S  D+  L       H   S+              E   + +  L G+++C  + 
Sbjct: 392 VVGLYSRFDVIHLAAQQTYNHLDMSVG-------------EALRQRTLCLEGVLSCQPHE 438

Query: 364 TIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
           ++ E+I  +  +++HR+ +VD   +L GV++L DI+  LV  P G
Sbjct: 439 SLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLSPAG 483

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 110/225 (48%), Gaps = 18/225 (8%)

Query: 184 IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243
           + G F+  P +++  ++S    +  L K ++  +PV+D   G + +I+T   ++  L   
Sbjct: 302 LQGCFK--PLVSISPNDSLFEAVYALIKNRIHRLPVLDPVSGAVLHILTHKRLLKFLHIF 359

Query: 244 AGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNK 303
             L    S+  + + ++G  I +   +  V E  P+L A  +   +++  +PVV + G +
Sbjct: 360 GTLLPRPSFLYRTIQDLG--IGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNETG-Q 416

Query: 304 AVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNH 363
            VG  S  D+   L A + Y+        N   A+R+         +  L G+++C  + 
Sbjct: 417 VVGLYSRFDV-IHLAAQQTYNHLD----MNVGEALRQR--------TLCLEGVLSCQPHE 463

Query: 364 TIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
           T+ E+I  +  +++HR+ +VD   +L GV++L DI+  LV  P G
Sbjct: 464 TLGEVIDRIVREQVHRLVLVDETQHLLGVVSLSDILQALVLSPAG 508

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=1 SV=3

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 106/225 (47%), Gaps = 18/225 (8%)

Query: 184 IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243
           + G F+  P +++  ++S    +  L K ++  +PV+D   G + +I+T   ++  L   
Sbjct: 277 LQGCFK--PLVSISPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIF 334

Query: 244 AGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNK 303
             L    S+  + + ++G  I +   +  V E  P+L A  +   +++  +PVV + G +
Sbjct: 335 GSLLPRPSFLYRTIQDLG--IGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNECG-Q 391

Query: 304 AVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNH 363
            VG  S  D+  L       H   S+              E   + +  L G+++C  + 
Sbjct: 392 VVGLYSRFDVIHLAAQQTYNHLDMSVG-------------EALRQRTLCLEGVLSCQPHE 438

Query: 364 TIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
           ++ E+I  +  +++HR+ +VD   +L GV++L DI+  LV  P G
Sbjct: 439 SLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLSPAG 483

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 16/219 (7%)

Query: 190 WAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF 249
           + P + +    S L  +  L K K+  +PV+D   G    I+T   ++  L         
Sbjct: 313 FKPLVNISPDASLLDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPK 372

Query: 250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNIS 309
            ++ K+ L E+G  I + ++I  ++ D P+++A  +   ++I  +PVV++ G K V   S
Sbjct: 373 PAFMKQNLDELG--IGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESG-KVVDIYS 429

Query: 310 LRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELI 369
             D+   L A + Y++   IT    L    +Y E           G+V C++   ++ ++
Sbjct: 430 KFDV-INLAAEKTYNNL-DITVTQALQHRSQYFE-----------GVVKCNKLEILETIV 476

Query: 370 HLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
             +   ++HR+ V +   ++ G+I+L DI+  L+  P G
Sbjct: 477 DRIVRAEVHRLVVANEADSIVGIISLSDILQALILTPAG 515

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 16/219 (7%)

Query: 190 WAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF 249
           + P + +    S    +  L K K+  +PV+D   G    I+T   ++  L         
Sbjct: 358 FKPLVNISPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPK 417

Query: 250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNIS 309
            ++ K+ L E+G  I + ++I  ++ D P+++A  +   ++I  +PVV++ G K V   S
Sbjct: 418 PAFMKQNLDELG--IGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESG-KVVDIYS 474

Query: 310 LRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELI 369
             D+   L A + Y++   IT    L    +Y E           G+V C++   ++ ++
Sbjct: 475 KFDV-INLAAEKTYNNL-DITVTQALQHRSQYFE-----------GVVKCNKLEILETIV 521

Query: 370 HLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
             +   ++HR+ VV+   ++ G+I+L DI+  L+  P G
Sbjct: 522 DRIVRAEVHRLVVVNEADSIVGIISLSDILQALILTPAG 560

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit gamma-3 OS=Bos taurus GN=PRKAG3 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 113/232 (48%), Gaps = 31/232 (13%)

Query: 184 IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243
           + G F+  P +++  S+S    +  L K ++  +PV+D   G + +I+T   ++  L   
Sbjct: 284 LQGCFK--PLVSISPSDSLFEAVYTLIKNRIHRLPVLDPVSGAVLHILTHKRLLKFL--- 338

Query: 244 AGLEWFE-------SWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPV 296
                F+       S+  + + ++G  I +   +  V E  P+L A  +   +++  +PV
Sbjct: 339 ---HIFQRTLLPRPSFLYRTIQDLG--IGTFRDLAVVLETAPILTALDIFVDRRVSALPV 393

Query: 297 VEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM 356
           + + G + VG  S  D+  L  A +  +++  I+      A+R+         +  L G+
Sbjct: 394 INEAG-QVVGLYSRFDVIHL--AAQQTYNHLDISVGE---ALRRR--------TLCLEGV 439

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
           ++C  + T+ E+I  +  +++HR+ +VD   +L GV++L DI+  LV  P G
Sbjct: 440 LSCQPHETLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLSPAG 491

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q9P869|SNF4_KLULA Nuclear protein SNF4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SNF4 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 26/193 (13%)

Query: 213 KMKSIPVVDLGEGT----IDNIITQSSVIHMLA-ECAGLEWFESWGKKKLSEIGLPIMSA 267
           + + IP++D  E T    + +++TQ  ++  +A  C  + +     K+ L E  L I+S 
Sbjct: 148 RSRRIPLIDQDEETQREIVVSVLTQYRILKFVALNCKEIRYL----KRPLRE--LDIIST 201

Query: 268 NHIVKVYEDEPVLQAFKLMRRKK-IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY 326
           N+I+      PV+   +L+     +  +P+V++ G K V      D+  L+    IY+D 
Sbjct: 202 NNIMSCQMSTPVIDVIQLLTLAGGVSSVPIVDEQG-KLVNVYEAVDVLGLIKGG-IYNDL 259

Query: 327 RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN 386
                +  +            +D     G+ TC+ N  +  ++  +   ++HR +VVD N
Sbjct: 260 SLSVGEALM---------RRSDD---FEGVFTCTENDKLSSILDTVRKSRVHRFFVVDSN 307

Query: 387 GNLEGVITLRDII 399
           G L GV+TL DI+
Sbjct: 308 GFLTGVLTLSDIL 320

This protein causes expression of glucose-repressible genes upon glucose deprivation. It interacts and has functional relationship to the protein-kinase SNF1.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
255540259	459	AMP-activated protein kinase, gamma regu	0.997	0.925	0.789	0.0
224133948	426	predicted protein [Populus trichocarpa]	0.962	0.962	0.817	0.0
224119660	429	predicted protein [Populus trichocarpa]	0.997	0.990	0.795	0.0
449440558	414	PREDICTED: SNF1-related protein kinase r	0.960	0.987	0.791	0.0
356508802	411	PREDICTED: SNF1-related protein kinase r	0.953	0.987	0.766	0.0
356516559	436	PREDICTED: SNF1-related protein kinase r	0.953	0.931	0.764	0.0
356516561	418	PREDICTED: SNF1-related protein kinase r	0.953	0.971	0.749	0.0
147770676	529	hypothetical protein VITISV_010814 [Viti	0.962	0.775	0.732	0.0
225456307	430	PREDICTED: SNF1-related protein kinase r	0.962	0.953	0.732	0.0
297734412	421	unnamed protein product [Vitis vinifera]	0.950	0.961	0.740	0.0

>gi|255540259|ref|XP_002511194.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223550309|gb|EEF51796.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/438 (78%), Positives = 379/438 (86%), Gaps = 13/438 (2%)

Query: 1   MASVQLQRQGSSPR-----------QQDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNA 49
           MASVQ+ R+    +              SPRSPEA+LGMKVEDLWDV EPQLSPTEKLNA
Sbjct: 23  MASVQMMRERDDDQVVMKMKMKDHESNQSPRSPEARLGMKVEDLWDVQEPQLSPTEKLNA 82

Query: 50  CFESIPVEAFP-PPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYI 108
           CFESIPV AFP  P SQV+EIKSDTSLAEAV+ILA H+ILSAPVVDVDAPEDA+W+DRY+
Sbjct: 83  CFESIPVSAFPHAPSSQVVEIKSDTSLAEAVKILADHKILSAPVVDVDAPEDATWMDRYL 142

Query: 109 GIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFE 168
           G+VEFAGIAVWILHQSEPPSPRS +  +ALA A NG++ AA    LGPE AS TSGNFFE
Sbjct: 143 GVVEFAGIAVWILHQSEPPSPRSKNSGTALAVAANGLTNAAGLGTLGPEDASTTSGNFFE 202

Query: 169 ALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTID 228
           ALT+SEFYKNTKVRDI+GSFRWAPFLALQ SNSFLTMLLLLSKYKMKS+PVVDLGEG ID
Sbjct: 203 ALTSSEFYKNTKVRDISGSFRWAPFLALQNSNSFLTMLLLLSKYKMKSVPVVDLGEGKID 262

Query: 229 NIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRR 288
           NIITQS+VIHMLAECAGL+WFESWG K L+EIGLP MS++ IVKVYEDEPVLQAFKLMR+
Sbjct: 263 NIITQSAVIHMLAECAGLQWFESWGTKTLTEIGLPFMSSDLIVKVYEDEPVLQAFKLMRK 322

Query: 289 KKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348
           K IG IPVVE GG KAVGNISLRD+QFLLTAPEIYHDYRSITAKNFLTAVR Y++E H E
Sbjct: 323 KSIGAIPVVESGGKKAVGNISLRDVQFLLTAPEIYHDYRSITAKNFLTAVRSYLKE-HQE 381

Query: 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
            SP+++GMVTC ++HT+KELI  LDS KIHRIYVVD  GNLEGVITLRDIISRLVHEP G
Sbjct: 382 TSPMVNGMVTCKKDHTMKELILKLDSTKIHRIYVVDDAGNLEGVITLRDIISRLVHEPRG 441

Query: 409 YFGDFFDGVLPLPENSRV 426
           YFGDFFDGVLPLP NSRV
Sbjct: 442 YFGDFFDGVLPLPHNSRV 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133948|ref|XP_002321699.1| predicted protein [Populus trichocarpa] gi|222868695|gb|EEF05826.1| predicted protein [Populus trichocarpa]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/412 (81%), Positives = 373/412 (90%), Gaps = 2/412 (0%)

Query: 16  QDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPS-QVIEIKSDTS 74
           QDSP+SPEA+LGMKVEDLWDV EPQLSPTEKLNACFESIPV AFPP PS QVIEIKSDTS
Sbjct: 16  QDSPKSPEARLGMKVEDLWDVQEPQLSPTEKLNACFESIPVSAFPPAPSSQVIEIKSDTS 75

Query: 75  LAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP 134
           LAEAV+IL++H+ILSAPVVDVDAPEDASWIDRYIGIVEFAGI VWILHQSEPPSPRS++P
Sbjct: 76  LAEAVQILSEHKILSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPPSPRSTTP 135

Query: 135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFL 194
            SAL  AVN ++ AA F  LGPE A  TSGNFFEALT+SEFYKNTKVRDIAGSFRWAPFL
Sbjct: 136 GSALEVAVNRVTNAAGFGILGPEDAQATSGNFFEALTSSEFYKNTKVRDIAGSFRWAPFL 195

Query: 195 ALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254
           ALQKSNSFLTMLLLLS YKMKS+PVVDLGE  IDNI+TQSSVIHMLAECAGL+WFESWG 
Sbjct: 196 ALQKSNSFLTMLLLLSNYKMKSVPVVDLGEAKIDNIVTQSSVIHMLAECAGLQWFESWGT 255

Query: 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
           KKLSEIGLP+M+ +H+VKVYE+EPVLQAFKLMR+K++G IP+V+  G K VGNIS+RD+Q
Sbjct: 256 KKLSEIGLPLMTRDHVVKVYEEEPVLQAFKLMRKKRVGAIPIVDSSGIKVVGNISIRDVQ 315

Query: 315 FLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDS 374
           FLLTAPEIYHDYRSITAKNFLTAVR Y+++H    SP +SGMV C++NH++KELI  LDS
Sbjct: 316 FLLTAPEIYHDYRSITAKNFLTAVRSYLKKHQGT-SPFVSGMVVCTKNHSVKELIMKLDS 374

Query: 375 KKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 426
           +KIHR+YVVD  GNLEGVITLRDIISRLVHEP GYFGDFFDGVLPLP NSRV
Sbjct: 375 EKIHRVYVVDDAGNLEGVITLRDIISRLVHEPYGYFGDFFDGVLPLPLNSRV 426

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119660|ref|XP_002318128.1| predicted protein [Populus trichocarpa] gi|222858801|gb|EEE96348.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/430 (79%), Positives = 376/430 (87%), Gaps = 5/430 (1%)

Query: 1   MASVQLQRQGSS---PRQQDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVE 57
           MAS+QL R+ S+      QDSP+SPEA+LGMKVEDLWDV EPQL+PTEKLNACFE IPV 
Sbjct: 1   MASMQLMRRESAFVHEVTQDSPKSPEARLGMKVEDLWDVQEPQLTPTEKLNACFEGIPVS 60

Query: 58  AFPPPPS-QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGI 116
           AFPP PS QVIEIKSDTSLAEAV ILA+H+ILSAPVVDVDAPEDASWIDRYIG+VEFAGI
Sbjct: 61  AFPPAPSSQVIEIKSDTSLAEAVRILAEHKILSAPVVDVDAPEDASWIDRYIGVVEFAGI 120

Query: 117 AVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFY 176
            VWILHQSEPPSPRS +  SAL AAVN ++ AA    LGPE A+ TSGNFFEALT+SEFY
Sbjct: 121 IVWILHQSEPPSPRSPTSGSALEAAVNRVTNAASLGTLGPEDAAATSGNFFEALTSSEFY 180

Query: 177 KNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSV 236
           KNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLS YKMKSIPVVDLGE  IDNIITQSSV
Sbjct: 181 KNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSSYKMKSIPVVDLGEAKIDNIITQSSV 240

Query: 237 IHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPV 296
           IHMLAECAGL+WFESWG +KLSEIGLP+M+ + IVKVYE+EPVLQAFKLMR+KKIGGIP+
Sbjct: 241 IHMLAECAGLQWFESWGTRKLSEIGLPLMAPDRIVKVYEEEPVLQAFKLMRKKKIGGIPI 300

Query: 297 VEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM 356
           V+  G K VGNIS+RD+ FLLTAPEIYHDYRSITAKNF TAV  Y+E  H E SP + GM
Sbjct: 301 VDSSGGKVVGNISIRDVHFLLTAPEIYHDYRSITAKNFSTAVNGYLET-HQEISPFVRGM 359

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDG 416
           V C++N++IKELI  LDS+KIHR+YVVD  GNLEGVITLRDI+SRLVHEP GYFGDFFDG
Sbjct: 360 VICTKNYSIKELIMKLDSEKIHRVYVVDDAGNLEGVITLRDILSRLVHEPRGYFGDFFDG 419

Query: 417 VLPLPENSRV 426
           VLPLP NSRV
Sbjct: 420 VLPLPSNSRV 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440558|ref|XP_004138051.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus] gi|449523992|ref|XP_004169007.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/412 (79%), Positives = 371/412 (90%), Gaps = 3/412 (0%)

Query: 16  QDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPP-SQVIEIKSDTS 74
           ++SPRSPEA++GM+VEDLWD+ EPQLSPTEKLNACFESIPV AFPP P  Q IEI+SD+S
Sbjct: 5   EESPRSPEAKVGMQVEDLWDIQEPQLSPTEKLNACFESIPVSAFPPAPLHQGIEIRSDSS 64

Query: 75  LAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP 134
           LAEAV+ILA+H+ILSAPVVDVDAP+ ASWIDRYIGIVEFAGIAVWILHQSEPPSPRS S 
Sbjct: 65  LAEAVQILAEHKILSAPVVDVDAPDHASWIDRYIGIVEFAGIAVWILHQSEPPSPRSRSG 124

Query: 135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFL 194
            +ALAAA NG       + LGPESA+ T G+FFE+LT+SE YK+T+VRDI+GSFRWAPFL
Sbjct: 125 GNALAAATNGAISPLEQQVLGPESAAATPGSFFESLTSSELYKSTQVRDISGSFRWAPFL 184

Query: 195 ALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254
           ALQ SNSFLTMLLLLSKYKMKSIPVVDLGEG I+NIITQS+VIHMLAECAGL+WFE WG 
Sbjct: 185 ALQTSNSFLTMLLLLSKYKMKSIPVVDLGEGKIENIITQSAVIHMLAECAGLQWFERWGT 244

Query: 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
           K +SE+GLP+MS   IVKVYEDEPVLQAFKLMR+K++GGIPV+EKGG +AVGNISLRDI 
Sbjct: 245 KTVSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKRVGGIPVIEKGG-RAVGNISLRDIH 303

Query: 315 FLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDS 374
           FLLTAPEIYHDYRSITA+NFLTAVR Y+E+ H E SP+LS M+TC +++TIK+LI +LDS
Sbjct: 304 FLLTAPEIYHDYRSITARNFLTAVRDYLEK-HEESSPMLSNMITCKKDNTIKDLILMLDS 362

Query: 375 KKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 426
           KKIHR+YVVD +GNLEGVITLRDIISRLVHEP GYFGDFFDGVLPLP+NSRV
Sbjct: 363 KKIHRVYVVDDDGNLEGVITLRDIISRLVHEPRGYFGDFFDGVLPLPQNSRV 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508802|ref|XP_003523143.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/412 (76%), Positives = 366/412 (88%), Gaps = 6/412 (1%)

Query: 16  QDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPS-QVIEIKSDTS 74
           ++SPRSPEA+LG++VEDLWD+ EPQLSP EKLNACFESIPV AFPPPPS Q +EIKSD +
Sbjct: 5   EESPRSPEAKLGLRVEDLWDIQEPQLSPDEKLNACFESIPVSAFPPPPSNQEVEIKSDAT 64

Query: 75  LAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP 134
           LAEAV++LA+H ILSAPVVDVDAPEDASWIDRYIGIVEFAGI VWILHQSEP SPRS S 
Sbjct: 65  LAEAVKLLAEHSILSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPTSPRSPSS 124

Query: 135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFL 194
            +A  AAV G++    ++ LG ESA+ TSGNFFE LT+S+ YKNTKVRDI+GSFRWAPFL
Sbjct: 125 GAANTAAVTGVA----YEALGLESAATTSGNFFEDLTSSQLYKNTKVRDISGSFRWAPFL 180

Query: 195 ALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254
           AL++SNSFLTMLLLLSKYKMKSIPVVDLG G IDNIITQSSVIHMLAECAGL+WFESWG 
Sbjct: 181 ALERSNSFLTMLLLLSKYKMKSIPVVDLGAGRIDNIITQSSVIHMLAECAGLQWFESWGT 240

Query: 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
           KKLSE+GLP+++ NHI+KVYEDEPVLQAFKLMR+K+IGG+PV+E+GG++A+GNISL+D+Q
Sbjct: 241 KKLSEVGLPMVTPNHIIKVYEDEPVLQAFKLMRKKRIGGLPVMERGGSRAIGNISLQDVQ 300

Query: 315 FLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDS 374
           FLLTAPEIYHDYRSITAK+FLTAVR Y+E+H     P+   ++TC++N TIKELI LLD 
Sbjct: 301 FLLTAPEIYHDYRSITAKDFLTAVRSYLEKHEGA-FPMSGDLITCNKNCTIKELIQLLDH 359

Query: 375 KKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 426
           +K HR+YV D  GNLEG+ITLRDIISRLVHEP GYFGDFFDGVLP+P NSRV
Sbjct: 360 EKNHRVYVADNEGNLEGLITLRDIISRLVHEPRGYFGDFFDGVLPMPPNSRV 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516559|ref|XP_003526961.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like isoform 1 [Glycine max]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/412 (76%), Positives = 363/412 (88%), Gaps = 6/412 (1%)

Query: 16  QDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPS-QVIEIKSDTS 74
           ++SPRSPEA+LG++VEDLWD+ EPQLSP EK NACFESIPV AFPPPPS Q IEIKSD +
Sbjct: 30  EESPRSPEAKLGLRVEDLWDIQEPQLSPDEKFNACFESIPVSAFPPPPSNQEIEIKSDAT 89

Query: 75  LAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP 134
           LAEAV+ILA+H ILSAPVVDVDAP DASWIDRYIGIVEFAGI VWILHQSEP SPRS S 
Sbjct: 90  LAEAVKILAEHNILSAPVVDVDAPNDASWIDRYIGIVEFAGIVVWILHQSEPTSPRSPSG 149

Query: 135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFL 194
            +A  AAVNG++  A     G ESAS TSGNFFE LT+S+ YKNTKVRDI+GSFRWAPFL
Sbjct: 150 GAANTAAVNGITSEAF----GLESASTTSGNFFEDLTSSQLYKNTKVRDISGSFRWAPFL 205

Query: 195 ALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254
           AL++SNSFLTMLLLLSKYKMKSIPVVDLG G IDNIITQSSVIHMLAECAGL+WFESWG 
Sbjct: 206 ALERSNSFLTMLLLLSKYKMKSIPVVDLGAGRIDNIITQSSVIHMLAECAGLQWFESWGT 265

Query: 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
           KKLSE+GLP+++ NHI+KVYEDEPVLQAFKLMR+K+IGG+PV+++G + A+GNISL+D+Q
Sbjct: 266 KKLSEVGLPMVTPNHIIKVYEDEPVLQAFKLMRKKRIGGLPVMDRGSSTAIGNISLKDVQ 325

Query: 315 FLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDS 374
           FLLTAPEIYHDYRSITAK+FLTA+R Y+E+H     P+   ++TC+++ TIKELI LLD 
Sbjct: 326 FLLTAPEIYHDYRSITAKDFLTAIRSYLEKHEGA-FPMSGDLITCNKDCTIKELIQLLDH 384

Query: 375 KKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 426
           +KIHR+YV D +GNLEG+ITLRDIISRLVHEP GYFGDFFDGVLP+P NSRV
Sbjct: 385 EKIHRVYVADNDGNLEGLITLRDIISRLVHEPRGYFGDFFDGVLPMPPNSRV 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516561|ref|XP_003526962.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like isoform 2 [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/419 (74%), Positives = 362/419 (86%), Gaps = 13/419 (3%)

Query: 16  QDSPRSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQV--------I 67
           ++SPRSPEA+LG++VEDLWD+ EPQLSP EK NACFESIPV AFPPPPS          I
Sbjct: 5   EESPRSPEAKLGLRVEDLWDIQEPQLSPDEKFNACFESIPVSAFPPPPSNQGYNFGCSEI 64

Query: 68  EIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPP 127
           EIKSD +LAEAV+ILA+H ILSAPVVDVDAP DASWIDRYIGIVEFAGI VWILHQSEP 
Sbjct: 65  EIKSDATLAEAVKILAEHNILSAPVVDVDAPNDASWIDRYIGIVEFAGIVVWILHQSEPT 124

Query: 128 SPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGS 187
           SPRS S  +A  AAVNG++  A     G ESAS TSGNFFE LT+S+ YKNTKVRDI+GS
Sbjct: 125 SPRSPSGGAANTAAVNGITSEAF----GLESASTTSGNFFEDLTSSQLYKNTKVRDISGS 180

Query: 188 FRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLE 247
           FRWAPFLAL++SNSFLTMLLLLSKYKMKSIPVVDLG G IDNIITQSSVIHMLAECAGL+
Sbjct: 181 FRWAPFLALERSNSFLTMLLLLSKYKMKSIPVVDLGAGRIDNIITQSSVIHMLAECAGLQ 240

Query: 248 WFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGN 307
           WFESWG KKLSE+GLP+++ NHI+KVYEDEPVLQAFKLMR+K+IGG+PV+++G + A+GN
Sbjct: 241 WFESWGTKKLSEVGLPMVTPNHIIKVYEDEPVLQAFKLMRKKRIGGLPVMDRGSSTAIGN 300

Query: 308 ISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKE 367
           ISL+D+QFLLTAPEIYHDYRSITAK+FLTA+R Y+E+H     P+   ++TC+++ TIKE
Sbjct: 301 ISLKDVQFLLTAPEIYHDYRSITAKDFLTAIRSYLEKHEGA-FPMSGDLITCNKDCTIKE 359

Query: 368 LIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 426
           LI LLD +KIHR+YV D +GNLEG+ITLRDIISRLVHEP GYFGDFFDGVLP+P NSRV
Sbjct: 360 LIQLLDHEKIHRVYVADNDGNLEGLITLRDIISRLVHEPRGYFGDFFDGVLPMPPNSRV 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770676|emb|CAN62486.1| hypothetical protein VITISV_010814 [Vitis vinifera]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/430 (73%), Positives = 359/430 (83%), Gaps = 20/430 (4%)

Query: 16  QDSPRS-----PEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIK 70
           +DSPRS     PEA+LGM+VEDLWDV EPQL+PTEKLNACFES+PV AFPP  SQVIEIK
Sbjct: 2   EDSPRSGGMSSPEAKLGMRVEDLWDVQEPQLTPTEKLNACFESVPVSAFPPASSQVIEIK 61

Query: 71  SDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPR 130
           SD SLAEAV+IL +HRILSAPVVDV+APEDASWIDRYIGIVEFAGI VWIL+QSE  SPR
Sbjct: 62  SDCSLAEAVQILTKHRILSAPVVDVEAPEDASWIDRYIGIVEFAGIVVWILYQSELASPR 121

Query: 131 SS--SPSSALAAA------------VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFY 176
            +  +P++                  NGM+     K+LG E A  T G+FFEALT+SEFY
Sbjct: 122 KNGGAPAAGFGTGGKEEAITAVAAAANGMNSPRRLKNLGFEPAEPTPGSFFEALTSSEFY 181

Query: 177 KNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSV 236
           KNTKVRDI+GSFRWAPFLALQKSNSFLTMLLLLS YKMKS+PVVDLGEG IDNI+TQS+V
Sbjct: 182 KNTKVRDISGSFRWAPFLALQKSNSFLTMLLLLSNYKMKSVPVVDLGEGKIDNIVTQSAV 241

Query: 237 IHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPV 296
           IHMLAEC GL WFE WG KK+SE+GLP M  + ++KV EDEPVLQAFKLMR+K IGGIPV
Sbjct: 242 IHMLAECVGLSWFERWGAKKMSELGLPTMKPDQVIKVNEDEPVLQAFKLMRKKGIGGIPV 301

Query: 297 VEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM 356
           VE GG KAVGNIS+RD+QFLLT PEIY ++RSITAKNFL AVRKY+E+ H+E SP+LSGM
Sbjct: 302 VESGGRKAVGNISIRDVQFLLTTPEIYREFRSITAKNFLVAVRKYLEQ-HNEASPMLSGM 360

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDG 416
           +TC RN T+KE+I +LDS KI R+YVVD +GNLEGVITLRDIIS+LVHEP GYFGDFFDG
Sbjct: 361 ITCRRNQTVKEMILMLDSVKIQRVYVVDEDGNLEGVITLRDIISKLVHEPRGYFGDFFDG 420

Query: 417 VLPLPENSRV 426
           VLP+P+NSRV
Sbjct: 421 VLPMPQNSRV 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456307|ref|XP_002283726.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/430 (73%), Positives = 359/430 (83%), Gaps = 20/430 (4%)

Query: 16  QDSPRS-----PEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIK 70
           +DSPRS     PEA+LGM+VEDLWDV EPQL+PTEKLNACFES+PV AFPP  SQVIEIK
Sbjct: 2   EDSPRSGGMSSPEAKLGMRVEDLWDVQEPQLTPTEKLNACFESVPVSAFPPASSQVIEIK 61

Query: 71  SDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPR 130
           SD SLAEAV+IL +HRILSAPVVDV+APEDASWIDRYIGIVEFAGI VWIL+QSE  SPR
Sbjct: 62  SDCSLAEAVQILTKHRILSAPVVDVEAPEDASWIDRYIGIVEFAGIVVWILYQSELASPR 121

Query: 131 SS--SPSSALAAA------------VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFY 176
            +  +P++                  NGM+     K+LG E A  T G+FFEALT+SEFY
Sbjct: 122 KNGGAPAAGFGTGGKEEAITAVAAAANGMNSPRRLKNLGFEPAEPTPGSFFEALTSSEFY 181

Query: 177 KNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSV 236
           KNTKVRDI+GSFRWAPFLALQKSNSFLTMLLLLS YKMKS+PVVDLGEG IDNI+TQS+V
Sbjct: 182 KNTKVRDISGSFRWAPFLALQKSNSFLTMLLLLSNYKMKSVPVVDLGEGKIDNIVTQSAV 241

Query: 237 IHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPV 296
           IHMLAEC GL WFE WG KK+SE+GLP M  + ++KV EDEPVLQAFKLMR+K IGGIPV
Sbjct: 242 IHMLAECVGLSWFERWGAKKMSELGLPTMKPDQVIKVNEDEPVLQAFKLMRKKGIGGIPV 301

Query: 297 VEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM 356
           VE GG KAVGNIS+RD+QFLLT PEIY ++RSITAKNFL AVRKY+E+ H+E SP+LSGM
Sbjct: 302 VESGGRKAVGNISIRDVQFLLTTPEIYREFRSITAKNFLVAVRKYLEQ-HNEASPMLSGM 360

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDG 416
           +TC RN T+KE+I +LDS KI R+YVVD +GNLEGVITLRDIIS+LVHEP GYFGDFFDG
Sbjct: 361 ITCRRNQTVKEMILMLDSVKIQRVYVVDEDGNLEGVITLRDIISKLVHEPRGYFGDFFDG 420

Query: 417 VLPLPENSRV 426
           VLP+P+NSRV
Sbjct: 421 VLPMPQNSRV 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734412|emb|CBI15659.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/420 (74%), Positives = 354/420 (84%), Gaps = 15/420 (3%)

Query: 21  SPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVE 80
           SPEA+LGM+VEDLWDV EPQL+PTEKLNACFES+PV AFPP  SQVIEIKSD SLAEAV+
Sbjct: 3   SPEAKLGMRVEDLWDVQEPQLTPTEKLNACFESVPVSAFPPASSQVIEIKSDCSLAEAVQ 62

Query: 81  ILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS--SPSSAL 138
           IL +HRILSAPVVDV+APEDASWIDRYIGIVEFAGI VWIL+QSE  SPR +  +P++  
Sbjct: 63  ILTKHRILSAPVVDVEAPEDASWIDRYIGIVEFAGIVVWILYQSELASPRKNGGAPAAGF 122

Query: 139 AAA------------VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAG 186
                           NGM+     K+LG E A  T G+FFEALT+SEFYKNTKVRDI+G
Sbjct: 123 GTGGKEEAITAVAAAANGMNSPRRLKNLGFEPAEPTPGSFFEALTSSEFYKNTKVRDISG 182

Query: 187 SFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGL 246
           SFRWAPFLALQKSNSFLTMLLLLS YKMKS+PVVDLGEG IDNI+TQS+VIHMLAEC GL
Sbjct: 183 SFRWAPFLALQKSNSFLTMLLLLSNYKMKSVPVVDLGEGKIDNIVTQSAVIHMLAECVGL 242

Query: 247 EWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVG 306
            WFE WG KK+SE+GLP M  + ++KV EDEPVLQAFKLMR+K IGGIPVVE GG KAVG
Sbjct: 243 SWFERWGAKKMSELGLPTMKPDQVIKVNEDEPVLQAFKLMRKKGIGGIPVVESGGRKAVG 302

Query: 307 NISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIK 366
           NIS+RD+QFLLT PEIY ++RSITAKNFL AVRKY+E+ H+E SP+LSGM+TC RN T+K
Sbjct: 303 NISIRDVQFLLTTPEIYREFRSITAKNFLVAVRKYLEQ-HNEASPMLSGMITCRRNQTVK 361

Query: 367 ELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 426
           E+I +LDS KI R+YVVD +GNLEGVITLRDIIS+LVHEP GYFGDFFDGVLP+P+NSRV
Sbjct: 362 EMILMLDSVKIQRVYVVDEDGNLEGVITLRDIISKLVHEPRGYFGDFFDGVLPMPQNSRV 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
TAIR|locus:2114475	424	KING1 "AT3G48530" [Arabidopsis	0.936	0.941	0.666	5.5e-141
DICTYBASE|DDB_G0275177	304	sigI "CBS (cystathionine-beta-	0.507	0.710	0.243	2.5e-14
DICTYBASE|DDB_G0288201	313	DDB_G0288201 [Dictyostelium di	0.509	0.693	0.228	1.8e-12
UNIPROTKB|Q3HLQ7	158	PRKAG2 "5'-AMP-activated prote	0.326	0.879	0.290	1.7e-10
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.413	0.311	0.270	2e-10
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.413	0.539	0.255	3.1e-10
MGI|MGI:1336153	566	Prkag2 "protein kinase, AMP-ac	0.413	0.310	0.260	7.6e-10
UNIPROTKB|F1SSN2	331	PRKAG2 "Uncharacterized protei	0.413	0.531	0.244	1.9e-09
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.413	0.333	0.255	2.3e-09
UNIPROTKB|F1MFX9	330	PRKAG2 "Uncharacterized protei	0.413	0.533	0.244	2.4e-09

TAIR|locus:2114475 KING1 "AT3G48530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 270/405 (66%), Positives = 314/405 (77%)

Query:    23 EAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFP-PPPSQVIEIKSDTSLAEAVEI 81
             EA+LGM+VEDLWD  +PQLSP EKLNACFESIPV AFP    SQ IEI+SDTSLAEAV+ 
Sbjct:    25 EAKLGMRVEDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAVQT 84

Query:    82 LAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQXXXXXXXXXXXXXXXXXX 141
             L++ ++LSAPVVDVDAPEDASWIDRYIGIVEF GI VW+LHQ                  
Sbjct:    85 LSKFKVLSAPVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLEPPSPRSPAVAAS---- 140

Query:   142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQXXXX 201
              NG S       L    +++TSGNFFE LT+SE YKNTKVRDI+G+FRWAPFLALQ    
Sbjct:   141 -NGFSHDFTTDVLDNGDSAVTSGNFFEVLTSSELYKNTKVRDISGTFRWAPFLALQKENS 199

Query:   202 XXXXXXXXXXXXXXXIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIG 261
                            IPVVDLG   I+NIITQS VIHMLAECAGL WFE WG K LSE+G
Sbjct:   200 FLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVG 259

Query:   262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
             LPIMS +HI+K+YEDEPVLQAFKLMRRK+IGGIPV+E+   K VGNISLRD+QFLLTAPE
Sbjct:   260 LPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPE 319

Query:   322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
             IYHDYRSIT KNFL +VR+++E+     +P++SG++ C++NHT+KELI +LD++KIHRIY
Sbjct:   320 IYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIY 379

Query:   382 VVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 426
             VVD  GNLEG+ITLRDII+RLVHEP GYFGDFFDGV+PLPEN RV
Sbjct:   380 VVDDFGNLEGLITLRDIIARLVHEPSGYFGDFFDGVMPLPENYRV 424

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

DICTYBASE|DDB_G0275177 sigI "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 165 (63.1 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 58/238 (24%), Positives = 108/238 (45%)

Query:   165 NFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQXXXXXXXXXXXXXXXXXXXIPVVDLGE 224
             NF   L + E ++  K+ DI        +  ++                   +P++D  E
Sbjct:    82 NFI--LESKEIFQKFKIGDICDLSGRNGYYPVESTAPLKIGIDLMTKWGVHRLPIID-SE 138

Query:   225 GTIDNIITQSSVIHMLAECAGLEWFESWGKK--KLSEIGLPIMSANHIVKVYEDEPVLQA 282
             GT+ +I+TQS V+  +     ++      K   +L E G      + ++ + +D  V+ A
Sbjct:   139 GTLISILTQSRVVEYIQN--HIQNINGLDKAIGQLKEFG-----TSSVISIKQDRMVIDA 191

Query:   283 FKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYM 342
             F+LM    I  +PVV + G   +GNIS+ D++       + +D  ++ ++ FL  +  ++
Sbjct:   192 FRLMHENGISAVPVVNQIGI-LIGNISVSDMKM------VGYD-GTLFSRMFLP-IESFL 242

Query:   343 EEHHHEDSPLLSGMVTCSRNHT-IKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII 399
             E      +  + G V C  + T I+E+I      K+HR+Y VD  G    VI+  D++
Sbjct:   243 EMKPKNQNIDIFGKVLCVLDSTTIEEIITKFYISKVHRLYKVDLEGRPSAVISQGDLL 300

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0288201 DDB_G0288201 [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 54/236 (22%), Positives = 109/236 (46%)

Query:   170 LTTSEFYKNTKVRDIAGSFRWAPFLALQXXXXXXXXXXXXXXXXXXXIPVVDLGEGTIDN 229
             L   + +K + V DI  S +  PF+ +                    + V++  +G + N
Sbjct:    90 LQDRKLFKKSIVADICDSSKRDPFIVVDSETMLDNVAGLMVKNNIRRVAVLNQ-KGELCN 148

Query:   230 IITQSSVIHMLAECAGLEW-FESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRR 288
             IIT S +I  ++    ++   E  GK  + E+ +     + +V +  D+    AFKL+ +
Sbjct:   149 IITNSRIIECISHLFAMDKELEKLGKMTIKEMKI---GTSDVVSISSDKKAWDAFKLISK 205

Query:   289 KKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI-YHDYRSITAKNFLTAVRKYMEEHHH 347
               + G+ V +  G K +G I   D++  L  P+  Y     +    +L A++K  + ++ 
Sbjct:   206 MGVSGVGVTDSQG-KLIGAIGDSDLK--LIKPKFQYLQLLHLPVSEYLQALKKVTDNNY- 261

Query:   348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
                      + C  + T K ++  +  KK HR++VV+ + +  GV++L+DI+ ++V
Sbjct:   262 ---------IFCKPSDTFKSVVENVSEKKAHRVFVVNDDHHPIGVVSLQDILEQIV 308

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q3HLQ7 PRKAG2 "5'-AMP-activated protein kinase gamma-2 non-catalytic subunit transcript variant 4" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 45/155 (29%), Positives = 80/155 (51%)

Query:   254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
             KK L E+G  I + ++I  ++ D P+++A  +   ++I  +PVV++ G K V   S  D+
Sbjct:    11 KKNLDELG--IGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESG-KVVDIYSKFDV 67

Query:   314 QFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLD 373
                L A + Y++   IT    L    +Y E           G+V CS   T++ ++  + 
Sbjct:    68 -INLAAEKTYNNL-DITVTQALQHRSQYFE-----------GVVKCSMLETLETIVDRIV 114

Query:   374 SKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
               ++HR+ VV+   ++ G+I+L DI+  LV  P G
Sbjct:   115 KAEVHRLVVVNEADSIVGIISLSDILQALVLTPAG 149

GO:0016301 "kinase activity" evidence=IEA

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 52/192 (27%), Positives = 94/192 (48%)

Query:   217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
             +PV+D   G    I+T   ++  L          ++ KK L E+G  I + ++I  ++ D
Sbjct:   381 LPVIDPVSGNALYILTHKRILKFLQLFMSEMPKPAFMKKNLDELG--IGTYHNIAFIHPD 438

Query:   277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
              P+++A  +   ++I  +PVV++ G K V   S  D+   L A + Y++   IT    L 
Sbjct:   439 TPIIKALNIFVERRISALPVVDESG-KVVDIYSKFDV-INLAAEKTYNNL-DITVTQALQ 495

Query:   337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
                +Y E           G+V CS   T++ ++  +   ++HR+ VV+   ++ G+I+L 
Sbjct:   496 HRSQYFE-----------GVVKCSMLETLETIVDRIVKAEVHRLVVVNEADSIVGIISLS 544

Query:   397 DIISRLVHEPPG 408
             DI+  LV  P G
Sbjct:   545 DILQALVLTPAG 556

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
 Identities = 49/192 (25%), Positives = 95/192 (49%)

Query:   217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
             +PV+D   G    I+T   ++  L          ++ K+ L E+G  I + ++I  ++ +
Sbjct:   142 LPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELG--IGTYHNIAFIHPN 199

Query:   277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
              P+++A  +   ++I  +PVV++ G K V   S  D+   L A + Y++   IT    L 
Sbjct:   200 TPIIKALNIFVERRISALPVVDESG-KVVDIYSKFDV-INLAAEKTYNNL-DITVTQALQ 256

Query:   337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
                +Y E           G+V CS+  T++ ++  +   ++HR+ VV+   ++ G+I+L 
Sbjct:   257 HRSQYFE-----------GVVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIVGIISLS 305

Query:   397 DIISRLVHEPPG 408
             DI+  L+  P G
Sbjct:   306 DILQALILTPAG 317

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
 Identities = 50/192 (26%), Positives = 95/192 (49%)

Query:   217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
             +PV+D   G    I+T   ++  L          ++ K+ L E+G  I + ++I  ++ D
Sbjct:   382 LPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELG--IGTYHNIAFIHPD 439

Query:   277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
              P+++A  +   ++I  +PVV++ G K V   S  D+   L A + Y++   IT    L 
Sbjct:   440 TPIIKALNIFVERRISALPVVDESG-KVVDIYSKFDV-INLAAEKTYNNL-DITVTQALQ 496

Query:   337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
                +Y E           G+V CS+  T++ ++  +   ++HR+ VV+   ++ G+I+L 
Sbjct:   497 HRSQYFE-----------GVVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIVGIISLS 545

Query:   397 DIISRLVHEPPG 408
             DI+  L+  P G
Sbjct:   546 DILQALILTPAG 557

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|F1SSN2 PRKAG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 47/192 (24%), Positives = 93/192 (48%)

Query:   217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
             +PV+D   G    I+T   ++  L          ++ K+ L  +G  I + ++I  ++ D
Sbjct:   147 LPVIDPVSGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDALG--IGTYDNIAFIHPD 204

Query:   277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
              P+++A  +   +++  +PVV++ G K V   S  D+   L A + Y++   IT    L 
Sbjct:   205 TPIIRALNVFVERRVSALPVVDESG-KVVDIYSKFDV-INLAAEKTYNNL-DITVTQALQ 261

Query:   337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
                +Y E           G+V CS+   ++ ++  +   ++HR+ VV+   ++ G+I+L 
Sbjct:   262 HRSQYFE-----------GVVKCSKLEILETIVDRIVRAEVHRLVVVNEADSIVGIISLS 310

Query:   397 DIISRLVHEPPG 408
             DI+  L+  P G
Sbjct:   311 DILQALILTPAG 322

GO:0043531 "ADP binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
 Identities = 49/192 (25%), Positives = 95/192 (49%)

Query:   217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
             +PV+D   G    I+T   ++  L          ++ K+ L E+G  I + ++I  ++ +
Sbjct:   344 LPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELG--IGTYHNIAFIHPN 401

Query:   277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
              P+++A  +   ++I  +PVV++ G K V   S  D+   L A + Y++   IT    L 
Sbjct:   402 TPIIKALNIFVERRISALPVVDESG-KVVDIYSKFDV-INLAAEKTYNNL-DITVTQALQ 458

Query:   337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
                +Y E           G+V CS+  T++ ++  +   ++HR+ VV+   ++ G+I+L 
Sbjct:   459 HRSQYFE-----------GVVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIVGIISLS 507

Query:   397 DIISRLVHEPPG 408
             DI+  L+  P G
Sbjct:   508 DILQALILTPAG 519

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|F1MFX9 PRKAG2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
 Identities = 47/192 (24%), Positives = 93/192 (48%)

Query:   217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
             +PV+D   G    I+T   ++  L          ++ K+ L  +G  I + ++I  ++ D
Sbjct:   146 LPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDALG--IGTYHNIAFIHPD 203

Query:   277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
              P+++A  +   +++  +PVV++ G K V   S  D+   L A + Y++   IT    L 
Sbjct:   204 TPIIKALNVFVERRVSALPVVDESG-KVVDIYSKFDV-INLAAEKTYNNL-DITVTQALQ 260

Query:   337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
                +Y E           G+V CS+   ++ ++  +   ++HR+ VV+   ++ G+I+L 
Sbjct:   261 HRSQYFE-----------GVVKCSKLEILETIVDRIVRAEVHRLVVVNEADSIVGIISLS 309

Query:   397 DIISRLVHEPPG 408
             DI+  L+  P G
Sbjct:   310 DILQALILTPAG 321

GO:0043531 "ADP binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBB2	KING1_ARATH	No assigned EC number	0.7122	0.9788	0.9834	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	1e-44
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-17
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	4e-13
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	4e-12
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	7e-12
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-11
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-11
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-11
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	7e-11
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-10
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	5e-10
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	6e-10
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-09
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	2e-09
pfam00571	57	pfam00571, CBS, CBS domain	2e-09
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	6e-09
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	6e-09
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	1e-08
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	1e-08
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	2e-08
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	2e-08
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-08
pfam00571	57	pfam00571, CBS, CBS domain	6e-08
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	6e-08
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	9e-08
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	3e-07
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-07
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	4e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	5e-07
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	6e-07
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	9e-07
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-06
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	1e-06
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	1e-06
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-06
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	3e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	4e-06
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	4e-06
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	4e-06
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	6e-06
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	7e-06
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	9e-06
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	1e-05
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	2e-05
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-05
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-05
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	5e-05
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	5e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	5e-05
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	6e-05
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	8e-05
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	8e-05
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	9e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	1e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	1e-04
pfam00571	57	pfam00571, CBS, CBS domain	2e-04
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	3e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-04
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	3e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	3e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	3e-04
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	4e-04
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	4e-04
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	4e-04
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	6e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	8e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	8e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	0.001
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	0.001
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.001
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	0.001
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	0.001
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	0.001
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	0.002
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	0.002
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.002
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.002
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	0.002
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	0.002
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.003
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	0.003
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	0.003
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	0.004
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.004
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	0.004

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  150 bits (382), Expect = 1e-44
 Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 8/134 (5%)

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYR 327
           + +V +  DE VL AFKLMR+  I G+PVV++ G K +GNIS  D++ LL +P+    YR
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDDLLLYR 59

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387
           +IT K                D      ++TC+ + T+KE+I  L + K+HR++VVD  G
Sbjct: 60  TITFKELSEKFT-------DSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEG 112

Query: 388 NLEGVITLRDIISR 401
              GVITL DIIS 
Sbjct: 113 KPIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 75.5 bits (186), Expect = 8e-17
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 29/136 (21%)

Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
            +V V  D+ V +A +LM    I G+PVV+  G + VG ++ RD+               
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG-RLVGIVTERDL--------------- 45

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGM----VTCSRNHTIKELIHLLDSKKIHRIYVVD 384
                    +R   E        +   M    VT S + +++E   L+    I R+ VVD
Sbjct: 46  ---------LRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD 96

Query: 385 FNGNLEGVITLRDIIS 400
             G L G++T  DI+ 
Sbjct: 97  DEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 64.8 bits (159), Expect = 4e-13
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 29/133 (21%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
           + V  D  V +A +LM    I G+PVV+    K VG ++ RD++F               
Sbjct: 5   ITVSPDATVAEALELMAEYGISGLPVVD-DDGKLVGIVTNRDLRF--------------- 48

Query: 331 AKNFLTAVRKYM--EEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
             +    V + M  E             +T     +++E + LL   KI ++ VVD  G 
Sbjct: 49  ETDLDKPVSEVMTPENL-----------LTTVEGTSLEEALELLHEHKIEKLPVVDDEGK 97

Query: 389 LEGVITLRDIISR 401
           L+G+IT++DI  R
Sbjct: 98  LKGLITVKDIEKR 110

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 26/138 (18%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM+ + ++ V  D  V  A  LM    +  +PVV+    K VG I+ RDI   L A    
Sbjct: 4   IMTKD-VITVKPDTSVRDALLLMSENGVSAVPVVD--DGKLVGIITERDILRALAAGG-- 58

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLL-DSKKIHRIYV 382
                      L  V++ M +           +VT   +  ++E + L+ +  KI R+ V
Sbjct: 59  ---------KRLLPVKEVMTK----------PVVTVDPDTPLEEALELMVERHKIRRLPV 99

Query: 383 VDFNG-NLEGVITLRDII 399
           VD +G  L G+ITL DI+
Sbjct: 100 VDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES 251
           PF+ +  + S    + +L    +  + V +   G +  I++Q  ++  L E A       
Sbjct: 2   PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL- 60

Query: 252 WGKKKLSEIGLPIMSANH-IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISL 310
                       +      ++ +  D+P++ A  LM  + I  + VV+  GN  +GNIS+
Sbjct: 61  --DPLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGN-LIGNISV 117

Query: 311 RDIQFL 316
            D++ L
Sbjct: 118 TDVRLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 26/131 (19%)

Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333
           +  V    +LM RK I GIPVVE G    K VG I+ RDI+F                K+
Sbjct: 96  ETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF---------------VKD 140

Query: 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVI 393
               V + M             ++T      ++E + +L   +I ++ VVD NG L G+I
Sbjct: 141 KGKPVSEVMTR---------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLI 191

Query: 394 TLRDIISRLVH 404
           T++DI+ R   
Sbjct: 192 TMKDIVKRRKF 202

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 64.4 bits (158), Expect = 3e-11
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 25/131 (19%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
           V V  D  + +A  LM R  I G+PVV++ G K VG I+ RD++F               
Sbjct: 98  VTVTPDTTLAEALALMARYGISGVPVVDENG-KLVGIITNRDVRF--------------- 141

Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
             +    V + M     E       +VT     T++E + LL   +I ++ VVD NG L+
Sbjct: 142 ETDLSQPVSEVMT---KER------LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLK 192

Query: 391 GVITLRDIISR 401
           G+IT++DI   
Sbjct: 193 GLITVKDIEKA 203

Length = 486

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES 251
             + +   ++    L L+ ++ +  +PVVD  +G +  I+T+  ++  LAE         
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVD-DDGRLVGIVTERDLLRALAE--------- 51

Query: 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLR 311
            G          +M+ + +V V  D  + +A +LM    I  +PVV+  G + VG ++  
Sbjct: 52  -GGLDPLVTVGDVMTRD-VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRS 108

Query: 312 DI 313
           DI
Sbjct: 109 DI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.7 bits (143), Expect = 7e-11
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 21/129 (16%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
           ++ V  D  V +A KLM  K IG + VV+  G + VG  S RDI       ++     S 
Sbjct: 3   VITVRPDATVAEAAKLMAEKNIGAVVVVD-DGGRLVGIFSERDI-----VRKVALRGASA 56

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNL 389
                 T V + M             ++T + + T+ E + L+  ++   + VVD  G L
Sbjct: 57  LD----TPVSEIMT----------RNVITVTPDDTVDEAMALMTERRFRHLPVVD-GGKL 101

Query: 390 EGVITLRDI 398
            G++++ D+
Sbjct: 102 VGIVSIGDV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 21/123 (17%)

Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFL 335
           D+ + +A +LMR   +G +PV E   ++ VG ++ RDI     A     D  +       
Sbjct: 9   DDTIREAARLMREHDVGALPVCE--NDRLVGIVTDRDIVVRAVAEG--RDPDT------- 57

Query: 336 TAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITL 395
           T V   M            G+VT + +  + E   L+   ++ R+ VVD +G L G+++L
Sbjct: 58  TTVGDVMTR----------GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSL 107

Query: 396 RDI 398
            D+
Sbjct: 108 GDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 21/134 (15%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE----IYHD 325
           ++ V  D+ V  A +LM    I  +PV+E  G K VG ++ +DI   L +        H 
Sbjct: 3   VITVSPDDRVSHARRLMLDHDISRLPVIE--GGKLVGIVTEKDIADALRSFRPLVRDRHQ 60

Query: 326 YRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF 385
            R I  +N    V   M             ++T   + ++ ++  L+    I  + VVD 
Sbjct: 61  ERRI--RNLP--VSDIMTR----------PVITIEPDTSVSDVASLMLENNIGGLPVVD- 105

Query: 386 NGNLEGVITLRDII 399
           +G L G++T  DI+
Sbjct: 106 DGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE-SWGKKKLSEIGLP--- 263
           ++ +   + +PVVD G G +  IIT + ++  L    G E F        L  I  P   
Sbjct: 18  IMVRNGFRRLPVVDEGTGKLVGIITATDILKYL---GGGEKFNKIKTGNGLEAINEPVRS 74

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           IM+ N ++ +  D+ +  A +LM  K++GG+PVV+  G K VG ++ RD+
Sbjct: 75  IMTRN-VITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 15/109 (13%)

Query: 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIM 265
           LLL+S+  + ++PVVD  +G +  IIT+  ++  LA              K       +M
Sbjct: 22  LLLMSENGVSAVPVVD--DGKLVGIITERDILRALAA-----------GGKRLLPVKEVM 68

Query: 266 SANHIVKVYEDEPVLQAFKLMRR-KKIGGIPVVEKGGNKAVGNISLRDI 313
           +   +V V  D P+ +A +LM    KI  +PVV+  G K VG I+L DI
Sbjct: 69  TKP-VVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116

Length = 117

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 24/136 (17%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYH--DYR 327
           I     D P++    ++  +++  +P+V++ G              ++   ++Y   D  
Sbjct: 3   IATARPDTPLIDVLDMLVERRVSALPIVDENGK-------------VV---DVYSRFDVI 46

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRN---HTIKELIHLLDSKKIHRIYVVD 384
           ++  +     +   + E     S    G+ TCS +    TI +LI      ++HR+ VVD
Sbjct: 47  NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPDDCLRTIFDLIVK---ARVHRLVVVD 103

Query: 385 FNGNLEGVITLRDIIS 400
            N  +EG+I+L DI+ 
Sbjct: 104 ENKRVEGIISLSDILQ 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404
           +VT   + +++E + L+    I R+ VVD +G L G++TLRD++  L+ 
Sbjct: 9   VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 13/133 (9%)

Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAPEIYHDYR 327
            +V V    P+++A K+M R     +PVV++G  K VG I+  DI ++L    +      
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNK--- 58

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSG-MVTCSRNHTIKELIHLLDSKKIHRIYVVDFN 386
            I   N L A+ + +         +++  ++T + + +IK+   L+  K++  + VVD +
Sbjct: 59  -IKTGNGLEAINEPVRS-------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD 110

Query: 387 GNLEGVITLRDII 399
           G L G++T RD++
Sbjct: 111 GKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 18/132 (13%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI---QFLLTAPEIYHDYR 327
           + V  D  +++A KLM+   I  +PVV++G  K VG ++ RD+              +  
Sbjct: 4   ITVTPDTSLMEALKLMKENSIRRLPVVDRG--KLVGIVTDRDLKLASPSKATTLDIWELY 61

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387
            + +K     V   M              +T S + +++E   L+  +KI  + VVD  G
Sbjct: 62  YLLSK---IKVSDIMTRD----------PITVSPDASVEEAAELMLERKISGLPVVDDQG 108

Query: 388 NLEGVITLRDII 399
            L G+IT  D+ 
Sbjct: 109 RLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 22/131 (16%)

Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
            +V V  D  + +A KLM  + +G + VV+    + +G ++ RDI             R+
Sbjct: 2   PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDE-RPIGIVTERDI------------VRA 48

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
           + A   L        E       +   +VT   +  + E   L+    I    VVD  G 
Sbjct: 49  VAAGIDLDTPV---SEI------MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGE 99

Query: 389 LEGVITLRDII 399
           L GVI++RD++
Sbjct: 100 LVGVISIRDLV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 35/152 (23%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI-------- 322
           +    D+ +  A +L+R  KI G PV++ G  K VG +S  DI  LL   +         
Sbjct: 4   ITCNADDTISDAARLLRENKISGAPVLDGG--KLVGIVSESDILKLLVTHDPSGNLWLPS 61

Query: 323 --------------YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKEL 368
                         + + +          VR  M +           ++T S + +I++ 
Sbjct: 62  PLELIELPLREFINWEETKRALTDAGKMKVRDIMTKK----------VITISPDASIEDA 111

Query: 369 IHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400
             L+   KI R+ VV+ +G L G++T  DII 
Sbjct: 112 AELMVRHKIKRLPVVE-DGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 31/150 (20%)

Query: 254 KKKLSEIGL-PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRD 312
           K+K+  +    +++         D+ + +A KL   K I G PVV+    K VG I+L D
Sbjct: 171 KEKVKNLMSKKLITVRP------DDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSD 222

Query: 313 IQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLL 372
           I             ++I   N    V  YM             ++T + +  I + I L+
Sbjct: 223 IA------------KAIANGNLDAKVSDYM----------RKNVITINEDEDIYDAIRLM 260

Query: 373 DSKKIHRIYVVDFNGNLEGVITLRDIISRL 402
           +   + R+ V D NG   G+IT  DI++R+
Sbjct: 261 NKNNVGRLLVTDSNGKPVGIITRTDILTRI 290

Length = 294

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 26/126 (20%)

Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAPEIYHDYRSITAKNF 334
           D+ V QA + MR   +  +PVV+ G  + VG+I   D+   L+     +           
Sbjct: 9   DDTVSQAIERMREYGVSQLPVVDDG--RVVGSIDESDLLDALIEGKAKFSL--------- 57

Query: 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVIT 394
              VR+ M E           + T   +  I+EL  LLD    +   VVD  G   G+IT
Sbjct: 58  --PVREVMGEP----------LPTVDPDAPIEELSELLDRG--NVAVVVDEGGKFVGIIT 103

Query: 395 LRDIIS 400
             D++ 
Sbjct: 104 RADLLK 109

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402
           +VT S + T++E + LL    I R+ VVD  G L G++T RDII  L
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           IM+ + +V V  D  + +A +LMR   I  +PVV++ G K VG ++LRD+
Sbjct: 4   IMTPD-VVTVPPDTSLEEALELMRENGISRLPVVDEDG-KLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 25/139 (17%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM +  +V V  D+ +     LMR K I  +PV+E+  +K VG+I+  DI   L   E  
Sbjct: 70  IMHSP-VVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALL--EGM 124

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
              RS+        VR+ M E             T S + ++  +  LL+    H   +V
Sbjct: 125 ESIRSLR-------VREVMGE----------PFPTVSPDESLNVISQLLEE---HPAVLV 164

Query: 384 DFNGNLEGVITLRDIISRL 402
             NG + G+IT  DI+  L
Sbjct: 165 VENGKVVGIITKADIMKLL 183

Length = 187

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406
           VT S + T+ E + L+    I  + VVD +G L G++T RD++  L    
Sbjct: 4   VTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG 53

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 24/133 (18%)

Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRD-IQFLLTAPEIYHDYR 327
           + V    D  V +A + + + KI G PVV+  GN  VG +S +D ++ LL +   YH   
Sbjct: 2   NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGN-LVGFLSEQDCLKQLLES--SYHCDG 58

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY-VVDFN 386
             T       VR  M     E       ++T S + +I +L  L+   K  + Y VVD +
Sbjct: 59  VAT-------VRDIM---TTE-------VLTVSPDDSIVDLAQLMLKAK-PKRYPVVD-D 99

Query: 387 GNLEGVITLRDII 399
           G L G I+ RD++
Sbjct: 100 GKLVGQISRRDVL 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 24/119 (20%)

Query: 281 QAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRK 340
           +A +L     I G PVV+ G  K VG ++L DI              +I     L  V+ 
Sbjct: 14  EAARLFNTHHIHGAPVVDDG--KLVGIVTLSDIA------------HAIARGLELAKVKD 59

Query: 341 YMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII 399
            M +           ++T   +  + + I L++   + R+ V D  G   G+IT  DI+
Sbjct: 60  VMTKD----------VITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 198 KSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLE---------- 247
           K ++   ++ +L   K+  +PVVD  EG +  I+++  +I  + +  GL           
Sbjct: 8   KDDTLRDVVEILLTGKISGVPVVD-NEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIF 66

Query: 248 WFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGN 307
             ES  KK L +    IM+   ++ V ED  +    ++M +K I  +PVV+ G  K VG 
Sbjct: 67  LDESKIKKLLGKKVEEIMTKK-VITVDEDTTIEDVARIMSKKNIKRLPVVDDG--KLVGI 123

Query: 308 ISLRDI 313
           IS  DI
Sbjct: 124 ISRGDI 129

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 21/135 (15%)

Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
            +V +     + +A +LMR  KI  +PVV++ G + VG ++ RD+             R 
Sbjct: 2   DVVTITPTTTIAEALELMREHKIRHLPVVDEEG-RLVGIVTDRDL-------------RD 47

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGM----VTCSRNHTIKELIHLLDSKKIHRIYVVD 384
            +   F T     +        P+   M    +T     T++E   L+   +I  + VV+
Sbjct: 48  ASPSPFTTLSEHELYL--LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE 105

Query: 385 FNGNLEGVITLRDII 399
            +G L G+IT  D++
Sbjct: 106 -DGRLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 23/133 (17%)

Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
            I+    D  + +A   MR ++I  I VV+ G  + +G ++ RDI  LL +         
Sbjct: 2   QILTCPPDTSLAEAASRMRERRISSIVVVDDG--RPLGIVTERDILRLLASGP------- 52

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
               +  T V + M       SPLL    T   + ++ +   L+    I  + VVD +G 
Sbjct: 53  ----DLQTPVGEVMS------SPLL----TVPADTSLYDARQLMREHGIRHLVVVDDDGE 98

Query: 389 LEGVITLRDIISR 401
           L G+++  D++  
Sbjct: 99  LLGLLSQTDLLQN 111

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 23/127 (18%)

Query: 273 VYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332
           V  D  V +   LM  ++  G PVV+ G  + VG ++L DI             R + A+
Sbjct: 6   VPVDLTVDEVLALMFGERHRGYPVVDDG--RLVGIVTLADI-------------RRVPAE 50

Query: 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGV 392
                V                  VT S + T+++ +  +  + I R+ VVD +G L G+
Sbjct: 51  GREATVLVGDVMTR--------DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGI 102

Query: 393 ITLRDII 399
           ++  D++
Sbjct: 103 VSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSV----IHMLAECAGLEWFESWGKKKLSEIGLP 263
           L+ +  ++ +PVVD   G +  I+T   +              E +    K K+S+I   
Sbjct: 18  LMKENSIRRLPVVD--RGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDI--- 72

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
            M+ +  + V  D  V +A +LM  +KI G+PVV+  G + VG I+  D+
Sbjct: 73  -MTRD-PITVSPDASVEEAAELMLERKISGLPVVDDQG-RLVGIITESDL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 355 GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII 399
            + T    H++  ++  ++   + R+ VVD NG   GVIT RD+ 
Sbjct: 2   DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 33/132 (25%)

Query: 273 VYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332
           V  +  + +A +L+ R     +PVVE  G + VG IS RD                    
Sbjct: 7   VRPEATIEEARELLLRYGHTALPVVE--GGRVVGIISRRD-------------------- 44

Query: 333 NFLTAVRKYMEEHHHEDSPLLSGM----VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
                V K +  H    +P+   M    VT   +  + E+  L+    I R+ VV+ +G 
Sbjct: 45  -----VEKAL-RHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGR 97

Query: 389 LEGVITLRDIIS 400
           L G++T  D++ 
Sbjct: 98  LVGIVTRTDLLR 109

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL 317
           +V V  D  + +A +L+R   I  +PVV++ G + VG ++ RDI   L
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEG-RLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 273 VYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAPEIYHDYRSITA 331
           V +   +  A  ++ +     IPV++K G K VG ISL DI   L     +         
Sbjct: 6   VQDTNTLRHALLVLTKHGYSAIPVLDKEG-KYVGTISLTDILWKLKGLENL--------- 55

Query: 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEG 391
            +    V   + +  + D P          +  I+E++HLL  +    + VVD +G   G
Sbjct: 56  -DLERLVDLKVIDVMNTDVP------VIIDDADIEEILHLLIDQPF--LPVVDDDGIFIG 106

Query: 392 VITLRDII 399
           +IT R+I+
Sbjct: 107 IITRREIL 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405
           +T   + ++++ + L+    +  + VVD +G L G+IT RDI+  L   
Sbjct: 10  ITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAG 57

Length = 117

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400
           VT +   TI E + L+   KI  + VVD  G L G++T RD+  
Sbjct: 4   VTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRD 47

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
           +V V  D  + +A+ L+RR +I  +PVV+    + VG ++ RD   L  A          
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDR-RLVGIVTQRD--LLRHARPDGRRPLRG 60

Query: 330 TAKNFLTA--VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387
             +       V   M             +VT   +  I EL+ LL     H + VVD + 
Sbjct: 61  RLRGRDKPETVGDIMSPP----------VVTVRPDTPIAELVPLLADGGHHHVPVVDEDR 110

Query: 388 NLEGVITLRDIIS 400
            L G++T  D+I+
Sbjct: 111 RLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           IM+   +V V  DEPV +A KLMR+  I    VV+KGG + VG IS+RD+
Sbjct: 62  IMT-RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGG-ELVGVISIRDL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 29/125 (23%)

Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKGGN--KAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333
           D  V +A +L  R  I G+PV E G      VG  + RDI FL                 
Sbjct: 98  DTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDIDFLSK--------------- 142

Query: 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVI 393
            ++ V    E+           +VT     T++E   +L   KI ++ +VD +G L G+I
Sbjct: 143 -VSVVMTMTED-----------LVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLI 190

Query: 394 TLRDI 398
           T +DI
Sbjct: 191 TRKDI 195

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 17/97 (17%)

Query: 217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
           +PVVD  +G +  I+T   +   +A            KK + +I    M+ N ++    D
Sbjct: 28  LPVVD-EDGRLVGIVTSWDISKAVAR----------DKKSVEDI----MTRN-VITATPD 71

Query: 277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           EP+  A + M R  I  +PVV+   N+ +G I+  DI
Sbjct: 72  EPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDI 107

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           +M+   +V V ED+ V +A +LMR  ++  +PVV+  G + VG +SL D+
Sbjct: 63  VMTRG-VVTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 34/123 (27%)

Query: 282 AFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341
             +L++  K+ G+PVV+K G + VG I+ +D   LL  PE                    
Sbjct: 15  VLELLKEYKVSGVPVVKKSG-ELVGIITRKD---LLRNPE-------------------- 50

Query: 342 MEEHHHEDSPLLSGM---VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI 398
                 E+   L       T S +  +KE   L+    I R+ VVD +G L G++T+ DI
Sbjct: 51  ------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADI 103

Query: 399 ISR 401
           +  
Sbjct: 104 VRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 26/127 (20%)

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYR 327
            + V +  D  + +A KLMR KK+  + VV+K  NK +G +SL  ++      + Y + +
Sbjct: 2   KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLE------QAYKEAK 54

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387
           S+  ++ +      +      D+ L             ++++ L+  +    + VVD +G
Sbjct: 55  SL--EDIMLEDVFTV----QPDASL-------------RDVLGLVLKRGPKYVPVVDEDG 95

Query: 388 NLEGVIT 394
            L G+IT
Sbjct: 96  KLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 14/126 (11%)

Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAPEIYHDYRSITAKNF 334
           D+PV + + LM      G+PVV+K G + +G I+ RDI +       +    R+ T  + 
Sbjct: 9   DDPVSKVWDLMLESGFTGLPVVQKAG-ELIGIITRRDIIRAGSVRTSVEDQQRTQTKAS- 66

Query: 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVIT 394
              V K M       +P+     + + + +I   + L+    I R+ VV+    L G++ 
Sbjct: 67  -PTVEKIMS------TPV----YSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVD 115

Query: 395 LRDIIS 400
             D++ 
Sbjct: 116 RHDVLK 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
           V    D  + +A +LM   ++  + VV+ G  + VG ++ RD++  + A           
Sbjct: 4   VTCSPDTTIREAARLMTEHRVSSLLVVDDG--RLVGIVTDRDLRNRVVAE---------- 51

Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
             +  T V + M           +  +T   + T+ E + L+  + IH + VVD +G L 
Sbjct: 52  GLDPDTPVSEVMT----------APPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLV 100

Query: 391 GVITLRDIIS 400
           GVI+  D++ 
Sbjct: 101 GVISATDLLR 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 17/107 (15%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           L+++Y +  +PVVD  +G +  I+T   +            FE+   K +SE+    M+ 
Sbjct: 19  LMAEYGISGLPVVD-DDGKLVGIVTNRDL-----------RFETDLDKPVSEV----MTP 62

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
            +++   E   + +A +L+   KI  +PVV+  G K  G I+++DI+
Sbjct: 63  ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG-KLKGLITVKDIE 108

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
           ++ V +D+ +    +++   KI G+PVV+    + VG +S  D+   +   +       +
Sbjct: 3   VITVKKDDTLRDVVEILLTGKISGVPVVD-NEGRVVGIVSEGDLIRKIYKGKGLFYVTLL 61

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTC-SRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
            +  FL   +   +    +   +++  V     + TI+++  ++  K I R+ VVD +G 
Sbjct: 62  YSVIFLDESKIK-KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGK 119

Query: 389 LEGVITLRDII 399
           L G+I+  DII
Sbjct: 120 LVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 22/131 (16%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
           ++ V  D  V +A  +M    IG + VV+    K VG I+ RD+   + +  +    R +
Sbjct: 3   VITVDPDTTVYEAANIMTENNIGRLIVVD--NEKPVGIITERDLVKKVVSRNL--KPREV 58

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNL 389
                ++             +PL    +T   N ++ E   L+    I R+ VVD +  L
Sbjct: 59  PVGEVMS-------------TPL----ITIDPNASLNEAAKLMAKHGIKRLPVVD-DDEL 100

Query: 390 EGVITLRDIIS 400
            G++T  DI+ 
Sbjct: 101 VGIVTTTDIVM 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
           I  V+ +  +L     M +  +G + VV+  G K VG I+ RD+ F           +  
Sbjct: 3   IATVHPEHSLLHVVDEMEKNGVGRVIVVDDNG-KPVGVITYRDLAFAEFEDNERGLPKKS 61

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGM-----VTCSRNHTIKELIHLLDSKKIHRIYVVD 384
                    ++Y   +  E   +   +     +T S N  + +   L+    I  + VVD
Sbjct: 62  IKMKRKAGQKRY--RYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119

Query: 385 FNGNLEGVITLRDIIS 400
            N N+ GVIT  DI  
Sbjct: 120 -NDNIVGVITKTDICR 134

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 49/189 (25%)

Query: 208 LLSKYKMKSIPVVDLGE--GTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIM 265
           L+ +  +  IPVV+ G+  G +  IIT+  +            F     K +SE+    M
Sbjct: 105 LMERKGISGIPVVEDGDMTGKLVGIITKRDIR-----------FVKDKGKPVSEV----M 149

Query: 266 SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHD 325
           +   ++ V E   + +A K++   +I  +PVV+K G   VG I+++DI            
Sbjct: 150 TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGE-LVGLITMKDIV----------- 197

Query: 326 YRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHL---------LDSKK 376
                 + F  A +        E+  L+ G    +R    +    L         +DS  
Sbjct: 198 ----KRRKFPHASKD-------ENGRLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSH 246

Query: 377 IHRIYVVDF 385
            H IYV+D 
Sbjct: 247 GHSIYVIDS 255

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 29/121 (23%)

Query: 279 VLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAV 338
           V +A +LM + +IGG+PVVE G  K VG I+ RD++         H  R          V
Sbjct: 12  VGRAARLMEKHRIGGLPVVEDG--KLVGIITSRDVRR-------AHPNR---------LV 53

Query: 339 RKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI 398
              M             +VT S   ++ E   L++ KKI R+ V+     L G+IT   I
Sbjct: 54  ADAMTRE----------VVTISPEASLLEAKRLMEEKKIERLPVLR-ERKLVGIITKGTI 102

Query: 399 I 399
            
Sbjct: 103 A 103

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 44.4 bits (106), Expect = 9e-05
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 17/107 (15%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           L+++Y +  +PVVD   G +  IIT   V            FE+   + +SE+    M+ 
Sbjct: 112 LMARYGISGVPVVD-ENGKLVGIITNRDVR-----------FETDLSQPVSEV----MTK 155

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
             +V V E   + +A +L+   +I  +PVV+  G +  G I+++DI+
Sbjct: 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-RLKGLITVKDIE 201

Length = 486

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLP-IMS 266
           L+  + +  +PV++   G +  I+T+  +   L     L   +   ++++  + +  IM+
Sbjct: 18  LMLDHDISRLPVIE--GGKLVGIVTEKDIADALRSFRPL-VRDRHQERRIRNLPVSDIMT 74

Query: 267 ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
              ++ +  D  V     LM    IGG+PVV+    K VG ++  DI
Sbjct: 75  RP-VITIEPDTSVSDVASLMLENNIGGLPVVD--DGKLVGIVTRTDI 118

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 66  VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV---EFAGIAVWILH 122
           V+ +  DTSL EA  +L +HRI + PVVD D         R +GIV   +    A     
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDR--------RLVGIVTQRDLLRHARPDGR 55

Query: 123 QSEPPSPRSSSPSSALAAAVNGMSKAA 149
           +      R       +      MS   
Sbjct: 56  RPLRGRLRGRDKPETVGDI---MSPPV 79

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 193 FLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESW 252
           F  + +  S    L  + KY    I V D  E  +  ++T +  I  L        FES+
Sbjct: 3   FPTIDEDASIREALHEMLKYNTNEIIVKD-NEEKLKGVVTFTD-ILDLDL------FESF 54

Query: 253 GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRD 312
            +KK+  I      +  +  V E++ + +A  +MR K+IG +PVV+   NK +G +  +D
Sbjct: 55  LEKKVFNI-----VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKD 107

Query: 313 I 313
           I
Sbjct: 108 I 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
             V+ +  DTSL EA+E++ ++ I   PVVD D         + +GIV
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDED--------GKLVGIV 46

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 24/139 (17%)

Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
            +V + ED+ +  A +LMR  +I  +PVV     K VG ++ RD+             R+
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVN-EDGKLVGLLTQRDL------------LRA 48

Query: 329 ITAKNFLTAVRKYMEEH--HHEDSPLLSGM----VTCSRNHTIKELIHLLDSKKIHRIYV 382
                 L+++    EE      D P+   M    +T + +  ++E   ++   KI  + V
Sbjct: 49  A-----LSSLSDNGEESLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPV 103

Query: 383 VDFNGNLEGVITLRDIISR 401
           VD  G L G+IT  D +  
Sbjct: 104 VDDKGTLVGIITRSDFLRL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 354 SGMV----TCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI 398
           SG+V    T + + T+ E + L+    I  + VVD NG L G+IT RD+
Sbjct: 91  SGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV 139

Length = 486

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 69 IKSDTSLAEAVEILAQHRILSAPVVD 94
             D S+ EAVE L + +I   PVVD
Sbjct: 6  FTPDMSVTEAVEKLLKSKISGGPVVD 31

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 16/106 (15%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           L + + +   PVVD  +G +  I+T S + H +A   GLE        K+ ++    M+ 
Sbjct: 18  LFNTHHIHGAPVVD--DGKLVGIVTLSDIAHAIAR--GLE------LAKVKDV----MTK 63

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           + ++ + EDE +  A +LM +  +G + V +  G + VG I+  DI
Sbjct: 64  D-VITIDEDEQLYDAIRLMNKHNVGRLIVTDDEG-RPVGIITRTDI 107

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           IM+   I+ V  ++ V+ A KLM    I G+PVV+   +  VG I+  DI
Sbjct: 86  IMT-EEIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 20/110 (18%)

Query: 204 TMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLP 263
            +L LL +YK+  +PVV    G +  IIT+  ++    E                ++ L 
Sbjct: 14  DVLELLKEYKVSGVPVVK-KSGELVGIITRKDLLRNPEE---------------EQLAL- 56

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           +M+ +    V  D+ V +A KLM    I  +PVV+    K VG +++ DI
Sbjct: 57  LMTRDPPT-VSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADI 103

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
           +T   + ++ + I++L    I R+ VVD NG L G++T  DI+  +V
Sbjct: 4   ITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV 50

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
           +T   + T+ E   L+  K I  + VVD  G L G+ + RDI+ ++      
Sbjct: 4   ITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGAS 55

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 358 TCSRNHTIKELIHLL-----DSKKIHRIYVVDFNGNLEGVITLRDIIS 400
               + T+ E +  L     D + I+ IYVVD  G L GV++LRD++ 
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL 48

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 25/125 (20%)

Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333
           +  V    ++  +K    I +   G  G K +G ++ RDI F+          +S     
Sbjct: 112 NHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--------KDKSTPVSE 163

Query: 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVI 393
            +T   K               +V  +   +++E   +L   +  ++ +V+ NG L  ++
Sbjct: 164 VMTPREK---------------LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV 208

Query: 394 TLRDI 398
           +  D+
Sbjct: 209 SRSDL 213

Length = 495

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 21/108 (19%)

Query: 294 IPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLL 353
             VV+  G + VG ISL D+              S  A+  +  V     +         
Sbjct: 28  FVVVDNEG-RYVGIISLADL---------RAIPTSQWAQTTVIQVMTPAAK--------- 68

Query: 354 SGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401
             +VT     ++ E++ LL+ + +  + VV+ +G + G+IT  D++ R
Sbjct: 69  --LVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
             V+ +  D ++AEA+ ++ +H I   PVVD D         R +GIV
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDD--------GRLVGIV 40

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           +M+ + +     DE +  A K M  + IG +PVV+  G + VG +S  D+
Sbjct: 61  VMTRDPVT-ASPDETLRDALKRMAERDIGRLPVVDDSG-RLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           +M+A   + +  D  V +A  LM  + I  +PVV+ G  + VG IS  D+
Sbjct: 62  VMTAP-PITIPPDATVFEALLLMLERGIHHLPVVDDG--RLVGVISATDL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII 399
           ++T + N T++E   L ++  IH   VVD +G L G++TL DI 
Sbjct: 3   LITLNPNATLREAARLFNTHHIHGAPVVD-DGKLVGIVTLSDIA 45

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
           VTCS + TI+E   L+   ++  + VVD +G L G++T RD+ +R+V
Sbjct: 4   VTCSPDTTIREAARLMTEHRVSSLLVVD-DGRLVGIVTDRDLRNRVV 49

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEI-GLPIMSANH--IVKV 273
           +PVV+  +G +  ++TQ  ++      A L      G++ L++   +P+       ++ V
Sbjct: 27  LPVVN-EDGKLVGLLTQRDLLR-----AALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80

Query: 274 YEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
             D P+ +A ++M   KIG +PVV+      VG I+  D 
Sbjct: 81  TPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDF 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 69  IKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
           I  D   AEA+E++ +++I + PVVD +         R +G++
Sbjct: 72  IDPDALAAEALELMEENKITALPVVDDN--------GRPVGVL 106

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           IM+   +V VY ++ +  A K         +PVV+    K +G +S  D+
Sbjct: 63  IMTKPPVV-VYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDL 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
           + V+ +  +TS+AEA  ++  + I   PVVD D         R +GIV
Sbjct: 2   TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD--------GRLVGIV 41

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 37.4 bits (88), Expect = 0.002
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%)

Query: 66  VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
            I +  D ++AEA+E++A++ I   PVVD D         + +GIV
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDD--------GKLVGIV 41

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 9/48 (18%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
             VI +K DTS+ +A+ +++++ + + PVVD           + +GI+
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD---------GKLVGII 45

Length = 117

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 66 VIEIKSDTSLAEAVEILAQHRILSAPVVD 94
          V+ +  DT+L EA+E+L ++ I   PVVD
Sbjct: 2  VVTVSPDTTLEEALELLRENGIRRLPVVD 30

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 22/122 (18%)

Query: 284 KLMRRKKIGGIPVVEKGGNKAVGNISLRDI-----QFLLTAPEIYHDYRSITAKNFLTAV 338
           ++  + K   + VVE   N+ VG IS RD       FL TA E   D             
Sbjct: 17  EIFEKHKFHHLLVVE--DNELVGVISDRDYLKAISPFLGTAGETEKD-----LATLNRRA 69

Query: 339 RKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI 398
            + M              +T S +  + E   LL    I  + VVD NG L G+IT +D+
Sbjct: 70  HQIMTRD----------PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDL 119

Query: 399 IS 400
           + 
Sbjct: 120 LK 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M+ N  V    D PVL+A  LM + K   +PVV+K G           +  LL   ++ 
Sbjct: 63  VMTPN-PVCATSDTPVLEALHLMVQGKFRHLPVVDKSG----------QVVGLLDVTKLT 111

Query: 324 HD 325
           H 
Sbjct: 112 HA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 25/125 (20%)

Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333
           D  V    ++  +K   GIPV E G  G K +G ++ RDI FL                +
Sbjct: 10  DHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL---------------TD 54

Query: 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVI 393
             T + + M       +P    +V      T++E   +L   K  ++ +V+ +G L  ++
Sbjct: 55  SETPLSEVM-------TPREV-LVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALV 106

Query: 394 TLRDI 398
           T  D+
Sbjct: 107 TRSDL 111

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 8/46 (17%)

Query: 66  VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
           V+ +  DTSL EA E++ +H I   PVVD +         R +GIV
Sbjct: 68  VVTVSPDTSLEEAAELMLEHGIRRLPVVDDE--------GRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 27/128 (21%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA--ECAGLEWFES-------------- 251
           LL + K+   PV+D   G +  I+++S ++ +L   + +G  W  S              
Sbjct: 18  LLRENKISGAPVLD--GGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN 75

Query: 252 WG--KKKLSEIG----LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAV 305
           W   K+ L++ G      IM+   ++ +  D  +  A +LM R KI  +PVVE    + V
Sbjct: 76  WEETKRALTDAGKMKVRDIMTKK-VITISPDASIEDAAELMVRHKIKRLPVVE--DGRLV 132

Query: 306 GNISLRDI 313
           G ++  DI
Sbjct: 133 GIVTRGDI 140

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 21/128 (16%)

Query: 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331
            V  D  +  A   M RK +G   VV++ G + VG  +  D++  L       D  ++  
Sbjct: 6   LVSPDTSLKDALLEMSRKGLGMTAVVDEDG-RLVGIFTDGDLRRALEK---GLDILTLPV 61

Query: 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEG 391
            + +T             +P      T   +    E + L++  KI  + VVD NG   G
Sbjct: 62  ADVMTR------------NP-----KTIDPDALAAEALELMEENKITALPVVDDNGRPVG 104

Query: 392 VITLRDII 399
           V+ + D++
Sbjct: 105 VLHIHDLL 112

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 8/47 (17%)

Query: 65  QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
            VI + +D    E   +  ++ +L+ PVVD +         R +GI+
Sbjct: 62  DVISVSADDDQEEVARLFEKYDLLALPVVDEE--------GRLVGII 100

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           IM+ +  + V  D PV +A KL+    I  +PVV+    + +G I+ +D+
Sbjct: 72  IMTRD-PITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 11/45 (24%), Positives = 26/45 (57%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401
           +T     + +E++ L+  + I  + ++D  G + G+ TL D++S+
Sbjct: 69  ITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLSK 113

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.97
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.95
COG2524	294	Predicted transcriptional regulator, contains C-te	99.76
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.74
COG2524	294	Predicted transcriptional regulator, contains C-te	99.7
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.69
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.62
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.61
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.6
COG3620	187	Predicted transcriptional regulator with C-termina	99.58
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.57
COG3620	187	Predicted transcriptional regulator with C-termina	99.56
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.56
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.55
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.54
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.54
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.54
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.54
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.53
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.52
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.51
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.51
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.5
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.5
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.5
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.5
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.49
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.48
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.48
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.48
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.47
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.47
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.47
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.47
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.46
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.46
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.46
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.46
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.46
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.45
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.45
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.45
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.45
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.45
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.45
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.45
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.45
COG2905	610	Predicted signal-transduction protein containing c	99.45
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.44
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.44
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.44
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.44
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.43
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.43
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.42
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.42
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.42
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.42
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.41
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.41
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.41
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.41
PRK11573	413	hypothetical protein; Provisional	99.41
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.41
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.41
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.41
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.41
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.4
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.4
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.4
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.4
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.4
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.4
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.39
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.39
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.39
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.39
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.39
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.39
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.39
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.38
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.38
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.38
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.37
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.37
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.37
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.37
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.37
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.37
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.37
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.37
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.37
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.36
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.36
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.36
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.36
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.36
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.36
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.35
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.35
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.35
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.35
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.35
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.35
COG4109	432	Predicted transcriptional regulator containing CBS	99.35
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.35
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.34
COG2905	610	Predicted signal-transduction protein containing c	99.34
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.33
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.33
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.33
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.33
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.33
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.32
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.32
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.32
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.32
COG0517	117	FOG: CBS domain [General function prediction only]	99.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.32
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.32
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.32
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.31
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.31
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.31
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.3
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.3
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.3
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.29
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.29
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.29
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.29
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.29
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.29
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.28
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.28
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.28
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.28
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.27
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.26
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.26
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.26
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.25
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.25
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.25
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.25
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.25
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.24
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.24
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.24
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.24
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.24
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.23
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.23
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.21
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.21
COG0517	117	FOG: CBS domain [General function prediction only]	99.2
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.2
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.19
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.19
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.19
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.18
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.18
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.18
COG4109	432	Predicted transcriptional regulator containing CBS	99.17
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.17
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.17
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.16
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.16
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.15
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.14
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.12
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.1
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.08
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.07
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.06
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.04
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.02
PRK11573	413	hypothetical protein; Provisional	98.98
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.91
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.85
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.81
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.8
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.78
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.54
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.49
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.48
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.36
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.35
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.26
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.26
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.21
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.03
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.99
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.93
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.83
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.75
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.39
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.22
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.16
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.93
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	94.83
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.6
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	94.06
KOG2118	498	consensus Predicted membrane protein, contains two	89.48
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	89.32
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	84.39

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.97  E-value=9.1e-29  Score=241.17  Aligned_cols=324  Identities=28%  Similarity=0.439  Sum_probs=256.6

Q ss_pred             HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353           46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE  125 (426)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~  125 (426)
                      .+.+.+....|....+...+++.++..+++.+|+..|..+.++++||+|...       ++++|++++.|++..++..+.
T Consensus        58 ~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~~~  130 (381)
T KOG1764|consen   58 TLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRYYK  130 (381)
T ss_pred             HHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHhhc
Confidence            4666666666666666677999999999999999999999999999999886       899999999999999887653


Q ss_pred             CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353          126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM  205 (426)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~  205 (426)
                      ....                                  .+.+..++.........+..+.....+.+++.+.+..++.++
T Consensus       131 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~  176 (381)
T KOG1764|consen  131 SKSS----------------------------------LDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDA  176 (381)
T ss_pred             cCCc----------------------------------HHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHH
Confidence            2010                                  001111111112222233333333333355899999999999


Q ss_pred             HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHH
Q 014353          206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKL  285 (426)
Q Consensus       206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~  285 (426)
                      ...+.++++|++||+|.+.+++.+++|+..+++++..+...-++..+...++.+++.+.+.  .+..+..++++.+|+++
T Consensus       177 ~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~--~i~~i~~~~~v~~al~~  254 (381)
T KOG1764|consen  177 VLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS--NIASISEDTPVIEALKI  254 (381)
T ss_pred             HHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh--hheeecCCCcHHHHHHH
Confidence            9999999999999999767899999999999999987766555778888999998866554  49999999999999999


Q ss_pred             HHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCH
Q 014353          286 MRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTI  365 (426)
Q Consensus       286 m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl  365 (426)
                      |..++++++||||..| +.+|+++..|+......+..+..       +... +.+.....    ......+++|++++||
T Consensus       255 m~~~~is~lpvV~~~g-~~v~~~s~~Dv~~l~~~~~~~~~-------~~~~-l~~~~~~~----~~~~~~vvtc~~~ssL  321 (381)
T KOG1764|consen  255 MSERRISALPVVDENG-KKVGNYSRFDVIHLAREGTYNNL-------DLSC-LSEALSHR----PIRFEGVVTCRPTSTL  321 (381)
T ss_pred             HHhcCcCcceEEcCCC-ceecceehhhhhhhhhcCccCcc-------chhH-HHHHhhhc----ccccCccEEEeecchH
Confidence            9999999999999998 77999999999999877654321       1111 33332221    1223358999999999


Q ss_pred             HHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcccccccccccCCCCCC
Q 014353          366 KELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSR  425 (426)
Q Consensus       366 ~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~~~~~~~~~~~~~~~~  425 (426)
                      .+++.+|..+++||+||||++|+++|+||++|++.++..++.++....+++...-..+.|
T Consensus       322 ~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~~~~~~~~~~~~~~~~~~~  381 (381)
T KOG1764|consen  322 AEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPSGGTPDAPSSSMSTSENPR  381 (381)
T ss_pred             HHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCccCCCCCCcCccccccCCCC
Confidence            999999999999999999999999999999999999999999999999998887776654

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.95  E-value=4.9e-28  Score=217.38  Aligned_cols=168  Identities=23%  Similarity=0.424  Sum_probs=148.2

Q ss_pred             cCCCCCchhhccccccchhhhcCCC-----CChhH-----------HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHH
Q 014353           16 QDSPRSPEAQLGMKVEDLWDVLEPQ-----LSPTE-----------KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAV   79 (426)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~   79 (426)
                      -+.+|+|.+|.||+.+|+|++|+++     |+++|           +|+|.++.++|.++  |+++|+++.+++++.+|+
T Consensus       191 gT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadI--MSrdVvtv~~~ts~dhA~  268 (382)
T COG3448         191 GTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADI--MSRDVVTVSTDTSIDHAR  268 (382)
T ss_pred             CCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHh--cCccceecCCcCChHHHH
Confidence            4567889999999999999999886     88874           58999999999999  999999999999999999


Q ss_pred             HHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcc
Q 014353           80 EILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESA  159 (426)
Q Consensus        80 ~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  159 (426)
                      ++|.+|+++++||+|+.        .+++||||++|++..    ..+ .                               
T Consensus       269 ~ll~~H~ikaLPV~d~~--------~rl~GiVt~~dl~~~----a~~-~-------------------------------  304 (382)
T COG3448         269 KLLQEHRIKALPVLDEH--------RRLVGIVTQRDLLKH----ARP-S-------------------------------  304 (382)
T ss_pred             HHHHHcCcccccccccc--------cceeeeeeHHHHhhc----cCc-c-------------------------------
Confidence            99999999999999999        899999999999753    211 0                               


Q ss_pred             cccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHH
Q 014353          160 SMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHM  239 (426)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~  239 (426)
                            ++   +.-......+++.+|++    ++.++.++++..+++..|.+.+.|++||+| +.|+++|||||+|++.+
T Consensus       305 ------p~---qrlr~~~~~~vk~imt~----~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaa  370 (382)
T COG3448         305 ------PF---QRLRFLRPPTVKGIMTT----PVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAA  370 (382)
T ss_pred             ------hH---HHhhccCCCcccccccC----cceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHH
Confidence                  11   12224567789999998    999999999999999999999999999999 48999999999999999


Q ss_pred             HHhc
Q 014353          240 LAEC  243 (426)
Q Consensus       240 l~~~  243 (426)
                      +++.
T Consensus       371 l~r~  374 (382)
T COG3448         371 LYRN  374 (382)
T ss_pred             HHHH
Confidence            9754

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.76  E-value=7.8e-18  Score=149.44  Aligned_cols=124  Identities=32%  Similarity=0.519  Sum_probs=109.7

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA  331 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~  331 (426)
                      +...++.+    +|+++ ++++.+++++.++.++|.++++++.||+|++  +++|++|.+|+..++..+..         
T Consensus       169 iPk~~V~~----~~s~~-~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~~---------  232 (294)
T COG2524         169 IPKEKVKN----LMSKK-LITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGNL---------  232 (294)
T ss_pred             cCcchhhh----hccCC-ceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCCc---------
Confidence            33466777    88875 9999999999999999999999999999984  89999999999999887642         


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                         ...++++|.          ++++++++++.+.+|+++|..+++.++.|+|++|+++|+||++|||+.++.
T Consensus       233 ---~~kV~~~M~----------k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         233 ---DAKVSDYMR----------KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             ---cccHHHHhc----------cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence               234555554          499999999999999999999999999999999999999999999999875

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.74  E-value=2.4e-17  Score=148.85  Aligned_cols=296  Identities=20%  Similarity=0.234  Sum_probs=188.2

Q ss_pred             CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEE--------eehHHHHHHHHhhcCCCCCCCCCC
Q 014353           63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGI--------VEFAGIAVWILHQSEPPSPRSSSP  134 (426)
Q Consensus        63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGi--------vt~~di~~~l~~~~~~~~~~~~~~  134 (426)
                      +.-++..=|+.++.+=|.++--|-+.++.=+-.         ..++|=        |++.=.+.+.+.+.-     .++.
T Consensus        66 SAVLLFavpaSPLAQPwsiiGGNlvaAlvgvtv---------a~~vgd~~la~~lavsLaI~~M~~~rcLH-----PPsg  131 (382)
T COG3448          66 SAVLLFAVPASPLAQPWSIIGGNLVAALVGVTV---------AYFVGDPVLASGLAVSLAIGAMFALRCLH-----PPSG  131 (382)
T ss_pred             ceEEEEeccCCccccchhhhcchHHHHHHhhhh---------hhhhCChHHHHHHHHHHHHHHHHHhcCCC-----CCch
Confidence            566777788999999999988887666543322         233330        111111222233332     4567


Q ss_pred             chhHHHhhhcCc----ccc--ccccCCCCcccccccchhhcccccccccccchhhhccc-cccCCcEEecCCCCHHHHHH
Q 014353          135 SSALAAAVNGMS----KAA--LFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGS-FRWAPFLALQKSNSFLTMLL  207 (426)
Q Consensus       135 ~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~-~~~~~~~~v~~~~~l~~~l~  207 (426)
                      ++++++...|-.    +|+  ......++-....++..|.++.+ ..|+......-.+. ...+|.....-.-+-+|+-.
T Consensus       132 AvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~lynnl~~-r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~  210 (382)
T COG3448         132 AVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLYNNLTR-RTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDA  210 (382)
T ss_pred             HHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHHHHHhc-CCCCCccCCCcccccCCCCCCchhccCCCHHHHHH
Confidence            888888777533    111  12222222222223334444332 22222111110000 00123333333334455555


Q ss_pred             HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHH
Q 014353          208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMR  287 (426)
Q Consensus       208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~  287 (426)
                      .+.+.+-    .+|         |++.|+-+.+.+-.............+.+    +|+++ +++++.++++.++.++|.
T Consensus       211 aL~~~~E----~lD---------IdrddLe~llr~~elqa~~R~~~~Ltcad----IMSrd-Vvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         211 ALQRLGE----TLD---------IDRDDLERLLRETELQALRRRMGELTCAD----IMSRD-VVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             HHHhcCc----eec---------CCHHHHHHHHHHHHHHHHHHHhccccHHH----hcCcc-ceecCCcCChHHHHHHHH
Confidence            5544332    355         55667655554433333334455677888    99986 999999999999999999


Q ss_pred             hcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHH
Q 014353          288 RKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKE  367 (426)
Q Consensus       288 ~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~  367 (426)
                      +++++++||+|++. +++|+|+.+|+.+....+             +...++ ++.. ..+..+|+.++.++.++++..+
T Consensus       273 ~H~ikaLPV~d~~~-rl~GiVt~~dl~~~a~~~-------------p~qrlr-~~~~-~~vk~imt~~v~tv~pdtpa~~  336 (382)
T COG3448         273 EHRIKALPVLDEHR-RLVGIVTQRDLLKHARPS-------------PFQRLR-FLRP-PTVKGIMTTPVVTVRPDTPAVE  336 (382)
T ss_pred             HcCccccccccccc-ceeeeeeHHHHhhccCcc-------------hHHHhh-ccCC-CcccccccCcceeecCCCcHHH
Confidence            99999999999987 999999999999875431             112223 2222 3677899999999999999999


Q ss_pred             HHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          368 LIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       368 ~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                      ++-.+.+.+.|++||+|++|+++||||++|++.+++.+..
T Consensus       337 lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~  376 (382)
T COG3448         337 LVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS  376 (382)
T ss_pred             HHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987643

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.70  E-value=1.4e-16  Score=141.55  Aligned_cols=126  Identities=25%  Similarity=0.424  Sum_probs=115.2

Q ss_pred             cccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhh
Q 014353          173 SEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESW  252 (426)
Q Consensus       173 ~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~  252 (426)
                      -...+..++.++|++    +++++.+++++.++..+|.+++++..||+|  +++++|++|.+|+..++.++..       
T Consensus       166 m~siPk~~V~~~~s~----~~i~v~~d~tl~eaak~f~~~~i~GaPVvd--~dk~vGiit~~dI~~aia~g~~-------  232 (294)
T COG2524         166 MVSIPKEKVKNLMSK----KLITVRPDDTLREAAKLFYEKGIRGAPVVD--DDKIVGIITLSDIAKAIANGNL-------  232 (294)
T ss_pred             eeecCcchhhhhccC----CceEecCCccHHHHHHHHHHcCccCCceec--CCceEEEEEHHHHHHHHHcCCc-------
Confidence            345777899999998    999999999999999999999999999999  4599999999999999987632       


Q ss_pred             ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          253 GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       253 ~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                       ...+++    +|+++ ++++..++.+.||+++|..++++++.|+|.+| +++|+||+.|++..+.
T Consensus       233 -~~kV~~----~M~k~-vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g-kpvGiITrTDIL~~ia  291 (294)
T COG2524         233 -DAKVSD----YMRKN-VITINEDEDIYDAIRLMNKNNVGRLLVTDSNG-KPVGIITRTDILTRIA  291 (294)
T ss_pred             -cccHHH----HhccC-CceEcCchhHHHHHHHHHhcCcceEEEEccCC-cEEEEEehHHHHHHhh
Confidence             367888    89986 99999999999999999999999999999888 9999999999998764

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.69  E-value=2.1e-16  Score=163.97  Aligned_cols=305  Identities=15%  Similarity=0.177  Sum_probs=193.4

Q ss_pred             CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCC
Q 014353           54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSS  133 (426)
Q Consensus        54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~  133 (426)
                      .++.++  |.++++++++++++.+|+++|.+++++.+||+|++        |+++|+|+..|+..+++...+....+...
T Consensus        68 ~~V~di--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~~~~~  137 (546)
T PRK14869         68 PQVRDL--EIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEILSKSP  137 (546)
T ss_pred             CcHHHh--cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhhhhcC
Confidence            567777  88899999999999999999999999999999988        89999999999999887644211111111


Q ss_pred             CchhHHHhhhcCccccccccC-CCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          134 PSSALAAAVNGMSKAALFKDL-GPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       134 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                      +....++...+..      .+ +........+.+        .........+......+.++.+...   .+.+..+.+.
T Consensus       138 ~t~~~i~~~L~~~------~l~~~~~~~~~~~~~--------~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~  200 (546)
T PRK14869        138 TSLENIIRTLDGE------VLVGAEEDKVEEGKV--------VVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEA  200 (546)
T ss_pred             CCHHHHHHhcCcE------EEecCcccccccccE--------EEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHc
Confidence            1111111111110      00 000000000000        0000011112222222345555433   3445567888


Q ss_pred             CCcEeEEEeCC-----------CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcc-cCCeeEeCCCCcHH
Q 014353          213 KMKSIPVVDLG-----------EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMS-ANHIVKVYEDEPVL  280 (426)
Q Consensus       213 ~~~~ipVvd~~-----------~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~-~~~~~~v~~~~~v~  280 (426)
                      ++.+++|+...           ...+.++.|..|.+........        ..++.+    +|+ .+ ++++.+++++.
T Consensus       201 ~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~~--------~~~V~~----iM~~~~-~~~~~~~~~~~  267 (546)
T PRK14869        201 GVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLINQ--------SIPVSY----IMTTED-LVTFSKDDYLE  267 (546)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhhc--------CCCHHH----hccCCC-cEEECCCCcHH
Confidence            99999887521           2358899999998888754321        457888    898 54 99999999999


Q ss_pred             HHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccc-ccccccc-HHHHH-HHHHHHhhhcCCCCCCCcCCce
Q 014353          281 QAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY-HDYRSIT-AKNFL-TAVRKYMEEHHHEDSPLLSGMV  357 (426)
Q Consensus       281 ~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~-~~~~~~~-~~~~~-~~v~~~~~~~~~~~~~~~~~~~  357 (426)
                      ++.+.|.+++++.+||+|++| +++|+||.+|++......-.. +...... ..... ..+.+++. ++..++++...++
T Consensus       268 ~~~~~m~~~~~~~~PVvd~~g-~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiD-HH~~~~~~~~~pi  345 (546)
T PRK14869        268 DVKEVMLKSRYRSYPVVDEDG-KVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIID-HHRLGDIQTSNPI  345 (546)
T ss_pred             HHHHHHHhcCCCceEEEcCCC-CEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEec-CCccCCCCCCCCc
Confidence            999999999999999999988 999999999999875432110 1000000 00000 00111121 2245566766766


Q ss_pred             ee---cCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          358 TC---SRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       358 ~v---~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                      .+   +...+...+.++|.+.++...+++. ...+.||+|-++.++.
T Consensus       346 ~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        346 FFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS  391 (546)
T ss_pred             EEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence            55   5578888999999999988877775 3468888888877653

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=5.8e-15  Score=117.45  Aligned_cols=93  Identities=26%  Similarity=0.386  Sum_probs=86.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++++.+++++.++.+.|.+++++++||+|++ + +++|+||..|+.+.+.                              
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~-~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQ-QFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCC-EEEEEEEHHHHhhhee------------------------------
Confidence            7899999999999999999999999999975 6 9999999999986521                              


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN-GNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~-~~liGvIT~~Dll~  400 (426)
                             +.++.+++++.++++.|.+++++++||+|++ |+++|+||.+|+++
T Consensus        52 -------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 -------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             -------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence                   5799999999999999999999999999987 89999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.61  E-value=2.5e-14  Score=140.07  Aligned_cols=200  Identities=21%  Similarity=0.268  Sum_probs=153.3

Q ss_pred             CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhh
Q 014353           63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAV  142 (426)
Q Consensus        63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~  142 (426)
                      .++++.+.+..++.+|...|.+++++.+||.|.++       +.+++++|.+-|++++......-               
T Consensus       161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~-------~~v~~ilt~~rIl~~l~~~~~~~---------------  218 (381)
T KOG1764|consen  161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET-------GEVLYILTQRRILKFLWLNGRLL---------------  218 (381)
T ss_pred             CCCceeecCcHHHHHHHHHHHhCCccceeeecccc-------cceeeehhHHHHHHHHHHhhccc---------------
Confidence            44559999999999999999999999999999655       89999999999999987543110               


Q ss_pred             hcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC
Q 014353          143 NGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL  222 (426)
Q Consensus       143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~  222 (426)
                                                   ..+.+...++.++-- ..|..+..+..++++.++++.|.++++..+||++.
T Consensus       219 -----------------------------~~~~~l~~s~~dl~i-g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~  268 (381)
T KOG1764|consen  219 -----------------------------PLPSLLSKSLSDLGI-GTWSNIASISEDTPVIEALKIMSERRISALPVVDE  268 (381)
T ss_pred             -----------------------------ccHHHhhCCHHHhCc-chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence                                         011222334444322 23446888999999999999999999999999995


Q ss_pred             CCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccc-cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC
Q 014353          223 GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIG-LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG  301 (426)
Q Consensus       223 ~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~-~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~  301 (426)
                       .|..+|+++..|+................    +.... ..-...+++++|.++.++.+++..|..+++++++|||++|
T Consensus       269 -~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~----l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~  343 (381)
T KOG1764|consen  269 -NGKKVGNYSRFDVIHLAREGTYNNLDLSC----LSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDG  343 (381)
T ss_pred             -CCceecceehhhhhhhhhcCccCccchhH----HHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCC
Confidence             77779999999998887654322111110    11110 0012234589999999999999999999999999999988


Q ss_pred             CeEEEEEeHHHHHHHhhCC
Q 014353          302 NKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       302 ~~lvGiIs~~Dl~~~~~~~  320 (426)
                       .++|+||.+|++.++...
T Consensus       344 -~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  344 -VLVGVISLSDILSYLVLT  361 (381)
T ss_pred             -cEEEEeeHHHHHHHHHhC
Confidence             999999999999998643

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.5e-14  Score=119.22  Aligned_cols=118  Identities=27%  Similarity=0.524  Sum_probs=94.5

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.+++++.+||+|++| +++|+++.+|++.+...+... .. ..+       +.+.+.    .
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~-~~~Giv~~~dl~~~~~~~~~~-~~-~~~-------~~~~~~----~   67 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENG-KVVDVYSRFDVINLAKEGAYN-NL-DLT-------VGEALE----R   67 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCC-eEEEEEeHHHHHHHHhcCccc-cc-cCC-------HHHHHh----h
Confidence            378999999999999999999999999999887 999999999999875433210 00 011       111111    1


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      ...|..++.++.+++++.++++.|.+++.+++||+|++|+++|+||++|+++
T Consensus        68 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          68 RSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             cccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            1234557899999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.58  E-value=4.6e-14  Score=116.47  Aligned_cols=137  Identities=29%  Similarity=0.399  Sum_probs=107.7

Q ss_pred             HHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHH
Q 014353          233 QSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRD  312 (426)
Q Consensus       233 ~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~D  312 (426)
                      ...++++|.++...       ...+..    +|+. +++.|.+++++.++.++|.++|++++||+++ + +++|-||.+|
T Consensus        50 ~k~Il~aL~e~e~~-------~ita~~----iM~s-pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~-k~VGsItE~~  115 (187)
T COG3620          50 VKRILEALEEAEKT-------RITAKT----IMHS-PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-D-KVVGSITEND  115 (187)
T ss_pred             HHHHHHHHHHhhcc-------eEeHhh----hccC-CeeEECchhhHHHHHHHHHHcCCccCceeeC-C-eeeeeecHHH
Confidence            34555565544331       234455    8886 4999999999999999999999999999998 5 9999999999


Q ss_pred             HHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEE
Q 014353          313 IQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGV  392 (426)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGv  392 (426)
                      |.+++..+.  ..       -....++++|.+          +..++++++++..+-+++..++  .+.|+ ++|+++|+
T Consensus       116 iv~~~le~~--e~-------i~~~~vr~vM~e----------~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGI  173 (187)
T COG3620         116 IVRALLEGM--ES-------IRSLRVREVMGE----------PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGI  173 (187)
T ss_pred             HHHHHhccc--cc-------hhhhhHHHHhcC----------CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEE
Confidence            999976542  11       123456777766          8999999999999998888775  46677 57999999


Q ss_pred             EeHHHHHHHHHhC
Q 014353          393 ITLRDIISRLVHE  405 (426)
Q Consensus       393 IT~~Dll~~l~~~  405 (426)
                      ||+.||++.+.+.
T Consensus       174 ITk~DI~k~~~~~  186 (187)
T COG3620         174 ITKADIMKLLAGT  186 (187)
T ss_pred             EeHHHHHHHHhcc
Confidence            9999999988753

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.57  E-value=3.3e-14  Score=115.57  Aligned_cols=108  Identities=20%  Similarity=0.345  Sum_probs=91.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++.+++++.++++.|.+.+.+.++|+|+++ +++|+|+..|+.+... ..    +.       ..++.          
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~-~~----~~-------~~~v~----------   59 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDEEN-KVLGQVTLSDLLEIGP-ND----YE-------TLKVC----------   59 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-CEEEEEEHHHHHhhcc-cc----cc-------ccChh----------
Confidence            78899999999999999999999999999887 9999999999987421 11    00       01233          


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      ++|..++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++
T Consensus        60 ~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          60 EVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             heeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            344457889999999999999999999999999998899999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.56  E-value=5.2e-14  Score=116.18  Aligned_cols=121  Identities=25%  Similarity=0.464  Sum_probs=104.0

Q ss_pred             cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      .++|..+  |+++++.+.|++++.+|+++|+++++..+||+++         ++++|-||..+|.+..++..        
T Consensus        64 ~ita~~i--M~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~---------~k~VGsItE~~iv~~~le~~--------  124 (187)
T COG3620          64 RITAKTI--MHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE---------DKVVGSITENDIVRALLEGM--------  124 (187)
T ss_pred             eEeHhhh--ccCCeeEECchhhHHHHHHHHHHcCCccCceeeC---------CeeeeeecHHHHHHHHhccc--------
Confidence            5677777  9999999999999999999999999999999999         59999999999999877542        


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                                                               +.....+++++|+.    +|.+++++.++.-.-.++-  
T Consensus       125 -----------------------------------------e~i~~~~vr~vM~e----~fP~Vs~~~~l~vI~~LL~--  157 (187)
T COG3620         125 -----------------------------------------ESIRSLRVREVMGE----PFPTVSPDESLNVISQLLE--  157 (187)
T ss_pred             -----------------------------------------cchhhhhHHHHhcC----CCCcCCCCCCHHHHHHHHh--
Confidence                                                     12335689999997    9999999999987777774  


Q ss_pred             CCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353          213 KMKSIPVVDLGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~  241 (426)
                      ...++.|++  +|+++||||..|+++.+.
T Consensus       158 ~~~AVlV~e--~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         158 EHPAVLVVE--NGKVVGIITKADIMKLLA  184 (187)
T ss_pred             hCCeEEEEe--CCceEEEEeHHHHHHHHh
Confidence            446677776  899999999999998875

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.6e-14  Score=114.78  Aligned_cols=111  Identities=20%  Similarity=0.300  Sum_probs=93.0

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.++..+||+|++| +++|+++.+|+.+........         ....++.+++.      
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g-~~~G~vt~~dl~~~~~~~~~~---------~~~~~v~~~~~------   66 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHG-KLAGVLTKTDVVRQMGRCGGP---------GCTAPVENVMT------   66 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCC-CEEEEEehHHHHHHHhhcCCC---------cccCCHHHHhc------
Confidence            77889999999999999999999999999888 999999999998765321100         01123444443      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          .++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus        67 ----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          67 ----RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             ----CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence                38899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.55  E-value=7.6e-14  Score=138.89  Aligned_cols=131  Identities=20%  Similarity=0.300  Sum_probs=110.8

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      +.+.++++    +|++ .++++++.++++.++++.+.+++++++||++++.++++|+++.+|++......       .. 
T Consensus       188 l~~~~v~d----iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~-------~~-  255 (408)
T TIGR03520       188 FGNTDTKQ----VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK-------NF-  255 (408)
T ss_pred             cCCCEeee----eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC-------CC-
Confidence            44677888    8997 45999999999999999999999999999987645899999999998764321       01 


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF  410 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~  410 (426)
                            .+.+++           +++.+++++.++.++++.|.+++.|.++|+|+.|.++|+||++||+..+++++....
T Consensus       256 ------~l~~~~-----------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~  318 (408)
T TIGR03520       256 ------DWQSLL-----------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEF  318 (408)
T ss_pred             ------CHHHHc-----------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcC
Confidence                  123332           267899999999999999999999999999999999999999999999999887655


Q ss_pred             c
Q 014353          411 G  411 (426)
Q Consensus       411 ~  411 (426)
                      +
T Consensus       319 d  319 (408)
T TIGR03520       319 D  319 (408)
T ss_pred             C
Confidence            4

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=7.9e-14  Score=110.40  Aligned_cols=93  Identities=25%  Similarity=0.463  Sum_probs=86.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++.+++++.++++.|.+.+++.+||+|++| +++|+++.+|+....                                
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           3 VPTVWEETPLPVAVRIMELANVKALPVLDDDG-KLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             ccEeCCCCcHHHHHHHHHHcCCCeEEEECCCC-CEEEEEEHHHHhcCC--------------------------------
Confidence            78899999999999999999999999999887 999999999997642                                


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                           .+.++.+++++.++++.|.+++.+++||+|++|+++|+||++|+++
T Consensus        50 -----~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 -----EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             -----CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                 1579999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.54  E-value=1.4e-13  Score=130.91  Aligned_cols=133  Identities=14%  Similarity=0.337  Sum_probs=110.4

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      +...++++    +|++ .+++++..++++.++++.+.+.+++++||++++.++++|+|+.+|++.....+..     .. 
T Consensus        64 l~~~~V~d----iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~-----~~-  133 (292)
T PRK15094         64 IADQRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE-----AF-  133 (292)
T ss_pred             cCCCEEeE----EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC-----cC-
Confidence            44677888    8987 2599999999999999999999999999999763489999999999876432110     00 


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF  410 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~  410 (426)
                            .+.+++.           ++.+++++.++.++++.|.+++.|.++|+|+.|.++|+||+.||+..+.+++...+
T Consensus       134 ------~l~~l~r-----------~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~  196 (292)
T PRK15094        134 ------SMDKVLR-----------QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEY  196 (292)
T ss_pred             ------CHHHHcC-----------CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccc
Confidence                  1333332           56799999999999999999999999999999999999999999999999987765


Q ss_pred             c
Q 014353          411 G  411 (426)
Q Consensus       411 ~  411 (426)
                      +
T Consensus       197 d  197 (292)
T PRK15094        197 D  197 (292)
T ss_pred             c
Confidence            4

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.54  E-value=7.5e-14  Score=115.54  Aligned_cols=122  Identities=25%  Similarity=0.347  Sum_probs=95.4

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++.+.|.+.+++++||+|++| +++|+++.+|++..+............+          .......+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~i   71 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR-RLVGIVTQRDLLRHARPDGRRPLRGRLR----------GRDKPETV   71 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCC-CEEEEEEHHHHHhhhcccccchhhhhhh----------cccccccH
Confidence            378999999999999999999999999999877 9999999999988764322110000000          00011123


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                      .++|...+.++.+++++.++++.|.+++.+++||+|++|+++|+||..|++++
T Consensus        72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~  124 (124)
T cd04600          72 GDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             HHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence            34455589999999999999999999999999999988999999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.5e-13  Score=114.28  Aligned_cols=123  Identities=42%  Similarity=0.650  Sum_probs=95.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+++++++||+|+++ +++|+++..|+++....+....   ..+...+.    .+........
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~   74 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDDLL---LYRTITFK----ELSEKFTDSD   74 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEECCCC-cEEEEEEHHHhhhhhcCcchhh---cccchhhh----hhhhhccccc
Confidence            78899999999999999999999999999887 9999999999998754321100   00000000    0001111222


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      ..+..++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+||++
T Consensus        75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            355668999999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.8e-13  Score=113.26  Aligned_cols=118  Identities=21%  Similarity=0.323  Sum_probs=91.9

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHH  347 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  347 (426)
                      ++.++.+++++.++++.|.+.+++++||+|++ + +++|+|+.+|+++.+..+...     .+..+.....      ...
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~-~~~Giv~~~dl~~~~~~~~~~-----~~~~~~~~~~------~~~   69 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESG-EVIGILSQRRLVEFLWENARS-----FPGLDPLYPI------PLR   69 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCC-cEEEEEEHHHHHHHHHHhHHh-----ccchhhhhhh------hhh
Confidence            47889999999999999999999999999987 7 999999999999875432100     0000000000      001


Q ss_pred             CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHH
Q 014353          348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI  398 (426)
Q Consensus       348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dl  398 (426)
                      ....|..++.++++++++.+|++.|.+++.+++||+|++|+++|+||++||
T Consensus        70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence            123455688999999999999999999999999999988999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.3e-13  Score=113.32  Aligned_cols=113  Identities=21%  Similarity=0.235  Sum_probs=92.0

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.+++..++||+|+++ +++|+|+..|+.+.......   +.       ..++.++|..    
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~-~~~Givt~~dl~~~~~~~~~---~~-------~~~~~~~~~~----   66 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDG-DLVGVVSRKDLLKASIGGAD---LQ-------KVPVGVIMTR----   66 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHcCCC---cc-------CCCHHHHhCC----
Confidence            378999999999999999999999999999887 99999999999987642210   00       1123333321    


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN---GNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~---~~liGvIT~~Dll~  400 (426)
                          ..++.++++++++.+++++|.+++++++||+|++   |+++|+||.+||++
T Consensus        67 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          67 ----MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ----CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                0267899999999999999999999999999987   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=2.3e-13  Score=110.97  Aligned_cols=110  Identities=26%  Similarity=0.358  Sum_probs=91.9

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++++.+++++.++++.|.+.+++.+||+|++ + +++|+++.+|+++.+...+.  .       ....++.+++.     
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~G~v~~~dl~~~~~~~~~--~-------~~~~~v~~~~~-----   67 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRES-DAYGIVTMRDILKKVVAEGR--D-------PDRVNVYEIMT-----   67 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCC-cEEEEEehHHHHHHHHhCCC--C-------CCccCHHHHhc-----
Confidence            7889999999999999999999999999987 7 99999999999986543211  0       00123444443     


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                           .++.++++++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus        68 -----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          68 -----KPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             -----CCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                 37899999999999999999999999999997 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=2.5e-13  Score=108.00  Aligned_cols=95  Identities=18%  Similarity=0.294  Sum_probs=85.1

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      .++++.+++++.++.+.|.+++++++||+|+++++++|++|..|+.+.+.                            +.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------~~   53 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------LV   53 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------------------eE
Confidence            56789999999999999999999999999953589999999999865321                            67


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++++++||+|++ | +++|+|+.+|+++
T Consensus        54 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~-~~~giit~~d~~~   97 (98)
T cd04618          54 SIHPERSLFDAALLLLKNKIHRLPVIDPSTG-TGLYILTSRRILK   97 (98)
T ss_pred             EeCCCCcHHHHHHHHHHCCCCEeeEEECCCC-CceEEeehhhhhc
Confidence            89999999999999999999999999987 7 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.50  E-value=2.9e-13  Score=110.51  Aligned_cols=110  Identities=23%  Similarity=0.318  Sum_probs=92.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++.+||+|+++ +++|+++.+|+.+.........          ..++.++        
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~~~~~----------~~~~~~~--------   63 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDRDG-GVVGIITLPDLLRALEADEAGE----------PSAVDEV--------   63 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCC-CEEEEEEHHHHHHHHhcccccc----------cccHHHh--------
Confidence            67889999999999999999999999999887 9999999999998764321100          0113333        


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN--GNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~--~~liGvIT~~Dll~  400 (426)
                        |..++.++.+++++.++++.|.+++.+++||+|++  |+++|+||.+|+++
T Consensus        64 --~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          64 --ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence              34488999999999999999999999999999987  79999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.50  E-value=3.1e-13  Score=109.97  Aligned_cols=109  Identities=22%  Similarity=0.373  Sum_probs=92.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++.++|+|+++ +++|+++.+|+.+.+..+..           +..++.+++.      
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~~-----------~~~~v~~~~~------   65 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENG-RLLGTVTDGDIRRALLKGLS-----------LDDPVSEVMN------   65 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCC-CEEEEEEcHHHHHHHhcCCC-----------cCCCHHHhhc------
Confidence            67889999999999999999999999999887 99999999999876543211           1122444443      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          .++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+||+.
T Consensus        66 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          66 ----RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             ----CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence                37889999999999999999999999999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.50  E-value=7.3e-14  Score=116.12  Aligned_cols=113  Identities=19%  Similarity=0.308  Sum_probs=93.0

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.+++++++||+|+++ +++|+++.+|+++.+..+..          +...++.++|..    
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~-~~~Gii~~~dl~~~~~~~~~----------~~~~~v~~im~~----   67 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESG-KILGMVTLGNLLSSLSSGKV----------QPSDPVSKALYK----   67 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHHhcc----------CCCCcHHHHhhc----
Confidence            378999999999999999999999999999887 99999999999976543211          112245555544    


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHH---------hCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLD---------SKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~---------~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                            ++.++.+++++.++.++|.         +.+.+++||+|++|+++|+||..||++++
T Consensus        68 ------~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          68 ------QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             ------cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence                  8999999999999999653         34688899999889999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.50  E-value=5.6e-13  Score=138.46  Aligned_cols=195  Identities=16%  Similarity=0.181  Sum_probs=137.9

Q ss_pred             cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhh-------
Q 014353          179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES-------  251 (426)
Q Consensus       179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~-------  251 (426)
                      .++.++|..    ++.++.+++++.+++..|.+++++.+||+| ++++++|+++..|+.+.+........+..       
T Consensus        68 ~~V~dim~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         68 PQVRDLEID----KPVTVSPDTSLKEAWNLMDENNVKTLPVVD-EEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CcHHHhcCC----CCcEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            579999987    889999999999999999999999999999 47999999999999987754321100000       


Q ss_pred             ----hcc----------ccccccc---------cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC-------
Q 014353          252 ----WGK----------KKLSEIG---------LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG-------  301 (426)
Q Consensus       252 ----~~~----------~~v~~~~---------~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~-------  301 (426)
                          +..          ....++.         ...+.+..++.+.....+   ...+.+.++++++|+.+..       
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~  219 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLE  219 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHH
Confidence                000          0000100         012344345555443333   3356888999998886531       


Q ss_pred             ----CeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCc-CCceeecCCCCHHHHHHHHHhCC
Q 014353          302 ----NKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLL-SGMVTCSRNHTIKELIHLLDSKK  376 (426)
Q Consensus       302 ----~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~tl~~~~~~m~~~~  376 (426)
                          ..+.++.|..|.......-                      ....++.++|. +++.++++++++.++.+.|.+++
T Consensus       220 la~~~~i~ii~t~~dt~~t~~~l----------------------~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~  277 (546)
T PRK14869        220 LAKENGVTVISTPYDTFTTARLI----------------------NQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSR  277 (546)
T ss_pred             HHHhCCCeEEEecccHHHHHHHh----------------------hcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcC
Confidence                1356666666665553211                      11224444555 58999999999999999999999


Q ss_pred             CcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          377 IHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       377 ~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                      .+++||+|++|+++|+||.+|+++...
T Consensus       278 ~~~~PVvd~~g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        278 YRSYPVVDEDGKVVGVISRYHLLSPVR  304 (546)
T ss_pred             CCceEEEcCCCCEEEEEEHHHhhcccc
Confidence            999999999999999999999998653

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6.5e-13  Score=109.43  Aligned_cols=116  Identities=19%  Similarity=0.293  Sum_probs=92.0

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc-c-ccCCcccCC
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE-I-GLPIMSANH  269 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~-~-~~~im~~~~  269 (426)
                      ++.++.+++++.+++..|.+++.+++||+|. +++++|+++..|++.++..+.....     ..++.+ + ....|.. +
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~   74 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNL-----DLTVGEALERRSQDFE-G   74 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccc-----cCCHHHHHhhcccCCC-C
Confidence            6778999999999999999999999999994 8999999999999987643321100     011111 0 0013433 3


Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      +.++.+++++.++++.|.+++.+.+||+|++| +++|+||.+|++.
T Consensus        75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~~~Givt~~di~~  119 (120)
T cd04641          75 VRTCSPDDCLRTIFDLIVKARVHRLVVVDENK-RVEGIISLSDILQ  119 (120)
T ss_pred             CeEEcCCCcHHHHHHHHHhcCccEEEEECCCC-CEEEEEEHHHhhc
Confidence            78999999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.7e-13  Score=107.53  Aligned_cols=110  Identities=25%  Similarity=0.324  Sum_probs=91.9

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+.+.+||+|+++ +++|+++.+|+.+.....+.+.   .       .++.+++       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~-~~~G~v~~~dl~~~~~~~~~~~---~-------~~i~~~~-------   64 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKK-RLVGIITRYDVLSYALESEELK---D-------AKVREVM-------   64 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCC-CEEEEEEHHHHHHhhhhhhhhc---C-------CcHHHhc-------
Confidence            67889999999999999999999999999877 9999999999987643332111   1       1233333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus        65 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          65 ---NSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             ---cCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence               337899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.48  E-value=6.6e-13  Score=107.16  Aligned_cols=105  Identities=22%  Similarity=0.290  Sum_probs=91.0

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.+.+.+.+||+|++| +++|+++..|+.....                ..++.+++.     
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~----------------~~~v~~~~~-----   60 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKN-KVVGIVTSKDVAGKDP----------------DTTIEKVMT-----   60 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCC-eEEEEecHHHHhcccc----------------cccHHHHhc-----
Confidence            478999999999999999999999999999887 9999999999975410                113444443     


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                           .++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        61 -----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          61 -----KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             -----CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence                 37889999999999999999999999999998899999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.3e-13  Score=108.14  Aligned_cols=112  Identities=14%  Similarity=0.218  Sum_probs=95.2

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      ++.++++++++.+|++.|.+++...+||+|++        ++++|+++..|+.+.+....                    
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--------g~~~G~vt~~dl~~~~~~~~--------------------   53 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH--------GKLAGVLTKTDVVRQMGRCG--------------------   53 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC--------CCEEEEEehHHHHHHHhhcC--------------------
Confidence            46789999999999999999999999999988        89999999999986543210                    


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                   ......++.++|..    ++.++.+++++.++++.|.+++.+.+||+| ++
T Consensus        54 -----------------------------~~~~~~~v~~~~~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~   99 (114)
T cd04619          54 -----------------------------GPGCTAPVENVMTR----AVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-EN   99 (114)
T ss_pred             -----------------------------CCcccCCHHHHhcC----CCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CC
Confidence                                         01123467788876    788999999999999999999999999999 47


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|+++..|+++
T Consensus       100 ~~~~Gvi~~~dl~~  113 (114)
T cd04619         100 ARPLGVLNARDALK  113 (114)
T ss_pred             CcEEEEEEhHhhcc
Confidence            89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=8.1e-13  Score=110.13  Aligned_cols=120  Identities=21%  Similarity=0.331  Sum_probs=92.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH---HHHHHHHHHHhhhcC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA---KNFLTAVRKYMEEHH  346 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~  346 (426)
                      +.++.+++++.++++.|.+.+++.+||+|+++ +++|++|.+|+..++.....+......+.   .....++.++     
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   76 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVVDDNG-KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA-----   76 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEECCCC-cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH-----
Confidence            67889999999999999999999999999887 99999999999876533211100000000   0011223333     


Q ss_pred             CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEc--CCCcEEEEEeHHHHHH
Q 014353          347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVD--FNGNLEGVITLRDIIS  400 (426)
Q Consensus       347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd--~~~~liGvIT~~Dll~  400 (426)
                           |..++.++.+++++.++++.|.+.+.+.+||++  ++|+++|+||.+||++
T Consensus        77 -----~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          77 -----MSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             -----hcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence                 444889999999999999999999999999985  4689999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.3e-12  Score=107.69  Aligned_cols=119  Identities=25%  Similarity=0.281  Sum_probs=93.6

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++.+++++.++++.|.+.+++++||+|+ | +++|+++.+|+.+.+........-..........++.+++.      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   74 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKFHHLLVVED-N-ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMT------   74 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-C-eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhc------
Confidence            788999999999999999999999999997 7 99999999999886542110000000000112334555543      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          .++.++.+++++.++++.|.+++...+||+|++|+++|++|+.|+++
T Consensus        75 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          75 ----RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             ----CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence                37899999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=9e-13  Score=109.17  Aligned_cols=121  Identities=31%  Similarity=0.488  Sum_probs=94.6

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCcccccccccc-HHHHHHHHHHHhhhcCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSIT-AKNFLTAVRKYMEEHHH  347 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  347 (426)
                      +.++.++.++.+++++|.+.++..+||+|++ | +++|+|+..|+..++.....+....... ......++.+++     
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   76 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTG-KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM-----   76 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCC-EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh-----
Confidence            7888999999999999999999999999987 7 9999999999998765432111100000 000112333333     


Q ss_pred             CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                           ..++.++++++++.++++.|.+.+.+.++|+|++|+++|+||..||+++
T Consensus        77 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          77 -----TRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             -----cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence                 3478999999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.47  E-value=6.5e-13  Score=107.93  Aligned_cols=109  Identities=18%  Similarity=0.300  Sum_probs=92.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++++++++.+|++.|.+++...+||+|++        ++++|+|+..|+.+. ...                     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~~-~~~---------------------   51 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEE--------NKVLGQVTLSDLLEI-GPN---------------------   51 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHhh-ccc---------------------
Confidence            56889999999999999999999999999987        899999999999752 100                     


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                    .+...++.++|..    ++.++.+++++.+++..|.+++.+++||+| ++
T Consensus        52 ------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~   96 (111)
T cd04603          52 ------------------------------DYETLKVCEVYIV----PVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KE   96 (111)
T ss_pred             ------------------------------cccccChhheeec----CCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CC
Confidence                                          0112356777765    778899999999999999999999999999 47


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|+++
T Consensus        97 ~~~~Giit~~di~~  110 (111)
T cd04603          97 GKLVGTIYERELLR  110 (111)
T ss_pred             CeEEEEEEhHHhhc
Confidence            99999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.46  E-value=1.8e-12  Score=104.81  Aligned_cols=107  Identities=27%  Similarity=0.424  Sum_probs=91.9

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.++++..+||+|++| +++|+++.+|+++....+.              .++.+++      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~--------------~~~~~~~------   61 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDG-RLVGIVTSWDISKAVARDK--------------KSVEDIM------   61 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCC-cEEEEEeHHHHHHHHhhCc--------------cCHHHhc------
Confidence            378899999999999999999999999999887 9999999999987654321              1133333      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..++.++.+++++.++++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus        62 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          62 ----TRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             ----CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                337889999999999999999999999999998899999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=9.2e-13  Score=107.51  Aligned_cols=113  Identities=29%  Similarity=0.422  Sum_probs=90.4

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH-HHHHHHHhhhcCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF-LTAVRKYMEEHHH  347 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~  347 (426)
                      +++++.+++++.++++.|.+.+++.+||+|+++ +++|+++.+|+.+........ .     ...+ ..++.++      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~-~-----~~~~~~~~v~~~------   68 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEG-KYVGTISLTDILWKLKGLENL-D-----LERLVDLKVIDV------   68 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCC-cEEEEEeHHHHHHHhhccCch-h-----HHHHhCCcHHHH------
Confidence            378999999999999999999999999999877 999999999999876432110 0     0000 1233433      


Q ss_pred             CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          |.+++.++.+++++.++++.|.+.+  .+||+|++|+++|+||..|+++
T Consensus        69 ----~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          69 ----MNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             ----hcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence                3447899999999999999998865  5999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.46  E-value=4.9e-13  Score=109.02  Aligned_cols=110  Identities=24%  Similarity=0.301  Sum_probs=89.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcC-CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKK-IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      +.++.+++++.++++.|.+++ ++.+||+|+++ +++|+++.+|++.......            ...++.+++..    
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~~------------~~~~v~~~~~~----   65 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEG-RYVGIISLADLRAIPTSQW------------AQTTVIQVMTP----   65 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEcCCC-cEEEEEEHHHHHHHHHhhc------------cccchhhhhcc----
Confidence            788999999999999997765 88999999887 9999999999988753210            01123333321    


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ...+.++.+++++.++++.|.+++.+++||+|++|+++|+||.+||++
T Consensus        66 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          66 ----AAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ----cccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                013568999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.46  E-value=1.5e-12  Score=104.51  Aligned_cols=103  Identities=20%  Similarity=0.292  Sum_probs=88.8

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.++.++.++++.|.+.+.+.+||+|++| +++|+++..|+.+....                 .+.++        
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g-~~~Giv~~~dl~~~~~~-----------------~~~~~--------   56 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVVDADG-QPLGFVTRREAARASGG-----------------CCGDH--------   56 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEECCCC-CEEEEEeHHHHHHhccc-----------------chhhh--------
Confidence            67889999999999999999999999999877 99999999999865210                 12222        


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                        |.+.+.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus        57 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          57 --AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             --cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              3336788999999999999999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=9.7e-13  Score=106.69  Aligned_cols=110  Identities=31%  Similarity=0.494  Sum_probs=91.6

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.++.++.++++.|.+.+++.+||+|+++ +++|+++.+|+++.+......  .       ...++.+++       
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~--~-------~~~~~~~~~-------   65 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGG-RLVGIFSERDIVRKVALRGAS--A-------LDTPVSEIM-------   65 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEECCCC-CEEEEEehHHHHHHHhhcCCC--c-------cccCHHHhc-------
Confidence            77889999999999999999999999999877 999999999999876432110  0       011234333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|.+.+.+++||+++ |+++|+||..||++
T Consensus        66 ---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          66 ---TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ---CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence               337899999999999999999999999999997 99999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.2e-12  Score=110.55  Aligned_cols=128  Identities=25%  Similarity=0.329  Sum_probs=93.5

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHH---HHHh--h
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAV---RKYM--E  343 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~--~  343 (426)
                      +++++.+++++.++++.|.+.+++.+||+|+++ +++|+++..|+++........ .+....+ .+....   ...+  .
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~-~~~Giv~~~dl~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~   78 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNG-KPVGVITYRDLAFAEFEDNER-GLPKKSI-KMKRKAGQKRYRYVKE   78 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCC-CEEEEEeHHHHHHHhhccccc-ccchhhh-hhhhhccccccccccc
Confidence            378899999999999999999999999999987 999999999999876432110 0000000 000000   0000  0


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      ...++.++|..++.++.+++++.++++.|.+++.+++||+++ |+++|+||++|+++
T Consensus        79 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            001233445558899999999999999999999999999996 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.4e-12  Score=107.20  Aligned_cols=112  Identities=23%  Similarity=0.342  Sum_probs=94.0

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-CCe
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-NHI  270 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~~~  270 (426)
                      ++.++.+++++.+++..|.+++..++||+| ++++++|+++..|+.+.......      ....++.+    +|.. .++
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-~~~~~~Givt~~dl~~~~~~~~~------~~~~~~~~----~~~~~~~~   70 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD-EDGDLVGVVSRKDLLKASIGGAD------LQKVPVGV----IMTRMPNI   70 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEEEEHHHHHHHHHcCCC------ccCCCHHH----HhCCCCCc
Confidence            678899999999999999989999999999 47899999999999887653211      11344555    6653 348


Q ss_pred             eEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHH
Q 014353          271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQF  315 (426)
Q Consensus       271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~  315 (426)
                      .++.+++++.+++++|.+++++.+||+|++   + +++|+||.+|+++
T Consensus        71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~-~l~Gvit~~~l~~  117 (118)
T cd04617          71 TTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGL-EVIGRITKTNITK  117 (118)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccc-eEEEEEEhhheec
Confidence            899999999999999999999999999987   5 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.45  E-value=5.6e-13  Score=129.64  Aligned_cols=116  Identities=19%  Similarity=0.310  Sum_probs=96.2

Q ss_pred             Cccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHh
Q 014353          264 IMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYM  342 (426)
Q Consensus       264 im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  342 (426)
                      +|.+ .+++++.+++++.++++.|.+++.+.+||+|++| +++|+||.+|+.+....+..   +.       ..++.++ 
T Consensus       207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g-~lvGivt~~Dl~~~~~~~~~---~~-------~~~v~~i-  274 (326)
T PRK10892        207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNM-KIEGIFTDGDLRRVFDMGID---LR-------QASIADV-  274 (326)
T ss_pred             HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCC-cEEEEEecHHHHHHHhcCCC---cc-------cCCHHHh-
Confidence            7875 2499999999999999999999988888899888 99999999999876543210   00       1124444 


Q ss_pred             hhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          343 EEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       343 ~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                               |.+++.++.+++++.++++.|.+++++++||+| +|+++|+||.+||+++
T Consensus       275 ---------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        275 ---------MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ---------cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                     445899999999999999999999999999998 5899999999999975

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=9.2e-13  Score=106.69  Aligned_cols=108  Identities=22%  Similarity=0.276  Sum_probs=91.7

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.++..+||+|+++ +++|+++..|+.+.+.....            ..++.+++.      
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~------------~~~v~~~~~------   63 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVVDGDG-HLVGLLTRDDLIRALAEGGP------------DAPVRGVMR------   63 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEECCCC-cEEEEeeHHHHHHHHHhcCC------------CCcHHHHhc------
Confidence            67889999999999999988999999999877 99999999999887543210            012444443      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          .++.++.+++++.++++.|.+++..++||+|++|+++|+||..|+.+
T Consensus        64 ----~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          64 ----RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ----CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                37889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.45  E-value=6.1e-13  Score=129.11  Aligned_cols=122  Identities=25%  Similarity=0.302  Sum_probs=101.5

Q ss_pred             cccccccccCCcccC-CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353          254 KKKLSEIGLPIMSAN-HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK  332 (426)
Q Consensus       254 ~~~v~~~~~~im~~~-~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~  332 (426)
                      ..++++    +|.++ +++++++++++.++.+.|...+...+||+|++| +++|+|+..|+.+.+..+..          
T Consensus       196 ~~~V~~----im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g-~~iG~vt~~dl~~~~~~~~~----------  260 (321)
T PRK11543        196 LNKVHH----LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQ-QVQGVFTDGDLRRWLVGGGA----------  260 (321)
T ss_pred             HhHHHH----HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEecHHHHHHHHhCCCC----------
Confidence            345666    78763 389999999999999999999999999999988 99999999999886543211          


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                       ...++.+++          .+++.++.+++++.++++.|.++++.++||+|++|+++|+||.+|++++
T Consensus       261 -~~~~v~~im----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        261 -LTTPVNEAM----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             -cCCcHHHhc----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence             112244444          4488999999999999999999999999999988999999999999974

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.45  E-value=1.5e-12  Score=104.85  Aligned_cols=105  Identities=27%  Similarity=0.442  Sum_probs=90.4

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.++.++.++++.|.+.++.++||+|+++ +++|+++..|+.......               .++.+++       
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~---------------~~v~~~~-------   60 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYKEA---------------KSLEDIM-------   60 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEEcCCC-cEEEEEEHHHHHHHhhcC---------------CcHhHhh-------
Confidence            77889999999999999999999999999877 999999999998764211               1233333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ...+.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus        61 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 ---LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             ---cCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence               337889999999999999999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.4e-12  Score=105.74  Aligned_cols=109  Identities=30%  Similarity=0.458  Sum_probs=92.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++..++++.++++.|.+.+++++||+|+++ +++|+++..|+++.+..+..           ...++.+++       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~~l~~~~~~~~~-----------~~~~v~~~~-------   63 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEENVGSVVVVDPDE-RPIGIVTERDIVRAVAAGID-----------LDTPVSEIM-------   63 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEeeHHHHHHHHhccCC-----------CccCHHHhc-------
Confidence            67889999999999999999999999999887 99999999999887644311           011233333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus        64 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 ---TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ---cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence               347889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.45  E-value=2.6e-12  Score=103.99  Aligned_cols=107  Identities=21%  Similarity=0.368  Sum_probs=90.8

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      +.++.+++++.++.+.|.+.+++.+||+|++ + +++|+++..|+.+...... .    .       .++..++      
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~-~~~G~v~~~~l~~~~~~~~-~----~-------~~~~~~~------   63 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYDGDLD-NIIGVVHVKDLLRALAEGE-E----D-------LDLRDLL------   63 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCc-eEEEEEEHHHHHHHHHcCC-C----c-------CCHHHHh------
Confidence            7889999999999999999999999999987 7 9999999999998864321 0    0       1122222      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                           .++.++.+++++.++++.|.+++.+++||+|++|+++|+||++|+++
T Consensus        64 -----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          64 -----RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             -----cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                 26789999999999999999999999999998899999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.45  E-value=1.2e-12  Score=128.74  Aligned_cols=118  Identities=18%  Similarity=0.316  Sum_probs=102.1

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      ++.. ++++|++.+++.+|.+.|.++|++++.++++++ ...||||++|+...+...+.          +...+++    
T Consensus       154 ~~~~-~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~-~~~GIvT~~dl~~~v~~~g~----------~~~~~V~----  217 (610)
T COG2905         154 VKTL-PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSG-PLLGIVTRKDLRSRVIADGR----------SKTQKVS----  217 (610)
T ss_pred             HhcC-CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCC-CccceeehHHHHHHHHhcCC----------Ccccchh----
Confidence            4554 489999999999999999999999999999988 99999999999998765432          2233444    


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                            .+|+.+++++..++.+.+|+-+|..++++|+||++ +|+++|+||.+||++.+-.
T Consensus       218 ------evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         218 ------EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             ------hhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence                  45566999999999999999999999999999998 6999999999999998754

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.4e-12  Score=107.59  Aligned_cols=120  Identities=28%  Similarity=0.383  Sum_probs=93.5

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.+.+++.+||+|++| +++|+++.+|+.+....... .......-.....++.+++      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~~------   73 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDG-KLVGLLTQRDLLRAALSSLS-DNGEESLTKERDVPVAEVM------   73 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCC-CEEEEEEHHHHHHHhccccc-cccccccccccCcCHHHhh------
Confidence            378899999999999999999999999999887 99999999999987543211 0000000000011233333      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        74 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          74 ----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             ----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence                347899999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.5e-12  Score=105.51  Aligned_cols=108  Identities=24%  Similarity=0.305  Sum_probs=90.7

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++++||+|++| +++|+++.+|+..+......           ...++.+++       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~~-----------~~~~v~~~~-------   63 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEE-KLKGVVTFTDILDLDLFESF-----------LEKKVFNIV-------   63 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEcCCC-CEEEEEehHHhHHHHhhccc-----------ccCcHHHHh-------
Confidence            78899999999999999999999999999887 99999999999876432100           012244443       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|.+++.+++||+|+ |+++|+||..|++.
T Consensus        64 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          64 ---SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             ---cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence               337889999999999999999999999999997 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.44  E-value=1.2e-12  Score=131.71  Aligned_cols=114  Identities=25%  Similarity=0.371  Sum_probs=98.6

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|..+ ++++.+++++.++++.|.+++++.+||+|+++ +++|+|+.+|+...-  .              ..++.++| 
T Consensus        94 iMi~~-pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~g-klvGIVT~rDL~~~~--~--------------~~~V~diM-  154 (479)
T PRK07807         94 LVFDT-PVTLSPDDTVGDALALLPKRAHGAVVVVDEEG-RPVGVVTEADCAGVD--R--------------FTQVRDVM-  154 (479)
T ss_pred             ccccC-CeEECCCCCHHHHHHHHHhcCCceEEEECCCC-eEEEEEeHHHHhcCc--c--------------CCCHHHhc-
Confidence            67664 99999999999999999999999999999887 999999999995330  0              01344444 


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                               ..++.++++++++.++++.|.+++++++||+|++|+++|+||.+||++.....
T Consensus       155 ---------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        155 ---------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             ---------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence                     44899999999999999999999999999999889999999999999987654

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.44  E-value=2.5e-12  Score=103.96  Aligned_cols=107  Identities=27%  Similarity=0.481  Sum_probs=91.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++..++++.++++.|.+.+++++||+|+ + +++|+++..|+++....+..            ..++.+++.      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~~l~~~~~~~~~------------~~~v~~~~~------   62 (110)
T cd04588           3 LITLNPNATLREAARLFNTHHIHGAPVVDD-G-KLVGIVTLSDIAHAIARGLE------------LAKVKDVMT------   62 (110)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCEEEEeeC-C-EEEEEEEHHHHHHHHhcccc------------ccCHHHHhc------
Confidence            788999999999999999999999999998 7 99999999999987543210            022333333      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          .++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        63 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          63 ----KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ----CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                37899999999999999999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.44  E-value=1.7e-12  Score=105.49  Aligned_cols=111  Identities=26%  Similarity=0.308  Sum_probs=92.8

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.+.+.+.+||+|+++ +++|+++..++.+.+.....+.          ..++.+++      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~~i~~~~~~~~~~~----------~~~v~~~~------   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDG-RLVGIFTDGDLRRALEKGLDIL----------TLPVADVM------   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCC-CEEEEechHHHHHHHhccCccc----------cCCHHHhh------
Confidence            477889999999999999988899999999887 9999999999998865332110          01244444      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..++.++.+++++.++++.|..++.+.+||+|++|+++|+||..||++
T Consensus        66 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          66 ----TRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ----ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence                337789999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=1.5e-12  Score=105.67  Aligned_cols=111  Identities=25%  Similarity=0.375  Sum_probs=90.7

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ + +++|+|+.+|++......+....         ..++.+++      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~~~---------~~~v~~i~------   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-N-KLVGIFTSKDIALRVVAQGLDPE---------STLVERVM------   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHHhcCCCcC---------cCCHHHhc------
Confidence            3788999999999999999999999999997 7 99999999999865432221100         01233333      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..++.++.+++++.++++.|.+++.+++||++++|+++|+||..|++.
T Consensus        65 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 ----TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             ----CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence                347889999999999999999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.43  E-value=3.1e-12  Score=105.15  Aligned_cols=119  Identities=26%  Similarity=0.412  Sum_probs=92.4

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.++..+||+|+ + +++|+++..|+.........  .   ....+.....     ....+.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~i~~~~l~~~~~~~~~--~---~~~~~~~~~~-----~~~~~~   70 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVVDR-G-KLVGIVTDRDLKLASPSKAT--T---LDIWELYYLL-----SKIKVS   70 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEecC-C-eEEEEEeHHHHHHhhhcccc--c---ccchhhhhhh-----cccCHH
Confidence            678999999999999999999999999998 7 99999999999987543210  0   0000000000     001222


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      .+|..++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus        71 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          71 DIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             HhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            344458899999999999999999999999999998899999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.2e-12  Score=106.48  Aligned_cols=111  Identities=32%  Similarity=0.390  Sum_probs=91.4

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++.+||+|+++ +++|+++..|+++.+.......        ....++.+++.      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~~~--------~~~~~v~~~~~------   67 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNG-NLVGFLSEQDCLKQLLESSYHC--------DGVATVRDIMT------   67 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCCCCccEECCCC-eEEEEeehHHHHHHhhhhhhcc--------CCCccHHHHhc------
Confidence            67889999999999999999999999999888 9999999999998654321100        00112444443      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          .++.++.+++++.++++.|.+++.+++||+|+ |+++|+||..||++
T Consensus        68 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          68 ----TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             ----cCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence                37889999999999999999999999999997 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.1e-12  Score=108.35  Aligned_cols=126  Identities=25%  Similarity=0.415  Sum_probs=94.6

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc---ccccHHHHHHHHHHHhhhcC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY---RSITAKNFLTAVRKYMEEHH  346 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~  346 (426)
                      +.++.+++++.++++.|.+.+++++||+|+++ +++|+++..|+.+.+.........   ......+ ........  ..
T Consensus         3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~-~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~   78 (132)
T cd04636           3 VITVKKDDTLRDVVEILLTGKISGVPVVDNEG-RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD-ESKIKKLL--GK   78 (132)
T ss_pred             CeEeCCCCcHHHHHHHHHHhCCCccceECCCC-CEEEEEeHHHHHHHHhccCCcccccccccccccc-hHHHHHHc--CC
Confidence            78899999999999999999999999999887 999999999999876543211100   0000000 00000000  01


Q ss_pred             CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      ++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||+.|+++
T Consensus        79 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            344455568899999999999999999999999999997 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.42  E-value=1.1e-12  Score=109.02  Aligned_cols=114  Identities=16%  Similarity=0.215  Sum_probs=95.4

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++++.+++++.+|++.|.++++..+||+|++        ++++|+++..|++..+....                   
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~--------~~~~Gii~~~dl~~~~~~~~-------------------   54 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES--------GKILGMVTLGNLLSSLSSGK-------------------   54 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHHHHHHhc-------------------
Confidence            467899999999999999999999999999998        89999999999987655321                   


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHh---------hcCC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLS---------KYKM  214 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~---------~~~~  214 (426)
                                                     .....++.++|..    ++.++.+++++.++.+++.         +.+.
T Consensus        55 -------------------------------~~~~~~v~~im~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~   99 (124)
T cd04608          55 -------------------------------VQPSDPVSKALYK----QFKRVNKNDTLGKLSRILETDAFLLVFFEQIS   99 (124)
T ss_pred             -------------------------------cCCCCcHHHHhhc----cceecCCCCCHHHHHhhcccCCceEEEecccc
Confidence                                           0123479999987    8889999999999999653         3367


Q ss_pred             cEeEEEeCCCCeEEEEEeHHHHHHHH
Q 014353          215 KSIPVVDLGEGTIDNIITQSSVIHML  240 (426)
Q Consensus       215 ~~ipVvd~~~~~l~Giis~~Dl~~~l  240 (426)
                      +++||++ ++|+++|+||..|++.++
T Consensus       100 ~~~~v~~-~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608         100 SAAIGKE-KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             ccccccc-cccceEEEEehhHhhhhC
Confidence            7888888 479999999999998763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=2e-12  Score=104.95  Aligned_cols=110  Identities=25%  Similarity=0.477  Sum_probs=92.4

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++.+++++.++++.|.+.+++.+||+|+++ +++|+++.+|+.+.........          ..++.+++       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~~~~~----------~~~v~~~~-------   64 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDG-RLVGIVSLDDIREILFDPSLYD----------LVVASDIM-------   64 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEECCCC-CEEEEEEHHHHHHHHhcccccc----------cEEHHHhc-------
Confidence            78899999999999999999999999999887 9999999999988754321100          01234443       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|...+.+++||+|. +|+++|+||..|++.
T Consensus        65 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          65 ---TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             ---cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence               347899999999999999999999999999997 799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=4.6e-12  Score=103.28  Aligned_cols=112  Identities=19%  Similarity=0.303  Sum_probs=94.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      ++.++.+++++.+|++.|.++++..+||+|++.       ++++|+++..|+++++.....                   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------~~~~G~v~~~dl~~~~~~~~~-------------------   55 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE-------SDAYGIVTMRDILKKVVAEGR-------------------   55 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC-------CcEEEEEehHHHHHHHHhCCC-------------------
Confidence            578999999999999999999999999999742       699999999999876553210                   


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                    .....++.++|..    ++.++.+++++.+++..|.+++.+.+||+| + 
T Consensus        56 ------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-   99 (114)
T cd04630          56 ------------------------------DPDRVNVYEIMTK----PLISVSPDMDIKYCARLMERTNIRRAPVVE-N-   99 (114)
T ss_pred             ------------------------------CCCccCHHHHhcC----CCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-
Confidence                                          0112457788865    788999999999999999999999999999 3 


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|+++..|+++
T Consensus       100 ~~~~Gvi~~~dl~~  113 (114)
T cd04630         100 NELIGIISLTDIFL  113 (114)
T ss_pred             CEEEEEEEHHHhhc
Confidence            89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.41  E-value=1.8e-12  Score=104.80  Aligned_cols=103  Identities=33%  Similarity=0.489  Sum_probs=86.1

Q ss_pred             eCCCCcHHHHHHHHHhcC-----CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCC
Q 014353          273 VYEDEPVLQAFKLMRRKK-----IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHH  347 (426)
Q Consensus       273 v~~~~~v~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  347 (426)
                      +.+++++.++++.|.+++     +..+||+|+++ +++|+++.+|+++.-  .              ..++.+++.    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~-~~~G~v~~~~l~~~~--~--------------~~~v~~~~~----   60 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEG-RLLGVVSLRDLLLAD--P--------------DTPVSDIMD----   60 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCC-CEEEEEEHHHHhcCC--C--------------cchHHHHhC----
Confidence            568899999999998877     47899999877 999999999997531  0              123444443    


Q ss_pred             CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                            .++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus        61 ------~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          61 ------TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             ------CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence                  3789999999999999999999999999999889999999999999763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=2e-12  Score=107.60  Aligned_cols=111  Identities=18%  Similarity=0.196  Sum_probs=86.7

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh-----hCCccccccccccHHHHHHHHHHHhhh
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL-----TAPEIYHDYRSITAKNFLTAVRKYMEE  344 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~  344 (426)
                      +.++..++++.++++.|.+.+++.+||+|++| +++|+++..|+.+..     ..+.  ..       ....++.++|..
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~--~~-------~~~~~v~~im~~   72 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDD-NFIGVITAVDLLGEEPIKRIQEGG--IS-------RSELTVADVMTP   72 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEHHHHhhChhhHHHHHcC--CC-------chheEHHHhcCc
Confidence            68899999999999999999999999999887 999999999998632     1110  00       011224444432


Q ss_pred             cCCCCCCCcCCcee--e----cCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHH
Q 014353          345 HHHEDSPLLSGMVT--C----SRNHTIKELIHLLDSKKIHRIYVVDFN-GNLEGVITLRDIIS  400 (426)
Q Consensus       345 ~~~~~~~~~~~~~~--v----~~~~tl~~~~~~m~~~~~~~l~Vvd~~-~~liGvIT~~Dll~  400 (426)
                                ++..  +    .+++++.++++.|.+++.+++||+|++ |+++|+||++||++
T Consensus        73 ----------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          73 ----------KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ----------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                      3322  2    368999999999999999999999986 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.41  E-value=3.7e-12  Score=103.14  Aligned_cols=108  Identities=29%  Similarity=0.400  Sum_probs=90.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++..+.++.++.+.|.+.+++.+||+|+ + +++|+++..|+.+.+...+...          ..++.+++       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~~~----------~~~i~~~~-------   63 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD-G-RLVGIVTDRDLRNRVVAEGLDP----------DTPVSEVM-------   63 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHhccCCCc----------cCCHHHHh-------
Confidence            788999999999999999999999999998 6 9999999999987644322110          11233443       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|.+++.+++||+++ |+++|+||..|+++
T Consensus        64 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          64 ---TAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             ---CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence               337889999999999999999999999999997 99999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PRK11573 hypothetical protein; Provisional

Probab=99.41  E-value=3.6e-12  Score=126.93  Aligned_cols=135  Identities=17%  Similarity=0.246  Sum_probs=112.8

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      +.+.++++    +|.| .++++++.++++.++++.+.+++++++||.+++-++++|++..+|++.....+..      .+
T Consensus       184 l~~~~v~e----iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~------~~  253 (413)
T PRK11573        184 LEKVTVDD----IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE------FT  253 (413)
T ss_pred             cCCCChhh----cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc------CC
Confidence            55677888    8987 5699999999999999999999999999998765699999999999976432211      01


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF  410 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~  410 (426)
                      .    ..+.++           .+++.+++++.++.++++.|.+++.|-+.|+|+.|...|+||+.||+..+++++...+
T Consensus       254 ~----~~l~~~-----------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~  318 (413)
T PRK11573        254 K----ENMLRA-----------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSM  318 (413)
T ss_pred             H----HHHHhh-----------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCccc
Confidence            1    112222           2378999999999999999999999999999999999999999999999999988765


Q ss_pred             c
Q 014353          411 G  411 (426)
Q Consensus       411 ~  411 (426)
                      +
T Consensus       319 d  319 (413)
T PRK11573        319 S  319 (413)
T ss_pred             C
Confidence            4

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.41  E-value=4.1e-12  Score=102.71  Aligned_cols=108  Identities=28%  Similarity=0.436  Sum_probs=90.9

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++.+||+|+ + +++|+++.+|+.+.......           ...++.+++       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~-~~~G~v~~~~l~~~~~~~~~-----------~~~~v~~~~-------   62 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-G-RPLGIVTERDILRLLASGPD-----------LQTPVGEVM-------   62 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEeeC-C-EEEEEEeHHHHHHHHhcCCC-----------CCcCHHHhc-------
Confidence            678999999999999999999999999987 6 99999999999987643210           011233333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        63 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 ---SSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             ---CCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence               347899999999999999999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.41  E-value=4.3e-12  Score=102.63  Aligned_cols=107  Identities=30%  Similarity=0.445  Sum_probs=90.3

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      ++.++..+.++.++.+.|.+.++.++||+|+ + +++|+++..|+.+......            ...++.+++      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~dl~~~~~~~~------------~~~~~~~~~------   62 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-G-RVVGIISRRDVEKALRHGL------------GHAPVKDYM------   62 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-C-EEEEEEEHHHHHHHHhccc------------ccCcHHHHh------
Confidence            3788999999999999999999999999998 7 9999999999987653210            011234443      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..++.++.+++++.+++++|.+++.+++||+| +|+++|+||+.|+++
T Consensus        63 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          63 ----STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ----cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                33789999999999999999999999999999 799999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=2.9e-12  Score=104.54  Aligned_cols=109  Identities=28%  Similarity=0.345  Sum_probs=86.9

Q ss_pred             eeEeCCCCcHHHHHHHHHhcC-CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKK-IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      +.++.++.++.++++.|.+.+ ...++|+|+ + +++|+++..|++++.......   .       ..++.+++      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~~---~-------~~~i~~~~------   64 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVVEK-G-RLLGIFTERDIVRLTAIGKDL---S-------DLPIGEVM------   64 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-C-cEEEEEeHHHHHHHHhcCCCc---c-------ccCHHHhc------
Confidence            678899999999999998888 667777774 6 999999999999865422100   0       01233333      


Q ss_pred             CCCCcCCceeecCC--CCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRN--HTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~--~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..++.++.++  +++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        65 ----~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          65 ----TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ----CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                3367888877  78999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.41  E-value=4.8e-12  Score=102.92  Aligned_cols=110  Identities=18%  Similarity=0.308  Sum_probs=93.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +.+++++++++.+|++.|.+++++.+||+|++        ++++|+++..|+...+....                    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~~~~~--------------------   54 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN--------GRLLGTVTDGDIRRALLKGL--------------------   54 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCC--------CCEEEEEEcHHHHHHHhcCC--------------------
Confidence            45789999999999999999999999999988        89999999999986544221                    


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                     ....++.++|..    ++.++.+++++.+++..|.+++.+.+||++ ++
T Consensus        55 -------------------------------~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~   98 (113)
T cd04607          55 -------------------------------SLDDPVSEVMNR----NPITAKVGSSREEILALMRERSIRHLPILD-EE   98 (113)
T ss_pred             -------------------------------CcCCCHHHhhcC----CCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CC
Confidence                                           012356777775    788899999999999999999999999999 47


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|++.
T Consensus        99 ~~~~Gvit~~di~~  112 (113)
T cd04607          99 GRVVGLATLDDLLS  112 (113)
T ss_pred             CCEEEEEEhHHhcc
Confidence            89999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.40  E-value=2.1e-12  Score=108.73  Aligned_cols=128  Identities=23%  Similarity=0.384  Sum_probs=94.2

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccc--cccccc--cHHHHHHHHHHHhhh
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY--HDYRSI--TAKNFLTAVRKYMEE  344 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~--~~~~~~--~~~~~~~~v~~~~~~  344 (426)
                      ++.++.+++++.++++.|.+.+++++||+|+++ +++|+|+.+|+......+...  ..+...  ....+.....  ...
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~-~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   79 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDG-RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFV--RSH   79 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCC-CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHH--Hhc
Confidence            378899999999999999999999999999877 999999999998765332100  000000  0000000000  001


Q ss_pred             cCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          345 HHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       345 ~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      ...+.++|..++.++.+++++.++++.|.+++.+++||+| +|+++|+||+.|+++
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            1133445556889999999999999999999999999999 899999999999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.40  E-value=7.7e-13  Score=133.65  Aligned_cols=175  Identities=15%  Similarity=0.253  Sum_probs=140.6

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhh-----cCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSK-----YKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF  249 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~-----~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~  249 (426)
                      .++..+++++|.+    .+.++.++.++.++++.|.+     ++...++|+| ++++++|+++.+|++..-         
T Consensus       127 ~~~e~tvg~iMt~----~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd-~~~~l~GvV~l~dLl~a~---------  192 (449)
T TIGR00400       127 SYSDDSAGRIMTI----EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN-ESKHLKGVLSIRDLILAK---------  192 (449)
T ss_pred             CCCcchHHHhCcC----ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC-CCCeEEEEEEHHHHhcCC---------
Confidence            4677899999987    88999999999999999975     4567789888 479999999999986421         


Q ss_pred             hhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353          250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI  329 (426)
Q Consensus       250 ~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~  329 (426)
                         ...++++    +|+++ ++++.+++++.++++.|.++++..+||+|++| +++|+||.+|++..+....        
T Consensus       193 ---~~~~v~~----im~~~-~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g-~lvGiIt~~Dil~~l~~~~--------  255 (449)
T TIGR00400       193 ---PEEILSS----IMRSS-VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG-RLVGIVTVDDIIDVIQSEA--------  255 (449)
T ss_pred             ---CCCcHHH----HhCCC-CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC-eEEEEEEHHHHHHHHHhhh--------
Confidence               1245777    78775 88999999999999999999999999999988 9999999999999875321        


Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                              .++++..          ...+..+++++..++..|.++++..++|.    .+.|++| ..++..+.
T Consensus       256 --------~ed~~~~----------~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~  306 (449)
T TIGR00400       256 --------TEDFYMI----------AAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYE  306 (449)
T ss_pred             --------HHHHHHh----------cCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHH
Confidence                    2334333          33445567889999999999999888775    5777777 66766654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=6.6e-12  Score=101.77  Aligned_cols=112  Identities=24%  Similarity=0.418  Sum_probs=94.4

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++++++++++.+|++.|.++++..+||+|++        ++++|+++..|++.++.....                  
T Consensus         1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~~~------------------   54 (113)
T cd04623           1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDG--------GRLVGIFSERDIVRKVALRGA------------------   54 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCC--------CCEEEEEehHHHHHHHhhcCC------------------
Confidence            367889999999999999999999999999987        899999999999876432110                  


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG  223 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~  223 (426)
                                                     .....++.++|..    ++.++.++.++.++++.|.+.+.+.+||++ +
T Consensus        55 -------------------------------~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~   98 (113)
T cd04623          55 -------------------------------SALDTPVSEIMTR----NVITVTPDDTVDEAMALMTERRFRHLPVVD-G   98 (113)
T ss_pred             -------------------------------CccccCHHHhcCC----CcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C
Confidence                                           0112357777765    788999999999999999999999999999 3


Q ss_pred             CCeEEEEEeHHHHHH
Q 014353          224 EGTIDNIITQSSVIH  238 (426)
Q Consensus       224 ~~~l~Giis~~Dl~~  238 (426)
                       ++++|+++..|+++
T Consensus        99 -~~~~Gvit~~di~~  112 (113)
T cd04623          99 -GKLVGIVSIGDVVK  112 (113)
T ss_pred             -CEEEEEEEHHHhhc
Confidence             89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.1e-12  Score=105.62  Aligned_cols=124  Identities=24%  Similarity=0.364  Sum_probs=91.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++++++++.+|++.|.++++..+||+|++        ++++|+++..|+............                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~~----------------   57 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK--------GKLIGNISASDLKGLLLSPDDLLL----------------   57 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC--------CcEEEEEEHHHhhhhhcCcchhhc----------------
Confidence            57899999999999999999999999999988        899999999999876432110000                


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                               ..  ..     .+.. +.    ..-....+.+..    ++..+.+++++.+++..|.+++.+++||+| ++
T Consensus        58 ---------~~--~~-----~~~~-~~----~~~~~~~~~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~  111 (126)
T cd04642          58 ---------YR--TI-----TFKE-LS----EKFTDSDGVKSR----PLITCTPSSTLKEVITKLVANKVHRVWVVD-EE  111 (126)
T ss_pred             ---------cc--ch-----hhhh-hh----hhcccccccccC----CCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CC
Confidence                     00  00     0000 00    000011123333    788999999999999999999999999999 46


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|+++
T Consensus       112 ~~~~Giit~~dil~  125 (126)
T cd04642         112 GKPIGVITLTDIIS  125 (126)
T ss_pred             CCEEEEEEHHHHhc
Confidence            89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.7e-12  Score=102.96  Aligned_cols=113  Identities=28%  Similarity=0.384  Sum_probs=94.9

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++++++++++.+|++.|.++++..+||+|++        ++++|+++..|+++.+......                 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~~~-----------------   55 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN--------GNLVGFLSEQDCLKQLLESSYH-----------------   55 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCC--------CeEEEEeehHHHHHHhhhhhhc-----------------
Confidence            367889999999999999999999999999988        8999999999998765432100                 


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG  223 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~  223 (426)
                                                     .....++.++|..    ++..+.+++++.+++..|.+++.+++||++ +
T Consensus        56 -------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~   99 (114)
T cd04629          56 -------------------------------CDGVATVRDIMTT----EVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D   99 (114)
T ss_pred             -------------------------------cCCCccHHHHhcc----CceEECCCCcHHHHHHHHHHhCCCccCEEE-C
Confidence                                           0112357777765    778899999999999999999999999999 3


Q ss_pred             CCeEEEEEeHHHHHH
Q 014353          224 EGTIDNIITQSSVIH  238 (426)
Q Consensus       224 ~~~l~Giis~~Dl~~  238 (426)
                       ++++|++|..|+++
T Consensus       100 -~~~~Gvit~~di~~  113 (114)
T cd04629         100 -GKLVGQISRRDVLR  113 (114)
T ss_pred             -CEEEEEEEHHHHhc
Confidence             89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=6.7e-12  Score=103.82  Aligned_cols=118  Identities=25%  Similarity=0.465  Sum_probs=90.7

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccCcch-hhhhccccccccccCCcccCC
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAGLEW-FESWGKKKLSEIGLPIMSANH  269 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~~~~-~~~~~~~~v~~~~~~im~~~~  269 (426)
                      ++.++.+++++.+++..|.+++++++||+|. + ++++|+++..|+++++..+..... ........+..  ..+|.. +
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~   77 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE-ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRD--LTIGTS-D   77 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC-CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhh--cccCcC-C
Confidence            6678899999999999999889999999994 5 899999999999987643211000 00000001110  014554 4


Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ  314 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~  314 (426)
                      +.++.+++++.++++.|.+++.+.+||+|+++ +++|+||.+|+.
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~vGiit~~di~  121 (123)
T cd04627          78 VISINGDQPLIDALHLMHNEGISSVAVVDNQG-NLIGNISVTDVR  121 (123)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCceEEEECCCC-cEEEEEeHHHhh
Confidence            89999999999999999999999999999887 999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.39  E-value=4.3e-12  Score=104.92  Aligned_cols=123  Identities=30%  Similarity=0.435  Sum_probs=97.7

Q ss_pred             CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhh
Q 014353           63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAV  142 (426)
Q Consensus        63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~  142 (426)
                      +++++++++++++.+|.+.|.++++..+||+|++        |+++|+|+..|++.++.......               
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~~~~~---------------   57 (124)
T cd04600           1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD--------RRLVGIVTQRDLLRHARPDGRRP---------------   57 (124)
T ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC--------CCEEEEEEHHHHHhhhcccccch---------------
Confidence            3678999999999999999999999999999987        89999999999986543211000               


Q ss_pred             hcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC
Q 014353          143 NGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL  222 (426)
Q Consensus       143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~  222 (426)
                                             +...+.  ......++.++|..    .+.++.+++++.+++..|.+++.+.+||+| 
T Consensus        58 -----------------------~~~~~~--~~~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-  107 (124)
T cd04600          58 -----------------------LRGRLR--GRDKPETVGDIMSP----PVVTVRPDTPIAELVPLLADGGHHHVPVVD-  107 (124)
T ss_pred             -----------------------hhhhhh--cccccccHHHhccC----CCeeeCCCCcHHHHHHHHHhcCCCceeEEc-
Confidence                                   000000  01223467788876    788999999999999999999999999999 


Q ss_pred             CCCeEEEEEeHHHHHH
Q 014353          223 GEGTIDNIITQSSVIH  238 (426)
Q Consensus       223 ~~~~l~Giis~~Dl~~  238 (426)
                      ++|+++|+++..|+++
T Consensus       108 ~~g~~~Gvit~~di~~  123 (124)
T cd04600         108 EDRRLVGIVTQTDLIA  123 (124)
T ss_pred             CCCCEEEEEEhHHhhc
Confidence            4799999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.39  E-value=2.9e-12  Score=124.60  Aligned_cols=122  Identities=11%  Similarity=0.120  Sum_probs=103.0

Q ss_pred             ccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCC
Q 014353           52 ESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSP  129 (426)
Q Consensus        52 ~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~  129 (426)
                      ..++++++  |.+  +++++++++|+.+|++.|.++++..+||+|++        |+++|+||..|+.+.+...      
T Consensus       200 ~~~~V~di--m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~--------g~lvGivt~~Dl~~~~~~~------  263 (326)
T PRK10892        200 LLLRVSDI--MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN--------MKIEGIFTDGDLRRVFDMG------  263 (326)
T ss_pred             ccCcHHHH--hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC--------CcEEEEEecHHHHHHHhcC------
Confidence            45667777  776  89999999999999999999998888888987        8999999999997532210      


Q ss_pred             CCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHH
Q 014353          130 RSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLL  209 (426)
Q Consensus       130 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l  209 (426)
                                                                  ..+...++.++|..    ++.++.+++++.+++..|
T Consensus       264 --------------------------------------------~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m  295 (326)
T PRK10892        264 --------------------------------------------IDLRQASIADVMTP----GGIRVRPGILAVDALNLM  295 (326)
T ss_pred             --------------------------------------------CCcccCCHHHhcCC----CCEEECCCCCHHHHHHHH
Confidence                                                        01223468899987    888999999999999999


Q ss_pred             hhcCCcEeEEEeCCCCeEEEEEeHHHHHHH
Q 014353          210 SKYKMKSIPVVDLGEGTIDNIITQSSVIHM  239 (426)
Q Consensus       210 ~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~  239 (426)
                      .+++++++||++  +++++|+||..|++++
T Consensus       296 ~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        296 QSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             HHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence            999999999998  5799999999999864

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.5e-12  Score=104.47  Aligned_cols=119  Identities=25%  Similarity=0.377  Sum_probs=92.0

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++++||+|++| +++|+++..|+++........... .........++.++        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------   72 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQKAG-ELIGIITRRDIIRAGSVRTSVEDQ-QRTQTKASPTVEKI--------   72 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEECCCC-cEEEEEEcHHHHhhccccccccch-hhhhhhccCcHHHH--------
Confidence            78899999999999999999999999999887 999999999998753111000000 00000011223333        


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                        |..++.++..++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus        73 --~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          73 --MSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             --hcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence              3447899999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.39  E-value=9.4e-12  Score=100.58  Aligned_cols=108  Identities=28%  Similarity=0.423  Sum_probs=90.8

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++.+||+|+ + +++|+++..|+.+....... .        .  ..+.+.        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~-~--------~--~~~~~~--------   61 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD-G-RLVGIVTLADIRRVPAEGRE-A--------T--VLVGDV--------   61 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcceEeeC-C-eEEEEEEHHHHHHHHhcCcc-c--------c--cCHHHh--------
Confidence            788999999999999999999999999998 7 99999999999886533210 0        0  112232        


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                        |..++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        62 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          62 --MTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             --ccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence              3448899999999999999999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.39  E-value=5.6e-12  Score=102.12  Aligned_cols=109  Identities=19%  Similarity=0.245  Sum_probs=90.0

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +++++++.++.++++.|.+.+...++|+|+ + +++|+++..|+......+...          ...++.+++       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~~~----------~~~~i~~~~-------   63 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRDG-D-PRLGIVTRTDLLDAVLLDGLP----------SSTPVGEIA-------   63 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEecC-C-eEEEEEEHHHHHHHHHcCCCC----------CCCCHHHHh-------
Confidence            678899999999999999999999999998 7 899999999998875432110          011233333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                         ..++..+++++++.++++.|.+++.+.+||+|+ |+++|+||..|++++
T Consensus        64 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~  111 (111)
T cd04589          64 ---TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             ---CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence               337889999999999999999999999999985 899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=6.2e-12  Score=102.05  Aligned_cols=110  Identities=31%  Similarity=0.497  Sum_probs=89.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+++++||+|+ | +++|+++..|++......+..  +.       ..++.+++       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~i~~~~l~~~~~~~~~~--~~-------~~~~~~~~-------   64 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVCEN-D-RLVGIVTDRDIVVRAVAEGRD--PD-------TTTVGDVM-------   64 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-C-EEEEEEEhHHHHHHHhhccCC--cc-------cCCHHHhc-------
Confidence            788999999999999999999999999998 7 999999999997332111100  00       00133333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ...+.++.+++++.++++.|...+.+++||+|++|+++|+||..|+++
T Consensus        65 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          65 ---TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             ---cCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence               347889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.39  E-value=5.3e-12  Score=102.94  Aligned_cols=105  Identities=28%  Similarity=0.419  Sum_probs=86.9

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH  346 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  346 (426)
                      +.++.+++++.++++.|.+.++..+||+|+   ++ +++|+++..|+..... .              ..++.+++.   
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~-~~~G~v~~~dl~~~~~-~--------------~~~v~~~~~---   64 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG-KLLGIVTSRDIDFLTD-S--------------ETPLSEVMT---   64 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC-EEEEEEEhHHhhhhhc-c--------------CCCHHHhcC---
Confidence            678899999999999999999999999997   66 9999999999875421 1              012344443   


Q ss_pred             CCCCCCcCCceeecC--CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          347 HEDSPLLSGMVTCSR--NHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       347 ~~~~~~~~~~~~v~~--~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                             ..+.++..  ++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        65 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          65 -------PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             -------CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence                   25566655  999999999999999999999998899999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=5.9e-12  Score=102.69  Aligned_cols=114  Identities=23%  Similarity=0.364  Sum_probs=92.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++++++++.+|++.|.++++..+||+|++        ++++|+++..|+..++......                  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~------------------   55 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE--------GKYVGTISLTDILWKLKGLENL------------------   55 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC--------CcEEEEEeHHHHHHHhhccCch------------------
Confidence            57899999999999999999999999999987        8999999999998765321100                  


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                 ........++.++|..    ++.++.+++++.+++..|.+.+  .+||+| ++
T Consensus        56 ---------------------------~~~~~~~~~v~~~~~~----~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~  101 (116)
T cd04643          56 ---------------------------DLERLVDLKVIDVMNT----DVPVIIDDADIEEILHLLIDQP--FLPVVD-DD  101 (116)
T ss_pred             ---------------------------hHHHHhCCcHHHHhcC----CCceecCCCCHHHHHHHHhcCC--ceeEEe-CC
Confidence                                       0000123467788876    7888999999999999998754  589999 47


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|+++
T Consensus       102 ~~~~Gvit~~dil~  115 (116)
T cd04643         102 GIFIGIITRREILK  115 (116)
T ss_pred             CeEEEEEEHHHhhc
Confidence            89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.38  E-value=6.5e-12  Score=100.50  Aligned_cols=101  Identities=35%  Similarity=0.461  Sum_probs=86.8

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++.+++++.++++.|.+.++..+||+|+ + +++|+++.+|+.+....                .++.+++       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~Giv~~~~l~~~~~~----------------~~~~~~~-------   57 (105)
T cd04599           3 PITIDPLDSVGRAARLMEKHRIGGLPVVED-G-KLVGIITSRDVRRAHPN----------------RLVADAM-------   57 (105)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEehHHhhccccc----------------CCHHHHc-------
Confidence            678899999999999999999999999984 6 99999999999874210                1233343       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII  399 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll  399 (426)
                         ..++.++++++++.++++.|.+++..++||+|+ |+++|+||..|++
T Consensus        58 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          58 ---TREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             ---cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence               337899999999999999999999999999997 9999999999997

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=5.8e-12  Score=103.65  Aligned_cols=117  Identities=26%  Similarity=0.353  Sum_probs=90.6

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH-HHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF-LTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  348 (426)
                      ++++.+++++.++++.|.+.+++++||+|+ | +++|+++..|+.+.+..... .+........+ ..++.         
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---------   70 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVIEG-G-KLVGIVTEKDIADALRSFRP-LVRDRHQERRIRNLPVS---------   70 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEEEC-C-EEEEEEchHHHHHhhhhhhh-cccchhhhhhhhccCHH---------
Confidence            778999999999999999999999999997 7 99999999999887542110 00000000000 01222         


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                       ++|..++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||..|+++
T Consensus        71 -~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          71 -DIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             -HHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence             334458899999999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.1e-11  Score=100.51  Aligned_cols=109  Identities=25%  Similarity=0.426  Sum_probs=88.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++.+++++.++++.|.+++.+.++|.++ + +++|+++.+|+.+.......  .+       ...++.+++.      
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~--~~-------~~~~v~~~~~------   65 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-G-ELVGLLTFREVLQAMAQHGA--GV-------LDTTVRAIMN------   65 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-C-EEEEEEEHHHHHHHHHhcCC--ch-------hcCCHHHHhC------
Confidence            788999999999999998888877777665 6 99999999999987542110  00       0123444443      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..+.++.+++++.+++++|.+++..++||+| +|+++|+||.+||++
T Consensus        66 ----~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          66 ----PEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             ----CCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence                3788999999999999999999999999998 599999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.37  E-value=4.7e-12  Score=102.16  Aligned_cols=105  Identities=33%  Similarity=0.513  Sum_probs=87.3

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++..++++.++++.|.+.++..+||+|++| +++|+++.+|+..... .              ..++.+++.      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~-~--------------~~~v~~~~~------   61 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVVDDDG-KLVGIVTNRDLRFETD-L--------------DKPVSEVMT------   61 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-EEEEEEEhhHeeeccc-C--------------CCCHHHhcc------
Confidence            78889999999999999999999999999887 9999999999864311 0              012344433      


Q ss_pred             CCCcCCceeecC-CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSR-NHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~-~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..+..+.. ++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        62 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          62 ----PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ----cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                24566666 999999999999999999999998899999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.37  E-value=6.8e-12  Score=101.16  Aligned_cols=108  Identities=33%  Similarity=0.460  Sum_probs=87.4

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++..++++.++.+.|.+.+++.+||+|+ + +++|+++..|+.+.+......          +..++.+++.      
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~----------~~~~~~~~~~------   64 (110)
T cd04609           3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-G-RVVGSIDESDLLDALIEGKAK----------FSLPVREVMG------   64 (110)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCceeeEeeC-C-eeEEEEeHHHHHHHHhccccc----------cCcCHHHHhc------
Confidence            788999999999999999999999999998 7 999999999999876432110          0112333433      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                          .++.++++++++.+++++|.+ . +.+||++++|+++|+||++||+++
T Consensus        65 ----~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          65 ----EPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             ----CCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence                377899999999999999988 3 357899888999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.37  E-value=1.2e-11  Score=126.03  Aligned_cols=177  Identities=24%  Similarity=0.359  Sum_probs=130.0

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      .++++|..    +++++.+++++.++++.|.+++++++||+| ++++++|+++..|+.....           ...++.+
T Consensus        88 ~~~dim~~----~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd-~~g~lvGiVt~~DL~~~~~-----------~~~~V~d  151 (486)
T PRK05567         88 RSESGVVT----DPVTVTPDTTLAEALALMARYGISGVPVVD-ENGKLVGIITNRDVRFETD-----------LSQPVSE  151 (486)
T ss_pred             hhhhcccC----CCeEeCCCCCHHHHHHHHHHhCCCEEEEEc-cCCEEEEEEEHHHhhhccc-----------CCCcHHH
Confidence            45666765    889999999999999999999999999999 5899999999999854211           1245666


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHH
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVR  339 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~  339 (426)
                          +|+..+++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++.........+              
T Consensus       152 ----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g-~lvGiIT~~DLl~~~~~p~a~~d--------------  212 (486)
T PRK05567        152 ----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-RLKGLITVKDIEKAEEFPNACKD--------------  212 (486)
T ss_pred             ----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEhHHhhhhhhCCCcccc--------------
Confidence                77633589999999999999999999999999999988 99999999999988643211000              


Q ss_pred             HHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHH
Q 014353          340 KYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGNLEGVITLRDIISR  401 (426)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~liGvIT~~Dll~~  401 (426)
                             ..+..+....+.+.+  .-.+.++.|.+.+++.+ |+|. +|+..|+++.-+.++.
T Consensus       213 -------~~g~l~V~aai~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        213 -------EQGRLRVGAAVGVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             -------cCCCEEEEeecccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence                   000000011222223  22788889999999955 6664 5777776665555544

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.37  E-value=4e-12  Score=128.47  Aligned_cols=125  Identities=26%  Similarity=0.391  Sum_probs=104.4

Q ss_pred             hhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHh-----cCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccc
Q 014353          251 SWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRR-----KKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHD  325 (426)
Q Consensus       251 ~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~-----~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~  325 (426)
                      .+...++++    +|+++ +++++++.++.++++.|.+     ++...++|+|+++ +++|+++.+|++...  ++    
T Consensus       127 ~~~e~tvg~----iMt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~-~l~GvV~l~dLl~a~--~~----  194 (449)
T TIGR00400       127 SYSDDSAGR----IMTIE-YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESK-HLKGVLSIRDLILAK--PE----  194 (449)
T ss_pred             CCCcchHHH----hCcCc-eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCC-eEEEEEEHHHHhcCC--CC----
Confidence            345667787    89875 9999999999999999975     4567889999887 999999999997531  11    


Q ss_pred             cccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          326 YRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       326 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                                .+++++|.          +++.++++++++.++++.|.+++...+||||++|+++|+||.+|+++.+..+
T Consensus       195 ----------~~v~~im~----------~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       195 ----------EILSSIMR----------SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             ----------CcHHHHhC----------CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence                      12454443          3788999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q 014353          406 PP  407 (426)
Q Consensus       406 ~~  407 (426)
                      ..
T Consensus       255 ~~  256 (449)
T TIGR00400       255 AT  256 (449)
T ss_pred             hH
Confidence            54

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.3e-11  Score=104.11  Aligned_cols=133  Identities=16%  Similarity=0.229  Sum_probs=96.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++++++++.+|++.|.++++..+||+|++        ++++|+++..|++.++........              .+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~~--------------~~   59 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN--------GKPVGVITYRDLAFAEFEDNERGL--------------PK   59 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC--------CCEEEEEeHHHHHHHhhccccccc--------------ch
Confidence            56789999999999999999999999999998        899999999999876542210000              00


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                      .. | ......    .    ...   .........++.++|..    ++..+.+++++.+++..|.+++.+++||++  +
T Consensus        60 ~~-~-~~~~~~----~----~~~---~~~~~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~  120 (135)
T cd04621          60 KS-I-KMKRKA----G----QKR---YRYVKEVPLVAEDIMTE----EIITVSPNDDVVDAAKLMLEANISGLPVVD--N  120 (135)
T ss_pred             hh-h-hhhhhc----c----ccc---ccccccccccHHHhcCC----CCeEECCCCCHHHHHHHHHHcCCCEEEEEe--C
Confidence            00 0 000000    0    000   00001224468889876    788999999999999999999999999999  3


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|+|+..|+++
T Consensus       121 ~~~~Gvit~~di~~  134 (135)
T cd04621         121 DNIVGVITKTDICR  134 (135)
T ss_pred             CEEEEEEEHHHHhh
Confidence            89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.37  E-value=8.1e-12  Score=121.27  Aligned_cols=121  Identities=21%  Similarity=0.330  Sum_probs=104.8

Q ss_pred             ccchhhhccccccCC--cEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccc
Q 014353          178 NTKVRDIAGSFRWAP--FLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKK  255 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~--~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~  255 (426)
                      ..+|+++|..    .  +.++.+++++.++.+.|.+.+...+||+| ++++++|+++..|+.+.+......       ..
T Consensus       196 ~~~V~~im~~----~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd-~~g~~iG~vt~~dl~~~~~~~~~~-------~~  263 (321)
T PRK11543        196 LNKVHHLMRR----DDAIPQVALTASVMDAMLELSRTGLGLVAVCD-AQQQVQGVFTDGDLRRWLVGGGAL-------TT  263 (321)
T ss_pred             HhHHHHHhcc----CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEecHHHHHHHHhCCCCc-------CC
Confidence            5689999987    5  88999999999999999988889999999 489999999999998766432111       24


Q ss_pred             cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353          256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL  316 (426)
Q Consensus       256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  316 (426)
                      ++.+    +|.++ +.++.+++++.++++.|.+++...+||+|+++ +++|+||..|++++
T Consensus       264 ~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGvIt~~di~~~  318 (321)
T PRK11543        264 PVNE----AMTRG-GTTLQAQSRAIDAKEILMKRKITAAPVVDENG-KLTGAINLQDFYQA  318 (321)
T ss_pred             cHHH----hcCCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHhc
Confidence            5666    78765 88999999999999999999999999999888 99999999999875

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.37  E-value=1.4e-11  Score=100.44  Aligned_cols=111  Identities=24%  Similarity=0.385  Sum_probs=92.9

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.+++++.++++.|.+.+.+.+||+| ++++++|+++..|+...+.......      ..++.+    +|..+ +.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~dl~~~~~~~~~~~------~~~~~~----~~~~~-~~   69 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVD-RDGGVVGIITLPDLLRALEADEAGE------PSAVDE----VATPP-LL   69 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc-CCCCEEEEEEHHHHHHHHhcccccc------cccHHH----hccCC-ce
Confidence            456788999999999999999999999999 4799999999999988765321111      223555    56654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCC--CCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++...+||+|++  | +++|+||.+|+++
T Consensus        70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~-~~~Gvit~~di~~  114 (115)
T cd04593          70 TVHPDEPLAHALDRMASRGLRQLPVVDRGNPG-QVLGLLTRENVLL  114 (115)
T ss_pred             EECCCCCHHHHHHHHHHcCCceeeEEeCCCCC-eEEEEEEhHHhhc
Confidence            99999999999999999999999999987  6 9999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.37  E-value=1e-11  Score=99.70  Aligned_cols=103  Identities=32%  Similarity=0.457  Sum_probs=88.4

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++..+.++.++++.|.+.+...+||+|+ + +++|+++..|++...  .              ..++.+++.      
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~-~~~g~v~~~~l~~~~--~--------------~~~~~~~~~------   59 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN-G-KVVGIVSARDLLGKD--P--------------DETVEEIMS------   59 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhccC--c--------------cccHHHhCC------
Confidence            788999999999999999888889999997 7 999999999997531  0              112444443      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..+.++.+++++.++++.|.+++.+++||+|++|+++|+|+..||++
T Consensus        60 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          60 ----KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ----CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                37889999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.36  E-value=6.6e-12  Score=131.14  Aligned_cols=126  Identities=14%  Similarity=0.176  Sum_probs=103.3

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      ..++++    +|+++ +.++++++++.++.+.|.+++.+.+||+|+++ +++|+|+.+|+.+.+.....          .
T Consensus       446 ~~~V~d----im~~~-~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g-~lvGiVt~~dL~~~l~~~~~----------~  509 (574)
T PRK01862        446 TTQMRE----LIQPA-QTVVPPTASVADMTRVFLEYPVKYLYVVDDDG-RFRGAVALKDITSDLLDKRD----------T  509 (574)
T ss_pred             hCcHHH----HhcCC-CceeCCCCCHHHHHHHHHhCCCceEEEEcCCC-eEEEEEEHHHHHHHhhcccc----------c
Confidence            445666    78765 88999999999999999999999999999988 99999999999886533210          0


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHHHHHhC
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN--GNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~--~~liGvIT~~Dll~~l~~~  405 (426)
                      ...++.+++          .+++.++++++++.+++++|.+++.+++||+|++  ++++|+||++|+++.+.+.
T Consensus       510 ~~~~v~dim----------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~  573 (574)
T PRK01862        510 TDKTAADYA----------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM  573 (574)
T ss_pred             ccchHHHhc----------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence            012344444          4478999999999999999999999999999876  4899999999999998653

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.1e-11  Score=100.40  Aligned_cols=109  Identities=21%  Similarity=0.333  Sum_probs=93.0

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +.+++++++++.+|++.|.+.+...+||+|.+        ++++|+++..|+.+.+....                    
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~--------------------   53 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD--------GHLVGLLTRDDLIRALAEGG--------------------   53 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC--------CcEEEEeeHHHHHHHHHhcC--------------------
Confidence            56789999999999999999999999999987        89999999999987644211                    


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                      ...++.++|..    ++..+.+++++.+++..|.+++.+.+||++ ++
T Consensus        54 --------------------------------~~~~v~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~   96 (111)
T cd04639          54 --------------------------------PDAPVRGVMRR----DFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GS   96 (111)
T ss_pred             --------------------------------CCCcHHHHhcC----CCcEECCCCcHHHHHHHHHhcCCceeeEEc-CC
Confidence                                            11246677765    788999999999999999999999999998 36


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|+.+
T Consensus        97 ~~~~G~it~~dl~~  110 (111)
T cd04639          97 GRLVGLVTLENVGE  110 (111)
T ss_pred             CCEEEEEEHHHhhc
Confidence            89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.36  E-value=1.2e-11  Score=100.43  Aligned_cols=113  Identities=27%  Similarity=0.430  Sum_probs=95.1

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      |++.++++++++.+|++.|.++++..+||+|++        ++++|+++..|+..++....                   
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~G~v~~~~l~~~~~~~~-------------------   53 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD--------GRLVGIVSLDDIREILFDPS-------------------   53 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC--------CCEEEEEEHHHHHHHHhccc-------------------
Confidence            467899999999999999999999999999987        89999999999986543210                   


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG  223 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~  223 (426)
                                                     .....++.++|..    ++.++.+++++.+++..|.+.+.+++||++.+
T Consensus        54 -------------------------------~~~~~~v~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~   98 (114)
T cd04613          54 -------------------------------LYDLVVASDIMTK----PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD   98 (114)
T ss_pred             -------------------------------ccccEEHHHhccC----CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC
Confidence                                           0112467788876    78899999999999999999999999999821


Q ss_pred             CCeEEEEEeHHHHHH
Q 014353          224 EGTIDNIITQSSVIH  238 (426)
Q Consensus       224 ~~~l~Giis~~Dl~~  238 (426)
                      .++++|+++..|++.
T Consensus        99 ~~~~~Gvvt~~di~~  113 (114)
T cd04613          99 PGKLLGILSRSDLLS  113 (114)
T ss_pred             CCEEEEEEEhHHhhc
Confidence            589999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.36  E-value=7.5e-12  Score=105.37  Aligned_cols=127  Identities=24%  Similarity=0.428  Sum_probs=97.5

Q ss_pred             CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhh
Q 014353           63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAV  142 (426)
Q Consensus        63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~  142 (426)
                      +++++++++++++.+|++.|.++++..+||+|++        ++++|+++..|+.......... ..             
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~--------~~~~Gvi~~~dl~~~~~~~~~~-~~-------------   58 (135)
T cd04586           1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDD--------GRLVGIVSEGDLLRRAELGTER-RR-------------   58 (135)
T ss_pred             CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC--------CCEEEEeeHHHHHHHhcccCcc-hh-------------
Confidence            3578899999999999999999999999999987        8999999999998654321100 00             


Q ss_pred             hcCccccccccCCCCcccccccchhhcccccc-------cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCc
Q 014353          143 NGMSKAALFKDLGPESASMTSGNFFEALTTSE-------FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMK  215 (426)
Q Consensus       143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~  215 (426)
                                           ..|...+....       .....++.++|..    ++..+.+++++.+++..|.+++.+
T Consensus        59 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~  113 (135)
T cd04586          59 ---------------------ARWLDLLAGAEELAAAFVRSHGRKVADVMTR----PVVTVGEDTPLAEVAELMEEHRIK  113 (135)
T ss_pred             ---------------------hhHHHHhcchHHHHHHHHHhcCCCHHHHhCC----CceEeCCCCcHHHHHHHHHHcCCC
Confidence                                 00000000000       1123468888876    788999999999999999999999


Q ss_pred             EeEEEeCCCCeEEEEEeHHHHHH
Q 014353          216 SIPVVDLGEGTIDNIITQSSVIH  238 (426)
Q Consensus       216 ~ipVvd~~~~~l~Giis~~Dl~~  238 (426)
                      .+||+|  +|+++|++|..|+++
T Consensus       114 ~l~Vvd--~g~~~Gvit~~di~~  134 (135)
T cd04586         114 RVPVVR--GGRLVGIVSRADLLR  134 (135)
T ss_pred             ccCEec--CCEEEEEEEhHhhhc
Confidence            999999  689999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.36  E-value=1.6e-11  Score=98.45  Aligned_cols=100  Identities=27%  Similarity=0.435  Sum_probs=85.8

Q ss_pred             eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCC
Q 014353          271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDS  350 (426)
Q Consensus       271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  350 (426)
                      +++.+++++.++++.|.+.+++.+||+|+ + +++|+++..|+.+...                 .++.+++        
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~-----------------~~~~~~~--------   56 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-N-KFLGAVYLKDIENATY-----------------GDVVDYI--------   56 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-C-EEEEEEEHHHHhhhcc-----------------cchhhhh--------
Confidence            56789999999999999999999999998 7 9999999999976411                 0123233        


Q ss_pred             CCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          351 PLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       351 ~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                        ...+.++.+++++.++++.|.+++...+||+| +|+++|+||..|+++
T Consensus        57 --~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          57 --VRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             --hcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence              33688999999999999999999999999998 699999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.1e-11  Score=103.15  Aligned_cols=126  Identities=23%  Similarity=0.337  Sum_probs=96.6

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++.+.+++++.+|+++|.++++..+||+|++        ++++|+++..|+...+..........             
T Consensus         1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------~~~~G~it~~dl~~~~~~~~~~~~~~-------------   59 (128)
T cd04632           1 EDVITVREDDSVGKAINVLREHGISRLPVVDDN--------GKLTGIVTRHDIVDFVVRDRDKARTG-------------   59 (128)
T ss_pred             CCceEeCCCCCHHHHHHHHHHcCCCEEEEECCC--------CcEEEEEEHHHHHHHHhhhhhhcchh-------------
Confidence            357889999999999999999999999999998        89999999999987644321100000             


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC-
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL-  222 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~-  222 (426)
                      +         .   +            .........++.++|..    +++++.++.++.+++..|.+.+.+.+||++. 
T Consensus        60 ~---------~---~------------~~~~~~~~~~~~~~~~~----~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~  111 (128)
T cd04632          60 D---------R---S------------GEKERMLDLPVYDAMSS----PVITASPNDSVRDAVDRMLENDDSSVVVVTPD  111 (128)
T ss_pred             h---------h---h------------hhhhhhccCcHHHHhcC----CCceECCCCcHHHHHHHHHhCCCCeEeEeccC
Confidence            0         0   0            00011223467788876    8889999999999999999999999999852 


Q ss_pred             CCCeEEEEEeHHHHHH
Q 014353          223 GEGTIDNIITQSSVIH  238 (426)
Q Consensus       223 ~~~~l~Giis~~Dl~~  238 (426)
                      ++++++|+||..|+++
T Consensus       112 ~~~~~~Gvit~~di~~  127 (128)
T cd04632         112 DDTKVVGILTKKDVLR  127 (128)
T ss_pred             CCCcEEEEEEhHhhhc
Confidence            4689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.35  E-value=2.3e-11  Score=98.22  Aligned_cols=107  Identities=27%  Similarity=0.473  Sum_probs=92.0

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.+++++.++++.|.+++...+||+| ++++++|+++..++++.+....          .++.+    +|... +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~~l~~~~~~~~----------~~~~~----~~~~~-~~   66 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVD-EDGRLVGIVTSWDISKAVARDK----------KSVED----IMTRN-VI   66 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEEC-CCCcEEEEEeHHHHHHHHhhCc----------cCHHH----hcCCC-Ce
Confidence            667889999999999999999999999999 4799999999999987664321          23555    56554 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++.+.+||++++| +++|+|+..|+.+
T Consensus        67 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~v~~~di~~  109 (110)
T cd04605          67 TATPDEPIDVAARKMERHNISALPVVDAEN-RVIGIITSEDISK  109 (110)
T ss_pred             EECCCCcHHHHHHHHHHhCCCEEeEECCCC-cEEEEEEHHHhhh
Confidence            999999999999999999999999999887 9999999999964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=2.2e-11  Score=103.73  Aligned_cols=126  Identities=29%  Similarity=0.381  Sum_probs=95.0

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc--------------ccccHHHHH
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY--------------RSITAKNFL  335 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~--------------~~~~~~~~~  335 (426)
                      ++++.+++++.++++.|.+.+++.+||+|+ + +++|+++.+|+.+.+.....+...              ....+.+..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           3 PITCNADDTISDAARLLRENKISGAPVLDG-G-KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHcCCCcceEeEC-C-eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            788999999999999999999999999998 7 999999999999876432211100              001111222


Q ss_pred             HHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          336 TAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       336 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      ....+..  ..++..+|..++.++.+++++.++++.|.+++.+++||+++ |+++|+||..|++.
T Consensus        81 ~~~~~~~--~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAG--KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHh--cCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            2111110  11334455668999999999999999999999999999997 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.6e-11  Score=101.08  Aligned_cols=120  Identities=24%  Similarity=0.378  Sum_probs=96.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++.+++++.+|++.|.+.++..+||+|++        |+++|+++..|+...+........              .+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~~~~~--------------~~   59 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED--------GKLVGLLTQRDLLRAALSSLSDNG--------------EE   59 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC--------CCEEEEEEHHHHHHHhcccccccc--------------cc
Confidence            57889999999999999999999999999987        899999999999876543211000              00


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                           .      .......++.+++..    ++..+.+++++.++++.|.+++.+.+||++. +
T Consensus        60 ---------------------~------~~~~~~~~v~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~  107 (122)
T cd04803          60 ---------------------S------LTKERDVPVAEVMKT----DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-K  107 (122)
T ss_pred             ---------------------c------cccccCcCHHHhhCC----CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-C
Confidence                                 0      011234467788876    7889999999999999999999999999993 6


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|++.
T Consensus       108 ~~~~Gvit~~dl~~  121 (122)
T cd04803         108 GTLVGIITRSDFLR  121 (122)
T ss_pred             CCEEEEEEHHHhhc
Confidence            89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.35  E-value=1.8e-11  Score=124.70  Aligned_cols=171  Identities=18%  Similarity=0.279  Sum_probs=126.9

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      |.++++++++++++.+|+++|.++++..+||+|++        ++++|+|+..|+...    .+                
T Consensus        93 m~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~--------g~lvGiVt~~DL~~~----~~----------------  144 (486)
T PRK05567         93 VVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN--------GKLVGIITNRDVRFE----TD----------------  144 (486)
T ss_pred             ccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC--------CEEEEEEEHHHhhhc----cc----------------
Confidence            67899999999999999999999999999999987        899999999999521    00                


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhcc-ccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEE
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAG-SFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVV  220 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~-~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVv  220 (426)
                                                         ...++.++|. .    +++++.+++++.+++..|.+++++.+||+
T Consensus       145 -----------------------------------~~~~V~dim~~~----~~v~v~~~~sl~eal~~m~~~~~~~lpVV  185 (486)
T PRK05567        145 -----------------------------------LSQPVSEVMTKE----RLVTVPEGTTLEEALELLHEHRIEKLPVV  185 (486)
T ss_pred             -----------------------------------CCCcHHHHcCCC----CCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence                                               1235778886 4    78899999999999999999999999999


Q ss_pred             eCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC-
Q 014353          221 DLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK-  299 (426)
Q Consensus       221 d~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~-  299 (426)
                      | ++++++|++|..|+++.+.......  .......+..    .|      ...+  .-.+..+.|.+.++.. +++|. 
T Consensus       186 D-e~g~lvGiIT~~DLl~~~~~p~a~~--d~~g~l~V~a----ai------~~~~--~~~e~a~~L~~agvdv-ivvD~a  249 (486)
T PRK05567        186 D-DNGRLKGLITVKDIEKAEEFPNACK--DEQGRLRVGA----AV------GVGA--DNEERAEALVEAGVDV-LVVDTA  249 (486)
T ss_pred             c-CCCcEEEEEEhHHhhhhhhCCCccc--ccCCCEEEEe----ec------ccCc--chHHHHHHHHHhCCCE-EEEECC
Confidence            9 4899999999999998863210000  0000111111    22      2223  2278888888999984 46665 


Q ss_pred             CCCeEEEEEeHHHHHHH
Q 014353          300 GGNKAVGNISLRDIQFL  316 (426)
Q Consensus       300 ~~~~lvGiIs~~Dl~~~  316 (426)
                      ++ +..++++.-+.++.
T Consensus       250 ~g-~~~~vl~~i~~i~~  265 (486)
T PRK05567        250 HG-HSEGVLDRVREIKA  265 (486)
T ss_pred             CC-cchhHHHHHHHHHh
Confidence            45 77777766555554

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.7e-11  Score=102.81  Aligned_cols=130  Identities=25%  Similarity=0.378  Sum_probs=96.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++++++++.+|++.|.++++..+||+|++        ++++|+++..|++.++.........             .+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~i~~~~l~~~~~~~~~~~~~-------------~~   60 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE--------GRVVGIVSEGDLIRKIYKGKGLFYV-------------TL   60 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC--------CCEEEEEeHHHHHHHHhccCCcccc-------------cc
Confidence            56889999999999999999999999999987        8999999999998765432110000             00


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                      .     .......      +.      ........++.++|..    ++..+.+++++.+++..|.+.+.+.+||++ + 
T Consensus        61 ~-----~~~~~~~------~~------~~~~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-  117 (132)
T cd04636          61 L-----YSVIFLD------ES------KIKKLLGKKVEEIMTK----KVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-  117 (132)
T ss_pred             c-----ccccccc------hH------HHHHHcCCCHHHhccC----CceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-
Confidence            0     0000000      00      0111222367788875    788899999999999999999999999999 4 


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|+++
T Consensus       118 ~~~iGvit~~dl~~  131 (132)
T cd04636         118 GKLVGIISRGDIIR  131 (132)
T ss_pred             CEEEEEEEHHHhhc
Confidence            99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.35  E-value=3.4e-11  Score=121.38  Aligned_cols=180  Identities=18%  Similarity=0.208  Sum_probs=130.6

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      .....++.++|..    +++++.+++++.+++..|.+++++.+||+| ++++++|+|+..|+... .           ..
T Consensus        85 ~l~~VKv~~iMi~----~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD-~~gklvGIVT~rDL~~~-~-----------~~  147 (479)
T PRK07807         85 VVAWVKSRDLVFD----TPVTLSPDDTVGDALALLPKRAHGAVVVVD-EEGRPVGVVTEADCAGV-D-----------RF  147 (479)
T ss_pred             HHhhccccccccc----CCeEECCCCCHHHHHHHHHhcCCceEEEEC-CCCeEEEEEeHHHHhcC-c-----------cC
Confidence            3445567788876    888999999999999999999999999999 48899999999997321 0           02


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      .++.+    +|+.+ ++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++....+..+..-.       
T Consensus       148 ~~V~d----iMt~~-~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g-~lvGIIT~~DIl~~~~~~~~~~~~g-------  214 (479)
T PRK07807        148 TQVRD----VMSTD-LVTLPAGTDPREAFDLLEAARVKLAPVVDADG-RLVGVLTRTGALRATIYTPAVDAAG-------  214 (479)
T ss_pred             CCHHH----hccCC-ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhCCchhhhhh-------
Confidence            45677    78864 99999999999999999999999999999888 9999999999999865442111000       


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHHhC
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~liGvIT~~Dll~~l~~~  405 (426)
                      ...+.               ..  +.......+.++.|.+.+++.+ ++|. +|+   -...-+.++.+..+
T Consensus       215 ~l~V~---------------aa--v~~~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~~~~~~i~~ik~~  265 (479)
T PRK07807        215 RLRVA---------------AA--VGINGDVAAKARALLEAGVDVL-VVDTAHGH---QEKMLEALRAVRAL  265 (479)
T ss_pred             ccchH---------------hh--hccChhHHHHHHHHHHhCCCEE-EEeccCCc---cHHHHHHHHHHHHH
Confidence            00011               11  2223346677778888888774 5564 333   33444555555544

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.35  E-value=4.7e-12  Score=117.61  Aligned_cols=117  Identities=23%  Similarity=0.359  Sum_probs=102.7

Q ss_pred             cccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          256 KLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       256 ~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      .+.+    +|.| ++..+...++++.+..++..+.+.+++||+|... +++|+++.+|+......               
T Consensus       189 ~Ved----i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~-kvvGvVt~rDv~~~~~~---------------  248 (432)
T COG4109         189 TVED----IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSM-KVVGVVTMRDVLDKKPS---------------  248 (432)
T ss_pred             eHHH----hccccccceeccccccHHHHHHHHHHcCCCccceecccc-eEEEEEEehhhhcCCCC---------------
Confidence            4555    7775 4578999999999999999999999999999988 99999999999877321               


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                       .++.+          +|+++|.++.+.+|+..+.++|...++.-+||+|++++++|+||++|+++.+.
T Consensus       249 -t~ieK----------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         249 -TTIEK----------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             -ccHHH----------HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence             23444          45559999999999999999999999999999999999999999999999985

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.35  E-value=2.2e-11  Score=122.32  Aligned_cols=135  Identities=22%  Similarity=0.351  Sum_probs=114.7

Q ss_pred             hhccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353          251 SWGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI  329 (426)
Q Consensus       251 ~~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~  329 (426)
                      .+.+.++++    +|+| .++.+++.+.++.++.+.+.+++++++||++++.+.++|++..+|++....++.. ..    
T Consensus       202 ~l~~~~v~e----iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~----  272 (429)
T COG1253         202 DLDDRTVRE----IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL----  272 (429)
T ss_pred             ccCCcEeee----EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc----
Confidence            355788888    8988 5699999999999999999999999999999655699999999999999765531 00    


Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCc
Q 014353          330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGY  409 (426)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~  409 (426)
                         ....               .-+++..++++.++.++++.|.+.+.|-..|+|+.|.+.|+||+.||+..+++++...
T Consensus       273 ---~~~~---------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de  334 (429)
T COG1253         273 ---DLRV---------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDE  334 (429)
T ss_pred             ---chhh---------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCc
Confidence               0000               0118899999999999999999999999999999999999999999999999999876


Q ss_pred             ccc
Q 014353          410 FGD  412 (426)
Q Consensus       410 ~~~  412 (426)
                      .+.
T Consensus       335 ~d~  337 (429)
T COG1253         335 HDE  337 (429)
T ss_pred             ccc
Confidence            653

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.3e-11  Score=98.77  Aligned_cols=111  Identities=21%  Similarity=0.300  Sum_probs=92.8

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.+++++.++++.|.+.+...+||+|. +++++|+++..|+.+.+.....      +...++.+    +|..+ +.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~~~-~~   69 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEE------LKDAKVRE----VMNSP-VI   69 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhh------hcCCcHHH----hccCC-ce
Confidence            3567889999999999999999999999994 7899999999999876543211      11345666    67654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++..++++.++++.|.+++...+||+|++| +++|+++..|+++
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvvt~~dl~~  112 (113)
T cd04615          70 TIDANDSIAKARWLMSNNNISRLPVLDDKG-KVGGIVTEDDILR  112 (113)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeeeEECCCC-eEEEEEEHHHhhc
Confidence            999999999999999999999999999887 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.34  E-value=5.2e-12  Score=124.31  Aligned_cols=118  Identities=18%  Similarity=0.405  Sum_probs=106.2

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      ++.+.+++++.+|+.+|.+.|.++++.++.|+|.+        +...||||.+|+...++..                  
T Consensus       155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~--------~~~~GIvT~~dl~~~v~~~------------------  208 (610)
T COG2905         155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS--------GPLLGIVTRKDLRSRVIAD------------------  208 (610)
T ss_pred             hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC--------CCccceeehHHHHHHHHhc------------------
Confidence            47899999999999999999999999999999988        8999999999999887642                  


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD  221 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd  221 (426)
                        |.                              -...+|+++|+.    |++++..++.+.+|.-+|.+++++++||++
T Consensus       209 --g~------------------------------~~~~~V~evmT~----p~~svd~~~~~feAml~m~r~~I~hl~V~e  252 (610)
T COG2905         209 --GR------------------------------SKTQKVSEVMTS----PVISVDRGDFLFEAMLMMLRNRIKHLPVTE  252 (610)
T ss_pred             --CC------------------------------Ccccchhhhhcc----CceeecCcchHHHHHHHHHHhCCceeeeec
Confidence              11                              124579999998    999999999999999999999999999998


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhc
Q 014353          222 LGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       222 ~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                        +|+++|++|.+|+++....+
T Consensus       253 --~gq~~Gilt~~dIl~l~s~~  272 (610)
T COG2905         253 --DGQPLGILTLTDILRLFSQN  272 (610)
T ss_pred             --CCeeeEEeeHHHHHHhhCCC
Confidence              79999999999999988654

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.33  E-value=1.5e-11  Score=123.80  Aligned_cols=113  Identities=19%  Similarity=0.305  Sum_probs=96.1

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|..+ ++++.+++++.++++.|.+++++.+||+|+ + +++|+||.+|+...-  .              ..++.++| 
T Consensus        93 im~~~-pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-g-klvGIVT~rDL~~~~--~--------------~~~V~dIM-  152 (475)
T TIGR01303        93 LVLDT-PITLAPHDTVSDAMALIHKRAHGAAVVILE-D-RPVGLVTDSDLLGVD--R--------------FTQVRDIM-  152 (475)
T ss_pred             ccccC-CeEECCCCCHHHHHHHHHhcCCeEEEEEEC-C-EEEEEEEHHHhhcCC--C--------------CCCHHHHc-
Confidence            55554 899999999999999999999999999885 6 899999999984320  0              01344444 


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                               ..+++++++++++.++++.|.+++++++||+|++|+++|+||.+||++.....
T Consensus       153 ---------t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       153 ---------STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             ---------cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence                     44899999999999999999999999999999999999999999999987765

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.3e-11  Score=97.68  Aligned_cols=110  Identities=35%  Similarity=0.495  Sum_probs=93.4

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.++.++.+++..|.+++.+++||+| ++++++|+++..|+++.+......       ..++.+    +|... +.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~G~v~~~~l~~~~~~~~~~-------~~~v~~----~~~~~-~~   68 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD-PDERPIGIVTERDIVRAVAAGIDL-------DTPVSE----IMTRD-LV   68 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEeeHHHHHHHHhccCCC-------ccCHHH----hccCC-CE
Confidence            466789999999999999989999999999 479999999999998877543211       234555    66654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++...+||+|++| +++|+++.+|+++
T Consensus        69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g-~~~Gilt~~dl~~  111 (112)
T cd04624          69 TVDPDEPVAEAAKLMRKNNIRHHLVVDKGG-ELVGVISIRDLVR  111 (112)
T ss_pred             EECCCCcHHHHHHHHHHcCccEEEEEcCCC-cEEEEEEHHHhcc
Confidence            999999999999999999999999999887 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.33  E-value=1.7e-11  Score=99.83  Aligned_cols=110  Identities=19%  Similarity=0.303  Sum_probs=90.5

Q ss_pred             CcEEecCCCCHHHHHHHHhhcC-CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-CC
Q 014353          192 PFLALQKSNSFLTMLLLLSKYK-MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-NH  269 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~-~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~~  269 (426)
                      ++.++.++.++.++++.|.+++ .+.+||+| ++++++|+++..|++.......        ...++.+    +|.+ ..
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~   68 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD-NEGRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK   68 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEc-CCCcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence            5678899999999999987665 88899999 4789999999999988664221        1234555    5653 23


Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++++.+++++.++++.|.+++.+.+||+|+++ +++|+++.+||++
T Consensus        69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~-~~~Gvl~~~di~~  113 (114)
T cd04801          69 LVTVLSEESLAEVLKLLEEQGLDELAVVEDSG-QVIGLITEADLLR  113 (114)
T ss_pred             ceEECCCCcHHHHHHHHHHCCCCeeEEEcCCC-cEEEEEeccceec
Confidence            67899999999999999999999999999877 9999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.6e-11  Score=97.06  Aligned_cols=94  Identities=20%  Similarity=0.379  Sum_probs=84.1

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.+++++.+++..|.++++..+||+| ++++++|+++..|+....                           . +.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-~~~~~~Giv~~~dl~~~~---------------------------~-~~   52 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLD-DDGKLSGIITERDLIAKS---------------------------E-VV   52 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEEC-CCCCEEEEEEHHHHhcCC---------------------------C-cE
Confidence            566889999999999999999999999999 479999999999986521                           1 67


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++
T Consensus        53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~-~~~Giit~~di~~   95 (96)
T cd04614          53 TATKRTTVSECAQKMKRNRIEQIPIINGND-KLIGLLRDHDLLK   95 (96)
T ss_pred             EecCCCCHHHHHHHHHHhCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence            889999999999999999999999999877 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.5e-11  Score=100.47  Aligned_cols=119  Identities=24%  Similarity=0.456  Sum_probs=94.4

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh-----hhhccccccccccCCcc
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF-----ESWGKKKLSEIGLPIMS  266 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~-----~~~~~~~v~~~~~~im~  266 (426)
                      .+.++.++.++.+++..|.+.+.+.+||+|.++++++|+++..|++.++.........     ......++.+    +|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   77 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT   77 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence            5667899999999999999999999999994239999999999999877533211100     0011234555    565


Q ss_pred             cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353          267 ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL  316 (426)
Q Consensus       267 ~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  316 (426)
                      .. ++++.+++++.++++.|.+.+.+.+||+|++| +++|+||.+||+++
T Consensus        78 ~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~-~~~Gvit~~di~~~  125 (125)
T cd04631          78 RN-VITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDLLKA  125 (125)
T ss_pred             CC-ceEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-cEEEEEEHHHhhcC
Confidence            54 99999999999999999999999999999877 99999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.32  E-value=1.1e-11  Score=129.60  Aligned_cols=132  Identities=17%  Similarity=0.240  Sum_probs=111.6

Q ss_pred             HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353           47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP  126 (426)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~  126 (426)
                      .+..++.++++++  |.++..++++++++.+|.+.|.+++...+||+|++        ++++|+|+..|+.+.+....  
T Consensus       440 ~~~~L~~~~V~di--m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~--------g~lvGiVt~~dL~~~l~~~~--  507 (574)
T PRK01862        440 ERERLRTTQMREL--IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD--------GRFRGAVALKDITSDLLDKR--  507 (574)
T ss_pred             hhhHHhhCcHHHH--hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC--------CeEEEEEEHHHHHHHhhccc--
Confidence            3556788899998  88889999999999999999999999999999998        89999999999986543211  


Q ss_pred             CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHH
Q 014353          127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTML  206 (426)
Q Consensus       127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l  206 (426)
                                                                      .....++.++|..    ++.++++++++.+++
T Consensus       508 ------------------------------------------------~~~~~~v~dim~~----~~~~v~~d~~L~~al  535 (574)
T PRK01862        508 ------------------------------------------------DTTDKTAADYAHT----PFPLLTPDMPLGDAL  535 (574)
T ss_pred             ------------------------------------------------ccccchHHHhccC----CCeeECCCCCHHHHH
Confidence                                                            0112357788876    788999999999999


Q ss_pred             HHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHh
Q 014353          207 LLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       207 ~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~  242 (426)
                      +.|.+++.+.+||+|+++ ++++|++|..|+++.+.+
T Consensus       536 ~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        536 EHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             HHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999998533 589999999999998753

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=4e-11  Score=96.36  Aligned_cols=110  Identities=32%  Similarity=0.504  Sum_probs=91.7

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++..++++.++++.|.+.+...+||+|+++ +++|+++.+|+......... ...         ..+.++        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~~~-~~~---------~~~~~~--------   63 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDDG-RLVGIVTERDLLRALAEGGL-DPL---------VTVGDV--------   63 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEECCCC-CEEEEEeHHHHHHHHHhccC-Ccc---------ccHHHH--------
Confidence            67889999999999999999999999999877 99999999999987643211 000         002223        


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                        |..++.++.+++++.++++.|.+.+.+.++|+|++|+++|+||..|+++
T Consensus        64 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          64 --MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --hcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              3347889999999999999999999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.32  E-value=3.1e-11  Score=121.79  Aligned_cols=114  Identities=36%  Similarity=0.575  Sum_probs=96.8

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRK  340 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~  340 (426)
                      .|..+ ++++.+++++.++++.|.+++++++||+|++   + +++|+|+.+|+..... .              ..++.+
T Consensus        85 ~~~~~-~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~-~lvGIVt~rDL~~~~~-~--------------~~~V~d  147 (450)
T TIGR01302        85 GIISD-PVTISPETTVADVLELMERKGISGIPVVEDGDMTG-KLVGIITKRDIRFVKD-K--------------GKPVSE  147 (450)
T ss_pred             ceecC-ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC-eEEEEEEHHHHhhhhc-C--------------CCCHHH
Confidence            45544 8999999999999999999999999999987   5 9999999999975421 0              113444


Q ss_pred             HhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          341 YMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                      +|..         .++.++++++++.++++.|.+++.+.+||+|++|+++|+||++||++.+.
T Consensus       148 vm~~---------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       148 VMTR---------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             hhCC---------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            4431         27899999999999999999999999999999999999999999999863

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.32  E-value=2.3e-11  Score=97.84  Aligned_cols=99  Identities=24%  Similarity=0.358  Sum_probs=87.2

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhc
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEH  345 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  345 (426)
                      ....+.+++++.++.+.|.+.++..+||+|+   ++ +++|+++.+|+.+....                          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~-~~~G~v~~~dl~~~~~~--------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP-RLVGYILRSQLVVALKN--------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC-EEEEEEeHHHHHHHHHH--------------------------
Confidence            3678899999999999999999999999998   57 99999999999876321                          


Q ss_pred             CCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          346 HHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       346 ~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                           +|..++.++++++++.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus        56 -----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 -----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             -----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                 2334788999999999999999999999999996 789999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.32  E-value=4.9e-11  Score=97.31  Aligned_cols=112  Identities=36%  Similarity=0.513  Sum_probs=93.9

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      .|.+ .++++.++.++.++...|.++++.++||++..  +++|++|.+|+.+++..+.....           ++..+  
T Consensus         4 ~~~~-~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~~~~-----------~v~~v--   67 (117)
T COG0517           4 IMTK-DVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGKRLL-----------PVKEV--   67 (117)
T ss_pred             cccC-CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCCccc-----------cHHHh--
Confidence            3444 48999999999999999999999999999863  79999999999999765432100           23333  


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHh-CCCcEEEEEcCCC-cEEEEEeHHHHH
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDS-KKIHRIYVVDFNG-NLEGVITLRDII  399 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~-~~~~~l~Vvd~~~-~liGvIT~~Dll  399 (426)
                              |..++.++.+++++.++++.|.+ ++++++||+|+++ +++|++|.+|++
T Consensus        68 --------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          68 --------MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             --------ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                    34488999999999999999999 7999999999886 999999999974

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=2.6e-11  Score=98.47  Aligned_cols=111  Identities=23%  Similarity=0.374  Sum_probs=93.3

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      .+.++.++.++.++++.|.+.+.+.+||+| ++++++|+++..++.+.+......      ...++.+    +|.+. +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~G~v~~~~i~~~~~~~~~~------~~~~v~~----~~~~~-~~   70 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVD-EDGRLVGIFTDGDLRRALEKGLDI------LTLPVAD----VMTRN-PK   70 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEc-CCCCEEEEechHHHHHHHhccCcc------ccCCHHH----hhccC-Ce
Confidence            456788999999999999888889999999 478999999999999877543221      1235666    67664 78


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|..++.+.+||+|+++ +++|+|+..||++
T Consensus        71 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~iG~it~~di~~  113 (114)
T cd04604          71 TIDPDALAAEALELMEENKITALPVVDDNG-RPVGVLHIHDLLR  113 (114)
T ss_pred             EECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEEEHHHhhc
Confidence            999999999999999999999999999877 9999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.6e-11  Score=97.46  Aligned_cols=109  Identities=28%  Similarity=0.411  Sum_probs=89.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++.+++++.++++.|.+.+.+.+||+|+ + +++|+++..|+++.+..+....         ...++.+++       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~~~---------~~~~~~~~~-------   64 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNIGRLIVVDN-E-KPVGIITERDLVKKVVSRNLKP---------REVPVGEVM-------   64 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCCCEEEEEEC-C-EEEEEEEHHHHHHHHhhccCCc---------ccCCHHHhc-------
Confidence            678899999999999999999999999996 5 8999999999998654321100         011233333       


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                         ..++.++.+++++.++++.|.+++.+.+||+|++ +++|+||..|+++
T Consensus        65 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          65 ---STPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ---CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence               3378899999999999999999999999999965 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.32  E-value=3.4e-11  Score=96.58  Aligned_cols=104  Identities=17%  Similarity=0.264  Sum_probs=89.1

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.++.++.+++..|.+++.+.+||+| ++|+++|+++..|+.+...             .++.+    +|.+. +.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d-~~g~~~Giv~~~dl~~~~~-------------~~~~~----~~~~~-~~   62 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVD-ADGQPLGFVTRREAARASG-------------GCCGD----HAEPF-KV   62 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEeHHHHHHhcc-------------cchhh----hcccC-CE
Confidence            456788999999999999989999999998 4799999999999986421             13445    56654 78


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.++++..+||+|+++ +++|+|+.+|++.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~~l~~  105 (106)
T cd04582          63 TVSVDDDLRIVLSRMFAHDMSWLPCVDEDG-RYVGEVTQRSIAD  105 (106)
T ss_pred             EECCCCCHHHHHHHHHHCCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence            899999999999999999999999999887 9999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.32  E-value=1.2e-11  Score=125.38  Aligned_cols=110  Identities=24%  Similarity=0.325  Sum_probs=92.5

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH  346 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  346 (426)
                      ++++.+++++.++++.|.+++++.+||+|+   ++ +++|+||..|+....  .            ....++.++|..  
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g-kLvGIVT~~DLr~~~--~------------~~~~~V~dIMt~--  169 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG-KLLGIVTSRDYRISR--M------------SLDTKVKDFMTP--  169 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC-EEEEEEEcHHhhccc--c------------CCCCCHHHHhCC--
Confidence            579999999999999999999999999997   46 999999999996431  0            011234555432  


Q ss_pred             CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                            .++++++.+++++.+|+++|.++++.++||+|++|+++|+||.+||++..
T Consensus       170 ------~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        170 ------FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             ------CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence                  12678999999999999999999999999999989999999999999965

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.31  E-value=2.6e-11  Score=99.70  Aligned_cols=117  Identities=26%  Similarity=0.379  Sum_probs=90.5

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH-HHHHHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA-KNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  348 (426)
                      +.++++++++.++++.|.+.+++++||+|+++ +++|+++..|+.+...... .... .... .....++.+++      
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~v~~~~------   73 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVVDEEG-RLVGIVTDRDLRDASPSPF-TTLS-EHELYLLLKMPVKEIM------   73 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEECCCC-cEEEEEEHHHHHHHhhhhc-ccch-hhhhhhhcCcCHHHHh------
Confidence            78899999999999999999999999999987 9999999999987642110 0000 0000 00011233333      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          ..++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus        74 ----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          74 ----TKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             ----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence                347899999999999999999999999999986 99999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.31  E-value=2.5e-11  Score=97.83  Aligned_cols=105  Identities=22%  Similarity=0.248  Sum_probs=91.1

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.+++++.+++..|.+++.+.+||+| ++++++|+++..|+.....            ..++.+    +|... +.
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-~~~~~~G~v~~~~l~~~~~------------~~~v~~----~~~~~-~~   64 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD-EKNKVVGIVTSKDVAGKDP------------DTTIEK----VMTKN-PI   64 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEEC-CCCeEEEEecHHHHhcccc------------cccHHH----HhcCC-Ce
Confidence            677889999999999999998989999999 4899999999999864311            235666    66654 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++.+.+||+|++| +++|+++..|+++
T Consensus        65 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~di~~  107 (108)
T cd04596          65 TVNPKTSVASVAHMMIWEGIEMLPVVDDNK-KLLGIISRQDVLK  107 (108)
T ss_pred             EECCCCCHHHHHHHHHHcCCCeeeEEcCCC-CEEEEEEHHHhhc
Confidence            999999999999999999999999999888 9999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.31  E-value=2.1e-11  Score=123.75  Aligned_cols=115  Identities=19%  Similarity=0.221  Sum_probs=96.5

Q ss_pred             cccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          265 MSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       265 m~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                      |..+ ++++.+++++.++++.|.+++++.+||+|++   + +++|+||.+|+.....               ...++.++
T Consensus       106 mi~d-pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G-klvGIVT~~DL~~v~~---------------~~~~V~eI  168 (505)
T PLN02274        106 FVSD-PVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS-KLLGYVTKRDWDFVND---------------RETKLSEV  168 (505)
T ss_pred             ccCC-CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC-eEEEEEEHHHHhhccc---------------cCCcHHHH
Confidence            4444 8999999999999999999999999999973   6 9999999999965421               11235555


Q ss_pred             hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                      |..        ..++.++.+++++.++++.|.++++..+||+|++++++|+||++||++.+..
T Consensus       169 Mt~--------~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        169 MTS--------DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             hcc--------CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            543        1137899999999999999999999999999999999999999999999864

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.5e-11  Score=99.93  Aligned_cols=121  Identities=16%  Similarity=0.265  Sum_probs=94.8

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++++++++++.+|++.|.++++..+||+|.+        ++++|+++..|++...........               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~~~~~~~~~---------------   57 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA--------GELIGIITRRDIIRAGSVRTSVED---------------   57 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEcHHHHhhccccccccc---------------
Confidence            367899999999999999999999999999987        899999999999754211100000               


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG  223 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~  223 (426)
                      +                     .     ........++.++|..    ++..+.+++++.+++..|.+++.+.+||++ +
T Consensus        58 ~---------------------~-----~~~~~~~~~~~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~  106 (122)
T cd04635          58 Q---------------------Q-----RTQTKASPTVEKIMST----PVYSVTPDDSIATAVELMLEHDIGRLPVVN-E  106 (122)
T ss_pred             h---------------------h-----hhhhhccCcHHHHhcC----CCeeECCCCCHHHHHHHHHHcCCCeeeEEc-C
Confidence            0                     0     0000123457778765    788999999999999999999999999999 4


Q ss_pred             CCeEEEEEeHHHHHH
Q 014353          224 EGTIDNIITQSSVIH  238 (426)
Q Consensus       224 ~~~l~Giis~~Dl~~  238 (426)
                      +|+++|++|..|+++
T Consensus       107 ~g~~~Gvit~~dl~~  121 (122)
T cd04635         107 KDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCcEEEEEEhHHhhc
Confidence            789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.30  E-value=5.9e-11  Score=118.28  Aligned_cols=182  Identities=15%  Similarity=0.187  Sum_probs=132.6

Q ss_pred             ccccchhhhcCCC----CChhH--HHhhhhc--cCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeecCC
Q 014353           28 MKVEDLWDVLEPQ----LSPTE--KLNACFE--SIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDA   97 (426)
Q Consensus        28 ~~~~~~~~~l~~~----~~~~~--~~~~~~~--~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~   97 (426)
                      +|.+++...++..    +..+|  -+++.++  .+++.++  |+  .++++++.++++.++++.|.++++..+||++++.
T Consensus       157 ~t~eEl~~lv~~~~~~g~~~~E~~~i~~vl~l~~~~v~di--Mtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~  234 (408)
T TIGR03520       157 ISVDQLSQALELTDEEDTTKEEQKILQGIVSFGNTDTKQV--MRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETI  234 (408)
T ss_pred             CCHHHHHHHHHhHhhcCCChHHHHHHHHHhccCCCEeeee--CCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCC
Confidence            5677777765321    44433  2666665  7888888  75  4899999999999999999999999999999764


Q ss_pred             CCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccc
Q 014353           98 PEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYK  177 (426)
Q Consensus        98 ~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (426)
                             ++++|+|+..|++.++..                                                      .
T Consensus       235 -------d~ivGiv~~kDll~~~~~------------------------------------------------------~  253 (408)
T TIGR03520       235 -------DNITGVLYIKDLLPHLNK------------------------------------------------------K  253 (408)
T ss_pred             -------CceEEEEEHHHHHhHhcc------------------------------------------------------C
Confidence                   799999999999753210                                                      0


Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      ...+.+++.     ++.++++++++.++++.|.+++.|..+|+| +.|.++|+||..|++..+......+ ... ....+
T Consensus       254 ~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivgei~de-~d~-~~~~i  325 (408)
T TIGR03520       254 NFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVGDISDE-FDD-EDLIY  325 (408)
T ss_pred             CCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhCCCCCc-CCc-Cccce
Confidence            113556665     678999999999999999999999999999 4789999999999999985321111 000 00111


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHH
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLM  286 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m  286 (426)
                      ..     . .+..+.++...++.++.+.|
T Consensus       326 ~~-----~-~~~~~~v~G~~~l~~l~~~l  348 (408)
T TIGR03520       326 SK-----I-DDNNYVFEGKTSLKDFYKIL  348 (408)
T ss_pred             EE-----e-CCCeEEEEeccCHHHHHHHh
Confidence            11     0 12356777778888877766

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.30  E-value=6.3e-11  Score=95.36  Aligned_cols=106  Identities=23%  Similarity=0.337  Sum_probs=91.1

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      .+..+.++.++.+++..|.+++..++||+|. +++++|+++..|+......           ..++.+    +|... +.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~~~-~~   65 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE-----------AKSLED----IMLED-VF   65 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc-----------CCcHhH----hhcCC-ce
Confidence            5667899999999999999899999999994 7899999999999875431           134555    66654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+.+.+.+||+|++| +++|++|.+|+++
T Consensus        66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g-~~~Gvit~~~l~~  108 (109)
T cd04583          66 TVQPDASLRDVLGLVLKRGPKYVPVVDEDG-KLVGLITRSSLVD  108 (109)
T ss_pred             EECCCCcHHHHHHHHHHcCCceeeEECCCC-eEEEEEehHHhhc
Confidence            999999999999999999999999999888 9999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=4.9e-11  Score=97.22  Aligned_cols=110  Identities=21%  Similarity=0.405  Sum_probs=88.4

Q ss_pred             CcEEecCCCCHHHHHHHHhhcC-CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353          192 PFLALQKSNSFLTMLLLLSKYK-MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI  270 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~-~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~  270 (426)
                      ++..+.++.++.++++.|.+++ ...++|++  +++++|+++..|++..+......      ...++.+    +|... +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~~~------~~~~i~~----~~~~~-~   68 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGKDL------SDLPIGE----VMTQP-V   68 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCCCc------cccCHHH----hcCCC-c
Confidence            4567889999999999998878 56677777  58999999999998866432111      1235566    66654 7


Q ss_pred             eEeCCC--CcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          271 VKVYED--EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       271 ~~v~~~--~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      .++.++  +++.++++.|.+++...+||+|++| +++|+||.+|+++
T Consensus        69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Gvit~~dl~~  114 (115)
T cd04620          69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDDQG-QLIGLVTAESIRQ  114 (115)
T ss_pred             EEEecccccCHHHHHHHHHHhCCceEEEEcCCC-CEEEEEEhHHhhc
Confidence            888877  7899999999999999999999888 9999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=6.4e-11  Score=95.86  Aligned_cols=109  Identities=27%  Similarity=0.406  Sum_probs=91.3

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.++.++.+++..|.+++.+.+||+| ++++++|+++..|++.+......       ...++.+    +|... +.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~~~-~~   68 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKD-NEEKLKGVVTFTDILDLDLFESF-------LEKKVFN----IVSQD-VF   68 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEc-CCCCEEEEEehHHhHHHHhhccc-------ccCcHHH----HhcCC-cE
Confidence            566789999999999999999999999999 47899999999999876532211       1235566    56654 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++...+||+|+ | +++|+||..|++.
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~di~~  110 (111)
T cd04626          69 YVNEEDTIDEALDIMREKQIGRLPVVDD-N-KLIGVVRTKDILD  110 (111)
T ss_pred             EEcCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEhHHhcc
Confidence            9999999999999999999999999998 7 9999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.29  E-value=1.2e-10  Score=117.25  Aligned_cols=122  Identities=18%  Similarity=0.210  Sum_probs=103.0

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      .....++.++|..    +++++.+++++.+++..|.+++++.+||+|  +++++|++|..|+... .           ..
T Consensus        84 ~v~~VKv~eim~~----~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD--~gklvGIVT~rDL~~~-~-----------~~  145 (475)
T TIGR01303        84 TVAFVKSRDLVLD----TPITLAPHDTVSDAMALIHKRAHGAAVVIL--EDRPVGLVTDSDLLGV-D-----------RF  145 (475)
T ss_pred             HHhhcchhhcccc----CCeEECCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEEEHHHhhcC-C-----------CC
Confidence            3445567777776    788999999999999999999999999988  4799999999997321 0           02


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                      .++.+    +|+.+ ++++.+++++.+++++|.+++++.+||+|+++ +++|+||.+||++....+
T Consensus       146 ~~V~d----IMt~~-litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       146 TQVRD----IMSTD-LVTAPADTEPRKAFDLLEHAPRDVAPLVDADG-TLAGILTRTGALRATIYT  205 (475)
T ss_pred             CCHHH----HccCC-ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhCC
Confidence            45777    78864 99999999999999999999999999999888 999999999999986544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.29  E-value=8.5e-11  Score=111.82  Aligned_cols=147  Identities=14%  Similarity=0.269  Sum_probs=115.6

Q ss_pred             cccchhhhcCC-----CCChhHH--Hhhhh--ccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCC
Q 014353           29 KVEDLWDVLEP-----QLSPTEK--LNACF--ESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDA   97 (426)
Q Consensus        29 ~~~~~~~~l~~-----~~~~~~~--~~~~~--~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~   97 (426)
                      |.++|...++.     .++.++.  +++.+  +..++.++  |+.  +++++++++++.++++.+.+++...+||++.+.
T Consensus        33 t~eEl~~l~~~~~~~g~l~~~e~~~i~~vl~l~~~~V~di--Mtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~  110 (292)
T PRK15094         33 NRDELLALIRDSEQNDLIDEDTRDMLEGVMDIADQRVRDI--MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK  110 (292)
T ss_pred             CHHHHHHHHHhHhhcCCCCHHHHHHHHHHhccCCCEEeEE--ccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC
Confidence            45666666532     2665442  66664  46788887  755  799999999999999999999999999998753


Q ss_pred             CCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccc
Q 014353           98 PEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYK  177 (426)
Q Consensus        98 ~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (426)
                             ++++|+|+..|++.++....                                                    .
T Consensus       111 -------d~iiGiv~~kDll~~~~~~~----------------------------------------------------~  131 (292)
T PRK15094        111 -------DHIEGILMAKDLLPFMRSDA----------------------------------------------------E  131 (292)
T ss_pred             -------CcEEEEEEHHHHHhHhhccC----------------------------------------------------C
Confidence                   79999999999985431100                                                    0


Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      ...+.++|.     ++.++.++.++.+++..|.+++.+.+||+|+ .|.++|+||..|++..+..
T Consensus       132 ~~~l~~l~r-----~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        132 AFSMDKVLR-----QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             cCCHHHHcC-----CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence            123667776     4558999999999999999999999999994 7889999999999999864

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.29  E-value=8.4e-11  Score=95.08  Aligned_cols=109  Identities=26%  Similarity=0.364  Sum_probs=91.0

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.++.++.++.+.|.+++.+.+||+| + ++++|+++..|++..+......      ...++.+    +|..+ ++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~-~-~~~~G~v~~~~l~~~~~~~~~~------~~~~i~~----~~~~~-~~   68 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD-D-GRLVGIVTDRDLRNRVVAEGLD------PDTPVSE----VMTAP-PI   68 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEE-C-CEEEEEEEhHHHHHHHhccCCC------ccCCHHH----HhCCC-Ce
Confidence            566789999999999999988999999999 3 9999999999998765432110      1234566    56554 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++.+.+||+++ | +++|+++.+|+++
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Giit~~di~~  110 (111)
T cd04800          69 TIPPDATVFEALLLMLERGIHHLPVVDD-G-RLVGVISATDLLR  110 (111)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhc
Confidence            9999999999999999999999999998 7 9999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=7.5e-11  Score=95.55  Aligned_cols=110  Identities=21%  Similarity=0.327  Sum_probs=89.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      .+.++++++++.+|++.|.+++...+||.+ +        ++++|+++..|+.+++.....                   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~--------~~~~G~v~~~dl~~~~~~~~~-------------------   53 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R--------GELVGLLTFREVLQAMAQHGA-------------------   53 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C--------CEEEEEEEHHHHHHHHHhcCC-------------------
Confidence            567899999999999999988877766654 4        799999999999876542100                   


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                    .....++.++|..    ++.++.+++++.+++..|.+++...+||++  +
T Consensus        54 ------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~   97 (112)
T cd04625          54 ------------------------------GVLDTTVRAIMNP----EPIVASPDDSIDEVRRLMVERHLRYLPVLD--G   97 (112)
T ss_pred             ------------------------------chhcCCHHHHhCC----CCeEECCCCCHHHHHHHHHHcCCCeeeEEE--C
Confidence                                          0112357788875    678899999999999999999999999998  5


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|++|..|+++
T Consensus        98 ~~~~Gvvt~~dl~~  111 (112)
T cd04625          98 GTLLGVISFHDVAK  111 (112)
T ss_pred             CEEEEEEEHHHhhc
Confidence            89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.28  E-value=7.4e-11  Score=95.69  Aligned_cols=111  Identities=22%  Similarity=0.335  Sum_probs=91.4

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.+++++.+++..|.+++.+.+||++ + ++++|+++..|++..+.......     ...++.+    +|... +.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~G~v~~~dl~~~~~~~~~~~-----~~~~v~~----i~~~~-~~   69 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD-G-NKLVGIFTSKDIALRVVAQGLDP-----ESTLVER----VMTPN-PV   69 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE-C-CEEEEEEEhHHHHHHHHhcCCCc-----CcCCHHH----hcCCC-Ce
Confidence            567789999999999999988999999999 4 99999999999986554221100     0135666    67654 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++...+||+++++ +++|+||..|++.
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~-~~~Gvvs~~dl~~  112 (113)
T cd04587          70 CATSDTPVLEALHLMVQGKFRHLPVVDKSG-QVVGLLDVTKLTH  112 (113)
T ss_pred             EEcCCCCHHHHHHHHHHcCCCcccEECCCC-CEEEEEEHHHhcc
Confidence            999999999999999999999999999877 9999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.28  E-value=7.7e-11  Score=96.74  Aligned_cols=116  Identities=28%  Similarity=0.385  Sum_probs=92.9

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhh----hhccccccccccCCccc
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE----SWGKKKLSEIGLPIMSA  267 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~----~~~~~~v~~~~~~im~~  267 (426)
                      ++.++.++.++.++++.|.+.+...+||+| + ++++|+++..|+..............    .....++.+    +|.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVD-R-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMTR   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEec-C-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hccC
Confidence            566789999999999999999999999999 3 89999999999988764321100000    011234555    6766


Q ss_pred             CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       268 ~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      + +.++.+++++.++++.|.+.+.+.+||+|++| +++|+||..|+++
T Consensus        76 ~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvvt~~di~~  121 (122)
T cd04585          76 D-PITVSPDASVEEAAELMLERKISGLPVVDDQG-RLVGIITESDLFR  121 (122)
T ss_pred             C-CeEeCCCCcHHHHHHHHHHcCCCceeEECCCC-cEEEEEEHHHhhh
Confidence            4 89999999999999999999999999999877 9999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.28  E-value=1.1e-10  Score=94.25  Aligned_cols=108  Identities=27%  Similarity=0.499  Sum_probs=91.6

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.+++++.++++.|.+++++++||++ + +++.|+++..|+++.......        ..++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~~l~~~~~~~~~--------~~~v~~----~~~~-~~~   66 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD-D-GKLVGIVTLSDIAHAIARGLE--------LAKVKD----VMTK-DVI   66 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHhcccc--------ccCHHH----HhcC-Cce
Confidence            567788999999999999999999999999 4 899999999999887643211        134555    5554 489


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+.+.+.+||+|++| +++|+|+..|+++
T Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~  109 (110)
T cd04588          67 TIDEDEQLYDAIRLMNKHNVGRLIVTDDEG-RPVGIITRTDILR  109 (110)
T ss_pred             EECCCCCHHHHHHHHHhcCCCEEEEECCCC-CEEEEEEhHHhhc
Confidence            999999999999999999999999999877 9999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.28  E-value=1.1e-10  Score=94.20  Aligned_cols=109  Identities=26%  Similarity=0.368  Sum_probs=92.5

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.++.++.++++.|.+++.+.+||++ + ++++|+++..|+.+.......       ...++.+    +|... ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~~~-~~   67 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVD-D-GRPLGIVTERDILRLLASGPD-------LQTPVGE----VMSSP-LL   67 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEeHHHHHHHHhcCCC-------CCcCHHH----hcCCC-ce
Confidence            566789999999999999988999999998 3 899999999999887753221       1345666    66654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+.+.+.+||+|++| +++|+|+.+|+++
T Consensus        68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~di~~  110 (111)
T cd04611          68 TVPADTSLYDARQLMREHGIRHLVVVDDDG-ELLGLLSQTDLLQ  110 (111)
T ss_pred             EECCCCCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEEhHHhhc
Confidence            999999999999999999999999999888 9999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.1e-10  Score=94.60  Aligned_cols=111  Identities=23%  Similarity=0.391  Sum_probs=92.2

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++++++++++.+|++.|.+++.+.+||+|+         ++++|+++..|++.++.....                  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------~~~~G~v~~~dl~~~~~~~~~------------------   53 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN---------EKPVGIITERDLVKKVVSRNL------------------   53 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC---------CEEEEEEEHHHHHHHHhhccC------------------
Confidence            46788999999999999999999999999996         689999999999876543210                  


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG  223 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~  223 (426)
                                                     .....++.++|..    ++..+.+++++.++++.|.+++.+.+||++. 
T Consensus        54 -------------------------------~~~~~~~~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-   97 (112)
T cd04802          54 -------------------------------KPREVPVGEVMST----PLITIDPNASLNEAAKLMAKHGIKRLPVVDD-   97 (112)
T ss_pred             -------------------------------CcccCCHHHhcCC----CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-
Confidence                                           0112356677765    7888999999999999999999999999993 


Q ss_pred             CCeEEEEEeHHHHHH
Q 014353          224 EGTIDNIITQSSVIH  238 (426)
Q Consensus       224 ~~~l~Giis~~Dl~~  238 (426)
                      + +++|+++..|+++
T Consensus        98 ~-~~~Gvi~~~di~~  111 (112)
T cd04802          98 D-ELVGIVTTTDIVM  111 (112)
T ss_pred             C-EEEEEEEhhhhhc
Confidence            4 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.27  E-value=6.7e-11  Score=96.95  Aligned_cols=111  Identities=19%  Similarity=0.304  Sum_probs=87.8

Q ss_pred             eeEeCCCCcHHHHHHHHHhcC-CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH-HHHHHHHhhhcCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKK-IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF-LTAVRKYMEEHHH  347 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~  347 (426)
                      +.++.+++++.++++.|...+ ++.+||+|+ | +++|+++..|+..++..... .       ..+ ..++.        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~-~~~G~v~~~~l~~~~~~~~~-~-------~~~~~~~v~--------   64 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVVDD-G-RPVGLIMREALMELLSTPYG-R-------ALYGKKPVS--------   64 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEEEC-C-eeEEEEEHHHHHHHHhchhh-H-------HHHcCCcHH--------
Confidence            678899999999999998877 889999999 7 99999999999876542100 0       000 11233        


Q ss_pred             CCCCCcCCceeecCCCCHHHHHHHHHhCCCc---EEEEEcCCCcEEEEEeHHHHHH
Q 014353          348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIH---RIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~---~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                        ++|..++.++.+++++.++++.|.+++.+   ..+|++++|+++|+||..|+++
T Consensus        65 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          65 --EVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             --HhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence              34455889999999999999999999864   4468888899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.26  E-value=1.5e-10  Score=93.69  Aligned_cols=110  Identities=23%  Similarity=0.285  Sum_probs=91.0

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      .++.+.++.++.+++..|.+++...++|+| + +++.|+++..|+...+.....      ....++.+    +|.++ +.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~----~~~~~-~~   68 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRD-G-DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE----IATFP-LI   68 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEec-C-CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH----HhCCC-cE
Confidence            456788999999999999988999999999 3 789999999999887643211      01345666    67654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL  316 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  316 (426)
                      .+.+++++.++++.|.+++...+||+|+ + +++|+|+..|++++
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~dl~~~  111 (111)
T cd04589          69 TVDPDDFLFNALLLMTRHRIHRVVVREG-G-EVVGVLEQTDLLSF  111 (111)
T ss_pred             EECCCCcHHHHHHHHHHhCccEEEEeeC-C-EEEEEEEhHHhhcC
Confidence            9999999999999999999999999986 6 99999999999753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.26  E-value=1.2e-10  Score=94.14  Aligned_cols=108  Identities=22%  Similarity=0.317  Sum_probs=90.7

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI  270 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~  270 (426)
                      .++++.++.++.+++..|.+.+...+||++. + ++++|+++..|+++.......        ..++.+    +|.  ++
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-~~~~~~G~v~~~~l~~~~~~~~~--------~~~~~~----~~~--~~   66 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG-DLDNIIGVVHVKDLLRALAEGEE--------DLDLRD----LLR--PP   66 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-CCceEEEEEEHHHHHHHHHcCCC--------cCCHHH----Hhc--CC
Confidence            4578899999999999999889999999994 5 899999999999987753211        123444    443  37


Q ss_pred             eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      .++.+++++.++++.|.+++.+.+||+|++| +++|+||.+|++.
T Consensus        67 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~  110 (111)
T cd04590          67 LFVPESTPLDDLLEEMRKERSHMAIVVDEYG-GTAGLVTLEDILE  110 (111)
T ss_pred             eecCCCCcHHHHHHHHHhcCCcEEEEEECCC-CEEEEeEHHHhhc
Confidence            8899999999999999999999999999888 9999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=5.3e-11  Score=98.91  Aligned_cols=112  Identities=19%  Similarity=0.189  Sum_probs=87.7

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHH-----HhccCcchhhhhccccccccccCCcc
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHML-----AECAGLEWFESWGKKKLSEIGLPIMS  266 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l-----~~~~~~~~~~~~~~~~v~~~~~~im~  266 (426)
                      ++.++.+++++.+++..|.+++.+.+||+| ++++++|+++..|+....     .....     .....++.+    +|.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-~~~~~~Giv~~~dl~~~~~~~~~~~~~~-----~~~~~~v~~----im~   71 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVD-SDDNFIGVITAVDLLGEEPIKRIQEGGI-----SRSELTVAD----VMT   71 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHhhChhhHHHHHcCC-----CchheEHHH----hcC
Confidence            456889999999999999989999999999 478999999999988632     21100     011244666    676


Q ss_pred             cCCee--Ee----CCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHH
Q 014353          267 ANHIV--KV----YEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQF  315 (426)
Q Consensus       267 ~~~~~--~v----~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~  315 (426)
                      +. ..  .+    .+++++.++++.|.+++.+.+||+|++ | +++|+||.+||++
T Consensus        72 ~~-~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~-~~~G~it~~di~~  125 (126)
T cd04640          72 PK-EDLKALDLEELENASVGDVVETLKASGRQHALVVDREHH-QIRGIISTSDIAR  125 (126)
T ss_pred             ch-hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCC-EEEEEEeHHHHhh
Confidence            53 32  23    268899999999999999999999986 6 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.25  E-value=2e-10  Score=92.73  Aligned_cols=107  Identities=30%  Similarity=0.502  Sum_probs=91.3

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.++.++.++...|.+++..++||+| + ++++|+++..|+.+.+....        ...++.+    +|... +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~dl~~~~~~~~--------~~~~~~~----~~~~~-~~   67 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVE-G-GRVVGIISRRDVEKALRHGL--------GHAPVKD----YMSTD-VV   67 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEee-C-CEEEEEEEHHHHHHHHhccc--------ccCcHHH----HhcCC-CE
Confidence            677889999999999999888889999999 4 89999999999987663221        1345666    67654 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++.+.+||+| +| +++|+||..|+++
T Consensus        68 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~~~Gvvt~~di~~  109 (110)
T cd04595          68 TVPPDTPLSEVQELMVEHDIGRVPVVE-DG-RLVGIVTRTDLLR  109 (110)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeeEEEe-CC-EEEEEEEhHHhhc
Confidence            999999999999999999999999999 67 9999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.25  E-value=4e-11  Score=113.37  Aligned_cols=109  Identities=22%  Similarity=0.333  Sum_probs=90.9

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|.++++.++.+++++.++++.|.+.+++.+||+|++| +++|+++.+|+.+....+.           ....++.+++ 
T Consensus       160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g-~~~Givt~~dl~~~~~~~~-----------~~~~~v~~im-  226 (268)
T TIGR00393       160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENN-QLVGVFTDGDLRRALLGGG-----------SLKSEVRDFM-  226 (268)
T ss_pred             HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCC-CEEEEEEcHHHHHHHhcCC-----------cccCcHHHhC-
Confidence            77653388999999999999999999999999999888 9999999999988653211           0112344444 


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEe
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVIT  394 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT  394 (426)
                               .+++.++.+++++.++++.|.+++.+++||+|++|+++|+|+
T Consensus       227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                     347889999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.5e-10  Score=95.36  Aligned_cols=116  Identities=20%  Similarity=0.336  Sum_probs=92.9

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhh----hhccccccccccCCccc
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE----SWGKKKLSEIGLPIMSA  267 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~----~~~~~~v~~~~~~im~~  267 (426)
                      +++++.++.++.+++..|.+++++++||+| + ++++|+++..++.+.+..........    .....++.+    +|..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE-D-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMTR   75 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEe-C-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhcC
Confidence            567889999999999999999999999999 3 89999999999988764321100000    001234555    6665


Q ss_pred             CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       268 ~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      + ++++.+++++.++++.|.+++...+||+|+++ +++|+++..|++.
T Consensus        76 ~-~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~-~~~Gvit~~dll~  121 (122)
T cd04637          76 D-PITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDLLK  121 (122)
T ss_pred             C-CeeeCCCCcHHHHHHHHHHcCCCeEeEECCCC-CEEEEEEHHHhhh
Confidence            4 89999999999999999999999999999877 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.4e-10  Score=93.00  Aligned_cols=103  Identities=31%  Similarity=0.444  Sum_probs=87.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      +.++..+.++.++++.|.+.+++.+||+|+++ +++|+++.+++....  ..              .++.+++.      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~g~v~~~~l~~~~--~~--------------~~~~~~~~------   59 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSG-ELVGIITRKDLLRNP--EE--------------EQLALLMT------   59 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEHHHHHhcc--cc--------------chHHHHhc------
Confidence            78889999999999999998999999999877 999999999997531  10              12333333      


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                          .++.++..++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus        60 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          60 ----RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             ----CCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                37889999999999999999999999999994 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.7e-10  Score=93.57  Aligned_cols=110  Identities=24%  Similarity=0.441  Sum_probs=90.3

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHH-HHHhccCcchhhhhccccccccccCCcccCCe
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIH-MLAECAGLEWFESWGKKKLSEIGLPIMSANHI  270 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~-~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~  270 (426)
                      .+.++.+++++.+++..|.+++.+.+||+| + ++++|+++..|++. .+......      ...++.+    +|... +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~i~~~~l~~~~~~~~~~~------~~~~~~~----~~~~~-~   68 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCE-N-DRLVGIVTDRDIVVRAVAEGRDP------DTTTVGD----VMTRG-V   68 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEhHHHHHHHhhccCCc------ccCCHHH----hccCC-c
Confidence            456789999999999999999999999999 4 99999999999873 33222111      1123565    66654 8


Q ss_pred             eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      .++.+++++.++++.|.+.+.+++||+|++| +++|+|+..|+++
T Consensus        69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~  112 (113)
T cd04622          69 VTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR  112 (113)
T ss_pred             cEECCCCCHHHHHHHHHHcCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence            8999999999999999999999999999877 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.24  E-value=1.9e-10  Score=94.42  Aligned_cols=119  Identities=24%  Similarity=0.395  Sum_probs=94.4

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      ++.++++++++.+|+..|.+++.+.+||+|++        ++++|+++..|+............               .
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~~~~~~~~~---------------~   58 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE--------GRLVGIVTDRDLRDASPSPFTTLS---------------E   58 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEHHHHHHHhhhhcccch---------------h
Confidence            67899999999999999999999999999998        899999999999764322110000               0


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                             ..   .......++.++|..    +...+.+++++.+++..|.+++.+.+||++ + 
T Consensus        59 -----------------------~~---~~~~~~~~v~~~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-  106 (121)
T cd04584          59 -----------------------HE---LYLLLKMPVKEIMTK----DVITVHPLDTVEEAALLMREHRIGCLPVVE-D-  106 (121)
T ss_pred             -----------------------hh---hhhhcCcCHHHHhhC----CCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-
Confidence                                   00   001223457788876    788999999999999999999999999998 3 


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|+++..|+++
T Consensus       107 ~~~~Gvv~~~di~~  120 (121)
T cd04584         107 GRLVGIITETDLLR  120 (121)
T ss_pred             CEEEEEEEHHHhhc
Confidence            89999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.5e-10  Score=95.07  Aligned_cols=115  Identities=25%  Similarity=0.425  Sum_probs=92.1

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcc----hhhhhccccccccccCCccc
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLE----WFESWGKKKLSEIGLPIMSA  267 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~----~~~~~~~~~v~~~~~~im~~  267 (426)
                      ++.++.+++++.+++..|.+++++.+||+| + ++++|+++..++...+.......    ....+...++.+    +|..
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~-~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE-G-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----IMTR   75 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE-C-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----HccC
Confidence            567889999999999999989999999999 3 99999999999987764221100    000112234555    6665


Q ss_pred             CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       268 ~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      . +.++.+++++.++++.|.+.+.+.+||+|+ + +++|+|+.+|+++
T Consensus        76 ~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~dl~~  120 (121)
T cd04633          76 P-VITIEPDTSVSDVASLMLENNIGGLPVVDD-G-KLVGIVTRTDILR  120 (121)
T ss_pred             C-ceEECCCCcHHHHHHHHHHcCCCcccEEEC-C-EEEEEEEHHHhhc
Confidence            4 899999999999999999999999999998 7 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.24  E-value=6.1e-11  Score=111.46  Aligned_cols=148  Identities=20%  Similarity=0.320  Sum_probs=125.3

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      +...++.+    +|.+ +.+..+..+++..++++.+....+.++|+..++-++++|++..+|+++++...+.+.      
T Consensus       197 Le~~tV~D----IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~------  266 (423)
T COG4536         197 LENLTVSD----IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFT------  266 (423)
T ss_pred             cccceeee----eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCccc------
Confidence            33456777    7776 569999999999999999999999999999877678999999999999987654211      


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF  410 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~  410 (426)
                          ...+...+           ..|+++++.+++.+-+..|.+++-|-..|||+.|.+.|+||..||+..++++..+.-
T Consensus       267 ----k~d~~~~a-----------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~  331 (423)
T COG4536         267 ----KEDILRAA-----------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEH  331 (423)
T ss_pred             ----HhHHHHHh-----------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccC
Confidence                11122222           278999999999999999999999999999999999999999999999999999877


Q ss_pred             cccccccccCCCCC
Q 014353          411 GDFFDGVLPLPENS  424 (426)
Q Consensus       411 ~~~~~~~~~~~~~~  424 (426)
                      +..-++..+++|++
T Consensus       332 d~~~~ev~~q~dgs  345 (423)
T COG4536         332 DTLAKEVIPQSDGS  345 (423)
T ss_pred             cccchhhcccCCCc
Confidence            77888888888875

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.24  E-value=1.7e-10  Score=93.19  Aligned_cols=109  Identities=26%  Similarity=0.390  Sum_probs=91.0

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.+++++.+++..|.+.+..++||+| + ++++|+++..|+.+....... .      ..++.+    .|..+ +.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~-~------~~~~~~----~~~~~-~~   67 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD-D-GRLVGIVTLADIRRVPAEGRE-A------TVLVGD----VMTRD-PV   67 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEee-C-CeEEEEEEHHHHHHHHhcCcc-c------ccCHHH----hccCC-Ce
Confidence            567889999999999999988899999999 4 999999999999876643211 0      123444    56654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++..++++.++++.|.+++.+.+||+|+++ +++|+||..|+++
T Consensus        68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~  110 (111)
T cd04612          68 TASPDETLRDALKRMAERDIGRLPVVDDSG-RLVGIVSRSDLLR  110 (111)
T ss_pred             EECCCCCHHHHHHHHHhCCCCeeeEEcCCC-CEEEEEEHHHhhh
Confidence            999999999999999999999999999877 9999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.24  E-value=1.2e-10  Score=94.93  Aligned_cols=106  Identities=17%  Similarity=0.295  Sum_probs=87.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeec---CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDV---DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~---~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      +++++.+++++.+|++.|.++++..+||+|+   +        ++++|+++..|+...  ..                  
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~--------~~~~G~v~~~dl~~~--~~------------------   54 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG--------GKLLGIVTSRDIDFL--TD------------------   54 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC--------CEEEEEEEhHHhhhh--hc------------------
Confidence            5678999999999999999999999999997   5        899999999998521  00                  


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecC--CCCHHHHHHHHhhcCCcEeEE
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQK--SNSFLTMLLLLSKYKMKSIPV  219 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~--~~~l~~~l~~l~~~~~~~ipV  219 (426)
                                                         ...++.++|..    ....+..  ++++.+++..|.+++.+.+||
T Consensus        55 -----------------------------------~~~~v~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~pV   95 (114)
T cd04602          55 -----------------------------------SETPLSEVMTP----REVLVVAPTGITLEEANEILRESKKGKLPI   95 (114)
T ss_pred             -----------------------------------cCCCHHHhcCC----CceEEECCCCCCHHHHHHHHHhcCCCceeE
Confidence                                               01246677765    5556655  999999999999999999999


Q ss_pred             EeCCCCeEEEEEeHHHHHH
Q 014353          220 VDLGEGTIDNIITQSSVIH  238 (426)
Q Consensus       220 vd~~~~~l~Giis~~Dl~~  238 (426)
                      ++ ++++++|++|..|+++
T Consensus        96 v~-~~~~~~Gvit~~di~~  113 (114)
T cd04602          96 VN-DDGELVALVTRSDLKK  113 (114)
T ss_pred             EC-CCCeEEEEEEHHHhhc
Confidence            98 4789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.23  E-value=1.8e-10  Score=92.71  Aligned_cols=109  Identities=24%  Similarity=0.358  Sum_probs=88.5

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.+++++.+++..|.+++.+++||++ + ++++|+++..|+.+.+......      ...++.+    +|... +.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~~~-~~   68 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD-D-GRVVGSIDESDLLDALIEGKAK------FSLPVRE----VMGEP-LP   68 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee-C-CeeEEEEeHHHHHHHHhccccc------cCcCHHH----HhcCC-Cc
Confidence            567889999999999999999999999999 4 8999999999999877533111      0234555    56554 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL  316 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  316 (426)
                      ++.+++++.+++++|.+ . ..+||+++++ +++|+|+.+|++++
T Consensus        69 ~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~-~~~Gvvt~~di~~~  110 (110)
T cd04609          69 TVDPDAPIEELSELLDR-G-NVAVVVDEGG-KFVGIITRADLLKY  110 (110)
T ss_pred             eeCCCCcHHHHHHHHHh-C-CceeEEecCC-eEEEEEeHHHhhcC
Confidence            99999999999999988 3 3478888887 99999999999753

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.23  E-value=6.4e-11  Score=120.28  Aligned_cols=115  Identities=19%  Similarity=0.282  Sum_probs=95.1

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRK  340 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~  340 (426)
                      .|..+ ++++++++++.+++++|.+++++.+||+|++   + +++|+|+.+|+...- ..              ..++.+
T Consensus       101 g~i~d-pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g-kLvGIVt~~DL~~~~-~~--------------~~~V~d  163 (495)
T PTZ00314        101 GFIMD-PYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG-KLLGIVTSRDIDFVK-DK--------------STPVSE  163 (495)
T ss_pred             ccccC-CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC-eEEEEEEHHHHhhcc-cC--------------CCCHHH
Confidence            44444 8999999999999999999999999999974   5 999999999997431 10              112444


Q ss_pred             HhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          341 YMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                      +|..        ..+++++++++++.+++++|.+++++.+||+|++++++|+||++||++...
T Consensus       164 iMt~--------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        164 VMTP--------REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             hhCC--------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            4421        016899999999999999999999999999999999999999999998864

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.21  E-value=2.5e-10  Score=91.19  Aligned_cols=102  Identities=26%  Similarity=0.424  Sum_probs=87.9

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++..+.+++++.++++.|.+++.+.+||+|  +++++|+++..|+.....            ..++.+    +|.+. +.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~~------------~~~~~~----~~~~~-~~   62 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAHP------------NRLVAD----AMTRE-VV   62 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhcccc------------cCCHHH----HccCC-CE
Confidence            456789999999999999888989999998  489999999999876321            234555    66654 89


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ  314 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~  314 (426)
                      ++.+++++.++++.|.+++...+||+|+ + +++|+||..|++
T Consensus        63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~~l~  103 (105)
T cd04599          63 TISPEASLLEAKRLMEEKKIERLPVLRE-R-KLVGIITKGTIA  103 (105)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEeeEEEC-C-EEEEEEEHHHhc
Confidence            9999999999999999999999999997 7 999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.21  E-value=1.6e-10  Score=117.38  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=99.0

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      |.++++++++++++.+|+++|.++++..+||+|+....     ++++|+||..|+...  .                   
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~-----GklvGIVT~~DL~~v--~-------------------  159 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMG-----SKLLGYVTKRDWDFV--N-------------------  159 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcC-----CeEEEEEEHHHHhhc--c-------------------
Confidence            67899999999999999999999999999999973000     799999999999521  0                   


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD  221 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd  221 (426)
                                                        ....++.++|.+.  .+++++.+++++.++++.|.+++++.+||+|
T Consensus       160 ----------------------------------~~~~~V~eIMt~~--~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD  203 (505)
T PLN02274        160 ----------------------------------DRETKLSEVMTSD--DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN  203 (505)
T ss_pred             ----------------------------------ccCCcHHHHhccC--CCcEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence                                              1134688899750  1278999999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHHHHHHH
Q 014353          222 LGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       222 ~~~~~l~Giis~~Dl~~~l~  241 (426)
                       ++++++|+||..|+++.+.
T Consensus       204 -~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        204 -EDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             -CCCeEEEEEEHHHHHHHhh
Confidence             4789999999999999885

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.20  E-value=4.7e-10  Score=91.46  Aligned_cols=108  Identities=34%  Similarity=0.538  Sum_probs=93.4

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      .+.++.++.++.+++..|.++++..+||++  .++++|++|..|+..++.......       .++.+    +|+.. ++
T Consensus         8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~--~~~l~Giit~~di~~~~~~~~~~~-------~~v~~----v~~~~-~~   73 (117)
T COG0517           8 DVITVKPDTSVRDALLLMSENGVSAVPVVD--DGKLVGIITERDILRALAAGGKRL-------LPVKE----VMTKP-VV   73 (117)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHhccCCcc-------ccHHH----hccCC-cE
Confidence            778999999999999999999999999998  458999999999999986543211       14555    77754 89


Q ss_pred             EeCCCCcHHHHHHHHHh-cCCCeeEEEeCC-CCeEEEEEeHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRR-KKIGGIPVVEKG-GNKAVGNISLRDIQ  314 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~-~~~~~lpVvd~~-~~~lvGiIs~~Dl~  314 (426)
                      ++.+++++.++++.|.+ ++++.+||+|++ + +++|++|.+|++
T Consensus        74 ~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~-~lvGivt~~di~  117 (117)
T COG0517          74 TVDPDTPLEEALELMVERHKIRRLPVVDDDGG-KLVGIITLSDIL  117 (117)
T ss_pred             EECCCCCHHHHHHHHHHHcCcCeEEEEECCCC-eEEEEEEHHHcC
Confidence            99999999999999999 799999999987 4 899999999973

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.20  E-value=2.1e-10  Score=92.38  Aligned_cols=107  Identities=29%  Similarity=0.440  Sum_probs=88.6

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++++++++++.+|++.|.+++...+||+|++        |+++|+++..++...    ..                  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~----~~------------------   51 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD--------GKLVGIVTNRDLRFE----TD------------------   51 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC--------CEEEEEEEhhHeeec----cc------------------
Confidence            467899999999999999999999999999988        899999999998521    00                  


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecC-CCCHHHHHHHHhhcCCcEeEEEeC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQK-SNSFLTMLLLLSKYKMKSIPVVDL  222 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~-~~~l~~~l~~l~~~~~~~ipVvd~  222 (426)
                                                       ...++.++|..    .+..+.+ ++++.+++..|.+++.+.+||++ 
T Consensus        52 ---------------------------------~~~~v~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-   93 (110)
T cd04601          52 ---------------------------------LDKPVSEVMTP----ENLLTTVEGTSLEEALELLHEHKIEKLPVVD-   93 (110)
T ss_pred             ---------------------------------CCCCHHHhccc----CceEEecCCCCHHHHHHHHHHhCCCeeeEEc-
Confidence                                             12246677754    4555566 99999999999999999999999 


Q ss_pred             CCCeEEEEEeHHHHHH
Q 014353          223 GEGTIDNIITQSSVIH  238 (426)
Q Consensus       223 ~~~~l~Giis~~Dl~~  238 (426)
                      ++++++|+++..|+++
T Consensus        94 ~~~~~~Gvi~~~dil~  109 (110)
T cd04601          94 DEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCCEEEEEEhhhhhc
Confidence            4789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.19  E-value=3.9e-10  Score=90.24  Aligned_cols=100  Identities=18%  Similarity=0.230  Sum_probs=85.8

Q ss_pred             EEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEe
Q 014353          194 LALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKV  273 (426)
Q Consensus       194 ~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v  273 (426)
                      +++.++.++.+++..|.+.+...+||+| + ++++|+++..|+.....             .++.+    +|... +.++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~~-------------~~~~~----~~~~~-~~~v   63 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD-Y-NKFLGAVYLKDIENATY-------------GDVVD----YIVRG-IPYV   63 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE-C-CEEEEEEEHHHHhhhcc-------------cchhh----hhhcC-CcEE
Confidence            4678999999999999999999999999 4 99999999999875321             23444    56654 8899


Q ss_pred             CCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          274 YEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       274 ~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      .+++++.++++.|.+++...+||+|+ | +++|+||.+|++.
T Consensus        64 ~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~iGvit~~dl~~  103 (104)
T cd04594          64 RLTSTAEEAWEVMMKNKTRWCPVVDD-G-KFKGIVTLDSILD  103 (104)
T ss_pred             cCCCCHHHHHHHHHHcCcceEEEEEC-C-EEEEEEEHHHhhc
Confidence            99999999999999999999999984 6 9999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.19  E-value=1.6e-10  Score=117.66  Aligned_cols=122  Identities=25%  Similarity=0.339  Sum_probs=96.2

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA  331 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~  331 (426)
                      +...++.+    +|.++ +.++.+++++.++++.|.+++++.+||+|+++ +++|+|+.+|+.+.+......        
T Consensus       332 l~~~~v~~----im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~--------  397 (454)
T TIGR01137       332 LKNATVKD----LHLPA-PVTVHPTETVGDAIEILREYGFDQLPVVTEAG-KVLGSVTLRELLSALFAGKAN--------  397 (454)
T ss_pred             hccCCHHH----hCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhccCCC--------
Confidence            44455666    78765 99999999999999999999999999999887 999999999999865432110        


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                        ...++.++|          ..++.++++++++.+++++|.+++   .+||+++|+++|+||++||++++
T Consensus       398 --~~~~v~~im----------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       398 --PDDAVSKVM----------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --cCCCHHHhc----------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence              011344444          337889999999999999998864   35555579999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.4e-10  Score=102.18  Aligned_cols=166  Identities=13%  Similarity=0.300  Sum_probs=128.3

Q ss_pred             CCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-CCeeEeCCCCc
Q 014353          200 NSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-NHIVKVYEDEP  278 (426)
Q Consensus       200 ~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~~~~~v~~~~~  278 (426)
                      .+..+++.++.+...+-  ++|.++         .+.+.....         +....+++    +|-+ ++++++..+.+
T Consensus        32 knr~eLl~liRdse~n~--LiD~dt---------~~mlEGvm~---------iadl~vrD----iMIPRSQM~~l~~~~~   87 (293)
T COG4535          32 KNREELLELIRDSEQNE--LIDADT---------LDMLEGVMD---------IADLRVRD----IMIPRSQMITLKRNQT   87 (293)
T ss_pred             cCHHHHHHHHHHhhhcc--ccChhH---------HHHHHHHHH---------HHHhhHhh----hcccHHHheeccccCC
Confidence            36788888887655443  344211         122222211         12345666    6766 56899999999


Q ss_pred             HHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCcee
Q 014353          279 VLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVT  358 (426)
Q Consensus       279 v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  358 (426)
                      +.+++..+.+..++++||+.++.+.+.|++-.+||++++..+....            .+.+++           ++.+.
T Consensus        88 l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F------------~i~~lL-----------RPav~  144 (293)
T COG4535          88 LDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPF------------DIKELL-----------RPAVV  144 (293)
T ss_pred             HHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccc------------cHHHhc-----------cccee
Confidence            9999999999999999999987779999999999999876553211            122222           27899


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcccc
Q 014353          359 CSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGD  412 (426)
Q Consensus       359 v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~~~  412 (426)
                      |+++-.+.-.++-|..++.|...|||+.|.+.|.||..|||..+++.+...++.
T Consensus       145 VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~De  198 (293)
T COG4535         145 VPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDE  198 (293)
T ss_pred             cccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccch
Confidence            999999999999999999999999999999999999999999999999987754

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.18  E-value=1.7e-10  Score=93.10  Aligned_cols=102  Identities=22%  Similarity=0.355  Sum_probs=85.1

Q ss_pred             ecCCCCHHHHHHHHhhcC-----CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353          196 LQKSNSFLTMLLLLSKYK-----MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI  270 (426)
Q Consensus       196 v~~~~~l~~~l~~l~~~~-----~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~  270 (426)
                      +.+++++.++++.|.+++     +..+||+| ++++++|+++..+++..-            ...++.+    +|.+. +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd-~~~~~~G~v~~~~l~~~~------------~~~~v~~----~~~~~-~   63 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVD-EEGRLLGVVSLRDLLLAD------------PDTPVSD----IMDTD-V   63 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEEC-CCCCEEEEEEHHHHhcCC------------CcchHHH----HhCCC-C
Confidence            467889999999998766     46789998 478999999999987520            0234666    66654 8


Q ss_pred             eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353          271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL  316 (426)
Q Consensus       271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  316 (426)
                      .++.+++++.++++.|.+.+.+.+||+|+++ +++|+|+..|++++
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dll~~  108 (109)
T cd04606          64 ISVSADDDQEEVARLFEKYDLLALPVVDEEG-RLVGIITVDDVIDV  108 (109)
T ss_pred             eEEcCCCCHHHHHHHHHHcCCceeeeECCCC-cEEEEEEhHHhhhh
Confidence            9999999999999999999999999999877 99999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=5.6e-10  Score=89.59  Aligned_cols=111  Identities=25%  Similarity=0.395  Sum_probs=91.6

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++.+++++.++++.|.+++.+.+||++. +++++|+++..|++..+.......      ...+.+    +|..+ +.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~----~~~~~-~~   69 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDP------LVTVGD----VMTRD-VV   69 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCCc------cccHHH----HhcCC-ce
Confidence            4567889999999999999989999999994 689999999999998875432211      011333    45544 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+.+.+.+||+|+++ +++|+++..|+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~  112 (113)
T cd02205          70 TVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRSDILR  112 (113)
T ss_pred             ecCCCcCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHhhc
Confidence            899999999999999999999999999987 9999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.18  E-value=2.1e-10  Score=116.41  Aligned_cols=123  Identities=20%  Similarity=0.250  Sum_probs=99.8

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      +|.++|...-. ...++.+++++.+++..|.++++..+||+|..  +++++|+||..|+....          .....++
T Consensus        95 kVk~~~~g~i~-~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~----------~~~~~~V  163 (502)
T PRK07107         95 RVKNYKAGFVV-SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR----------MSLDTKV  163 (502)
T ss_pred             HHHHHhcCCcC-CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc----------cCCCCCH
Confidence            46666643212 23589999999999999999999999999932  58999999999985321          0124567


Q ss_pred             cccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          258 SEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       258 ~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .+    +|++ .+++++.+++++.+|+++|.+++++.+||+|+++ +++|+||.+|+++...
T Consensus       164 ~d----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g-~LvGIIT~~Dilk~~~  220 (502)
T PRK07107        164 KD----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNG-NLVYLVFRKDYDSHKE  220 (502)
T ss_pred             HH----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEhHHHHhccc
Confidence            77    8885 3489999999999999999999999999999888 9999999999998753

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.17  E-value=1.4e-10  Score=107.82  Aligned_cols=121  Identities=21%  Similarity=0.274  Sum_probs=106.2

Q ss_pred             cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccc
Q 014353          179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLS  258 (426)
Q Consensus       179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~  258 (426)
                      ..|.++|.+..  ....+.+++++.+-..+-.+.+..++||+|. ..+++|++|.+|+.....            +.++.
T Consensus       188 ~~Vedi~~P~~--~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~~------------~t~ie  252 (432)
T COG4109         188 ITVEDIMTPLE--DTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKKP------------STTIE  252 (432)
T ss_pred             eeHHHhccccc--cceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCCC------------CccHH
Confidence            46889998532  5677889999999999999999999999994 899999999999865432            45677


Q ss_pred             ccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       259 ~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                      .    +|+++ ++++.+.+++..+.++|.-+++.-+||+|++. +++|+||++|+++.+...
T Consensus       253 K----VMtkn-p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~-~llGiitR~dvlk~lq~~  308 (432)
T COG4109         253 K----VMTKN-PITVRAKTSVASVAQMMIWEGIEMLPVVDSNN-TLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             H----HhccC-CeeecccchHHHHHHHHHhccceeeeEEcCCc-eEEEEEEHHHHHHHHHHh
Confidence            7    89986 99999999999999999999999999999998 999999999999998643

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.17  E-value=3.1e-10  Score=115.54  Aligned_cols=126  Identities=15%  Similarity=0.284  Sum_probs=104.7

Q ss_pred             HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353           47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP  126 (426)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~  126 (426)
                      +.+.+..+++.++  |.++++++.+++++.+|++.|.++++..+||+|++        ++++|+|+..|+.+.+..... 
T Consensus       328 ~~~~l~~~~v~~i--m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~~-  396 (454)
T TIGR01137       328 VFDVLKNATVKDL--HLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA--------GKVLGSVTLRELLSALFAGKA-  396 (454)
T ss_pred             HHHHhccCCHHHh--CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEHHHHHHHHhccCC-
Confidence            6667889999998  88999999999999999999999999999999987        899999999999876543110 


Q ss_pred             CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHH
Q 014353          127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTML  206 (426)
Q Consensus       127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l  206 (426)
                                                                       ....++.++|..    ++.++.+++++.+++
T Consensus       397 -------------------------------------------------~~~~~v~~im~~----~~~~v~~~~~l~~a~  423 (454)
T TIGR01137       397 -------------------------------------------------NPDDAVSKVMSK----KFIQIGEGEKLSDLS  423 (454)
T ss_pred             -------------------------------------------------CcCCCHHHhcCC----CCeEECCcCcHHHHH
Confidence                                                             112357788876    788999999999999


Q ss_pred             HHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHH
Q 014353          207 LLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHML  240 (426)
Q Consensus       207 ~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l  240 (426)
                      ..|.+++   .+|++ ++++++|+||..|+++++
T Consensus       424 ~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       424 KFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             HHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence            9998753   34555 268999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.17  E-value=4.8e-10  Score=89.89  Aligned_cols=104  Identities=23%  Similarity=0.395  Sum_probs=88.8

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV  271 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~  271 (426)
                      ++.++..+.++.+++..|.+.+...+||+| + ++++|+++..|++..-     .       ..++.+    +|... +.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~-~~~~g~v~~~~l~~~~-----~-------~~~~~~----~~~~~-~~   63 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD-N-GKVVGIVSARDLLGKD-----P-------DETVEE----IMSKD-LV   63 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhccC-----c-------cccHHH----hCCCC-Ce
Confidence            567789999999999999888888999999 4 8999999999987520     0       234666    66654 88


Q ss_pred             EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      ++.+++++.++++.|.+++.+.+||+|++| +++|+|+..|+++
T Consensus        64 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvi~~~di~~  106 (107)
T cd04610          64 VAVPEMDIMDAARVMFRTGISKLPVVDENN-NLVGIITNTDVIR  106 (107)
T ss_pred             EECCCCCHHHHHHHHHHhCCCeEeEECCCC-eEEEEEEHHHhhc
Confidence            999999999999999999999999999888 9999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.16  E-value=2.3e-10  Score=113.53  Aligned_cols=124  Identities=27%  Similarity=0.397  Sum_probs=106.7

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHh-----cCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRR-----KKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY  326 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~-----~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~  326 (426)
                      +...+++.    +|+.+ .+++.++.|+.+++..+++     ..+..+.|+|.++ +++|++|.++++..          
T Consensus       129 y~e~taG~----~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~-~L~Gvvsl~~Ll~a----------  192 (451)
T COG2239         129 YPEDTAGR----IMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKG-KLLGVVSLRDLLTA----------  192 (451)
T ss_pred             CChhhhhc----cceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECCcc-ceEEEeeHHHHhcC----------
Confidence            44566666    89886 9999999999999999985     4468999999998 99999999999866          


Q ss_pred             ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          327 RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       327 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                            +....+.++|..          .++++.+++..+++.+.|.+++.-.+||||++++++|+||..|++..+-.+.
T Consensus       193 ------~~~~~i~~im~~----------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa  256 (451)
T COG2239         193 ------EPDELLKDLMED----------DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA  256 (451)
T ss_pred             ------CcHhHHHHHhcc----------cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence                  123456666655          7999999999999999999999999999999999999999999999996554


Q ss_pred             C
Q 014353          407 P  407 (426)
Q Consensus       407 ~  407 (426)
                      .
T Consensus       257 ~  257 (451)
T COG2239         257 T  257 (451)
T ss_pred             H
Confidence            4

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.16  E-value=3e-10  Score=107.38  Aligned_cols=113  Identities=22%  Similarity=0.337  Sum_probs=96.8

Q ss_pred             cchhhhccccccCC-cEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          179 TKVRDIAGSFRWAP-FLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       179 ~~v~~i~~~~~~~~-~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      .+++++|..    + +.++.+++++.++++.|.+.+.+++||+| ++++++|+++..|+.+.+.....       ...++
T Consensus       155 ~~v~~im~~----~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd-~~g~~~Givt~~dl~~~~~~~~~-------~~~~v  222 (268)
T TIGR00393       155 VKVKDLMQT----TDLPLIAPTTSFKDALLEMSEKRLGSAIVCD-ENNQLVGVFTDGDLRRALLGGGS-------LKSEV  222 (268)
T ss_pred             hhHHHHhCC----CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe-CCCCEEEEEEcHHHHHHHhcCCc-------ccCcH
Confidence            578999986    6 88899999999999999988999999999 47999999999999886542211       13567


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEe
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNIS  309 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs  309 (426)
                      .+    +|.+. +.++.+++++.++++.|.+.+...+||+|++| +++|+|+
T Consensus       223 ~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~l~GvI~  268 (268)
T TIGR00393       223 RD----FMTLG-PKTFKLDALLLEALEFLERRKITSLVVVDDHN-KVLGVLH  268 (268)
T ss_pred             HH----hCCCC-CeEECCCCcHHHHHHHHHHcCCcEEEEECCCC-eEEEEEC
Confidence            77    77764 88999999999999999999999999999888 9999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.15  E-value=7.2e-10  Score=89.07  Aligned_cols=99  Identities=20%  Similarity=0.317  Sum_probs=86.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeec---CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDV---DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~---~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      .+..+++++++.++.+.|.+++...+||+|+   +        ++++|+|+..|+.+....                   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~--------~~~~G~v~~~dl~~~~~~-------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES--------PRLVGYILRSQLVVALKN-------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC--------CEEEEEEeHHHHHHHHHH-------------------
Confidence            5788999999999999999999999999998   5        899999999999754211                   


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD  221 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd  221 (426)
                                                                +|..    ++.++.+++++.+++..|.+++.+.+||++
T Consensus        56 ------------------------------------------~m~~----~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~   89 (105)
T cd04591          56 ------------------------------------------YIDP----SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD   89 (105)
T ss_pred             ------------------------------------------hccC----CCceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence                                                      3433    677899999999999999999999999996


Q ss_pred             CCCCeEEEEEeHHHHHH
Q 014353          222 LGEGTIDNIITQSSVIH  238 (426)
Q Consensus       222 ~~~~~l~Giis~~Dl~~  238 (426)
                        +++++|+++..|+++
T Consensus        90 --~~~~~Gvvt~~dl~~  104 (105)
T cd04591          90 --EGRLVGIITRKDLLK  104 (105)
T ss_pred             --CCeEEEEEEhhhhhc
Confidence              689999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.14  E-value=4.6e-10  Score=94.36  Aligned_cols=116  Identities=19%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc-HHHHHHHHHHHhhhcCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT-AKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~  348 (426)
                      +.++.+++++.++++.|.+.+++.+||+|++| +++|+++..|+++++............. ...-...+.+++.. ..+
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g-~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~   80 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSDD-FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTK-GIS   80 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhh-hhh
Confidence            78999999999999999999999999999988 9999999999999875432211000000 00001112233321 011


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG  387 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~  387 (426)
                      .+.|..++.++++++++.+|++.|.+++++++||+|+.+
T Consensus        81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence            223445789999999999999999999999999998653

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.12  E-value=6.5e-10  Score=112.22  Aligned_cols=117  Identities=26%  Similarity=0.388  Sum_probs=99.4

Q ss_pred             hhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC---CeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          181 VRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE---GTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       181 v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~---~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      ..+.|..    ++.++.++.++.++++.|.+++++++||+|. +   ++++|+++..|+.....           ...++
T Consensus        82 ~~~~~~~----~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-~~~~~~lvGIVt~rDL~~~~~-----------~~~~V  145 (450)
T TIGR01302        82 AENGIIS----DPVTISPETTVADVLELMERKGISGIPVVED-GDMTGKLVGIITKRDIRFVKD-----------KGKPV  145 (450)
T ss_pred             ccCceec----CceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-CCCCCeEEEEEEHHHHhhhhc-----------CCCCH
Confidence            4455554    7789999999999999999999999999994 5   79999999999864321           13467


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .+    +|++.+++++.+++++.++++.|.+++.+.+||+|++| +++|+||.+||++...
T Consensus       146 ~d----vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G-~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       146 SE----VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKDIVKRRK  201 (450)
T ss_pred             HH----hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEhHHhhhccc
Confidence            77    77732499999999999999999999999999999988 9999999999998864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=2.2e-09  Score=91.41  Aligned_cols=115  Identities=28%  Similarity=0.455  Sum_probs=91.5

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccC-cch----------------------
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAG-LEW----------------------  248 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~-~~~----------------------  248 (426)
                      +++++.+++++.++++.|.+++++.+||+| + ++++|+++..|+...+..... ...                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLD-G-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeE-C-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            567889999999999999999999999999 4 899999999999887743221 000                      


Q ss_pred             ---hhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353          249 ---FESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       249 ---~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                         .......++.+    +|... +.++..++++.++++.|.+.+.+.+||+++ + +++|+++.+|++.
T Consensus        80 ~~~~~~~~~~~v~~----~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRD----IMTKK-VITISPDASIEDAAELMVRHKIKRLPVVED-G-RLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHH----HcCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence               00011233444    56654 899999999999999999999999999998 7 9999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.08  E-value=3.8e-09  Score=107.41  Aligned_cols=111  Identities=20%  Similarity=0.275  Sum_probs=95.3

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-C
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-N  268 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~  268 (426)
                      .++++.+++++.+++.+|.+++++.+||+|.+  +++++|+++..|+... ..          ...++.+    +|++ +
T Consensus       105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-~~----------~~~~V~d----iMt~~~  169 (495)
T PTZ00314        105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-KD----------KSTPVSE----VMTPRE  169 (495)
T ss_pred             CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-cc----------CCCCHHH----hhCCcC
Confidence            66799999999999999999999999999842  3799999999998621 11          1356777    7875 2


Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      +++++.+++++.+++++|.++++..+||+|+++ +++|+||++||++...
T Consensus       170 ~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        170 KLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALVSRSDLKKNRG  218 (495)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEehHhhhccc
Confidence            489999999999999999999999999999988 9999999999998854

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=3.2e-09  Score=85.10  Aligned_cols=104  Identities=16%  Similarity=0.325  Sum_probs=87.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++.++.++.+|+..|.++++..+||+|++        ++++|+++..++...    ..                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~v~~~~l~~~----~~-------------------   50 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS--------GELVGIITRKDLLRN----PE-------------------   50 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhc----cc-------------------
Confidence            57899999999999999999999999999988        899999999999631    00                   


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE  224 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~  224 (426)
                                                       ...+.++|..    +..++.+++++.+++..|.+++.+.+||+|  +
T Consensus        51 ---------------------------------~~~~~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~   91 (106)
T cd04638          51 ---------------------------------EEQLALLMTR----DPPTVSPDDDVKEAAKLMVENNIRRVPVVD--D   91 (106)
T ss_pred             ---------------------------------cchHHHHhcC----CCceECCCCCHHHHHHHHHHcCCCEEEEEE--C
Confidence                                             0124455554    677889999999999999999999999999  3


Q ss_pred             CeEEEEEeHHHHHH
Q 014353          225 GTIDNIITQSSVIH  238 (426)
Q Consensus       225 ~~l~Giis~~Dl~~  238 (426)
                      ++++|+++..|+++
T Consensus        92 ~~~~G~it~~d~~~  105 (106)
T cd04638          92 GKLVGIVTVADIVR  105 (106)
T ss_pred             CEEEEEEEHHHhhc
Confidence            69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.06  E-value=3.2e-09  Score=86.86  Aligned_cols=113  Identities=20%  Similarity=0.321  Sum_probs=88.7

Q ss_pred             CcEEecCCCCHHHHHHHHhhcC-CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353          192 PFLALQKSNSFLTMLLLLSKYK-MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI  270 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~-~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~  270 (426)
                      ++.++.+++++.+++..|...+ .+.+||+| + ++++|+++..|+...+.......   .+...++.+    +|... +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd-~-~~~~G~v~~~~l~~~~~~~~~~~---~~~~~~v~~----~~~~~-~   71 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD-D-GRPVGLIMREALMELLSTPYGRA---LYGKKPVSE----VMDPD-P   71 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE-C-CeeEEEEEHHHHHHHHhchhhHH---HHcCCcHHH----hcCCC-c
Confidence            4557889999999999998776 88999999 4 99999999999987654311100   012345666    67764 8


Q ss_pred             eEeCCCCcHHHHHHHHHhcCCC---eeEEEeCCCCeEEEEEeHHHHHH
Q 014353          271 VKVYEDEPVLQAFKLMRRKKIG---GIPVVEKGGNKAVGNISLRDIQF  315 (426)
Q Consensus       271 ~~v~~~~~v~~a~~~m~~~~~~---~lpVvd~~~~~lvGiIs~~Dl~~  315 (426)
                      .++.+++++.++++.|.+++..   ..+|++++| +++|+||..|+++
T Consensus        72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~-~~~Gvvs~~di~~  118 (119)
T cd04598          72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG-RYLGIGTVKDLLR  118 (119)
T ss_pred             EEecCCCCHHHHHHHHHcCCcccccccEEEeeCC-eEEEEEEHHHHhc
Confidence            9999999999999999988753   446888877 9999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.04  E-value=2.1e-09  Score=90.42  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=79.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG  144 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g  144 (426)
                      +++++.+++++.+|++.|.++++.++||+|++        ++++|+|+..|+++++........               .
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~--------g~l~Givt~~Dl~~~~~~~~~~~~---------------~   58 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD--------DFLEGILTLGDIQRFLFTNKTTRV---------------Q   58 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHHHHHHhhcccccc---------------c
Confidence            56899999999999999999999999999998        899999999999987653211000               0


Q ss_pred             CccccccccCCCCcccccccchhhcccccccccccchhhhc---------cccccCCcEEecCCCCHHHHHHHHhhcCCc
Q 014353          145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIA---------GSFRWAPFLALQKSNSFLTMLLLLSKYKMK  215 (426)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~---------~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~  215 (426)
                               ..    .    ..+       ......+.++|         ..    +++++.+++++.+++..|.+++++
T Consensus        59 ---------~~----~----~~~-------~~~~~~v~~i~~~~~~~~~~~~----~~~~v~~~~~l~ea~~~m~~~~~~  110 (133)
T cd04592          59 ---------PE----D----ETK-------QTNTCLVSSVCTKGISYGGQEC----GLWTCTPDTDLTTAKKLMEAKGVK  110 (133)
T ss_pred             ---------cc----h----hhc-------ccccccHHHHhhhhhhhcccCC----CCEEECCCCCHHHHHHHHHHcCCC
Confidence                     00    0    000       00011122333         33    788999999999999999999999


Q ss_pred             EeEEEeCC
Q 014353          216 SIPVVDLG  223 (426)
Q Consensus       216 ~ipVvd~~  223 (426)
                      ++||+|..
T Consensus       111 ~lPVvd~~  118 (133)
T cd04592         111 QLPVVKRG  118 (133)
T ss_pred             cCCEecCC
Confidence            99999843

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.02  E-value=5.3e-10  Score=79.15  Aligned_cols=54  Identities=26%  Similarity=0.478  Sum_probs=50.6

Q ss_pred             CCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          351 PLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       351 ~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                      +|.+++.++++++++.++++.|.+++++++||+|++|+++|+||.+||++++.+
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhhC
Confidence            456699999999999999999999999999999999999999999999999863

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK11573 hypothetical protein; Provisional

Probab=98.98  E-value=7.7e-09  Score=103.18  Aligned_cols=192  Identities=15%  Similarity=0.157  Sum_probs=138.8

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      .+.+.+++++|.+.  ..+..++.++++.++++.+.+++++++||.+.+.++++|++..+|++..+.......      .
T Consensus       183 ~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~------~  254 (413)
T PRK11573        183 DLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFT------K  254 (413)
T ss_pred             ccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCC------H
Confidence            46778999999863  378899999999999999999999999999865689999999999987654221110      1


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      ..+.+    +++  ++.+++++.++.++++.|.+++.+-..|+|+.| ...|+||..||+..+.- +..+......    
T Consensus       255 ~~l~~----~~r--~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG-~~~GiVTleDilEeivG-ei~de~d~~~----  322 (413)
T PRK11573        255 ENMLR----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVG-DFTTSMSPTL----  322 (413)
T ss_pred             HHHHh----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC-CeEEEeeHHHHHHHHhC-CCCcccCccc----
Confidence            12223    444  389999999999999999999999999999988 89999999999998752 2222110000    


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                         -..+..        .....+.++...++.++-+.+--   . +|   ++    ..=|...++-..++++|.
T Consensus       323 ---~~~i~~--------~~~~~~~v~G~~~l~d~~~~l~~---~-l~---~~----~~~Tl~G~i~~~lg~iP~  374 (413)
T PRK11573        323 ---AEEVTP--------QNDGSVIIDGTANVREINKAFNW---H-LP---ED----DARTVNGVILEALEEIPV  374 (413)
T ss_pred             ---ccceEE--------ecCCEEEEEeeeEHHHHHHHhCC---C-CC---CC----CCeeHHHHHHHHhCcCCC
Confidence               000000        01245788888999998888733   1 22   11    345777787777777765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.91  E-value=4.3e-08  Score=96.04  Aligned_cols=111  Identities=20%  Similarity=0.324  Sum_probs=92.6

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      .....++.+..++++.|...+...+.|+|+++ ++.|.++.+++..+.....               .+.+.        
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---------------~~~~~--------  307 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQN-KLVGVVDVESIKQARKKAQ---------------GLQDV--------  307 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeHHHHHHHhhcCC---------------chhhh--------
Confidence            34566777899999999999999999999988 9999999999987754321               12222        


Q ss_pred             CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                        +...+.++.++++|.+++..|.+++.. +||+|++|+++|+||..++++.+.+.-.
T Consensus       308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~~~  362 (363)
T TIGR01186       308 --LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDSRE  362 (363)
T ss_pred             --hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhhcc
Confidence              223677999999999999999999998 9999999999999999999999987643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.85  E-value=7.1e-09  Score=73.30  Aligned_cols=52  Identities=33%  Similarity=0.495  Sum_probs=49.5

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHH
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWIL  121 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~  121 (426)
                      |.++++++++++++.+|++.|.++++..+||+|++        ++++|++|..||+++++
T Consensus         5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED--------GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT--------SBEEEEEEHHHHHHHHH
T ss_pred             CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--------CEEEEEEEHHHHHhhhh
Confidence            67799999999999999999999999999999998        99999999999998865

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.81  E-value=3.4e-08  Score=98.28  Aligned_cols=128  Identities=18%  Similarity=0.308  Sum_probs=111.4

Q ss_pred             HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHH-----CCcccceeeecCCCCCcccccceEEEeehHHHHHHH
Q 014353           46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQ-----HRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWI  120 (426)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~-----~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l  120 (426)
                      ++++..+.-+-++-..|+.+.+++.++.|+.+|+..+++     ..+..+.|+|.+        ++++|+++.++++.. 
T Consensus       122 ~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~--------~~L~Gvvsl~~Ll~a-  192 (451)
T COG2239         122 RVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK--------GKLLGVVSLRDLLTA-  192 (451)
T ss_pred             HHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc--------cceEEEeeHHHHhcC-
Confidence            477777777777666699999999999999999999994     567899999998        899999999999621 


Q ss_pred             HhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCC
Q 014353          121 LHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSN  200 (426)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~  200 (426)
                                                                             .+..+++++|..    .++.+.+++
T Consensus       193 -------------------------------------------------------~~~~~i~~im~~----~~~~V~~~~  213 (451)
T COG2239         193 -------------------------------------------------------EPDELLKDLMED----DVVSVLADD  213 (451)
T ss_pred             -------------------------------------------------------CcHhHHHHHhcc----cceeecccC
Confidence                                                                   123468899987    789999999


Q ss_pred             CHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          201 SFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       201 ~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      +.+++...+.++++-++||+| ++++++|++|..|++..+.+
T Consensus       214 dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         214 DQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             CHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHHHH
Confidence            999999999999999999999 58999999999999998854

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=1.2e-07  Score=94.06  Aligned_cols=106  Identities=20%  Similarity=0.254  Sum_probs=88.6

Q ss_pred             eCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCC
Q 014353          273 VYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPL  352 (426)
Q Consensus       273 v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  352 (426)
                      ..++.+..+++..|...+...++|+|+++ ++.|+++..++........               .+.+.+          
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---------------~~~~~~----------  343 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGN-KFVGAVSIDSLKTALTQQQ---------------GLDAAL----------  343 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCC-cEEEEEeHHHHHhhhhcCC---------------chhhhh----------
Confidence            44667889999999999999999999988 9999999999987643221               122222          


Q ss_pred             cCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          353 LSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       353 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      .....++.+++++.+++..|.++... +||||++|+++|+||..++++.+.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        344 IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            22678999999999999999998776 99999999999999999999999765

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.78  E-value=9.7e-08  Score=96.13  Aligned_cols=190  Identities=18%  Similarity=0.178  Sum_probs=137.9

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      .+.+.+++++|.+  +..+..++.+.++.+++..+.+++++++||++.+.+.++|++..+|++........ .       
T Consensus       202 ~l~~~~v~eiMtP--R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-------  271 (429)
T COG1253         202 DLDDRTVREIMTP--RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-------  271 (429)
T ss_pred             ccCCcEeeeEeee--cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-------
Confidence            4667899999987  33688888899999999999999999999999667899999999999998865421 0       


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      .....    ...  +++.++++.++.++++.|.+++.+-..|+|+-| .+.|+||..||+..+. ++..+......    
T Consensus       272 ~~~~~----~~~--~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG-~~~GlVTleDIiEeIv-Gei~de~d~~~----  339 (429)
T COG1253         272 LDLRV----LVR--PPLFVPETLSLSDLLEEFREERTHMAIVVDEYG-GVEGLVTLEDIIEEIV-GEIPDEHDEDE----  339 (429)
T ss_pred             cchhh----ccc--CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCC-CeEEEeEHHHHHHHHh-CCCcCcccccc----
Confidence            01111    222  489999999999999999999999999999998 8999999999999975 33332221100    


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                      ...+.          ...... +.+.....+.++.+.+-..-       ++++   .+=|..-++-...+.++
T Consensus       340 ~~~~~----------~~~~~~-~~v~G~~~l~e~~~~l~~~~-------~~~~---~~~Ti~G~v~~~lg~iP  391 (429)
T COG1253         340 EEDII----------QRDDDG-WLVDGRVPLEELEELLGIDL-------DEEE---DYDTIAGLVLSLLGRIP  391 (429)
T ss_pred             cccce----------EecCCc-EEEeccccHHHHHHHhCCCC-------cccC---CcccHHHHHHHHhCcCC
Confidence            00000          001123 77888888888887765532       2221   34566777777777766

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.54  E-value=1.8e-07  Score=89.00  Aligned_cols=109  Identities=28%  Similarity=0.371  Sum_probs=92.6

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC--CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH  346 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  346 (426)
                      +++..+++.++-++++.-..+++..+||+++.  +.+++|+||.+|+-.. .++              ..          
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------------~~----------  171 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------------SL----------  171 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------------cc----------
Confidence            37888999999999999999999999999752  2489999999999766 221              11          


Q ss_pred             CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                      .+.++|++.+++...+.+|.++-+.+.+++...+||||++|+++.+|+++||.+.-
T Consensus       172 ~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  172 LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            23345555779999999999999999999999999999999999999999998875

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.49  E-value=3.9e-07  Score=91.12  Aligned_cols=138  Identities=17%  Similarity=0.251  Sum_probs=106.1

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC----CeEEEEEeHHHHHHHhhCCccccc---c------cccc
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG----NKAVGNISLRDIQFLLTAPEIYHD---Y------RSIT  330 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~----~~lvGiIs~~Dl~~~~~~~~~~~~---~------~~~~  330 (426)
                      +|++ +++++..-+.+..+.+.+....++++||||+..    +++.|+|-++.++..+.+......   .      +...
T Consensus       587 v~~~-pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~  665 (762)
T KOG0474|consen  587 VMSK-PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFT  665 (762)
T ss_pred             hccC-CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCC
Confidence            7887 599999999999999999999999999999732    278999999999998865532211   0      1111


Q ss_pred             HHHHHH---HHHHH------hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          331 AKNFLT---AVRKY------MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       331 ~~~~~~---~v~~~------~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                      ..++..   .+.+.      ++.-.+....|++.|+++.+++++..+..+|.+-+++++.||+..++++|++|++|+...
T Consensus       666 ~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  666 FRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             HHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            122211   11111      111126667889999999999999999999999999999999999999999999999965


Q ss_pred             H
Q 014353          402 L  402 (426)
Q Consensus       402 l  402 (426)
                      =
T Consensus       746 ~  746 (762)
T KOG0474|consen  746 R  746 (762)
T ss_pred             H
Confidence            4

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.48  E-value=2.3e-06  Score=81.12  Aligned_cols=152  Identities=18%  Similarity=0.257  Sum_probs=118.0

Q ss_pred             cccccchhhhcCCC---CCh----hHHHhhhh--ccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCC
Q 014353           27 GMKVEDLWDVLEPQ---LSP----TEKLNACF--ESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDA   97 (426)
Q Consensus        27 ~~~~~~~~~~l~~~---~~~----~~~~~~~~--~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~   97 (426)
                      .+|.++|--+.+.+   +++    .+-|-..+  +.++++++-.+...+..++.|++.++.++.+...-...+|||..+.
T Consensus       164 ~~s~EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~  243 (423)
T COG4536         164 LSSKEELRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL  243 (423)
T ss_pred             ccCHHHHHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh
Confidence            45566666664332   333    13344433  4899999955588999999999999999999999999999999886


Q ss_pred             CCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccc
Q 014353           98 PEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYK  177 (426)
Q Consensus        98 ~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (426)
                             ++++||+..+|+++++.+..+                                                  +.
T Consensus       244 -------DnIiGvlh~r~llr~l~e~~~--------------------------------------------------~~  266 (423)
T COG4536         244 -------DNIIGVLHVRDLLRLLNEKNE--------------------------------------------------FT  266 (423)
T ss_pred             -------hHhhhhhhHHHHHHHhhccCc--------------------------------------------------cc
Confidence                   889999999999998765421                                                  11


Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~  241 (426)
                      ...+..+..     +++++++.+++.+.+..|.+++-|.-.|+| +-|.+.|++|..|++.-+.
T Consensus       267 k~d~~~~a~-----epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIV  324 (423)
T COG4536         267 KEDILRAAD-----EPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIV  324 (423)
T ss_pred             HhHHHHHhc-----CCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHh
Confidence            112222223     778999999999999999999999889999 4899999999999988774

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.36  E-value=1.1e-06  Score=77.91  Aligned_cols=127  Identities=17%  Similarity=0.246  Sum_probs=106.4

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      ......|+++|-+.  ...+++..+.++.+++..+++...+++||+..+...+.||+-.+||+.++.....        .
T Consensus        63 ~iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~--------~  132 (293)
T COG4535          63 DIADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE--------P  132 (293)
T ss_pred             HHHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc--------c
Confidence            35567899999641  2688999999999999999999999999998778899999999999999864422        1


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      ..+.+    +..  +.+.++++..+.-.++-++.++.+-..|+|+-| -+-|+||..|++..+.
T Consensus       133 F~i~~----lLR--Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfG-gVsGLVTIEDiLEqIV  189 (293)
T COG4535         133 FDIKE----LLR--PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFG-GVSGLVTIEDILEQIV  189 (293)
T ss_pred             ccHHH----hcc--cceecccchhHHHHHHHHHhhcCceEEEEeccC-CeeeeEEHHHHHHHHh
Confidence            23444    444  378999999999999999999999999999988 8999999999998864

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.35  E-value=7.8e-06  Score=80.25  Aligned_cols=107  Identities=16%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             EEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEe
Q 014353          194 LALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKV  273 (426)
Q Consensus       194 ~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v  273 (426)
                      ....++.+..+++..|...+...+.|+| +++++.|+++..++..++...           ..+.+    .+... +.++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~~-~~~~  315 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVD-RQNKLVGVVDVESIKQARKKA-----------QGLQD----VLIDD-IYTV  315 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeHHHHHHHhhcC-----------Cchhh----hhccC-CceE
Confidence            3456677889999999999999999999 589999999999987766432           12344    34443 7889


Q ss_pred             CCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          274 YEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       274 ~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                      .+++++.+++..|.++++. +||+|++| +++|+|+..+++..+..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       316 DAGTLLRETVRKVLKAGIK-VPVVDEDQ-RLVGIVTRGSLVDALYD  359 (363)
T ss_pred             CCCCcHHHHHHHHHhCCCC-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence            9999999999999999998 99999988 99999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.26  E-value=2.3e-06  Score=85.83  Aligned_cols=136  Identities=21%  Similarity=0.375  Sum_probs=106.1

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC----CeEEEEEeHHHHHHHHHhccCcch--
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE----GTIDNIITQSSVIHMLAECAGLEW--  248 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~----~~l~Giis~~Dl~~~l~~~~~~~~--  248 (426)
                      ...+..++++|++    |++++..-+.+..+.+.+.++.++.+||+|...    +++.|+|-++.++..+......+.  
T Consensus       578 ~mr~L~a~ev~~~----pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~  653 (762)
T KOG0474|consen  578 YMRNLTAGEVMSK----PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESR  653 (762)
T ss_pred             HhhhhhHhhhccC----CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence            4556789999998    999999999999999999999999999998433    478999999999888854321110  


Q ss_pred             ----hh--------hh--cccccccccc------------CCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCC
Q 014353          249 ----FE--------SW--GKKKLSEIGL------------PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGN  302 (426)
Q Consensus       249 ----~~--------~~--~~~~v~~~~~------------~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~  302 (426)
                          ..        .+  ...+++++.+            .+|++. ++++.+++++..++.+++.-+.+.+.||+... 
T Consensus       654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~s-PytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~-  731 (762)
T KOG0474|consen  654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPS-PYTVPETMSLAKAFILFRQLGLRHLLVVPKTN-  731 (762)
T ss_pred             cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCC-CcccCcccchHHHHHHHHHhcceeEEEecCCC-
Confidence                00        00  0111222211            167775 99999999999999999999999999999988 


Q ss_pred             eEEEEEeHHHHHHH
Q 014353          303 KAVGNISLRDIQFL  316 (426)
Q Consensus       303 ~lvGiIs~~Dl~~~  316 (426)
                      +++|++|++|+...
T Consensus       732 ~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  732 RVVGILTRKDLARY  745 (762)
T ss_pred             ceeEEEehhhhhhH
Confidence            89999999999866

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=1.1e-05  Score=80.18  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=87.5

Q ss_pred             ecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCC
Q 014353          196 LQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYE  275 (426)
Q Consensus       196 v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~  275 (426)
                      ..++.+..+++..|...+...+.|+| +++++.|+++..++.+.....           ..+.+    .+... ..++.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~~-~~~~~~  352 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIE-RGNKFVGAVSIDSLKTALTQQ-----------QGLDA----ALIDA-PLAVDA  352 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEc-CCCcEEEEEeHHHHHhhhhcC-----------Cchhh----hhccC-CceeCC
Confidence            34666889999999999999999999 489999999999987665422           12333    33443 789999


Q ss_pred             CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          276 DEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       276 ~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                      ++++.+++..+.+.... +||+|++| +++|+|+..++++.+...
T Consensus       353 ~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        353 QTPLSELLSHVGQAPCA-VPVVDEDQ-QYVGIISKGMLLRALDRE  395 (400)
T ss_pred             CCCHHHHHHHHHhCCCc-EEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence            99999999999997766 99999988 999999999999998654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.21  E-value=3.5e-06  Score=80.44  Aligned_cols=109  Identities=20%  Similarity=0.261  Sum_probs=92.5

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeC--CCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCC
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDL--GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANH  269 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~--~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~  269 (426)
                      .++...|+.++.++++....+++..+||...  -..+++|+||.+|+ .++.++          ...+.+    +|+++ 
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~~~----------~~~~~~----vmt~~-  180 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLEDN----------SLLVSD----VMTKN-  180 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhhcc----------cchhhh----hcccc-
Confidence            4567889999999999999999999999952  13689999999995 454322          345666    89887 


Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL  317 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~  317 (426)
                      .++...+.++.++-+++.+.+-..+||||+++ +++.+|++.||.+.-
T Consensus       181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g-elva~~~rtDl~k~~  227 (503)
T KOG2550|consen  181 PVTGAQGITLKEANEILKKIKKGKLPVVDDKG-ELVAMLSRTDLMKNR  227 (503)
T ss_pred             cccccccccHHHHHHHHHhhhcCCcceeccCC-ceeeeeehhhhhhhc
Confidence            58999999999999999999999999999998 999999999998763

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.03  E-value=1.7e-05  Score=52.76  Aligned_cols=47  Identities=45%  Similarity=0.644  Sum_probs=43.6

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       356 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                      +.++.+++++.++++.|..++.+.+||++++++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            46889999999999999999999999999889999999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.99  E-value=1.1e-05  Score=65.47  Aligned_cols=50  Identities=30%  Similarity=0.452  Sum_probs=45.4

Q ss_pred             CCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          351 PLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       351 ~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                      +|...+.++++++++.++++.|.+++.+.+||+|++|+++|+||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            34448899999999999999999999999999999899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.93  E-value=1.1e-05  Score=65.52  Aligned_cols=54  Identities=26%  Similarity=0.418  Sum_probs=48.6

Q ss_pred             CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHH
Q 014353           54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIA  117 (426)
Q Consensus        54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~  117 (426)
                      .+++++  |.+++.++++++++.+|++.|.+++++.+||+|++        ++++|+|+..||.
T Consensus        58 ~~v~di--m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--------~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDV--INRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD--------GTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHh--cCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHhh
Confidence            445565  67788999999999999999999999999999988        8999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.83  E-value=6e-05  Score=50.00  Aligned_cols=46  Identities=41%  Similarity=0.604  Sum_probs=42.5

Q ss_pred             eEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHH
Q 014353           66 VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVW  119 (426)
Q Consensus        66 vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~  119 (426)
                      ++++.+++++.++++.|.++++..+||++++        ++++|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE--------GRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC--------CeEEEEEEHHHHHHh
Confidence            5678999999999999999999999999987        899999999999764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.75  E-value=0.0003  Score=71.12  Aligned_cols=140  Identities=14%  Similarity=0.200  Sum_probs=96.8

Q ss_pred             cccccchhhhccccccC-CcEEecCC-CCHHHHHHHHhhcCCcEeEEE-eCCCCeEEEEEeHHHHHHHHHhccCcchhhh
Q 014353          175 FYKNTKVRDIAGSFRWA-PFLALQKS-NSFLTMLLLLSKYKMKSIPVV-DLGEGTIDNIITQSSVIHMLAECAGLEWFES  251 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~-~~~~v~~~-~~l~~~l~~l~~~~~~~ipVv-d~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~  251 (426)
                      .+..+-..++|.+.+.+ ++.....+ .++.|+..+|.+...+..||+ ++++++++|++..+++...+.+.+..+.+..
T Consensus       539 e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~  618 (696)
T KOG0475|consen  539 EFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIV  618 (696)
T ss_pred             ccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccce
Confidence            33333344566655544 35555444 589999999999888888887 5457899999999999888853322111100


Q ss_pred             ----hcccccc--------cccc-CCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353          252 ----WGKKKLS--------EIGL-PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL  317 (426)
Q Consensus       252 ----~~~~~v~--------~~~~-~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~  317 (426)
                          ....+..        .+++ .+|... +.++...++...+++++++-+++...|. ++| ++.|+||.+|+++..
T Consensus       619 ~~~~~f~~~~~~~~~~~~~~~~lk~il~~t-p~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G-~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  619 TTSIYFNDPSPSAVAGIPSRLDLKDILDMT-PFTVTDLTPMETVVDLFRKLGLRQILVT-KNG-ILLGIITKKDCLRHT  694 (696)
T ss_pred             ecccccCCCCccccCCCCCCcCceeeccCC-cccccccCcHHHHHHHHHhhCceEEEEc-cCC-eeEeeeehHHHHHhh
Confidence                0011111        1111 267765 8999999999999999999999888775 457 999999999999875

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.39  E-value=0.0021  Score=65.19  Aligned_cols=138  Identities=19%  Similarity=0.218  Sum_probs=96.5

Q ss_pred             CCceEEEeCC-CCHHHHHHHHHHCCcccceeeec-CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHH
Q 014353           63 PSQVIEIKSD-TSLAEAVEILAQHRILSAPVVDV-DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAA  140 (426)
Q Consensus        63 ~~~vi~v~~~-~sl~~A~~~l~~~~i~slPVvd~-~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~  140 (426)
                      ...++++..+ .++.|...+|.+......||+=+ ++       ++++|+|+.+|+...+........+...        
T Consensus       555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~s-------q~lvGfv~rr~l~~~i~~ar~~q~~~~~--------  619 (696)
T KOG0475|consen  555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDS-------QRLVGFVLRRNLFLAILNARKIQSFIVT--------  619 (696)
T ss_pred             chhheeccccceeHHHHHHHHhhcccCCceEEEcccc-------ceeEEEEchHHHHHHHhhhcccccccee--------
Confidence            4467777777 99999999999999999999754 43       8999999999999888754322221100        


Q ss_pred             hhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEE
Q 014353          141 AVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVV  220 (426)
Q Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVv  220 (426)
                                .....+.+.+...         ...-.....+++|.-    .+.++...+|++-+++++.+-+++.+.|.
T Consensus       620 ----------~~~~f~~~~~~~~---------~~~~~~~~lk~il~~----tp~tv~d~tp~~~v~~~F~~lg~~~~~v~  676 (696)
T KOG0475|consen  620 ----------TSIYFNDPSPSAV---------AGIPSRLDLKDILDM----TPFTVTDLTPMETVVDLFRKLGLRQILVT  676 (696)
T ss_pred             ----------cccccCCCCcccc---------CCCCCCcCceeeccC----CcccccccCcHHHHHHHHHhhCceEEEEc
Confidence                      0011111111000         001122345666664    56788889999999999999999988887


Q ss_pred             eCCCCeEEEEEeHHHHHHHH
Q 014353          221 DLGEGTIDNIITQSSVIHML  240 (426)
Q Consensus       221 d~~~~~l~Giis~~Dl~~~l  240 (426)
                      .  +|++.|+||.+|++++.
T Consensus       677 ~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  677 K--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             c--CCeeEeeeehHHHHHhh
Confidence            6  89999999999998864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.22  E-value=0.001  Score=62.58  Aligned_cols=149  Identities=17%  Similarity=0.251  Sum_probs=101.7

Q ss_pred             cEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhh---hccccccccccCCcccCC-eeEeCCCCcHHHHHHHHHhcC
Q 014353          215 KSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES---WGKKKLSEIGLPIMSANH-IVKVYEDEPVLQAFKLMRRKK  290 (426)
Q Consensus       215 ~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~---~~~~~v~~~~~~im~~~~-~~~v~~~~~v~~a~~~m~~~~  290 (426)
                      ++|.++.  +|+++.+=|..+++..-.+..-..++..   ..-.+..+    +|.... ...-.+...-..++..+.+..
T Consensus       233 ~rIaimk--dG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~----IM~~~~~~~~~~~~~~~~~al~~~~~~~  306 (386)
T COG4175         233 DRIAIMK--DGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKD----IMRRPDLLIRKTPGDGPRVALKLLRDEG  306 (386)
T ss_pred             ceEEEec--CCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHH----hhcccccccccccccccchhhhhhhhcc
Confidence            4566665  7999999999888664432211111111   11123333    666311 222222334446778888888


Q ss_pred             CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHH
Q 014353          291 IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIH  370 (426)
Q Consensus       291 ~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~  370 (426)
                      .+.+.+++..+ +.+|+++..++.....                                  ...+.++..++++.+.+.
T Consensus       307 ~~~~~~~~~~~-~~~g~v~~~~~~~~~~----------------------------------~~~~~~v~~d~~~~~~~~  351 (386)
T COG4175         307 REYGYAVDRGN-KFVGVVSIDSLVKAAL----------------------------------IDDVLTVDADTPLSEILA  351 (386)
T ss_pred             chhhHHHhccC-ceeeEEeccchhcccc----------------------------------cccccccCccchHHHHHH
Confidence            87888888665 8999999998876511                                  126678999999999998


Q ss_pred             HHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          371 LLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       371 ~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      .+.+... .++|+|++++++|+|+...++.++.+.
T Consensus       352 ~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~~  385 (386)
T COG4175         352 RIRQAPC-PVAVVDEDGRYVGIISRGELLEALARI  385 (386)
T ss_pred             HHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhcC
Confidence            8887766 577999999999999999999998764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.16  E-value=0.0048  Score=61.07  Aligned_cols=83  Identities=13%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             cCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC-CccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHH
Q 014353          289 KKIGGIPVVEKGGNKAVGNISLRDIQFLLTA-PEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKE  367 (426)
Q Consensus       289 ~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~  367 (426)
                      ++...++|+|.      |+++..+...+... .+              ..+.+ +          .....++++++++.+
T Consensus       298 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------~~~~~-~----------~~~~~~~~~~~~~~~  346 (382)
T TIGR03415       298 RRDTWLFTIDK------QVRRRDAKLPVQAWAAE--------------QEVES-L----------EAAPTVINPDTLMRD  346 (382)
T ss_pred             cccceeEeecc------ceecccchHhHhhcccc--------------cchhh-h----------cccCcccCCCCcHHH
Confidence            78888999984      78887776654321 11              01121 1          225678999999999


Q ss_pred             HHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          368 LIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       368 ~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                      ++..+...+. -++|+|+ |+++|+|+..++++.+.+
T Consensus       347 ~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       347 VLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             HHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence            9998888775 4788885 999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.93  E-value=0.06  Score=50.95  Aligned_cols=111  Identities=18%  Similarity=0.231  Sum_probs=80.1

Q ss_pred             cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccc
Q 014353          179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLS  258 (426)
Q Consensus       179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~  258 (426)
                      .+..++|..  .++.+.-.+...-..++..+.+.+.+.+.+++ ..++.+|+++..+++..                   
T Consensus       274 ltA~~IM~~--~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~-------------------  331 (386)
T COG4175         274 LTAKDIMRR--PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA-------------------  331 (386)
T ss_pred             eeHHHhhcc--cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------------------
Confidence            467778874  11222223333334567777777777777777 47789999998886553                   


Q ss_pred             ccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       259 ~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                      .    .. . .+.++..++++.+.+..+.+.+. .++|+|+++ +++|+|++..++.++..
T Consensus       332 ~----~~-~-~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~-r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 A----LI-D-DVLTVDADTPLSEILARIRQAPC-PVAVVDEDG-RYVGIISRGELLEALAR  384 (386)
T ss_pred             c----cc-c-cccccCccchHHHHHHHHhcCCC-ceeEEcCCC-cEEEEecHHHHHHHHhc
Confidence            0    11 2 37888999999999998887765 788999998 99999999999998753

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.83  E-value=0.21  Score=52.21  Aligned_cols=64  Identities=17%  Similarity=0.251  Sum_probs=53.5

Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccC
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAG  245 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~  245 (426)
                      ...|+++|-+    ++..+..+++..|+-+.+..+.++.+|+++..+ .-++|.|.++.|..++..+..
T Consensus       587 ~v~VE~iMV~----dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  587 TVKVEHIMVT----DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             EEEeeeeccc----cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence            3468999998    999999999999999998876699999997543 458999999999999876533

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.60  E-value=0.19  Score=49.85  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=70.8

Q ss_pred             ccchhhhccccccCCcEEe-cCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353          178 NTKVRDIAGSFRWAPFLAL-QKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK  256 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v-~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~  256 (426)
                      -.++.++|.     +...+ ..+.+  .++..   ++...+.|+|.      |+++..+..........         ..
T Consensus       273 ~l~a~~~m~-----~~~~~~~~~~~--~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------~~  327 (382)
T TIGR03415       273 VLTARSLMR-----PLTDLEHVDGG--WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAE---------QE  327 (382)
T ss_pred             ceeHHHHhc-----ccccccccCcc--hhhhh---cccceeEeecc------ceecccchHhHhhcccc---------cc
Confidence            346778885     32223 22222  23332   67888888882      78887776554432111         12


Q ss_pred             ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      +.++     .. .+.++.+++++.+++..+.+.++ -++|+|+ | +++|+|++.+++..+.
T Consensus       328 ~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~-~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       328 VESL-----EA-APTVINPDTLMRDVLAARHRTGG-AILLVEN-G-RIVGVIGDDNIYHALL  380 (382)
T ss_pred             hhhh-----cc-cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-C-eEEEEEeHHHHHHHHh
Confidence            2221     12 37888999999999999888775 5888886 7 9999999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.06  E-value=0.52  Score=49.44  Aligned_cols=66  Identities=21%  Similarity=0.229  Sum_probs=56.1

Q ss_pred             hccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhc
Q 014353           51 FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQS  124 (426)
Q Consensus        51 ~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~  124 (426)
                      .-.+.++.|  |-+++..|..++|..|--+.+....++++|+||+...      .-++|.|..+.+...+-.+.
T Consensus       585 ~h~v~VE~i--MV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~es------miLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  585 VHTVKVEHI--MVTDVKYITKDTTYRELREALQTTTLRSFPLVESKES------MILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             eeEEEeeee--ccccceeeeccCcHHHHHHHHHhCccceeccccCccc------ceeeehhHHHHHHHHHHhhc
Confidence            335666777  8999999999999999999999999999999997542      78999999999998876543

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=89.48  E-value=0.69  Score=47.48  Aligned_cols=125  Identities=16%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             Cccc-CCeeEeCCCCcHH-HHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          264 IMSA-NHIVKVYEDEPVL-QAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       264 im~~-~~~~~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                      +|++ +++.....+..+. +....+.+.+++++||.+.+....+|..=...++.+......+.                 
T Consensus       209 vmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~-----------------  271 (498)
T KOG2118|consen  209 VMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLE-----------------  271 (498)
T ss_pred             hccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccc-----------------
Confidence            7776 4567777777766 55666779999999999875534444433333333332111110                 


Q ss_pred             hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353          342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF  410 (426)
Q Consensus       342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~  410 (426)
                         ..++...+-.....++.+.++.+.++.|.+.+.|.+.|.+ ...-+++++..|+ .....+.....
T Consensus       272 ---~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~  335 (498)
T KOG2118|consen  272 ---PLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEE  335 (498)
T ss_pred             ---cccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhcceecccc
Confidence               1122333344788999999999999999999999998888 5678999999998 66655555444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=89.32  E-value=0.71  Score=42.64  Aligned_cols=116  Identities=18%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc---HHH-HHHHHHHHhhhc
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT---AKN-FLTAVRKYMEEH  345 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~---~~~-~~~~v~~~~~~~  345 (426)
                      ++.|  +..+.||+++-     .++.|.++ | +++=+-+..+++..-. ++...++-...   ... ....+.+.+...
T Consensus       189 ivfV--THDidEA~kLa-----dri~vm~~-G-~i~Q~~~P~~il~~Pa-n~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         189 IVFV--THDIDEALKLA-----DRIAVMDA-G-EIVQYDTPDEILANPA-NDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEE--ecCHHHHHhhh-----ceEEEecC-C-eEEEeCCHHHHHhCcc-HHHHHHHhccccccccccchhhHHHhhccc
Confidence            5555  44567888554     35778875 6 8999999877765421 11110000000   000 001122222110


Q ss_pred             CCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353          346 HHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR  401 (426)
Q Consensus       346 ~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~  401 (426)
                      ..      ..--.........+++..+...+...+||+|++|+++|.||..+|+..
T Consensus       259 ~~------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         259 EP------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cc------ccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            00      011223344455668889999999999999999999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=84.39  E-value=1.3  Score=40.98  Aligned_cols=40  Identities=25%  Similarity=0.156  Sum_probs=35.2

Q ss_pred             CCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHH
Q 014353           72 DTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVW  119 (426)
Q Consensus        72 ~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~  119 (426)
                      ...-.+|+..+...+...+||+|++        |+++|.++..+++..
T Consensus       269 ~~~~~~~ls~~~~~~~~~~~Vvd~~--------g~~~G~vt~~~l~~~  308 (309)
T COG1125         269 GFVDRDALSDFLARGRSVLPVVDED--------GRPLGTVTRADLLDE  308 (309)
T ss_pred             chhhHHHHHHHHhcCCceeEEECCC--------CcEeeEEEHHHHhhh
Confidence            4455669999999999999999999        999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
3kh5_A	280	Crystal Structure Of Protein Mj1225 From Methanocal		1e-06
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		4e-06
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		4e-06
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		5e-06
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-05
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		3e-05
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		5e-05
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		1e-04
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-04
3tsb_A	511	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-04
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		8e-04
2ef7_A	133	Crystal Structure Of St2348, A Hypothetical Protein		9e-04

>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From Methanocaldococcus Jannaschii, A Putative Archaeal Homolog Of G-Ampk. Length = 280

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
           + I     IV VY    + +A   M   K   +PVV  G NK VG I+  DI   +    
Sbjct: 6   MKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS 65
Query: 322 IYHDYRSITAKNFLTA----VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKI 377
            Y+  R    +NFL A    VR+ MEE+          ++T   N  I E I    +K +
Sbjct: 66  KYNLIREKHERNFLAAINEPVREIMEEN----------VITLKENADIDEAIETFLTKNV 115
Query: 378 HRIYVVDFNGNLEGVITLRDIISRLVHE 405
               +V+    L  +IT RD+I  L+ +
Sbjct: 116 GGAPIVNDENQLISLITERDVIRALLDK 143

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 217 IPVVDLGEGT----IDNIITQSSVIHMLA-ECAGLEWFESWGKKKLSEIGLPIMSANHIV 271
           IP++D  E T    + +++TQ  ++  +A  C    +       K+    L I++ +++ 
Sbjct: 148 IPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFL------KIPIGDLNIITQDNMK 201
Query: 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331
                 PV+   +++ + ++  +P++++ G             +L+   E Y D   +  
Sbjct: 202 SCQMTTPVIDVIQMLTQGRVSSVPIIDENG-------------YLINVYEAY-DVLGLIK 247
Query: 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEG 391
                 +   + E     S    G+ TC++N  +  ++  +   ++HR +VVD  G L G
Sbjct: 248 GGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVG 307
Query: 392 VITLRDII 399
           V+TL DI+
Sbjct: 308 VLTLSDIL 315

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
           +PV+D   G    I+T   ++  L           +  K L E  L I +  +I  V   
Sbjct: 152 LPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEE--LQIGTYANIAMVRTT 209
Query: 277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
            PV  A  +  + ++  +PVV++ G + V   S  D+   L A + Y+        N   
Sbjct: 210 TPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDV-INLAAEKTYN--------NLDV 259
Query: 337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
           +V K ++   H       G++ C  + T++ +I+ L   ++HR+ VVD +  ++G+++L 
Sbjct: 260 SVTKALQHRSH----YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS 315
Query: 397 DIISRLV 403
           DI+  LV
Sbjct: 316 DILQALV 322

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 217 IPVVDLGEGT----IDNIITQSSVIHMLA-ECAGLEWFESWGKKKLSEIGLPIMSANHIV 271
           IP++D  E T    + +++TQ  ++  +A  C    +       K+    L I++ +++ 
Sbjct: 141 IPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFL------KIPIGDLNIITQDNMK 194
Query: 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331
                 PV+   +++ + ++  +P++++ G             +L+   E Y D   +  
Sbjct: 195 SCQMTTPVIDVIQMLTQGRVSSVPIIDENG-------------YLINVYEAY-DVLGLIK 240
Query: 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEG 391
                 +   + E     S    G+ TC++N  +  ++  +   ++HR +VVD  G L G
Sbjct: 241 GGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVG 300
Query: 392 VITLRDII 399
           V+TL DI+
Sbjct: 301 VLTLSDIL 308

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
           L I++ +++       PV+   +++ + ++  +P++++ G             +L+   E
Sbjct: 13  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-------------YLINVYE 59
Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
            Y D   +        +   + E     S    G+ TC++N  +  ++  +   ++HR +
Sbjct: 60  AY-DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFF 118
Query: 382 VVDFNGNLEGVITLRDII 399
           VVD  G L GV+TL DI+
Sbjct: 119 VVDDVGRLVGVLTLSDIL 136

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
           L I++ ++        PV+   + + + ++  +P++++ G             +L+   E
Sbjct: 13  LNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENG-------------YLINVYE 59
Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
            Y D   +        +   + E     S    G+ TC++N  +  +   +   ++HR +
Sbjct: 60  AY-DVLGLIKGGIYNDLSLSVGEALXRRSDDFEGVYTCTKNDKLSTIXDNIRKARVHRFF 118
Query: 382 VVDFNGNLEGVITLRDII 399
           VVD  G L GV+TL DI+
Sbjct: 119 VVDDVGRLVGVLTLSDIL 136

>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Bacillus Anthracis Str. Ames Length = 511

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 25/121 (20%)
Query: 279 VLQAFKLMRRKKIGGIPVVEK-GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTA 337
           V  A  LM + +I G+PVV      K VG I+ RD++F+        DY SI   + +T 
Sbjct: 132 VYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI-------QDY-SIKISDVMTK 183
Query: 338 VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRD 397
            +                ++T     T+ E   +L   KI ++ +VD NG L+G+IT++D
Sbjct: 184 EQ----------------LITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKD 227
Query: 398 I 398
           I
Sbjct: 228 I 228

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 24/134 (17%)
Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
           + V  D  V +A  LM   KIGG+PVV++ G + VG ++ RD++F               
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG-RLVGLLTNRDVRF--------------- 149
Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
            KN    ++  M             ++    + ++++   +L   +I ++ +V  +  L 
Sbjct: 150 EKNLSKKIKDLMTPREK--------LIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLV 201
Query: 391 GVITLRDIISRLVH 404
           G+IT++DI+S + H
Sbjct: 202 GLITIKDIMSVIEH 215

>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With Cbs Domains From Sulfolobus Tokodaii Strain7 Length = 133

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 23/130 (17%)
Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
            ++ V +D  +    K+   K IG + VV+  GNK VG I+ RDI   +   +       
Sbjct: 13  QVISVTKDAKLNDIAKVXTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSLE---- 66
Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
             A+ F TA    +     EDSP+ +G +   R   I+ L             VVD  GN
Sbjct: 67  TKAEEFXTASLITI----REDSPI-TGALALXRQFNIRHL------------PVVDDKGN 109
Query: 389 LEGVITLRDI 398
           L+G+I++RDI
Sbjct: 110 LKGIISIRDI 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-62
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-20
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-14
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-58
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-48
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-35
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-10
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-04
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-35
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-11
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	5e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-34
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-20
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-28
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-23
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-17
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-21
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-11
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-20
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-06
1pvm_A	184	Conserved hypothetical protein TA0289; structural	5e-20
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-12
1pvm_A	184	Conserved hypothetical protein TA0289; structural	5e-04
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	8e-20
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-09
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-19
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-12
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	7e-08
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	9e-04
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-19
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-11
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	9e-19
1pbj_A	125	Hypothetical protein; structural genomics, domain,	8e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-18
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-10
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	7e-08
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	3e-18
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-18
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-08
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-07
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-05
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	5e-18
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-04
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	6e-18
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-17
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-17
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-17
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-04
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-17
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-17
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-16
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-07
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-17
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-08
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-07
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-05
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	8e-17
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	3e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	5e-04
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-16
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-09
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-16
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	5e-07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	5e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-16
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-14
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-06
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	6e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	6e-14
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	9e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	4e-13
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-04
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	5e-13
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	8e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	3e-04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-12
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	3e-12
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	1e-04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	5e-12
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-09
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3fio_A	70	A cystathionine beta-synthase domain protein fused	6e-06
3fio_A	70	A cystathionine beta-synthase domain protein fused	3e-05
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-05
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	2e-04
2oux_A	286	Magnesium transporter; 10001B, structural genomics	4e-04

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  202 bits (516), Expect = 5e-62
 Identities = 67/387 (17%), Positives = 141/387 (36%), Gaps = 63/387 (16%)

Query: 20  RSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAV 79
            S  A+     E+      P+ + +       +S       P  S+++   +   + +A 
Sbjct: 2   ESVAAESAPAPENEHSQETPESN-SSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAF 60

Query: 80  EILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALA 139
             L  + + +AP+ D       S    ++G++      + ILH+                
Sbjct: 61  FALVTNGVRAAPLWD-------SKKQSFVGMLTITDF-INILHRYYK------------- 99

Query: 140 AAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKS 199
                                    +    +   E +K    R++     + P + +  +
Sbjct: 100 -------------------------SALVQIYELEEHKIETWREVYLQDSFKPLVCISPN 134

Query: 200 NSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE 259
            S    +  L + K+  +PV+D   G    I+T   ++  L           +  K L E
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEE 194

Query: 260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319
           +   I +  +I  V    PV  A  +  + ++  +PVV++ G + V   S  D+  L   
Sbjct: 195 LQ--IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAE 251

Query: 320 PEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHR 379
               ++   ++    L   R +  E          G++ C  + T++ +I+ L   ++HR
Sbjct: 252 KT--YNNLDVSVTKALQ-HRSHYFE----------GVLKCYLHETLEAIINRLVEAEVHR 298

Query: 380 IYVVDFNGNLEGVITLRDIISRLVHEP 406
           + VVD +  ++G+++L DI+  LV   
Sbjct: 299 LVVVDEHDVVKGIVSLSDILQALVLTG 325

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 90.0 bits (223), Expect = 3e-20
 Identities = 34/264 (12%), Positives = 87/264 (32%), Gaps = 21/264 (7%)

Query: 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD-IAGSFRWAPFLALQKSNSFL 203
           M   A      PE+          +   + F K+ +  D I  S +    +    S    
Sbjct: 1   MESVAAESAPAPENEHSQETPESNSSVYTTFMKSHRCYDLIPTSSK---LVVFDTSLQVK 57

Query: 204 TMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE-----CAGLEWFESWGKKKLS 258
                L    +++ P+ D  + +   ++T +  I++L          +   E    +   
Sbjct: 58  KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWR 117

Query: 259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318
           E+ L       +V +  +  +  A   + R KI  +PV++      +  ++ + I     
Sbjct: 118 EVYLQDSFKP-LVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRI----- 171

Query: 319 APEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIH 378
              +           F++   + ++   + +      +        +   + +    ++ 
Sbjct: 172 LKFLKLFITEFPKPEFMSKSLEELQIGTYAN------IAMVRTTTPVYVALGIFVQHRVS 225

Query: 379 RIYVVDFNGNLEGVITLRDIISRL 402
            + VVD  G +  + +  D+I+  
Sbjct: 226 ALPVVDEKGRVVDIYSKFDVINLA 249

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 71.9 bits (176), Expect = 4e-14
 Identities = 42/290 (14%), Positives = 92/290 (31%), Gaps = 59/290 (20%)

Query: 33  LWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPV 92
                   +   E      E+            ++ I  + SL +AV  L +++I   PV
Sbjct: 95  HRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPV 154

Query: 93  VDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFK 152
           +D ++          + I+                                  +   + K
Sbjct: 155 IDPES-------GNTLYIL----------------------------------THKRILK 173

Query: 153 DLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY 212
            L           F           +  + ++     +A    ++ +      L +  ++
Sbjct: 174 FLKLFITEFPKPEFM----------SKSLEEL-QIGTYANIAMVRTTTPVYVALGIFVQH 222

Query: 213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVK 272
           ++ ++PVVD  +G + +I ++  VI++ AE       +    K L            ++K
Sbjct: 223 RVSALPVVD-EKGRVVDIYSKFDVINLAAEKT-YNNLDVSVTKALQHR--SHYFEG-VLK 277

Query: 273 VYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAPE 321
            Y  E +      +   ++  + VV++      G +SL DI Q L+    
Sbjct: 278 CYLHETLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALVLTGG 326

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  193 bits (491), Expect = 3e-58
 Identities = 61/386 (15%), Positives = 143/386 (37%), Gaps = 81/386 (20%)

Query: 35  DVLEPQLSPTE------KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRIL 88
           DV E Q    +      +    ++ +P         ++I       +  ++ +L  + I+
Sbjct: 3   DVQETQKGALKEIQAFIRSRTSYDVLPT------SFRLIVFDVTLFVKTSLSLLTLNNIV 56

Query: 89  SAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKA 148
           SAP+ D       S  +++ G++  A     I +                          
Sbjct: 57  SAPLWD-------SEANKFAGLLTMADFVNVIKYY------------------------- 84

Query: 149 ALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAP--FLALQKSNSFLTML 206
                         S +F EA+   + ++   +R++       P   + +   +S +   
Sbjct: 85  ------------YQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDAC 132

Query: 207 LLLSKYKMKSIPVVDL----GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGL 262
           L +SK + + IP++D+    G   I +++TQ  ++  ++         +  +  L+++ +
Sbjct: 133 LAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET---AMLRVPLNQMTI 189

Query: 263 PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
              S  ++     +  V    K++  K I  +P+V   G   +      D+  L+   + 
Sbjct: 190 GTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGDY 246

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
            +   S+     L       +           G+ TC     +  +   +   ++HR++V
Sbjct: 247 SNLDLSV--GEALLKRPANFD-----------GVHTCRATDRLDGIFDAIKHSRVHRLFV 293

Query: 383 VDFNGNLEGVITLRDIISRLVHEPPG 408
           VD N  LEG+++L DI++ ++++   
Sbjct: 294 VDENLKLEGILSLADILNYIIYDKTT 319

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  167 bits (423), Expect = 2e-48
 Identities = 54/362 (14%), Positives = 134/362 (37%), Gaps = 74/362 (20%)

Query: 46  KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWID 105
                ++ +PV        ++I + +   + +++ +L Q+ I+SAP+ D           
Sbjct: 28  NSKTSYDVLPVS------YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTS------- 74

Query: 106 RYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGN 165
           R+ G++        I +                                          +
Sbjct: 75  RFAGLLTTTDFINVIQY-------------------------------YFSNPDKFELVD 103

Query: 166 FFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEG 225
             +     +  +   V  +          ++  S       L + + +   IP++D  E 
Sbjct: 104 KLQLDGLKDIERALGVDQL-------DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEE 156

Query: 226 T----IDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQ 281
           T    + +++TQ  ++  +A          + K  + ++   I++ +++       PV+ 
Sbjct: 157 THREIVVSVLTQYRILKFVALNC---RETHFLKIPIGDLN--IITQDNMKSCQMTTPVID 211

Query: 282 AFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341
             +++ + ++  +P++++ G   +      D+  L+    IY+D           +V + 
Sbjct: 212 VIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKG-GIYNDLS--------LSVGEA 261

Query: 342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401
           +       S    G+ TC++N  +  ++  +   ++HR +VVD  G L GV+TL DI+  
Sbjct: 262 LMRR----SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY 317

Query: 402 LV 403
           ++
Sbjct: 318 IL 319

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  127 bits (322), Expect = 1e-35
 Identities = 26/150 (17%), Positives = 65/150 (43%), Gaps = 16/150 (10%)

Query: 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           K  + ++ + I   N +       PV+   +++ + ++  +P++++ G   +      D+
Sbjct: 7   KIPIGDLNI-ITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDV 63

Query: 314 QFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLD 373
             L+               +   +V + +     +   +     TC++N  +  ++  + 
Sbjct: 64  LGLIKGG---------IYNDLSLSVGEALMRRSDDFEGV----YTCTKNDKLSTIMDNIR 110

Query: 374 SKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
             ++HR +VVD  G L GV+TL DI+  ++
Sbjct: 111 KARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           +L++ ++ S+P++D   G + N+     V+ ++      +   S G+     +       
Sbjct: 36  MLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEA----LMRRSDDF 90

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAP 320
             +    +++ +      +R+ ++    VV+  G + VG ++L DI +++L   
Sbjct: 91  EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILLGS 143

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVE 112
             +   +  T + + +++L Q R+ S P++D +           I + E
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN--------GYLINVYE 59

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  127 bits (322), Expect = 3e-34
 Identities = 51/340 (15%), Positives = 123/340 (36%), Gaps = 73/340 (21%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQ 123
            +++ +   T++ +A+  + +++    PVV+          ++ +GI+    I  ++   
Sbjct: 12  KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN-------NKVVGIITSMDIVDFMGGG 64

Query: 124 SEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD 183
           S+    R     + LAA                                     N  VR+
Sbjct: 65  SKYNLIREKHERNFLAA------------------------------------INEPVRE 88

Query: 184 IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243
           I         + L+++      +       +   P+V+  E  + ++IT+  VI  L + 
Sbjct: 89  IMEE----NVITLKENADIDEAIETFLTKNVGGAPIVN-DENQLISLITERDVIRALLDK 143

Query: 244 AGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNK 303
                        + +     ++ + ++     E +    + M R     +PVV +G  +
Sbjct: 144 IDENE-------VIDDY----ITRD-VIVATPGERLKDVARTMVRNGFRRLPVVSEG--R 189

Query: 304 AVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTA-VRKYMEEHHHEDSPLLSGMVTCSRN 362
            VG I+  D   LL +   ++  ++   +      + + M+            ++T    
Sbjct: 190 LVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKR----------DVITAKEG 239

Query: 363 HTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402
             +K++  ++ +  I  + VVD N  ++G+IT +D++   
Sbjct: 240 DKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 88.3 bits (219), Expect = 7e-20
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 15/146 (10%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
             +   IV VY    + +A   M   K   +PVV  G NK VG I+  DI   +     Y
Sbjct: 9   AQNKK-IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY 67

Query: 324 HDYRSITAKNFLTA----VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHR 379
           +  R    +NFL A    VR+ MEE+          ++T   N  I E I    +K +  
Sbjct: 68  NLIREKHERNFLAAINEPVREIMEEN----------VITLKENADIDEAIETFLTKNVGG 117

Query: 380 IYVVDFNGNLEGVITLRDIISRLVHE 405
             +V+    L  +IT RD+I  L+ +
Sbjct: 118 APIVNDENQLISLITERDVIRALLDK 143

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 53/178 (29%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQ 123
             VI       L +    + ++     PVV  +         R +GI+        +   
Sbjct: 156 RDVIVATPGERLKDVARTMVRNGFRRLPVVS-E--------GRLVGIITSTDFIKLLGSD 206

Query: 124 SEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD 183
                 ++ +        +         +++      M        +T  E     K++ 
Sbjct: 207 WAFNHMQTGNVREITNVRM---------EEI------MKRD----VITAKE---GDKLKK 244

Query: 184 IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA 241
           IA                      ++    + ++PVVD     I  IIT+  V+   A
Sbjct: 245 IA---------------------EIMVTNDIGALPVVD-ENLRIKGIITEKDVLKYFA 280

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  111 bits (280), Expect = 4e-28
 Identities = 45/339 (13%), Positives = 105/339 (30%), Gaps = 83/339 (24%)

Query: 66  VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE 125
              +  +  L  A + + +  I    V +          ++  G++    +   +    +
Sbjct: 30  PPILSKEDRLGSAFKKINEGGIGRIIVAN----------EKIEGLLTTRDLLSTVESYCK 79

Query: 126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIA 185
               +      +                                         T + D  
Sbjct: 80  DSCSQGDLYHIS----------------------------------------TTPIIDYM 99

Query: 186 GSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAG 245
                   + +  ++   T + ++      S+PVVD        I+T+   + +  +   
Sbjct: 100 TP----NPVTVYNTSDEFTAINIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKDLDE 154

Query: 246 LEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAV 305
                      +       MS   +  +Y++  + QA KLM R+    +PV++    K V
Sbjct: 155 --------IFPVKVF----MSTK-VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN-KVV 200

Query: 306 GNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTI 365
           G +++ +    L       D      K     V+  M          ++ +VT     ++
Sbjct: 201 GIVTVVNAIKQLAKAVDKLDPDYFYGK----VVKDVM----------VTNLVTIDELASV 246

Query: 366 KELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404
                 +  K+I  + +++ +  + G+IT RD++  L H
Sbjct: 247 NRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 285

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 97.5 bits (243), Expect = 4e-23
 Identities = 31/228 (13%), Positives = 78/228 (34%), Gaps = 31/228 (13%)

Query: 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQS 234
           +++   +  +           L K +   +    +++  +  I V +     I+ ++T  
Sbjct: 16  YFQGMNIETLMIK----NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTR 68

Query: 235 SVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGI 294
            ++  +         +       +   +  M+ N  V VY       A  +M  +  G +
Sbjct: 69  DLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPN-PVTVYNTSDEFTAINIMVTRNFGSL 127

Query: 295 PVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLS 354
           PVV+    K VG ++ R+   L    +     +   +                       
Sbjct: 128 PVVDIND-KPVGIVTEREFLLLYKDLDEIFPVKVFMSTKV-------------------- 166

Query: 355 GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402
              T  +   + + + L+  +   R+ V+D +  + G++T+ + I +L
Sbjct: 167 --QTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQL 212

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M  N    + +++ +  AFK +    IG I V      K  G ++ RD+   + +    
Sbjct: 25  LMIKN-PPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD 80

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
              +        T +  YM              VT          I+++ ++    + VV
Sbjct: 81  SCSQGDLYHISTTPIIDYMT------PNP----VTVYNTSDEFTAINIMVTRNFGSLPVV 130

Query: 384 DFNGNLEGVITLRDIISRLVHEPP 407
           D N    G++T R+ +        
Sbjct: 131 DINDKPVGIVTEREFLLLYKDLDE 154

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 44/207 (21%)

Query: 66  VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE 125
            + + + +    A+ I+      S PVVD++        D+ +GIV      +      E
Sbjct: 103 PVTVYNTSDEFTAINIMVTRNFGSLPVVDIN--------DKPVGIVTEREFLLLYKDLDE 154

Query: 126 P--------PSPRSSSPSSALAAAVNGMSKAAL-----------------FKDLGPESAS 160
                       ++      L  AV  M +                      +   + A 
Sbjct: 155 IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK 214

Query: 161 MTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVV 220
                        +++    V+D+  +      + + +  S       +   ++ S+ ++
Sbjct: 215 ------AVDKLDPDYFYGKVVKDVMVT----NLVTIDELASVNRAAAEMIVKRIGSLLIL 264

Query: 221 DLGEGTIDNIITQSSVIHMLAECAGLE 247
           +  + TI  IIT+  ++  L     +E
Sbjct: 265 N-KDNTIRGIITERDLLIALHHILVME 290

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 88.0 bits (219), Expect = 3e-21
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 25/150 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
            M    ++ V +D  +    K+M  K IG + VV+  GNK VG I+ RDI   +      
Sbjct: 9   YMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGK---- 61

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                   K+  T   ++M             ++T   +  I   + L+    I  + VV
Sbjct: 62  -------GKSLETKAEEFMTAS----------LITIREDSPITGALALMRQFNIRHLPVV 104

Query: 384 DFNGNLEGVITLRDIISRLVHEPPGYFGDF 413
           D  GNL+G+I++RDI  R + +     G++
Sbjct: 105 DDKGNLKGIISIRDIT-RAIDDMFETMGEY 133

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 15/106 (14%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           ++++  + S+ VVD        IIT+  ++  + +   LE        K  E     M+A
Sbjct: 29  VMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSLE-------TKAEE----FMTA 75

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           + ++ + ED P+  A  LMR+  I  +PVV+  G    G IS+RDI
Sbjct: 76  S-LITIREDSPITGALALMRQFNIRHLPVVDDKG-NLKGIISIRDI 119

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 18/144 (12%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-----QFLLT 318
           ++S      V ED P+ +    +    +     V +   K VG I +  +          
Sbjct: 21  LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFG 78

Query: 319 APEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIH 378
                   RS   +       + M              V    +  ++E + L+    I 
Sbjct: 79  FIPKEELIRSSMKRLIAKNASEIM-----------LDPVYVHMDTPLEEALKLMIDNNIQ 127

Query: 379 RIYVVDFNGNLEGVITLRDIISRL 402
            + VVD  G + G +   +I+  L
Sbjct: 128 EMPVVDEKGEIVGDLNSLEILLAL 151

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 8/54 (14%), Positives = 20/54 (37%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410
                +  I+E++  +    + R   V  +  L G+I +  ++        G+ 
Sbjct: 27  TVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI 80

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/179 (11%), Positives = 53/179 (29%), Gaps = 49/179 (27%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQ 123
            +   ++ DT + E V+ + +  +     V  D        ++ +G++    +       
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD--------NKLVGMIPVMHLLKVSGFH 75

Query: 124 SEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD 183
                P+     S++   +     A    ++      M        +       +T + +
Sbjct: 76  FFGFIPKEELIRSSMKRLIA--KNA---SEI------MLD-----PVYVHM---DTPLEE 116

Query: 184 IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242
                                   L+    ++ +PVVD  +G I   +    ++  L +
Sbjct: 117 ALK---------------------LMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK 153

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 86.3 bits (214), Expect = 5e-20
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 21/144 (14%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM++N    V  +  V  A K+M    + G+ V +  G   VG +S R I          
Sbjct: 14  IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG-NDVGLLSERSIIKRFIPRN-- 69

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                   K     +R  M        P+         ++ +K++   L    + R  VV
Sbjct: 70  -------KKPDEVPIRLVMR------KPI----PKVKSDYDVKDVAAYLSENGLERCAVV 112

Query: 384 DFNGNLEGVITLRDIISRLVHEPP 407
           D  G + G++TL D+   L     
Sbjct: 113 DDPGRVVGIVTLTDLSRYLSRASI 136

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           ++++  +  + V D   G    ++++ S+I        +   +   +  +      +M  
Sbjct: 34  IMNENHLYGLVVKD-DNGNDVGLLSERSIIK-----RFIPRNKKPDEVPIRL----VMRK 83

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
             I KV  D  V      +    +    VV+  G + VG ++L D+
Sbjct: 84  P-IPKVKSDYDVKDVAAYLSENGLERCAVVDDPG-RVVGIVTLTDL 127

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 8/48 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
           S    +  +T++ +AV+I+ ++ +    V D +           +G++
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------GNDVGLL 56

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 85.5 bits (212), Expect = 8e-20
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 13/154 (8%)

Query: 264 IMSANH-IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
            M+    +  V     V  A +L+  KK+ G+PV++      VG +S  D+  L      
Sbjct: 9   FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW-TLVGVVSDYDL--LALDSIS 65

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMV---------TCSRNHTIKELIHLLD 373
                       + +  K   E     S     +V             +  +++   LL 
Sbjct: 66  GRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLL 125

Query: 374 SKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP 407
             K  R+ VVD +G L G++T  +++   +    
Sbjct: 126 ETKFRRLPVVDADGKLIGILTRGNVVRAALQIKR 159

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 40/183 (21%)

Query: 62  PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWIL 121
           P   +  +K  TS+ +A+E+L + ++   PV+D +           +G+V    + + + 
Sbjct: 12  PRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN--------WTLVGVVSDYDL-LALD 62

Query: 122 HQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESAS--MTSGNFFEALTTSEFYKNT 179
             S      ++      +          L      +     MT       L   +   +T
Sbjct: 63  SISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP----SPLVVRD---ST 115

Query: 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHM 239
            + D A                      LL + K + +PVVD  +G +  I+T+ +V+  
Sbjct: 116 NLEDAAR---------------------LLLETKFRRLPVVD-ADGKLIGILTRGNVVRA 153

Query: 240 LAE 242
             +
Sbjct: 154 ALQ 156

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M+ +    +     +  A  LM    I  +P+V+    K +G +S RD+          
Sbjct: 10  MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDANK-KLLGIVSQRDLLAAQ--ESSL 65

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                  +  F T + + M             + + +    +KE    +   KI  + VV
Sbjct: 66  QRSAQGDSLAFETPLFEVMHTD----------VTSVAPQAGLKESAIYMQKHKIGCLPVV 115

Query: 384 DFNGNLEGVITLRDIISRLVH 404
                L G+IT  D ++  ++
Sbjct: 116 A-KDVLVGIITDSDFVTIAIN 135

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAG--LEWFESWGKKKLSEIGLPIM 265
           L+    ++ +P+VD     +  I++Q  ++           +      +  L E    +M
Sbjct: 30  LMEALDIRHVPIVD-ANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE----VM 84

Query: 266 SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHD 325
             + +  V     + ++   M++ KIG +PVV K     VG I+  D   +  A  +   
Sbjct: 85  HTD-VTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLVGIITDSDF--VTIAINLLEL 139

Query: 326 YRSITAKNFLTAVRKYMEEHH 346
                          +   HH
Sbjct: 140 QEESEPDELDEEQEGHHHHHH 160

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 354 SGM----VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406
             M     T  R HT+ +  HL+++  I  + +VD N  L G+++ RD+++      
Sbjct: 9   DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL 65

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 8/48 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
                +    +L +A  ++    I   P+VD +         + +GIV
Sbjct: 13  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN--------KKLLGIV 52

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 81.8 bits (203), Expect = 4e-19
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 27/142 (19%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           I+S    +  + +  +++A K++ +  I  +P+V++ G K VG I+  DI   L      
Sbjct: 6   ILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDEHG-KLVGIITSWDIAKAL------ 57

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                         + + M  +          ++T   +  +  +   +    I  + VV
Sbjct: 58  --------AQNKKTIEEIMTRN----------VITAHEDEPVDHVAIKMSKYNISGVPVV 99

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           D    + G++T  DI  RL   
Sbjct: 100 DDYRRVVGIVTSEDIS-RLFGG 120

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 17/106 (16%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           +L K+ +  +P+VD   G +  IIT   +              +  KK + E    IM+ 
Sbjct: 26  ILIKHNINHLPIVD-EHGKLVGIITSWDIAK----------ALAQNKKTIEE----IMTR 70

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           N ++  +EDEPV      M +  I G+PVV+    + VG ++  DI
Sbjct: 71  N-VITAHEDEPVDHVAIKMSKYNISGVPVVDDYR-RVVGIVTSEDI 114

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)

Query: 66  VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
            I   S+ S+ EA +IL +H I   P+VD           + +GI+
Sbjct: 11  PITAHSNISIMEAAKILIKHNINHLPIVDEH--------GKLVGII 48

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 80.6 bits (200), Expect = 9e-19
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M  + +  +     +    +       G   VV++G    VG ++  D+   L A    
Sbjct: 6   VMVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKEG--VRVGIVTTWDV---LEAIAEG 59

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
            D   +     +                    +VT S   TIKE    +    + R+ V 
Sbjct: 60  DDLAEVKVWEVME-----------------RDLVTISPRATIKEAAEKMVKNVVWRLLVE 102

Query: 384 DFNGNLEGVITLRDIISRLVHEP 406
           + +  + GVI+  DI+   + + 
Sbjct: 103 E-DDEIIGVISATDILRAKMAKR 124

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 9/48 (18%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
           + V  I    SL + +    ++   S+ VV              +GIV
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVR---------VGIV 47

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 27/145 (18%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M+ N ++     E V++AF+ M + KI  +PV++    K +G ++  DI + L   +  
Sbjct: 13  VMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDDEN-KVIGIVTTTDIGYNLIRDKYT 70

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDS-----KKIH 378
            +            +   M +           ++T   + +I E I  +D      + I+
Sbjct: 71  LETT----------IGDVMTKD----------VITIHEDASILEAIKKMDISGKKEEIIN 110

Query: 379 RIYVVDFNGNLEGVITLRDIISRLV 403
           ++ VVD N  L G+I+  DII  + 
Sbjct: 111 QLPVVDKNNKLVGIISDGDIIRTIS 135

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
            + KYK+ S+PV+D  E  +  I+T + + + L         +   +  + +    +M+ 
Sbjct: 33  KMLKYKISSLPVID-DENKVIGIVTTTDIGYNLIR------DKYTLETTIGD----VMTK 81

Query: 268 NHIVKVYEDEPVLQAFKLM-----RRKKIGGIPVVEKGGNKAVGNISLRDI 313
           + ++ ++ED  +L+A K M     + + I  +PVV+K   K VG IS  DI
Sbjct: 82  D-VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN-KLVGIISDGDI 130

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405
           +T  R+  + E    +   KI  + V+D    + G++T  DI   L+ +
Sbjct: 19  ITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD 67

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 66  VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
           VI  K    + EA E + +++I S PV+D +        ++ IGIV
Sbjct: 18  VITAKRHEGVVEAFEKMLKYKISSLPVIDDE--------NKVIGIV 55

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 24/144 (16%), Positives = 60/144 (41%), Gaps = 24/144 (16%)

Query: 264 IMS--ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
           ++    + +V +  D+ V  A + M    IG + V++    K VG ++ RD        +
Sbjct: 11  LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLD 68

Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
                +        T V++ M             +     N+T ++ + L+   ++  + 
Sbjct: 69  --KPVKD-------TQVKEIMTRQ----------VAYVDLNNTNEDCMALITEMRVRHLP 109

Query: 382 VVDFNGNLEGVITLRDIISRLVHE 405
           V+D +G + G++++ D++   + +
Sbjct: 110 VLD-DGKVIGLLSIGDLVKDAISQ 132

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
           +  V     +  A  ++ +     IPV++    K  G IS   I   +   E     R  
Sbjct: 27  VAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY-KLHGLISTAMILDGILGLERIEFERLE 85

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNL 389
             K     V + M++                   +  + + +        I  V+ +G  
Sbjct: 86  EMK-----VEQVMKQDI----------PVLKLEDSFAKALEMTIDHPF--ICAVNEDGYF 128

Query: 390 EGVITLRDI---ISRLVHE 405
           EG++T R I   +++ V +
Sbjct: 129 EGILTRRAILKLLNKKVRQ 147

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIM 265
           LL+L K    +IPV+D     +  +I+ + ++  +     +E+ E   + K+ +    +M
Sbjct: 40  LLVLVKSGYSAIPVLD-PMYKLHGLISTAMILDGILGLERIEF-ERLEEMKVEQ----VM 93

Query: 266 SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
             +  V +  ++   +A ++        I  V + G    G ++ R I
Sbjct: 94  KQDIPV-LKLEDSFAKALEMTIDHPF--ICAVNEDG-YFEGILTRRAI 137

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 15/91 (16%)

Query: 325 DYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVD 384
           +++ I  K+ + +  K                      + ++  + +L       I V+D
Sbjct: 11  EFQQIFVKDLMISSEKV---------------AHVQIGNGLEHALLVLVKSGYSAIPVLD 55

Query: 385 FNGNLEGVITLRDIISRLVHEPPGYFGDFFD 415
               L G+I+   I+  ++      F    +
Sbjct: 56  PMYKLHGLISTAMILDGILGLERIEFERLEE 86

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 51  FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGI 110
           F+ I V+       +V  ++    L  A+ +L +    + PV+D           +  G+
Sbjct: 12  FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM--------YKLHGL 63

Query: 111 V 111
           +
Sbjct: 64  I 64

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 79.1 bits (196), Expect = 5e-18
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 23/142 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM+A  +  V E E +  A + MR   IG +P+      +  G ++ RDI  ++      
Sbjct: 13  IMNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDDD-RLHGMLTDRDI--VIKGLAAG 68

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
            D  + TA                        +     N +I+E++++++  ++ R+ V+
Sbjct: 69  LDPNTATAGELAR-----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVI 111

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
                L G++T  DI  R + E
Sbjct: 112 S-EHRLVGIVTEADIA-RHLPE 131

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
           + V  +    +L  A + + +H I + P+   D        DR  G++
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDD--------DRLHGML 55

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 78.8 bits (195), Expect = 6e-18
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
            M+   ++ V     V +A +LM    +G + V+   G   VG  +  DI   +  P + 
Sbjct: 12  YMTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDDG-NVVGFFTKSDIIRRVIVPGLP 69

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
           +D            V + M  +          ++T + N  + E++  +   +I  I + 
Sbjct: 70  YD----------IPVERIMTRN----------LITANVNTPLGEVLRKMAEHRIKHILIE 109

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           +  G + G+ TL D++      
Sbjct: 110 E-EGKIVGIFTLSDLLEASRRR 130

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 64  SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
            +++ +K  TS+ EA  ++ +  + S  V++ D           +G  
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD--------GNVVGFF 54

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 28/143 (19%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
            ++ +    V E   V +    MR+ +     V ++ G    G ++  D+          
Sbjct: 18  WVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDREG-HFRGVVNKEDLLD-------- 67

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                    +  ++V   +                      I   + L    +   + VV
Sbjct: 68  --------LDLDSSVFNKVSLP----------DFFVHEEDNITHALLLFLEHQEPYLPVV 109

Query: 384 DFNGNLEGVITLRDIISRLVHEP 406
           D    L+G ++L D +  L+   
Sbjct: 110 DEEMRLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 19/106 (17%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
            + +Y+     V D  EG    ++ +  ++            +      +       +S 
Sbjct: 38  RMRQYQTNECIVKD-REGHFRGVVNKEDLL------------DLDLDSSVFN----KVSL 80

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
                V+E++ +  A  L    +   +PVV++   +  G +SL D 
Sbjct: 81  PDFF-VHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDF 124

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 23/144 (15%)

Query: 263 PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
           P      I  V +++ V  A KLM  K IG + VV+  G+   G ++ RD    +   E 
Sbjct: 17  PDSGRT-IYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQE- 72

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
                     +  T V + M             +     + +  E + L+   ++  + V
Sbjct: 73  --------RSSKATRVEEIMTAK----------VRYVEPSQSTDECMALMTEHRMRHLPV 114

Query: 383 VDFNGNLEGVITLRDIISRLVHEP 406
           +D  G L G+I++ D++  ++ + 
Sbjct: 115 LD-GGKLIGLISIGDLVKSVIADQ 137

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 22/144 (15%)

Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
           L     + +V V  D  + +A   +   KIG + V +  G   +G  + RD+   +    
Sbjct: 30  LDRKGRD-VVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG-VVLGIFTERDLVKAVAGQG 87

Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
                    A +   +V   M ++          +V C  N T  +L+ ++   +   + 
Sbjct: 88  ---------AASLQQSVSVAMTKN----------VVRCQHNSTTDQLMEIMTGGRFRHVP 128

Query: 382 VVDFNGNLEGVITLRDIISRLVHE 405
           V + NG L G+I++ D++   + E
Sbjct: 129 VEE-NGRLAGIISIGDVVKARIGE 151

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 63  PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
              V+ +  D S+ EA   L  H+I +  V D D           +GI 
Sbjct: 34  GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD--------GVVLGIF 74

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 24/148 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
             S    V ++E+  V  A   M  + +G + VV++     VG +S +D+       +  
Sbjct: 22  FQSIP--VVIHENVSVYDAICTMFLEDVGTLFVVDRDA-VLVGVLSRKDLLRASIGQQEL 78

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                         V   M    +        +  C R   + ++   L  K+I  + V+
Sbjct: 79  TS----------VPVHIIMTRMPN--------ITVCRREDYVMDIAKHLIEKQIDALPVI 120

Query: 384 DFNGN---LEGVITLRDIISRLVHEPPG 408
                   + G +T  ++   LV     
Sbjct: 121 KDTDKGFEVIGRVTKTNMTKILVSLSEN 148

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 14/109 (12%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
            +    + ++ VVD  +  +  ++++  ++        L          +  I    M+ 
Sbjct: 41  TMFLEDVGTLFVVD-RDAVLVGVLSRKDLLRASIGQQELT------SVPVHII----MTR 89

Query: 268 N-HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKA--VGNISLRDI 313
             +I     ++ V+   K +  K+I  +PV++        +G ++  ++
Sbjct: 90  MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNM 138

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 80.6 bits (199), Expect = 3e-17
 Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 38/195 (19%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           L  KYK++S PVV+  EG +  II+   ++                +++L+ +    +  
Sbjct: 26  LFKKYKVRSFPVVN-KEGKLVGIISVKRIL-----------VNP-DEEQLAML----VKR 68

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYR 327
           + +  V E++ + +A KLM       + VV+  G K VG +++ DI     A    +   
Sbjct: 69  D-VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG-KPVGILTVGDIIRRYFAKSEKYK-- 124

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387
                     +  Y              +        +K  +  L       + VVD  G
Sbjct: 125 -------GVEIEPYY----------QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEG 167

Query: 388 NLEGVITLRDIISRL 402
           NL G++   D++   
Sbjct: 168 NLVGIVDETDLLRDS 182

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 28/142 (19%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM+ N  V +        A +L ++ K+   PVV K G K VG IS++ I       ++ 
Sbjct: 6   IMTQN-PVTITLPATRNYALELFKKYKVRSFPVVNKEG-KLVGIISVKRILVNPDEEQL- 62

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                +  ++              E+              T+K+   L+      R+ VV
Sbjct: 63  ---AMLVKRDVPVV---------KEND-------------TLKKAAKLMLEYDYRRVVVV 97

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           D  G   G++T+ DII R   +
Sbjct: 98  DSKGKPVGILTVGDIIRRYFAK 119

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 22/206 (10%)

Query: 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA 267
           L+ +Y  + + VVD  +G    I+T   +I                +K       P    
Sbjct: 85  LMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFAK---------SEKYKGVEIEPYYQR 134

Query: 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYR 327
             +  V+E  P+  A K +       +PVV+  G   VG +   D+        I     
Sbjct: 135 Y-VSIVWEGTPLKAALKALLLSNSMALPVVDSEG-NLVGIVDETDLLRDSEIVRIMKSTE 192

Query: 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGM----------VTCSRNHTIKELIHLLDSKKI 377
              +      +  +      +    L             +  + + T+ E+   +    I
Sbjct: 193 LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSI 252

Query: 378 HRIYVVDFNGNLEGVITLRDIISRLV 403
            ++ V+   G+L G+I   D++  LV
Sbjct: 253 EQLPVIRGEGDLIGLIRDFDLLKVLV 278

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 354 SGM----VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406
           + M    VT +   T    + L    K+    VV+  G L G+I+++ I+     E 
Sbjct: 5   TIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQ 61

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 22/147 (14%)

Query: 264 IM-SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
            +  A+ +  V     +  A  ++ +     IPV++    K  G IS+  +   +   E 
Sbjct: 16  FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY-KLHGLISMTMMMDAILGLER 74

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
               R  T K     V + M  +                + ++ + + L+ +     + V
Sbjct: 75  IEFERLETMK-----VEEVMNRNI----------PRLRLDDSLMKAVGLIVNHPF--VCV 117

Query: 383 VDFNGNLEGVITLRDII---SRLVHEP 406
            + +G   G+ T R+++   ++ +H P
Sbjct: 118 ENDDGYFAGIFTRREVLKQLNKQLHRP 144

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIM 265
           LL+L+K    +IPV+D     +  +I+ + ++  +     +E FE     K+ E    +M
Sbjct: 36  LLVLTKTGYSAIPVLD-TSYKLHGLISMTMMMDAILGLERIE-FERLETMKVEE----VM 89

Query: 266 SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           + N    +  D+ +++A  L+       + V    G    G  + R++
Sbjct: 90  NRNIPR-LRLDDSLMKAVGLIVNHPF--VCVENDDG-YFAGIFTRREV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 15/91 (16%)

Query: 325 DYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVD 384
           ++  +T K FL    K                      + +   + +L       I V+D
Sbjct: 7   EFMQMTVKPFLIPADKV---------------AHVQPGNYLDHALLVLTKTGYSAIPVLD 51

Query: 385 FNGNLEGVITLRDIISRLVHEPPGYFGDFFD 415
            +  L G+I++  ++  ++      F     
Sbjct: 52  TSYKLHGLISMTMMMDAILGLERIEFERLET 82

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 51  FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGI 110
           F  + V+ F  P  +V  ++    L  A+ +L +    + PV+D           +  G+
Sbjct: 8   FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS--------YKLHGL 59

Query: 111 V 111
           +
Sbjct: 60  I 60

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 75.8 bits (187), Expect = 8e-17
 Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 24/144 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK-GGNKAVGNISLRDIQFLLTAPEI 322
           ++     V + E   + +    + + ++G   +  +    + V  +S RDI   +     
Sbjct: 10  LLKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-- 66

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
                     +                    +  +T      +      +    I  + V
Sbjct: 67  ---------LDLDGPAMPIA-----------NSPITVLDTDPVHVAAEKMRRHNIRHVVV 106

Query: 383 VDFNGNLEGVITLRDIISRLVHEP 406
           V+ NG L GV+++RD+        
Sbjct: 107 VNKNGELVGVLSIRDLCFERAILL 130

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVV--DFNGNLEGVITLRDIISRLVHEPP 407
           V+     TI+E+   L   ++    +   D       V++ RDI+  +     
Sbjct: 16  VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD 68

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 65  QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIV 111
             + +    ++ E    LA++R+  A +   D P+      R + +V
Sbjct: 14  PPVSLPETATIREVATELAKNRVGLAVLTARDNPK------RPVAVV 54

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 75.8 bits (186), Expect = 2e-16
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 16/148 (10%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGN-KAVGNISLRDIQFLLTAPEI 322
            M+ + I  + +D P+ +  K++    +   P+VE   +   VG +    +   L A   
Sbjct: 18  FMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPP 76

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
                          ++  +      +       +T     T+ +  +L     +  ++V
Sbjct: 77  SRAPGH------QQCLQDILARGCPTEPV----TLTLFSETTLHQAQNLFKLLNLQSLFV 126

Query: 383 VDFNGNLEGVITLRDI---ISRLVHEPP 407
               G   G ++  ++   IS L + P 
Sbjct: 127 TS-RGRAVGCVSWVEMKKAISNLTNPPA 153

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 17/137 (12%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSV 236
           + +V              L K      ++ +++   +   P+V+  E   +  I+ ++ +
Sbjct: 12  HVRVEHFMNH----SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQL 67

Query: 237 IHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPV 296
           +  L +           +     +     +    + ++ +  + QA  L +   +  + V
Sbjct: 68  VQAL-QAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFV 126

Query: 297 VEKGGNKAVGNISLRDI 313
             +G  +AVG +S  ++
Sbjct: 127 TSRG--RAVGCVSWVEM 141

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 75.6 bits (186), Expect = 2e-16
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 22/146 (15%)

Query: 264 IM-SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
            M  A+ +  V     +  A  ++ +     IPV++    +  G I    I   +   E 
Sbjct: 19  FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY-RLHGLIGTNMIMNSIFGLER 77

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
               +          V + M             +     N  I +   ++ +     + V
Sbjct: 78  IEFEKLDQIT-----VEEVMLTD----------IPRLHINDPIMKGFGMVINNGF--VCV 120

Query: 383 VDFNGNLEGVITLRDII---SRLVHE 405
            +     EG+ T R ++   ++ +  
Sbjct: 121 ENDEQVFEGIFTRRVVLKELNKHIRS 146

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIM 265
           LL+L+K    +IPV+D     +  +I  + +++ +     +E+ E   +  + E    +M
Sbjct: 39  LLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLERIEF-EKLDQITVEE----VM 92

Query: 266 SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
             +    ++ ++P+++ F ++       + V         G  + R +
Sbjct: 93  LTDIPR-LHINDPIMKGFGMVINNGF--VCVENDEQ-VFEGIFTRRVV 136

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406
                 + ++  + +L       I V+D +  L G+I    I++ +    
Sbjct: 27  AHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLE 76

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 51  FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGI 110
                V  F     +V  ++   +L  A+ +L +    + PV+D           R  G+
Sbjct: 11  LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS--------YRLHGL 62

Query: 111 V 111
           +
Sbjct: 63  I 63

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 23/138 (16%)

Query: 265 MSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYH 324
           ++               A + +        PV++    + +G + L  +           
Sbjct: 10  LAETDYPVFTLGGSTADAARRLAASGCACAPVLDGE--RYLGMVHLSRL----------- 56

Query: 325 DYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVD 384
               +  +     V++ + E   E       + +      + + +  + + K   + + D
Sbjct: 57  ----LEGRKGWPTVKEKLGEELLET------VRSYRPGEQLFDNLISVAAAKCSVVPLAD 106

Query: 385 FNGNLEGVITLRDIISRL 402
            +G  EGV++ + I+  L
Sbjct: 107 EDGRYEGVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 15/123 (12%)

Query: 191 APFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE 250
             +       S       L+       PV+D        ++  S ++             
Sbjct: 13  TDYPVFTLGGSTADAARRLAASGCACAPVLD--GERYLGMVHLSRLLEGRK-------GW 63

Query: 251 SWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISL 310
              K+KL E     +    +      E +      +   K   +P+ ++ G +  G +S 
Sbjct: 64  PTVKEKLGE----ELLET-VRSYRPGEQLFDNLISVAAAKCSVVPLADEDG-RYEGVVSR 117

Query: 311 RDI 313
           + I
Sbjct: 118 KRI 120

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408
              +   +  +    L +       V+D      G++ L  ++      P  
Sbjct: 16  PVFTLGGSTADAARRLAASGCACAPVLD-GERYLGMVHLSRLLEGRKGWPTV 66

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 69.1 bits (169), Expect = 6e-14
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 14/158 (8%)

Query: 264 IMSANHI-----VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKA-VGNISLRDIQFLL 317
           +M          V   +   V     ++      G PVV    ++  VG +  RD+   +
Sbjct: 16  VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISI 75

Query: 318 TAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM----VTCSRNHTIKELIHLLD 373
                  D    T+  + T     +  +      L + +     T +    ++ ++ +  
Sbjct: 76  ENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFR 135

Query: 374 SKKIHRIYVVDFNGNLEGVITLRDI---ISRLVHEPPG 408
              + +  V   NG L G+IT +D+   I+++ ++ P 
Sbjct: 136 KLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQDPD 172

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 48.0 bits (114), Expect = 9e-07
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 174 EFYKNTKVRDIAGSFRWAPFL--ALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNI 230
           EF   T   D+    R  P L    Q S +   +  ++S+      PVV   E   +   
Sbjct: 6   EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGF 65

Query: 231 ITQSSVIHML-------------AECAGLEWFESWGKKKLSEIGL-PIMSANHIVKVYED 276
           + +  +I  +             +     E            + L  I+  +    V + 
Sbjct: 66  VLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-PFTVTDL 124

Query: 277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
            P+     + R+  +    V   G  + +G I+ +D+
Sbjct: 125 TPMEIVVDIFRKLGLRQCLVTHNG--RLLGIITKKDV 159

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 69.8 bits (172), Expect = 4e-13
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
           V V  ++ +    +L       G PVV +   + VG I+ RD++F               
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVTENN-ELVGIITGRDVRF--------------- 143

Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
             +   +V   M             + T     T  E+   +   ++ +I VV+    L+
Sbjct: 144 VTDLTKSVAAVMTPK--------ERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLK 195

Query: 391 GVITLRDI 398
           G+IT +D 
Sbjct: 196 GMITAKDF 203

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 354 SGMV----TCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI-----ISRLVH 404
           +G+V    T     TI +++ L          VV  N  L G+IT RD+     +++ V 
Sbjct: 93  AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKSVA 152

Query: 405 E 405
            
Sbjct: 153 A 153

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 69.4 bits (171), Expect = 5e-13
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 24/128 (18%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
           + V  D  V +A  LM   KIGG+PVV++ G + VG ++ RD++F               
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG-RLVGLLTNRDVRF--------------- 149

Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
            KN    ++  M             ++    + ++++   +L   +I ++ +V  +  L 
Sbjct: 150 EKNLSKKIKDLMTPR--------EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLV 201

Query: 391 GVITLRDI 398
           G+IT++DI
Sbjct: 202 GLITIKDI 209

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 43.6 bits (104), Expect = 8e-05
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 9/61 (14%)

Query: 354 SGMV----TCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI-----ISRLVH 404
           +G++    T + + T+KE I L+   KI  + VVD  G L G++T RD+     +S+ + 
Sbjct: 99  NGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLSKKIK 158

Query: 405 E 405
           +
Sbjct: 159 D 159

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 23/130 (17%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQFLLTAPEIYHDYRS 328
           V +     V    +   R    GIP+ E G  G+K VG ++ RDI F             
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF------------- 165

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
           +  K+  T + + M             +V      T+KE   +L   K  ++ +V+    
Sbjct: 166 LAEKDHTTLLSEVMTPR--------IELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDE 217

Query: 389 LEGVITLRDI 398
           L  +I   D+
Sbjct: 218 LVAIIARTDL 227

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 67.5 bits (166), Expect = 2e-12
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 25/129 (19%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEK-GGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
             +  +  V +A +LM+R +I G+P+VE     K VG I+ RD++F              
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF-------------- 146

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNL 389
              ++   + ++M             +VT +    ++    +L   +I ++ +VD +G L
Sbjct: 147 -ISDYNAPISEHMTS---------EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRL 196

Query: 390 EGVITLRDI 398
            G+IT++DI
Sbjct: 197 SGLITIKDI 205

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 17/108 (15%)

Query: 208 LLSKYKMKSIPVVD-LGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMS 266
           L+ +Y++  +P+V+ L    +  IIT   +            F S     +SE     M+
Sbjct: 115 LMQRYRISGVPIVETLANRKLVGIITNRDMR-----------FISDYNAPISEH----MT 159

Query: 267 ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
           + H+V       +  A +++   +I  +P+V+  G +  G I+++DI+
Sbjct: 160 SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIE 206

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 67.5 bits (166), Expect = 2e-12
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 29/128 (22%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
           + +  DE V  A  LM +  I G+PVVE    K VG I+ +DI                 
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVE--DEKVVGIITKKDIAAREGKL---------- 151

Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
                  V++ M +       +    +T   +  ++E + ++   +I R+ VVD  G L 
Sbjct: 152 -------VKELMTK------EV----ITVPESIEVEEALKIMIENRIDRLPVVDERGKLV 194

Query: 391 GVITLRDI 398
           G+IT+ D+
Sbjct: 195 GLITMSDL 202

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 67.2 bits (165), Expect = 3e-12
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 25/129 (19%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
             +  +  V  A  LM + +I G+PVV      K VG I+ RD++F              
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF-------------- 169

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNL 389
             +++   +   M +           ++T     T+ E   +L   KI ++ +VD NG L
Sbjct: 170 -IQDYSIKISDVMTK---------EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVL 219

Query: 390 EGVITLRDI 398
           +G+IT++DI
Sbjct: 220 QGLITIKDI 228

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 17/108 (15%)

Query: 208 LLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMS 266
           L+ KY++  +PVV+  +   +  IIT   +            F      K+S++    M+
Sbjct: 138 LMGKYRISGVPVVNNLDERKLVGIITNRDMR-----------FIQDYSIKISDV----MT 182

Query: 267 ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314
              ++       + +A K++++ KI  +P+V+  G    G I+++DI+
Sbjct: 183 KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG-VLQGLITIKDIE 229

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 66.4 bits (163), Expect = 5e-12
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQFLLTAPEIYHDYRS 328
             V  D+       + +R     + V + G      +G ++ RD                
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI------------- 154

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
                  T V   M           S +VT  ++  + E   ++  KK++ + ++D + +
Sbjct: 155 -DLTQTETKVSDMMTPF--------SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQH 205

Query: 389 LEGVITLRDIISRLVH 404
           L  ++  +D     V 
Sbjct: 206 LRYIVFRKDYDRSQVC 221

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 35/249 (14%), Positives = 76/249 (30%), Gaps = 26/249 (10%)

Query: 65  QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQS 124
           ++  +  + SL  A  I+    + S PV D +        +  +G++  + I    +   
Sbjct: 16  KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN--------NHLLGMLSTSNITATYMDIW 67

Query: 125 EPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDI 184
           +      S+ S              + ++       +               +      I
Sbjct: 68  DSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIA--I 125

Query: 185 AGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECA 244
           AG         ++   S L               +V  G      II  +   ++     
Sbjct: 126 AGDRAEIQAELIELKVSLL---------------IVTGGHTPSKEIIELAKKNNITVITT 170

Query: 245 GLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKA 304
             + F +      S     +M+ +++V V  D+ V      M   +    PV+++   K 
Sbjct: 171 PHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENN-KV 229

Query: 305 VGNISLRDI 313
           VG+I+   +
Sbjct: 230 VGSIARFHL 238

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 49.5 bits (117), Expect = 5e-07
 Identities = 37/245 (15%), Positives = 74/245 (30%), Gaps = 30/245 (12%)

Query: 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVI 237
             KV D+           L    S      ++    +KSIPV D G   +  +++ S++ 
Sbjct: 6   KLKVEDLEMD----KIAPLAPEVSLKMAWNIMRDKNLKSIPVAD-GNNHLLGMLSTSNIT 60

Query: 238 HMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVV 297
               +                +  L  +SA       E +       +   +       +
Sbjct: 61  ATYMDIWDSNILAKSATSL--DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFI 118

Query: 298 EKGGNKAVGNISLRDIQFLL---------------TAPEIYHDYRS------ITAKNFLT 336
            +G     G+    +IQ  L                + EI    +        T  +  T
Sbjct: 119 SEGDIAIAGDR--AEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFT 176

Query: 337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
           A R  ++    +       +V  S +  ++++   +   +     V+D N  + G I   
Sbjct: 177 ASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARF 236

Query: 397 DIISR 401
            +IS 
Sbjct: 237 HLIST 241

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 50/454 (11%), Positives = 128/454 (28%), Gaps = 125/454 (27%)

Query: 20  RSPEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAV 79
            SPE  L M ++ L   ++P  +              +       ++  I+     AE  
Sbjct: 193 NSPETVLEM-LQKLLYQIDPNWTS-----------RSDHSSNIKLRIHSIQ-----AELR 235

Query: 80  EILAQHR------ILSAPVVDVDAPEDASWID---------RYIGIVEF-AGIAVWILHQ 123
            +L          +L     +V   +  +  +         R+  + +F +      +  
Sbjct: 236 RLLKSKPYENCLLVLL----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 124 SEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESA--------SMTSGNFFEALTTSEF 175
                  +     +L             +DL P           S+ + +  + L T + 
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCR----PQDL-PREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSI-PV-VDLGEGTI----DN 229
           +K+     +           ++ S + L        +   S+ P    +    +     +
Sbjct: 347 WKHVNCDKLTT--------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 230 IITQSSVIHMLAECAGLEWFESWGKKKLSEI-GLPIMSANHIVKVYEDEP-----VLQAF 283
           +I    V+ ++ +       E   K+    I  + +     +    E+E      ++  +
Sbjct: 399 VIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL----ENEYALHRSIVDHY 453

Query: 284 KLMRRKKIGGIPVVEKGGN---------KAVGNISLRDIQFLLTAPEIYHDYRSITAK-- 332
            + +      +                 K + +   R   F      ++ D+R +  K  
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLF----RMVFLDFRFLEQKIR 508

Query: 333 -------------NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHR 379
                        N L  ++ Y + +  ++ P    +V          ++  L   + + 
Sbjct: 509 HDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLV--------NAILDFLPKIEEN- 558

Query: 380 IYVVDFNGNLEGVITLRDIISR-LVHEPPGYFGD 412
           +    +           D++   L+ E    F +
Sbjct: 559 LICSKY----------TDLLRIALMAEDEAIFEE 582

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/160 (12%), Positives = 55/160 (34%), Gaps = 30/160 (18%)

Query: 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLR 311
           W    ++E+ LP       V +  D  V +A  LM++ ++  +PVV++     +G +   
Sbjct: 381 WWSLAIAELELP----APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQE 436

Query: 312 DIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHL 371
            +   + +                    K + +           ++  + +  + +L  +
Sbjct: 437 TLITQIVSMNR----------QQSDPAIKALNKR----------VIRLNESEILGKLARV 476

Query: 372 LDSKKIHRIYVVD----FNGNLEGVITLRDIISRLVHEPP 407
           L+      + ++         L+ + T  D+ + +     
Sbjct: 477 LEVD--PSVLILGKNPAGKVELKALATKLDVTTFIAAGKQ 514

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 25/100 (25%)

Query: 259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318
            + +P++S+         + V +    +   ++GGI ++ K            D++  + 
Sbjct: 40  SLKIPLISS-------AMDTVTEHLMAVGMARLGGIGIIHKN----------MDMESQVN 82

Query: 319 APEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVT 358
                     +  KN+++ + K             +    
Sbjct: 83  E--------VLKVKNWISNLEKNESTPDQNLDKESTDGKD 114

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 356 MVTCSRNHTIKELIHLL-----DSKKIHRIYVVDFNGNLEGVITLRDII 399
            V+   N T++  +++L      ++ I+ +YVVD   +L GVI+LRD+I
Sbjct: 147 FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	99.91
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.9
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.89
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.89
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.85
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.85
4esy_A	170	CBS domain containing membrane protein; structural	99.82
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.8
4esy_A	170	CBS domain containing membrane protein; structural	99.8
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.79
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.79
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.78
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.76
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.76
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.75
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.75
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.75
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.74
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.74
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.74
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.73
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.72
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.72
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.71
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.71
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.71
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.71
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.71
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.71
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.71
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.7
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.7
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.7
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.7
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.69
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.69
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.69
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.69
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.69
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.69
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.69
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.69
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.69
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.68
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.68
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.68
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.68
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.67
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.67
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.67
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.67
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.67
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.67
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.67
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.66
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.66
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.66
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.66
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.66
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.66
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.66
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.65
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.65
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.65
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.65
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.64
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.64
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.64
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.64
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.64
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.64
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.63
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.63
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.63
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.62
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.62
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.62
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.61
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.61
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.61
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.6
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.6
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.6
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.59
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.58
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.57
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.57
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.57
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.53
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.5
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.5
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.49
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.49
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.47
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.47
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.39
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.38
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.38
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.36
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.33
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.31
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.3
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.26
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.25
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.25
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.23
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.16
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.12
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.11
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.09
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.95
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.9
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.79
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.7
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.6

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=2.8e-34  Score=271.21  Aligned_cols=269  Identities=18%  Similarity=0.317  Sum_probs=210.8

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      |+++++++++++|+.+|+++|.+++++++||+|++.       ++++|++|..||+.++.....                
T Consensus        10 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~-------~~~~Givt~~di~~~~~~~~~----------------   66 (280)
T 3kh5_A           10 QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN-------NKVVGIITSMDIVDFMGGGSK----------------   66 (280)
T ss_dssp             CCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTT-------CBEEEEEEHHHHHHHTTTSGG----------------
T ss_pred             cCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCC-------CeEEEEEEHHHHHHHhcccch----------------
Confidence            677999999999999999999999999999999732       899999999999986532110                


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD  221 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd  221 (426)
                       .++        +....    .+.++       .....+++++|.+    +++++.+++++.+++..|.+++++++||+|
T Consensus        67 -~~~--------~~~~~----~~~~~-------~~~~~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd  122 (280)
T 3kh5_A           67 -YNL--------IREKH----ERNFL-------AAINEPVREIMEE----NVITLKENADIDEAIETFLTKNVGGAPIVN  122 (280)
T ss_dssp             -GHH--------HHTTS----TTCHH-------HHTTSBGGGTSBC----SCCCEETTCBHHHHHHHHHHTTCSEEEEEC
T ss_pred             -hhh--------hhhcc----ccchh-------HHhhhhHHHhcCC----CCEEECCCCCHHHHHHHHHhCCCCEEEEEc
Confidence             000        00000    00011       1224689999987    888999999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC
Q 014353          222 LGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG  301 (426)
Q Consensus       222 ~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~  301 (426)
                       ++++++|++|..|+++.+......       ..++.+    +|.++ ++++.+++++.++++.|.+++++++||+ ++|
T Consensus       123 -~~~~~~Givt~~dl~~~~~~~~~~-------~~~v~~----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~  188 (280)
T 3kh5_A          123 -DENQLISLITERDVIRALLDKIDE-------NEVIDD----YITRD-VIVATPGERLKDVARTMVRNGFRRLPVV-SEG  188 (280)
T ss_dssp             -TTCBEEEEEEHHHHHHHHGGGSCT-------TCBSGG----GCBCS-CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT
T ss_pred             -CCCEEEEEEEHHHHHHHHhhcCCC-------CCCHHH----HhCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC
Confidence             479999999999999987644221       236676    78764 8999999999999999999999999999 456


Q ss_pred             CeEEEEEeHHHHHHHhhCCccccccccccHHH-HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEE
Q 014353          302 NKAVGNISLRDIQFLLTAPEIYHDYRSITAKN-FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRI  380 (426)
Q Consensus       302 ~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l  380 (426)
                       +++|+||.+|+++.+..+..+..+......+ ...++.+          +|.+++.+|++++++.+|++.|.+++++++
T Consensus       189 -~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l  257 (280)
T 3kh5_A          189 -RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEE----------IMKRDVITAKEGDKLKKIAEIMVTNDIGAL  257 (280)
T ss_dssp             -EEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHH----------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEE
T ss_pred             -EEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHH----------HhcCCCEEECCCCCHHHHHHHHHHCCCCEE
Confidence             9999999999999875432221111111011 1223444          445589999999999999999999999999


Q ss_pred             EEEcCCCcEEEEEeHHHHHHHH
Q 014353          381 YVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       381 ~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                      ||+|++|+++|+||.+||++++
T Consensus       258 ~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          258 PVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             EEECTTCBEEEEEEHHHHGGGG
T ss_pred             EEECCCCeEEEEEeHHHHHHhh
Confidence            9999989999999999999875

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=4.7e-34  Score=275.76  Aligned_cols=288  Identities=18%  Similarity=0.356  Sum_probs=221.1

Q ss_pred             HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353           47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP  126 (426)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~  126 (426)
                      +...+....|+++.+.+.++++++.++|+.+|+++|.+++++++||+|++.       ++++|++|..|++.++......
T Consensus        23 i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~-------~~lvGilt~~Dl~~~l~~~~~~   95 (323)
T 3t4n_C           23 IRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT-------SRFAGLLTTTDFINVIQYYFSN   95 (323)
T ss_dssp             HHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCC-------CeEEEEEEHHHHHHHHHHHHcC
Confidence            445556777888766677999999999999999999999999999999874       6999999999999887643211


Q ss_pred             CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhh------hccccccCCcEEecCCC
Q 014353          127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD------IAGSFRWAPFLALQKSN  200 (426)
Q Consensus       127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~------i~~~~~~~~~~~v~~~~  200 (426)
                      ..                                     ....   ........+.+      +|..    +++++.+++
T Consensus        96 ~~-------------------------------------~~~~---l~~~~~~~v~~i~~~~~~~~~----~~v~v~~~~  131 (323)
T 3t4n_C           96 PD-------------------------------------KFEL---VDKLQLDGLKDIERALGVDQL----DTASIHPSR  131 (323)
T ss_dssp             GG-------------------------------------GGGG---GGGCBHHHHHHHHHHTTC--------CCCBCTTS
T ss_pred             cc-------------------------------------hhHH---HHHHHHHHHHHHHHHhCCCCC----CceEeCCCC
Confidence            00                                     0000   00111122333      3344    788999999


Q ss_pred             CHHHHHHHHhhcCCcEeEEEeCCCCe-----EEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCC
Q 014353          201 SFLTMLLLLSKYKMKSIPVVDLGEGT-----IDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYE  275 (426)
Q Consensus       201 ~l~~~l~~l~~~~~~~ipVvd~~~~~-----l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~  275 (426)
                      ++.+++..|.+++++++||+|. ++.     ++|++|..|+++++......   ..+...++.+++. .|..+ ++++.+
T Consensus       132 ~l~~a~~~m~~~~~~~lpVvd~-~~~~~~~~l~Givt~~di~~~l~~~~~~---~~~~~~~v~~~~~-~m~~~-~~~v~~  205 (323)
T 3t4n_C          132 PLFEACLKMLESRSGRIPLIDQ-DEETHREIVVSVLTQYRILKFVALNCRE---THFLKIPIGDLNI-ITQDN-MKSCQM  205 (323)
T ss_dssp             BHHHHHHHHHHHTCSEEEEEEE-CTTTCCEEEEEEEEHHHHHHHHHHHCGG---GGGCCSBGGGTTC-SBCTT-CCCBCT
T ss_pred             cHHHHHHHHHhCCeeEEEEEec-CCCCCccceEEEecHHHHHHHHHhcCCc---hhhhhCcHHHcCC-CCCCC-cEEECC
Confidence            9999999999999999999994 453     99999999999998644221   2233457777321 26654 999999


Q ss_pred             CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCC
Q 014353          276 DEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSG  355 (426)
Q Consensus       276 ~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  355 (426)
                      ++++.++++.|.+++++++||+|++| +++|+||.+|+++++..+. +        ..+..++.++|....    ...++
T Consensus       206 ~~~~~~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~~~-~--------~~~~~~v~~~m~~~~----~~~~~  271 (323)
T 3t4n_C          206 TTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGI-Y--------NDLSLSVGEALMRRS----DDFEG  271 (323)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETTHHHHHHHTTH-H--------HHTTSBHHHHGGGSC----TTCCC
T ss_pred             CCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHhhch-h--------hhccCCHHHHHhhcc----ccCCC
Confidence            99999999999999999999999988 9999999999999875431 1        112234566665410    00126


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       356 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      +++|++++++.+++++|.+++++++||+|++|+++|+||.+||+++++++
T Consensus       272 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          272 VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             CEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             CEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999876

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=1.4e-33  Score=269.12  Aligned_cols=273  Identities=17%  Similarity=0.272  Sum_probs=220.3

Q ss_pred             hhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCC
Q 014353           48 NACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPP  127 (426)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~  127 (426)
                      .+.+...+++++  |+++++++++++|+.+|+++|.+++++++||+| +         +++|++|..||+.++.......
T Consensus        14 ~~~~~~~~V~di--m~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~---------~l~GivT~~Di~~~~~~~~~~~   81 (296)
T 3ddj_A           14 NLYFQGMNIETL--MIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E---------KIEGLLTTRDLLSTVESYCKDS   81 (296)
T ss_dssp             CCTTCCSSGGGT--CEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S---------SEEEEEEHHHHHGGGTTCC---
T ss_pred             hhhhcccCHHHh--ccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-C---------eEEEEEeHHHHHHHhccccccc
Confidence            455678899998  989999999999999999999999999999998 4         7999999999987654221000


Q ss_pred             CCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHH
Q 014353          128 SPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLL  207 (426)
Q Consensus       128 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~  207 (426)
                                                       ...+.++       .....+++++|.+    +++++.+++++.+++.
T Consensus        82 ---------------------------------~~~~~~~-------~~~~~~v~~im~~----~~~~v~~~~~~~~a~~  117 (296)
T 3ddj_A           82 ---------------------------------CSQGDLY-------HISTTPIIDYMTP----NPVTVYNTSDEFTAIN  117 (296)
T ss_dssp             ---------------------------------CCHHHHH-------HHHTSBGGGTSEE----SCCCEETTSCHHHHHH
T ss_pred             ---------------------------------ccchhhH-------HHhcccHHHhccC----CCEEEcCCCCHHHHHH
Confidence                                             0000111       1235679999987    8889999999999999


Q ss_pred             HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHH
Q 014353          208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMR  287 (426)
Q Consensus       208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~  287 (426)
                      .|.+++++++||+| ++++++|++|..|++..+....        ...++.+    +|.++ ++++.+++++.++++.|.
T Consensus       118 ~m~~~~~~~lpVvd-~~~~lvGivt~~dl~~~~~~~~--------~~~~v~~----~m~~~-~~~v~~~~~l~~~~~~m~  183 (296)
T 3ddj_A          118 IMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKDLD--------EIFPVKV----FMSTK-VQTIYKEVRLDQAVKLML  183 (296)
T ss_dssp             HHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGGGSC--------CCCBHHH----HSBCS-CCCEETTSBHHHHHHHHH
T ss_pred             HHHHcCCCEEEEEc-CCCcEEEEEeHHHHHHhhhccc--------ccccHHH----hhcCC-CeEECCCCCHHHHHHHHH
Confidence            99999999999999 4799999999999988764332        1346777    77764 899999999999999999


Q ss_pred             hcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHH
Q 014353          288 RKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKE  367 (426)
Q Consensus       288 ~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~  367 (426)
                      +++++++||+|++| +++|+||.+|+++.+...  +..+..  ......++.          ++|.+++.+|.+++++.+
T Consensus       184 ~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~--~~~~~~--~~~~~~~v~----------~~m~~~~~~v~~~~~l~~  248 (296)
T 3ddj_A          184 RRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKA--VDKLDP--DYFYGKVVK----------DVMVTNLVTIDELASVNR  248 (296)
T ss_dssp             HHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHH--HHHTCT--HHHHTCBHH----------HHSBCCCCBCCTTSBHHH
T ss_pred             HcCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHH--HhhcCh--hhhcCcCHH----------HHhCCCCeEECCCCcHHH
Confidence            99999999999888 999999999999886421  110000  000112233          445558999999999999


Q ss_pred             HHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          368 LIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       368 ~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      |+++|.+++++++||+|++|+++|+||.+||++++.++
T Consensus       249 a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          249 AAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  286 (296)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=2.3e-32  Score=264.78  Aligned_cols=300  Identities=19%  Similarity=0.308  Sum_probs=229.1

Q ss_pred             HHHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhc
Q 014353           45 EKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQS  124 (426)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~  124 (426)
                      +.++..+...+++++...+++++++++++|+.+|+++|.+++++++||+|++.       ++++|+|+..|++..+....
T Consensus        26 ~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~-------~~~vGivt~~Dll~~l~~~~   98 (330)
T 2v8q_E           26 SVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFINILHRYY   98 (330)
T ss_dssp             CHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC-------CeEEEEEEHHHHHHHHHHHH
Confidence            34888899999999933389999999999999999999999999999999874       68999999999998765421


Q ss_pred             CCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHH
Q 014353          125 EPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLT  204 (426)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~  204 (426)
                      ....              ...      ..+.    ......          + ...++++|..    +++++.+++++.+
T Consensus        99 ~~~~--------------~~~------~~l~----~~~~~~----------~-~~~~~~im~~----~~~~v~~~~~~~~  139 (330)
T 2v8q_E           99 KSAL--------------VQI------YELE----EHKIET----------W-REVYLQDSFK----PLVCISPNASLFD  139 (330)
T ss_dssp             HHHT--------------TTC------CCGG----GCBHHH----------H-HHHHSSSSCC----CCCCBCTTSBHHH
T ss_pred             hccc--------------cch------hHHh----hccHHH----------H-HHHHhhcccC----CceEeCCCCCHHH
Confidence            0000              000      0000    000000          0 1134566776    8889999999999


Q ss_pred             HHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHH
Q 014353          205 MLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFK  284 (426)
Q Consensus       205 ~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~  284 (426)
                      ++..|.+++++++||+|.++++++|++|..|+++++...........+...++.++.  +|...+++++.+++++.++++
T Consensus       140 a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~--v~~~~~~~~v~~~~~l~~~~~  217 (330)
T 2v8q_E          140 AVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQ--IGTYANIAMVRTTTPVYVALG  217 (330)
T ss_dssp             HHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHT--CSBCSSCCCEETTCBHHHHHH
T ss_pred             HHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhc--ccCcCCceEECCCCCHHHHHH
Confidence            999999999999999993268999999999999988654221111223344555532  354234899999999999999


Q ss_pred             HHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCC
Q 014353          285 LMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHT  364 (426)
Q Consensus       285 ~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~t  364 (426)
                      .|.+++++++||+|++| +++|+||.+|+++.+.... +...        ..++.+++..    ...|.+++.+|+++++
T Consensus       218 ~m~~~~~~~~~Vvd~~~-~l~Giit~~dl~~~~~~~~-~~~~--------~~~v~~~~~~----~~~~~~~~~~v~~~~~  283 (330)
T 2v8q_E          218 IFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAEKT-YNNL--------DVSVTKALQH----RSHYFEGVLKCYLHET  283 (330)
T ss_dssp             HHHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGSSC-CCCC--------SSBHHHHGGG----CCSCCCSCCEECTTSB
T ss_pred             HHHHcCCCeEEEECCCC-cEEEEEEHHHHHHHHhccc-cccc--------cCcHHHHHhc----cccccCCCeEECCCCc
Confidence            99999999999999887 9999999999998875432 1111        1235555542    1345668999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          365 IKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       365 l~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                      +.+++++|.+++++++||+|++|+++|+||.+||++++..+.
T Consensus       284 l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          284 LEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  325 (330)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence            999999999999999999998899999999999999998653

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=3e-31  Score=257.27  Aligned_cols=295  Identities=20%  Similarity=0.344  Sum_probs=220.2

Q ss_pred             HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353           47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP  126 (426)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~  126 (426)
                      +...++..+++++.....+++++++++|+.+|++.|.+++++++||+|++.       ++++|+|+..||+.++......
T Consensus        15 ~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~~~~~   87 (334)
T 2qrd_G           15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYYYQS   87 (334)
T ss_dssp             HHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHHHhhc
Confidence            556667799999833356799999999999999999999999999999864       7999999999999876543110


Q ss_pred             CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccch----hhhccccccCCc--EEecCCC
Q 014353          127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKV----RDIAGSFRWAPF--LALQKSN  200 (426)
Q Consensus       127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v----~~i~~~~~~~~~--~~v~~~~  200 (426)
                      ..               .      ..             .+..   ........+    +++|..    ++  +++.+++
T Consensus        88 ~~---------------~------~~-------------~~~~---~~~~~~~~i~~~l~~im~~----~~~~~~v~~~~  126 (334)
T 2qrd_G           88 SS---------------F------PE-------------AIAE---IDKFRLLGLREVERKIGAI----PPETIYVHPMH  126 (334)
T ss_dssp             CS---------------C------GG-------------GGGG---GGSCBHHHHHHHHHHHTCS----CSSCCCBCTTS
T ss_pred             cC---------------C------cc-------------HHHH---HhhhchhhHHHHHHhhccC----CCceeeeCCCC
Confidence            00               0      00             0000   000000112    234543    55  8899999


Q ss_pred             CHHHHHHHHhhcCCcEeEEEeCCCCe----EEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCC
Q 014353          201 SFLTMLLLLSKYKMKSIPVVDLGEGT----IDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED  276 (426)
Q Consensus       201 ~l~~~l~~l~~~~~~~ipVvd~~~~~----l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~  276 (426)
                      ++.+++..|.+++++++||+|.++++    ++|++|..|+++++......   ......++.++.. +|..+ ++++.++
T Consensus       127 ~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~---~~~~~~~v~~l~~-~m~~~-~~~v~~~  201 (334)
T 2qrd_G          127 SLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE---TAMLRVPLNQMTI-GTWSN-LATASME  201 (334)
T ss_dssp             BHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG---GGGCCCBGGGSSC-SBCSS-CCCBCTT
T ss_pred             cHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc---hhhhhCcHHHhCC-cccCC-ceEECCC
Confidence            99999999999999999999843234    99999999999988643110   0122355666321 36654 8999999


Q ss_pred             CcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCc
Q 014353          277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM  356 (426)
Q Consensus       277 ~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  356 (426)
                      +++.++++.|.+++++++||+|++| +++|+||.+|+++.+..+. +.        ....++.++|...  ..+.  +++
T Consensus       202 ~~~~~~~~~m~~~~~~~~~Vvd~~~-~~~Giit~~dl~~~~~~~~-~~--------~~~~~v~~~m~~~--~~~~--~~~  267 (334)
T 2qrd_G          202 TKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGD-YS--------NLDLSVGEALLKR--PANF--DGV  267 (334)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETHHHHHHHTTSC-GG--------GGGSBHHHHHTTC--CTTC--CCC
T ss_pred             CcHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEHHHHHHHhhccc-cc--------cccCcHHHHHhcc--cccC--CCC
Confidence            9999999999999999999999887 9999999999999875432 11        1122355555420  0000  378


Q ss_pred             eeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       357 ~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                      .+|++++++.+++++|.+++++++||+|++|+++|+||.+||++++..+...
T Consensus       268 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~~  319 (334)
T 2qrd_G          268 HTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT  319 (334)
T ss_dssp             CEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC-
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcccc
Confidence            9999999999999999999999999999889999999999999999877653

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=6.5e-33  Score=262.33  Aligned_cols=262  Identities=17%  Similarity=0.263  Sum_probs=187.9

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      |.++++++++++|+.+|+++|.++++.++||+|++        |+++|+++..|++..+.                    
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~--------~~~~Giv~~~dl~~~~~--------------------   58 (282)
T 2yzq_A            7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE--------GKLVGIISVKRILVNPD--------------------   58 (282)
T ss_dssp             SEESCCCEESSCC------------CCEEEEECTT--------CCEEEEEESSCC-------------------------
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhhhc--------------------
Confidence            67788999999999999999999999999999986        89999999999974311                    


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD  221 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd  221 (426)
                                                          ..+++++|.+    ++.++.+++++.+++..|.+++++++||+|
T Consensus        59 ------------------------------------~~~v~~~m~~----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd   98 (282)
T 2yzq_A           59 ------------------------------------EEQLAMLVKR----DVPVVKENDTLKKAAKLMLEYDYRRVVVVD   98 (282)
T ss_dssp             -----------------------------------------CCCBS----CCCEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ------------------------------------cCCHHHHcCC----CCcEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence                                                2356777775    678999999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHHHH-HHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC
Q 014353          222 LGEGTIDNIITQSSVIH-MLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG  300 (426)
Q Consensus       222 ~~~~~l~Giis~~Dl~~-~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~  300 (426)
                      . +++++|++|..|+++ .+....      .....++.+    +|..+ ++++.+++++.++++.|.+++++++||+|++
T Consensus        99 ~-~~~~~Giit~~di~~~~~~~~~------~~~~~~v~~----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~  166 (282)
T 2yzq_A           99 S-KGKPVGILTVGDIIRRYFAKSE------KYKGVEIEP----YYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDSE  166 (282)
T ss_dssp             T-TSCEEEEEEHHHHHHHTTTTCS------GGGGCBSTT----TSBSC-CCCEETTSBHHHHHHHHHTCSSSEEEEECTT
T ss_pred             C-CCEEEEEEEHHHHHHHHHhccC------CcccCcHHH----HhCCC-CEEECCCCCHHHHHHHHHHcCCcEEEEEcCC
Confidence            4 689999999999998 665321      112345666    78764 8999999999999999999999999999988


Q ss_pred             CCeEEEEEeHHHHH------HHhhCCcc--cc---ccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHH
Q 014353          301 GNKAVGNISLRDIQ------FLLTAPEI--YH---DYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELI  369 (426)
Q Consensus       301 ~~~lvGiIs~~Dl~------~~~~~~~~--~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~  369 (426)
                      | +++|+||.+|++      +++.....  ..   .........+..... ......++.++|.+++.+|++++++.+|+
T Consensus       167 ~-~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~im~~~~~~v~~~~~l~~a~  244 (282)
T 2yzq_A          167 G-NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFE-LQLPNKPVAEIMTRDVIVATPHMTVHEVA  244 (282)
T ss_dssp             S-CEEEEEEGGGGGGCGGGCC---------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHH
T ss_pred             C-eEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhh-hhhccCCHHHhcCCCCceeCCCCCHHHHH
Confidence            7 999999999998      33210000  00   000000000000000 00112367788999999999999999999


Q ss_pred             HHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          370 HLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       370 ~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      ++|.+++++++||+|++|+++|+||.+||++++..+
T Consensus       245 ~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~~  280 (282)
T 2yzq_A          245 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVKS  280 (282)
T ss_dssp             HHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC-
T ss_pred             HHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHhh
Confidence            999999999999999888999999999999987654

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=9.7e-24  Score=200.87  Aligned_cols=193  Identities=21%  Similarity=0.284  Sum_probs=163.7

Q ss_pred             cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      ..+++++  |+++++++.+++++.+|+++|.+++++.+||+|++        ++++|++|..|++..+...         
T Consensus        92 ~~~v~~i--m~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------~~lvGivt~~dl~~~~~~~---------  152 (296)
T 3ddj_A           92 TTPIIDY--MTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN--------DKPVGIVTEREFLLLYKDL---------  152 (296)
T ss_dssp             TSBGGGT--SEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHGGGGGGS---------
T ss_pred             cccHHHh--ccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHhhhcc---------
Confidence            5678888  88899999999999999999999999999999987        8999999999997543211         


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                                                                 ....++.++|..    ++.++.+++++.+++..|.++
T Consensus       153 -------------------------------------------~~~~~v~~~m~~----~~~~v~~~~~l~~~~~~m~~~  185 (296)
T 3ddj_A          153 -------------------------------------------DEIFPVKVFMST----KVQTIYKEVRLDQAVKLMLRR  185 (296)
T ss_dssp             -------------------------------------------CCCCBHHHHSBC----SCCCEETTSBHHHHHHHHHHH
T ss_pred             -------------------------------------------cccccHHHhhcC----CCeEECCCCCHHHHHHHHHHc
Confidence                                                       123478899986    888999999999999999999


Q ss_pred             CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCC
Q 014353          213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIG  292 (426)
Q Consensus       213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~  292 (426)
                      +++++||+| ++++++|++|..|+++.+...............++.+    +|+++ ++++.+++++.++++.|.+++++
T Consensus       186 ~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~----~m~~~-~~~v~~~~~l~~a~~~m~~~~~~  259 (296)
T 3ddj_A          186 GFRRLPVID-DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD----VMVTN-LVTIDELASVNRAAAEMIVKRIG  259 (296)
T ss_dssp             TCSEEEEEC-TTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH----HSBCC-CCBCCTTSBHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEc-CCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHH----HhCCC-CeEECCCCcHHHHHHHHHHcCCC
Confidence            999999999 4899999999999999886321100001123456777    78764 99999999999999999999999


Q ss_pred             eeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          293 GIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       293 ~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      ++||+|++| +++|+||.+||++++.
T Consensus       260 ~l~Vvd~~g-~~~Giit~~Dil~~l~  284 (296)
T 3ddj_A          260 SLLILNKDN-TIRGIITERDLLIALH  284 (296)
T ss_dssp             EEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             EEEEECCCC-eEEEEEcHHHHHHHHH
Confidence            999999888 9999999999999974

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.90  E-value=1.1e-22  Score=191.60  Aligned_cols=184  Identities=21%  Similarity=0.355  Sum_probs=154.4

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcch--------hhhhccccccccccC
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEW--------FESWGKKKLSEIGLP  263 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~--------~~~~~~~~v~~~~~~  263 (426)
                      +++++.+++++.++++.|.+++++++||+|.++++++|++|..|++.++........        +......++++    
T Consensus        13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----   88 (280)
T 3kh5_A           13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVRE----   88 (280)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGG----
T ss_pred             CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHH----
Confidence            889999999999999999999999999999547999999999999998743221111        11122456777    


Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|.++ ++++.+++++.++++.|.+++++++||+|++| +++|++|.+|+++.+.....                     
T Consensus        89 im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~---------------------  145 (280)
T 3kh5_A           89 IMEEN-VITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITERDVIRALLDKID---------------------  145 (280)
T ss_dssp             TSBCS-CCCEETTCBHHHHHHHHHHTTCSEEEEECTTC-BEEEEEEHHHHHHHHGGGSC---------------------
T ss_pred             hcCCC-CEEECCCCCHHHHHHHHHhCCCCEEEEEcCCC-EEEEEEEHHHHHHHHhhcCC---------------------
Confidence            88874 99999999999999999999999999999988 99999999999988643210                     


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                      ....+.++|.+++.++++++++.++++.|.+++++++||+ ++|+++|+||.+|+++.+.
T Consensus       146 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          146 ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred             CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence            0114556667799999999999999999999999999999 5799999999999999985

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.89  E-value=2.1e-22  Score=194.04  Aligned_cols=193  Identities=15%  Similarity=0.245  Sum_probs=155.7

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      |+++++++++++++.+|++.|.+++++.+||+|++.....   ++++|++|..|++.++.....                
T Consensus       120 ~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~---~~l~Givt~~di~~~l~~~~~----------------  180 (323)
T 3t4n_C          120 DQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR---EIVVSVLTQYRILKFVALNCR----------------  180 (323)
T ss_dssp             ----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCC---EEEEEEEEHHHHHHHHHHHCG----------------
T ss_pred             CCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCc---cceEEEecHHHHHHHHHhcCC----------------
Confidence            6789999999999999999999999999999998721100   139999999999988764421                


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhh---ccccccCCcEEecCCCCHHHHHHHHhhcCCcEeE
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDI---AGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIP  218 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i---~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ip  218 (426)
                                                     ...+...++.++   |..    ++.++.+++++.+++..|.+++++++|
T Consensus       181 -------------------------------~~~~~~~~v~~~~~~m~~----~~~~v~~~~~~~~~~~~m~~~~~~~~p  225 (323)
T 3t4n_C          181 -------------------------------ETHFLKIPIGDLNIITQD----NMKSCQMTTPVIDVIQMLTQGRVSSVP  225 (323)
T ss_dssp             -------------------------------GGGGCCSBGGGTTCSBCT----TCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred             -------------------------------chhhhhCcHHHcCCCCCC----CcEEECCCCcHHHHHHHHHHcCCCEEE
Confidence                                           012234567888   765    888999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccC-----CeeEeCCCCcHHHHHHHHHhcCCCe
Q 014353          219 VVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSAN-----HIVKVYEDEPVLQAFKLMRRKKIGG  293 (426)
Q Consensus       219 Vvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~  293 (426)
                      |+| ++|+++|++|..|+++++.....     .....++.+    +|++.     +++++.+++++.++++.|.++++++
T Consensus       226 Vvd-~~~~~~Giit~~dl~~~~~~~~~-----~~~~~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~  295 (323)
T 3t4n_C          226 IID-ENGYLINVYEAYDVLGLIKGGIY-----NDLSLSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHR  295 (323)
T ss_dssp             EEC-TTCBEEEEEETTHHHHHHHTTHH-----HHTTSBHHH----HGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCE
T ss_pred             EEC-CCCeEEEEEeHHHHHHHHhhchh-----hhccCCHHH----HHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCE
Confidence            999 47999999999999998864311     111346677    66652     4899999999999999999999999


Q ss_pred             eEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          294 IPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       294 lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                      +||+|++| +++|+||.+||++++..
T Consensus       296 l~Vvd~~~-~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          296 FFVVDDVG-RLVGVLTLSDILKYILL  320 (323)
T ss_dssp             EEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred             EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence            99999888 99999999999998753

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.89  E-value=1.6e-22  Score=190.86  Aligned_cols=201  Identities=18%  Similarity=0.248  Sum_probs=153.9

Q ss_pred             HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHH-HHHhhcC
Q 014353           47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAV-WILHQSE  125 (426)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~-~l~~~~~  125 (426)
                      +.+.+...++.++  |.++++++++++++.+|++.|.++++..+||+|++        |+++|++|..|+++ ++...  
T Consensus        53 l~~~~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~--------~~~~Giit~~di~~~~~~~~--  120 (282)
T 2yzq_A           53 ILVNPDEEQLAML--VKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK--------GKPVGILTVGDIIRRYFAKS--  120 (282)
T ss_dssp             C----------CC--CBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHTTTTC--
T ss_pred             HHhhhccCCHHHH--cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhcc--
Confidence            3344556778887  77789999999999999999999999999999998        89999999999986 42210  


Q ss_pred             CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353          126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM  205 (426)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~  205 (426)
                                                                      ......+++++|..    ++.++.+++++.++
T Consensus       121 ------------------------------------------------~~~~~~~v~~~m~~----~~~~v~~~~~l~~~  148 (282)
T 2yzq_A          121 ------------------------------------------------EKYKGVEIEPYYQR----YVSIVWEGTPLKAA  148 (282)
T ss_dssp             ------------------------------------------------SGGGGCBSTTTSBS----CCCCEETTSBHHHH
T ss_pred             ------------------------------------------------CCcccCcHHHHhCC----CCEEECCCCCHHHH
Confidence                                                            01123467788876    78899999999999


Q ss_pred             HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHH------HHHHh------c-------cC-cch----hhhhccccccccc
Q 014353          206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVI------HMLAE------C-------AG-LEW----FESWGKKKLSEIG  261 (426)
Q Consensus       206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~------~~l~~------~-------~~-~~~----~~~~~~~~v~~~~  261 (426)
                      +..|.+++++++||+| ++++++|++|..|++      +++..      .       .. ...    .......++++  
T Consensus       149 ~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--  225 (282)
T 2yzq_A          149 LKALLLSNSMALPVVD-SEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--  225 (282)
T ss_dssp             HHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGG--
T ss_pred             HHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--
Confidence            9999999999999999 478999999999998      44420      0       00 000    01122456666  


Q ss_pred             cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       262 ~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                        +|+++ ++++.+++++.+|+++|.+++++++||+|++| +++|+||++||++++.
T Consensus       226 --im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          226 --IMTRD-VIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             --TCBSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT-EEEEEEEHHHHGGGGC
T ss_pred             --hcCCC-CceeCCCCCHHHHHHHHHHcCcceeEEECCCC-CEEEEEeHHHHHHHHH
Confidence              88875 99999999999999999999999999999877 9999999999998864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.85  E-value=1e-20  Score=182.85  Aligned_cols=190  Identities=18%  Similarity=0.254  Sum_probs=153.6

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeec-CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHH
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDV-DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAA  140 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~-~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~  140 (426)
                      |.++++++++++++.+|+++|.+++++.+||+|+ +        |+++|+||..|+++++........            
T Consensus       124 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~~Givt~~dl~~~~~~~~~~~~------------  183 (330)
T 2v8q_E          124 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES--------GNTLYILTHKRILKFLKLFITEFP------------  183 (330)
T ss_dssp             SCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT--------CCEEEEECHHHHHHHHHHHSCSSS------------
T ss_pred             ccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC--------CcEEEEEcHHHHHHHHHHHhhccC------------
Confidence            6789999999999999999999999999999998 6        899999999999988754321100            


Q ss_pred             hhhcCccccccccCCCCcccccccchhhcccccccccccchhhh--cc-ccccCCcEEecCCCCHHHHHHHHhhcCCcEe
Q 014353          141 AVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDI--AG-SFRWAPFLALQKSNSFLTMLLLLSKYKMKSI  217 (426)
Q Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i--~~-~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~i  217 (426)
                                                      ...+...++.++  |. .    ++.++.+++++.+++..|.+++++++
T Consensus       184 --------------------------------~~~~~~~~v~~~~v~~~~----~~~~v~~~~~l~~~~~~m~~~~~~~~  227 (330)
T 2v8q_E          184 --------------------------------KPEFMSKSLEELQIGTYA----NIAMVRTTTPVYVALGIFVQHRVSAL  227 (330)
T ss_dssp             --------------------------------CCGGGGSBHHHHTCSBCS----SCCCEETTCBHHHHHHHHHHHCCSEE
T ss_pred             --------------------------------chhhhcCCHHHhcccCcC----CceEECCCCCHHHHHHHHHHcCCCeE
Confidence                                            001122345555  33 3    77889999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCc------ccCCeeEeCCCCcHHHHHHHHHhcCC
Q 014353          218 PVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIM------SANHIVKVYEDEPVLQAFKLMRRKKI  291 (426)
Q Consensus       218 pVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im------~~~~~~~v~~~~~v~~a~~~m~~~~~  291 (426)
                      ||+| ++++++|++|..|+++.+.......     ...++.+    +|      .. +++++.+++++.++++.|.++++
T Consensus       228 ~Vvd-~~~~l~Giit~~dl~~~~~~~~~~~-----~~~~v~~----~~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~  296 (330)
T 2v8q_E          228 PVVD-EKGRVVDIYSKFDVINLAAEKTYNN-----LDVSVTK----ALQHRSHYFE-GVLKCYLHETLEAIINRLVEAEV  296 (330)
T ss_dssp             EEEC-TTSBEEEEEEGGGTGGGGGSSCCCC-----CSSBHHH----HGGGCCSCCC-SCCEECTTSBHHHHHHHHHHHTC
T ss_pred             EEEC-CCCcEEEEEEHHHHHHHHhcccccc-----ccCcHHH----HHhccccccC-CCeEECCCCcHHHHHHHHHHCCC
Confidence            9999 4799999999999988775321100     1235555    44      34 48999999999999999999999


Q ss_pred             CeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          292 GGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       292 ~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                      +++||+|++| +++|+||.+||++++..
T Consensus       297 ~~l~Vvd~~g-~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          297 HRLVVVDEHD-VVKGIVSLSDILQALVL  323 (330)
T ss_dssp             SEEEEECTTS-BEEEEEEHHHHHHHHHS
T ss_pred             cEEEEEcCCC-cEEEEEeHHHHHHHHHh
Confidence            9999999888 99999999999998754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.85  E-value=2.3e-20  Score=180.59  Aligned_cols=186  Identities=17%  Similarity=0.255  Sum_probs=152.4

Q ss_pred             eEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccc----eEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           66 VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDR----YIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        66 vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~----~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      ++++.+++++.+|++.|.+++++.+||+|++.       ++    ++|++|..||+.++.....                
T Consensus       119 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-------~~~~~~~~Givt~~dl~~~~~~~~~----------------  175 (334)
T 2qrd_G          119 TIYVHPMHSLMDACLAMSKSRARRIPLIDVDG-------ETGSEMIVSVLTQYRILKFISMNCK----------------  175 (334)
T ss_dssp             CCCBCTTSBHHHHHHHHHHSCCSEEEEEEEET-------TTTEEEEEEEEEHHHHHHHHHHHCG----------------
T ss_pred             eeeeCCCCcHHHHHHHHHHCCceEEEEEeCCC-------CcCccceEEEeeHHHHHHHHHhhcc----------------
Confidence            38999999999999999999999999999862       34    9999999999987654310                


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhh---hccccccCCcEEecCCCCHHHHHHHHhhcCCcEeE
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD---IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIP  218 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~---i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ip  218 (426)
                                                     .......++.+   +|..    ++.++.+++++.+++..|.+++++++|
T Consensus       176 -------------------------------~~~~~~~~v~~l~~~m~~----~~~~v~~~~~~~~~~~~m~~~~~~~~~  220 (334)
T 2qrd_G          176 -------------------------------ETAMLRVPLNQMTIGTWS----NLATASMETKVYDVIKMLAEKNISAVP  220 (334)
T ss_dssp             -------------------------------GGGGCCCBGGGSSCSBCS----SCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred             -------------------------------chhhhhCcHHHhCCcccC----CceEECCCCcHHHHHHHHHHcCCcEEE
Confidence                                           00112345667   4665    788999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-----CCeeEeCCCCcHHHHHHHHHhcCCCe
Q 014353          219 VVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-----NHIVKVYEDEPVLQAFKLMRRKKIGG  293 (426)
Q Consensus       219 Vvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-----~~~~~v~~~~~v~~a~~~m~~~~~~~  293 (426)
                      |+| ++|+++|+||..|+++.+.....     .....++.+    +|..     .+++++.+++++.++++.|.++++++
T Consensus       221 Vvd-~~~~~~Giit~~dl~~~~~~~~~-----~~~~~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~  290 (334)
T 2qrd_G          221 IVN-SEGTLLNVYESVDVMHLIQDGDY-----SNLDLSVGE----ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHR  290 (334)
T ss_dssp             EEC-TTCBEEEEEETHHHHHHHTTSCG-----GGGGSBHHH----HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCE
T ss_pred             EEc-CCCcEEEEEEHHHHHHHhhcccc-----ccccCcHHH----HHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCE
Confidence            999 47899999999999998754321     011345666    6664     24899999999999999999999999


Q ss_pred             eEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          294 IPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       294 lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                      +||+|++| +++|+||.+||++++...
T Consensus       291 l~Vvd~~g-~l~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          291 LFVVDENL-KLEGILSLADILNYIIYD  316 (334)
T ss_dssp             EEEECTTC-BEEEEEEHHHHHHHHHSC
T ss_pred             EEEECCCC-eEEEEEeHHHHHHHHHhc
Confidence            99999888 999999999999987643

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.82  E-value=2.4e-20  Score=162.77  Aligned_cols=145  Identities=26%  Similarity=0.341  Sum_probs=112.5

Q ss_pred             ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc----cc
Q 014353          253 GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY----RS  328 (426)
Q Consensus       253 ~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~----~~  328 (426)
                      ...++++    +|+++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.......+...    ..
T Consensus        16 ~~~~V~d----iM~~~-v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g-~lvGiit~~Dll~~~~~~~~~~~~~~~~~~   89 (170)
T 4esy_A           16 RQVPIRD----ILTSP-VVTVREDDTLDAVAKTMLEHQIGCAPVVDQNG-HLVGIITESDFLRGSIPFWIYEASEILSRA   89 (170)
T ss_dssp             HTSBGGG----GCCSC-CCCEETTSBHHHHHHHHHHTTCSEEEEECTTS-CEEEEEEGGGGGGGTCCTTHHHHHHHHTTT
T ss_pred             cCCCHHH----hcCCC-CcEECCcCcHHHHHHHHHHcCCeEEEEEcCCc-cEEEEEEHHHHHHHHhhccccchhhhhhhc
Confidence            3567888    89875 99999999999999999999999999999988 999999999998876543211100    00


Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                      ..............  ..++.++|.+++++|++++++.+|+++|.+++++++||+| +|+++|+||++||+++++.+.
T Consensus        90 ~~~~~~~~~~~~~~--~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~~  164 (170)
T 4esy_A           90 IPAPEVEHLFETGR--KLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLEE  164 (170)
T ss_dssp             SCHHHHHHHHHHHT--TCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC-
T ss_pred             cchhhHHhhhcccc--ccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhcc
Confidence            11111111111111  1255667788999999999999999999999999999998 599999999999999987653

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.80  E-value=6.9e-19  Score=153.81  Aligned_cols=130  Identities=20%  Similarity=0.231  Sum_probs=108.6

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSI  329 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~  329 (426)
                      +...++++    +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++....+.        
T Consensus        39 l~~~~v~d----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~-~lvGivt~~dl~~~~~~~~--------  105 (172)
T 3lhh_A           39 LDERTISS----LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVD-DMVGIISAKQLLSESIAGE--------  105 (172)
T ss_dssp             ----CTTT----TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTT-SEEEEEEHHHHHHHHHTTC--------
T ss_pred             cCCCCHHH----hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCC-eEEEEEEHHHHHHHHhhcC--------
Confidence            33567777    8884 348999999999999999999999999999987 6 9999999999999865431        


Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCc
Q 014353          330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGY  409 (426)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~  409 (426)
                                     ..++.++| +++.++.+++++.++++.|.+++++++||+|++|+++|+||++||++.+.+++...
T Consensus       106 ---------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~de  169 (172)
T 3lhh_A          106 ---------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQE  169 (172)
T ss_dssp             ---------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC--
T ss_pred             ---------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCccc
Confidence                           11344556 68999999999999999999999999999999999999999999999999887654


Q ss_pred             c
Q 014353          410 F  410 (426)
Q Consensus       410 ~  410 (426)
                      .
T Consensus       170 ~  170 (172)
T 3lhh_A          170 D  170 (172)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.80  E-value=1e-19  Score=158.74  Aligned_cols=152  Identities=18%  Similarity=0.257  Sum_probs=117.9

Q ss_pred             HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353           46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE  125 (426)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~  125 (426)
                      ++.+.+..+|++++  |+++++++++++|+.+|+++|.+++++++||+|++        |+++|+||..||++.+.....
T Consensus        10 ~~~~~l~~~~V~di--M~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------g~lvGiit~~Dll~~~~~~~~   79 (170)
T 4esy_A           10 AIARAIRQVPIRDI--LTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN--------GHLVGIITESDFLRGSIPFWI   79 (170)
T ss_dssp             HHHHHHHTSBGGGG--CCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT--------SCEEEEEEGGGGGGGTCCTTH
T ss_pred             HHHHHHcCCCHHHh--cCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC--------ccEEEEEEHHHHHHHHhhccc
Confidence            46778889999999  99999999999999999999999999999999998        999999999999764321100


Q ss_pred             CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353          126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM  205 (426)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~  205 (426)
                      .              ....        .+.....      ..............+++++|..    +++++.+++++.++
T Consensus        80 ~--------------~~~~--------~~~~~~~------~~~~~~~~~~~~~~~v~~im~~----~~~tv~~~~~l~~a  127 (170)
T 4esy_A           80 Y--------------EASE--------ILSRAIP------APEVEHLFETGRKLTASAVMTQ----PVVTAAPEDSVGSI  127 (170)
T ss_dssp             H--------------HHHH--------HHTTTSC------HHHHHHHHHHHTTCBHHHHCBC----CSCCBCTTSBHHHH
T ss_pred             c--------------chhh--------hhhhccc------hhhHHhhhccccccchhhhccc----CcccCCcchhHHHH
Confidence            0              0000        0000000      0000000123345689999998    99999999999999


Q ss_pred             HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353          206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~  241 (426)
                      +..|.+++++++||+|  +|+++|+||.+|+++++.
T Consensus       128 ~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A          128 ADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSC
T ss_pred             HHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            9999999999999999  589999999999998874

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.79  E-value=1.3e-18  Score=148.09  Aligned_cols=126  Identities=25%  Similarity=0.407  Sum_probs=110.0

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSI  329 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~  329 (426)
                      +...++++    +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++.+..+.        
T Consensus        20 l~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~lvGivt~~dl~~~~~~~~--------   86 (148)
T 3lv9_A           20 FEEKKIRE----IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKD-DILGFVHIRDLYNQKINEN--------   86 (148)
T ss_dssp             GGTCBGGG----TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTT-SEEEEEEHHHHHHHHHHHS--------
T ss_pred             cCCCCHHH----ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCC-cEEEEEEHHHHHHHHhcCC--------
Confidence            44567888    8987 239999999999999999999999999999987 6 9999999999998854221        


Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                                     ..++.++| +++.++++++++.++++.|.+++++++||+|++|+++|+||.+||++.+++++
T Consensus        87 ---------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i  147 (148)
T 3lv9_A           87 ---------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI  147 (148)
T ss_dssp             ---------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred             ---------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence                           11445566 68999999999999999999999999999999999999999999999999875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.79  E-value=5.4e-19  Score=151.96  Aligned_cols=132  Identities=20%  Similarity=0.261  Sum_probs=107.8

Q ss_pred             cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353          254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK  332 (426)
Q Consensus       254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~  332 (426)
                      ...+++    +|.| ++++++.+++++.+|++.|.+++++++||+|+++ +++|+||.+|+++++.......        
T Consensus        14 ~~~~~~----iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~-~lvGiit~~Di~~~~~~~~~~~--------   80 (156)
T 3k6e_A           14 LGQEET----FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEK-QFVGTIGLRDIMAYQMEHDLSQ--------   80 (156)
T ss_dssp             HTTGGG----GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-C-BEEEEEEHHHHHHHHHHHTCCH--------
T ss_pred             hccHHH----hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEecchhhhhhhccccc--------
Confidence            445666    7876 4699999999999999999999999999999887 9999999999998865332110        


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                            ...  ...++.++|.+++.++++++++.+|++.|.++++  +||||++|+++|+||++||++++.+....
T Consensus        81 ------~~~--~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~~~~  146 (156)
T 3k6e_A           81 ------EIM--ADTDIVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNALLHD  146 (156)
T ss_dssp             ------HHH--TTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHHSCC
T ss_pred             ------ccc--cccCHHHhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHHhcc
Confidence                  001  1125667788899999999999999999998764  99999999999999999999999665443

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.78  E-value=2.2e-18  Score=143.40  Aligned_cols=121  Identities=17%  Similarity=0.250  Sum_probs=103.3

Q ss_pred             Cccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC-CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          264 IMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK-GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       264 im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                      +|++ .+++++.+++++.++++.|.+++++++||+++ ++ +++|+||.+|+++++..+..+          ...++.++
T Consensus         7 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~-~lvGivt~~dl~~~~~~~~~~----------~~~~v~~~   75 (130)
T 3hf7_A            7 IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLD-DAISMLRVREAYRLMTEKKEF----------TKEIMLRA   75 (130)
T ss_dssp             HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGG-GEEEEEEHHHHHHHHTSSSCC----------CHHHHHHH
T ss_pred             hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCC-cEEEEEEHHHHHHHHhccCcc----------chhhHHHh
Confidence            7864 35899999999999999999999999999976 45 999999999999987654311          02345665


Q ss_pred             hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                      | .          ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+.++.
T Consensus        76 m-~----------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i  129 (130)
T 3hf7_A           76 A-D----------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  129 (130)
T ss_dssp             S-B----------CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC--
T ss_pred             c-c----------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCC
Confidence            5 2          7899999999999999999999999999999999999999999999999864

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.76  E-value=2.6e-18  Score=142.63  Aligned_cols=123  Identities=17%  Similarity=0.308  Sum_probs=104.3

Q ss_pred             cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353          254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITA  331 (426)
Q Consensus       254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~  331 (426)
                      ..++++    +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++.+..+.          
T Consensus         4 ~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~~~Givt~~dl~~~~~~~~----------   68 (129)
T 3jtf_A            4 ERTVAD----IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRD-NIIGILLAKDLLRYMLEPA----------   68 (129)
T ss_dssp             CCBHHH----HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTT-CEEEEEEGGGGGGGGTCTT----------
T ss_pred             CCCHHH----hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCC-cEEEEEEHHHHHhHhccCC----------
Confidence            456777    7884 348999999999999999999999999999986 6 9999999999988754221          


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                                    ..+.++|. ++.++.+++++.++++.|.+++++++||+|++|+++|+||++||++.+++++
T Consensus        69 --------------~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           69 --------------LDIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             --------------SCGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred             --------------cCHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence                          12333443 5889999999999999999999999999999899999999999999999875

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.76  E-value=2.1e-18  Score=143.39  Aligned_cols=124  Identities=15%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353          254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITA  331 (426)
Q Consensus       254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~  331 (426)
                      ..++++    +|++ ..++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++....+..         
T Consensus         5 ~~~v~~----iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~~~Givt~~dl~~~~~~~~~---------   70 (130)
T 3i8n_A            5 DVPVTQ----VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKD-NIIGFVHRLELFKMQQSGSG---------   70 (130)
T ss_dssp             --CCTT----TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTT-CEEEECCHHHHHHHHHTTTT---------
T ss_pred             cCCHhh----CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCC-cEEEEEEHHHHHHHHhcCCC---------
Confidence            456777    8885 346799999999999999999999999999987 6 99999999999998754321         


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                         ..++.++|.           ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.++++
T Consensus        71 ---~~~v~~~m~-----------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ge  130 (130)
T 3i8n_A           71 ---QKQLGAVMR-----------PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVGE  130 (130)
T ss_dssp             ---TSBHHHHSE-----------ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHTC
T ss_pred             ---cCCHHHHhc-----------CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcCC
Confidence               113444442           678999999999999999999999999999999999999999999999864

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.75  E-value=7.7e-18  Score=138.00  Aligned_cols=116  Identities=21%  Similarity=0.319  Sum_probs=102.3

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|.++ ++++.+++++.++++.|.+++++++||+|++| +++|+|+.+|+++.+..+.                      
T Consensus         6 im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~G~vt~~dl~~~~~~~~----------------------   61 (122)
T 3kpb_A            6 ILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDEHG-KLVGIITSWDIAKALAQNK----------------------   61 (122)
T ss_dssp             HCCSC-CCCEETTSBHHHHHHHHHHHTCSCEEEECTTS-BEEEEECHHHHHHHHHTTC----------------------
T ss_pred             hhCCC-CEEeCCCCcHHHHHHHHHHcCCCeEEEECCCC-CEEEEEEHHHHHHHHHhcc----------------------
Confidence            78775 89999999999999999999999999999888 9999999999998865431                      


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                        .++.++|.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++++.++
T Consensus        62 --~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~~  121 (122)
T 3kpb_A           62 --KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK  121 (122)
T ss_dssp             --CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC--
T ss_pred             --cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhcC
Confidence              134455666899999999999999999999999999999889999999999999998754

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.75  E-value=2.4e-18  Score=144.25  Aligned_cols=129  Identities=13%  Similarity=0.253  Sum_probs=103.0

Q ss_pred             ccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353          255 KKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAK  332 (426)
Q Consensus       255 ~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~  332 (426)
                      .++++    +|++ .+++++.+++++.+|++.|.+++++++||+|++ + +++|+||.+||++.+.....          
T Consensus         3 ~~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~-~~vGivt~~dl~~~~~~~~~----------   67 (136)
T 3lfr_A            3 LQVRD----IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHD-DVLGVLLAKDLLPLILKADG----------   67 (136)
T ss_dssp             CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTT-CEEEEEEGGGGGGGGGSSSG----------
T ss_pred             CChHh----ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCC-cEEEEEEHHHHHHHHHhccC----------
Confidence            45666    7874 348999999999999999999999999999987 6 99999999999988653210          


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF  410 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~  410 (426)
                                 ...++.++|. ++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++.+.++....+
T Consensus        68 -----------~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de~  133 (136)
T 3lfr_A           68 -----------DSDDVKKLLR-PATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEH  133 (136)
T ss_dssp             -----------GGCCGGGTCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--------
T ss_pred             -----------CCcCHHHHcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCcc
Confidence                       0113445554 48999999999999999999999999999999999999999999999998765443

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.75  E-value=4.7e-18  Score=145.45  Aligned_cols=130  Identities=18%  Similarity=0.263  Sum_probs=107.5

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEE-eCC-CCeEEEEEeHHHHHHHhhCCcccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVV-EKG-GNKAVGNISLRDIQFLLTAPEIYHDYRS  328 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVv-d~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~  328 (426)
                      +...++++    +|++ .+++++.+++++.+|++.|.+++++++||+ |++ + +++|+||.+|+++.+..+.       
T Consensus        17 l~~~~v~~----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~-~lvGivt~~dl~~~~~~~~-------   84 (153)
T 3oco_A           17 MNDKVASD----VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKD-KIIGYAYNYDIVRQARIDD-------   84 (153)
T ss_dssp             HHHCBHHH----HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEE-EEEEEEEHHHHHHHHHHHT-------
T ss_pred             cCCCEeee----EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCC-cEEEEEEHHHHHhHHhcCC-------
Confidence            34567888    8886 349999999999999999999999999999 653 6 9999999999998854221       


Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                                      ..++.++| +++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+.++...
T Consensus        85 ----------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d  147 (153)
T 3oco_A           85 ----------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD  147 (153)
T ss_dssp             ----------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred             ----------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence                            12455666 6899999999999999999999999999999999999999999999999987665


Q ss_pred             cc
Q 014353          409 YF  410 (426)
Q Consensus       409 ~~  410 (426)
                      .+
T Consensus       148 e~  149 (153)
T 3oco_A          148 EQ  149 (153)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.74  E-value=2e-18  Score=142.84  Aligned_cols=123  Identities=15%  Similarity=0.373  Sum_probs=101.9

Q ss_pred             ccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353          255 KKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAK  332 (426)
Q Consensus       255 ~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~  332 (426)
                      .++++    +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++.+....     ...   
T Consensus         3 ~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~~vGivt~~dl~~~~~~~~-----~~~---   69 (127)
T 3nqr_A            3 QRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKD-HIEGILMAKDLLPFMRSDA-----EAF---   69 (127)
T ss_dssp             CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTT-CEEEEEEGGGGGGGGSTTC-----CCC---
T ss_pred             cCHHH----hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCC-cEEEEEEHHHHHHHHhccC-----CCC---
Confidence            35666    7875 348999999999999999999999999999987 6 9999999999998864321     111   


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                          ++.++|.           ++.++++++++.++++.|.+++++++||+|++|+++|+||++||++.++++
T Consensus        70 ----~v~~~m~-----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ge  127 (127)
T 3nqr_A           70 ----SMDKVLR-----------TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE  127 (127)
T ss_dssp             ----CHHHHCB-----------CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC---
T ss_pred             ----CHHHHcC-----------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence                2444442           578999999999999999999999999999999999999999999998763

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.74  E-value=1.2e-17  Score=146.07  Aligned_cols=130  Identities=18%  Similarity=0.200  Sum_probs=110.7

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSI  329 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~  329 (426)
                      +...++++    +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+|+.+||+..+..+.        
T Consensus        33 l~~~~v~d----iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-~lvGivt~~Dl~~~~~~~~--------   99 (173)
T 3ocm_A           33 LAERSIRS----IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLD-EVVGIGRAKDLVADLITEG--------   99 (173)
T ss_dssp             HTTSCSTT----TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTT-SEEEEEEHHHHHHHHHHHS--------
T ss_pred             cCCCCHHH----hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCC-CEEEEEEHHHHHHHHhcCC--------
Confidence            33567888    8975 358999999999999999999999999999986 6 9999999999998853211        


Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCc
Q 014353          330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGY  409 (426)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~  409 (426)
                                     ...+.  |.+++.++++++++.+++++|.+++++.+||+|++|+++|+||.+||++.+.++....
T Consensus       100 ---------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de  162 (173)
T 3ocm_A          100 ---------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDE  162 (173)
T ss_dssp             ---------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCT
T ss_pred             ---------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCc
Confidence                           01223  3458899999999999999999999999999999999999999999999999987765


Q ss_pred             cc
Q 014353          410 FG  411 (426)
Q Consensus       410 ~~  411 (426)
                      .+
T Consensus       163 ~~  164 (173)
T 3ocm_A          163 DE  164 (173)
T ss_dssp             TS
T ss_pred             cc
Confidence            53

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.74  E-value=8.6e-18  Score=155.37  Aligned_cols=226  Identities=15%  Similarity=0.143  Sum_probs=139.4

Q ss_pred             cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      ..+++++  |+++++++++++++.+|+++|.+++++++||+|++        |+++|+||..|+++++............
T Consensus         6 ~~~v~~i--m~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------~~l~Giit~~di~~~~~~~~~~~~~~~~   75 (245)
T 3l2b_A            6 KLKVEDL--EMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN--------NHLLGMLSTSNITATYMDIWDSNILAKS   75 (245)
T ss_dssp             CCBGGGS--CCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHHHHHHCCCCTTHHHHT
T ss_pred             cCcHHHh--cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHHhhhhhhhhhc
Confidence            3567777  88999999999999999999999999999999988        8999999999999987653221100000


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                      ...........+..     -..+........+.+        .........++.....+.++.+.   +..+++..+.+.
T Consensus        76 ~~~~~~v~~~l~~~-----~l~~~~~~~~~~g~~--------~i~a~~~~~~~~~~~~~~ivIvg---dr~~~~~~~i~~  139 (245)
T 3l2b_A           76 ATSLDNILDTLSAE-----AQNINEERKVFPGKV--------VVAAMQAESLKEFISEGDIAIAG---DRAEIQAELIEL  139 (245)
T ss_dssp             TCCHHHHHHHTTCE-----EEECCTTCCCCCSCE--------EECCSCGGGGGGTCCTTCEEEEC---SCHHHHHHHHHT
T ss_pred             cCCHHHHHHHhCCE-----EEeccCCcceeeeeE--------EEEeCChHHHHhcCCCCCEEEEC---CCHHHHHHHHHc
Confidence            00000000000000     000000000000000        00011122222222233555553   357888889999


Q ss_pred             CCcEeEEEeCC-----------CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHH
Q 014353          213 KMKSIPVVDLG-----------EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQ  281 (426)
Q Consensus       213 ~~~~ipVvd~~-----------~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~  281 (426)
                      ++.++++....           .+.+..+.+..|........        ....++++    +|++.+++++.+++++.+
T Consensus       140 ~~~~liit~~~~~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~--------~~~~~v~~----im~~~~~~~~~~~~~~~~  207 (245)
T 3l2b_A          140 KVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLI--------VQSLPVDY----VMTKDNLVAVSTDDLVED  207 (245)
T ss_dssp             TCSEEEECTTCCCCHHHHHHHHHHTCEEEECSSCHHHHHHHG--------GGGSBHHH----HSBCTTCCCEETTSBHHH
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHcCCeEEEeCCChHHHHHHH--------hcCCceee----EecCCccEEECCCCcHHH
Confidence            99998887421           12245566666655443221        11356777    888334999999999999


Q ss_pred             HHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353          282 AFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL  317 (426)
Q Consensus       282 a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~  317 (426)
                      ++++|.+++++++||+|++| +++|+||.+|+++..
T Consensus       208 ~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dll~~~  242 (245)
T 3l2b_A          208 VKVTMSETRYSNYPVIDENN-KVVGSIARFHLISTH  242 (245)
T ss_dssp             HHHHHHHHCCSEEEEECTTC-BEEEEEECC------
T ss_pred             HHHHHHhcCCceEEEEcCCC-eEEEEEEHHHhhchh
Confidence            99999999999999999888 999999999998774

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.73  E-value=2.3e-17  Score=136.61  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=107.0

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      +.++++    +|.++ +.++.+++++.++++.|.+++++++||+|+ | +++|+||.+|+++.+..+...          
T Consensus         4 s~~v~~----~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~-~~~Givt~~dl~~~~~~~~~~----------   66 (128)
T 3gby_A            4 SVTFSY----LAETD-YPVFTLGGSTADAARRLAASGCACAPVLDG-E-RYLGMVHLSRLLEGRKGWPTV----------   66 (128)
T ss_dssp             TCBGGG----GCBCC-SCCEETTSBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHTTCSSSCCT----------
T ss_pred             ceEHHH----hhcCC-cceECCCCCHHHHHHHHHHCCCcEEEEEEC-C-EEEEEEEHHHHHHHHhhCCcc----------
Confidence            356677    78875 999999999999999999999999999999 7 999999999999875433110          


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                                 ..++.++|.+++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++.+.
T Consensus        67 -----------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           67 -----------KEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             -----------TCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             -----------cCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence                       0135566677899999999999999999999999999999999999999999999998754

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=5.1e-17  Score=135.24  Aligned_cols=126  Identities=27%  Similarity=0.411  Sum_probs=107.6

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      ..++++    +|.++ ++++.+++++.++++.|.+++++++||+| +| +++|+|+.+|+++.+..+...          
T Consensus         3 ~~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~-~~~Givt~~dl~~~~~~~~~~----------   65 (133)
T 2ef7_A            3 EEIVKE----YMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVD-GN-KPVGIITERDIVKAIGKGKSL----------   65 (133)
T ss_dssp             CCBGGG----TSBCS-CCEEETTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTTCCT----------
T ss_pred             cccHHH----hccCC-CEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC-EEEEEEcHHHHHHHHhcCCCc----------
Confidence            346677    88875 89999999999999999999999999999 67 999999999999886543110          


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                                 ..++.++|.+++.++++++++.++++.|.+++++++||+|++|+++|+||..||++.+.++..
T Consensus        66 -----------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~  128 (133)
T 2ef7_A           66 -----------ETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFE  128 (133)
T ss_dssp             -----------TCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC-
T ss_pred             -----------ccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHH
Confidence                       114455666689999999999999999999999999999988999999999999999987654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.73  E-value=6.6e-17  Score=135.47  Aligned_cols=127  Identities=19%  Similarity=0.317  Sum_probs=107.4

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH-HhhCCccccccccccHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF-LLTAPEIYHDYRSITAK  332 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~~~~~~~~~~~~~~~~~  332 (426)
                      ..++++    +|.++ ++++.+++++.++++.|.+++++++||+|++| +++|+||.+|+++ ++..+. .         
T Consensus         6 ~~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~-~---------   69 (138)
T 2yzi_A            6 KAPIKV----YMTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDDG-NVVGFFTKSDIIRRVIVPGL-P---------   69 (138)
T ss_dssp             TSBGGG----TCBCC-CCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTTTTCC-C---------
T ss_pred             hhhHHH----HhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHHhcCC-c---------
Confidence            456777    78764 99999999999999999999999999999877 9999999999984 433221 0         


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                                 ...++.++|.+++.++++++++.++++.|.+++++++ |+|++|+++|+||..||++.+.++...
T Consensus        70 -----------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~  133 (138)
T 2yzi_A           70 -----------YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLET  133 (138)
T ss_dssp             -----------TTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCC
T ss_pred             -----------ccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHh
Confidence                       0114455666799999999999999999999999999 999889999999999999999877554

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.72  E-value=3.8e-17  Score=151.03  Aligned_cols=206  Identities=16%  Similarity=0.178  Sum_probs=131.3

Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhh-------
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE-------  250 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~-------  250 (426)
                      ..+++++|..    ++.++.+++++.+++..|.+++++++||+| ++|+++|++|..|+++++..........       
T Consensus         6 ~~~v~~im~~----~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd-~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~   80 (245)
T 3l2b_A            6 KLKVEDLEMD----KIAPLAPEVSLKMAWNIMRDKNLKSIPVAD-GNNHLLGMLSTSNITATYMDIWDSNILAKSATSLD   80 (245)
T ss_dssp             CCBGGGSCCB----CCCCBCTTCBHHHHHHHHHHTTCSEEEEEC-TTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred             cCcHHHhcCC----CCcEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence            4579999987    888999999999999999999999999999 4799999999999999885432111000       


Q ss_pred             h----h--------------------ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEE
Q 014353          251 S----W--------------------GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVG  306 (426)
Q Consensus       251 ~----~--------------------~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvG  306 (426)
                      .    +                    .......+ ...+.++.++.+ .+  -.++.+.+.+.++++++++++..  +  
T Consensus        81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~-~~~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~--~--  152 (245)
T 3l2b_A           81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESL-KEFISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHT--P--  152 (245)
T ss_dssp             HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGG-GGTCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCC--C--
T ss_pred             HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHH-HhcCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCC--C--
Confidence            0    0                    00000111 013344434444 22  36888888999999998886432  1  


Q ss_pred             EEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCc-CCceeecCCCCHHHHHHHHHhCCCcEEEEEcC
Q 014353          307 NISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLL-SGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF  385 (426)
Q Consensus       307 iIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~  385 (426)
                         ..++.......+..- + ..+. +... ....+.....+.++|. +++.++++++++.+++++|.+++++++||+|+
T Consensus       153 ---~~~v~~~a~~~~~~~-i-~t~~-d~~~-~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~  225 (245)
T 3l2b_A          153 ---SKEIIELAKKNNITV-I-TTPH-DSFT-ASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE  225 (245)
T ss_dssp             ---CHHHHHHHHHHTCEE-E-ECSS-CHHH-HHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT
T ss_pred             ---CHHHHHHHHHcCCeE-E-EeCC-ChHH-HHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC
Confidence               122222221111000 0 0000 0000 1111222224445566 69999999999999999999999999999999


Q ss_pred             CCcEEEEEeHHHHHHHHH
Q 014353          386 NGNLEGVITLRDIISRLV  403 (426)
Q Consensus       386 ~~~liGvIT~~Dll~~l~  403 (426)
                      +|+++|+||.+|+++...
T Consensus       226 ~~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          226 NNKVVGSIARFHLISTHK  243 (245)
T ss_dssp             TCBEEEEEECC-------
T ss_pred             CCeEEEEEEHHHhhchhh
Confidence            999999999999998643

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.72  E-value=5.6e-17  Score=141.63  Aligned_cols=148  Identities=15%  Similarity=0.219  Sum_probs=107.0

Q ss_pred             cccccchhhhcCCC-----CChhHH--Hhhh--hccCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeec
Q 014353           27 GMKVEDLWDVLEPQ-----LSPTEK--LNAC--FESIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDV   95 (426)
Q Consensus        27 ~~~~~~~~~~l~~~-----~~~~~~--~~~~--~~~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~   95 (426)
                      .+|.++|..+++..     ++.++.  ++..  |..+++.++  |+  ++++++++++++.+|+++|.++++..+||+|.
T Consensus         6 ~~t~~el~~l~~~~~~~g~l~~~e~~~i~~~~~l~~~~v~di--M~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~   83 (172)
T 3lhh_A            6 NVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSL--MVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN   83 (172)
T ss_dssp             -------------------------------------CTTTT--SEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHHh--CccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC
Confidence            46788888887553     555332  3333  557888988  87  88999999999999999999999999999998


Q ss_pred             CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccc
Q 014353           96 DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEF  175 (426)
Q Consensus        96 ~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (426)
                      +.       ++++|+||..||+.++...                                                    
T Consensus        84 ~~-------~~lvGivt~~dl~~~~~~~----------------------------------------------------  104 (172)
T 3lhh_A           84 NV-------DDMVGIISAKQLLSESIAG----------------------------------------------------  104 (172)
T ss_dssp             ST-------TSEEEEEEHHHHHHHHHTT----------------------------------------------------
T ss_pred             CC-------CeEEEEEEHHHHHHHHhhc----------------------------------------------------
Confidence            64       7999999999998765421                                                    


Q ss_pred             ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                       ...++.++| .    ++.++.+++++.+++..|.+++++++||+| ++|+++|+||..|+++.+..
T Consensus       105 -~~~~v~~im-~----~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          105 -ERLELVDLV-K----NCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             -CCCCGGGGC-B----CCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             -CcccHHHHh-c----CCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence             134688899 5    889999999999999999999999999999 47999999999999999864

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.72  E-value=1.2e-16  Score=133.72  Aligned_cols=125  Identities=28%  Similarity=0.432  Sum_probs=104.9

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHH-HHHhhCCccccccccccHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAPEIYHDYRSITAK  332 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl-~~~~~~~~~~~~~~~~~~~  332 (426)
                      ..++++    +|+++ ++++.+++++.++++.|.+++++++||+|++| +++|+|+.+|+ .+.+..+..    ..    
T Consensus         7 ~~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~----~~----   72 (138)
T 2p9m_A            7 NIKVKD----VMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDDEN-KVIGIVTTTDIGYNLIRDKYT----LE----   72 (138)
T ss_dssp             TCBGGG----TSBCS-CCCEETTSBHHHHHHHHHHHTCCEEEEECTTC-BEEEEEEHHHHHHHHTTTCCC----SS----
T ss_pred             cCCHHH----hhcCC-ceEECCCCcHHHHHHHHHHCCCcEEEEECCCC-eEEEEEEHHHHHHHHHhhccc----CC----
Confidence            456777    78764 89999999999999999999999999999887 99999999999 887643211    01    


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCC-----CcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKK-----IHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~-----~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                         .++.++|          .+++.++++++++.++++.|.+++     ++++||+|++|+++|+||..||++.+.++
T Consensus        73 ---~~v~~~m----------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A           73 ---TTIGDVM----------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             ---CBHHHHS----------CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             ---cCHHHHh----------CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence               1244444          348899999999999999999999     99999999889999999999999998765

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.71  E-value=4.9e-17  Score=146.12  Aligned_cols=125  Identities=19%  Similarity=0.242  Sum_probs=107.7

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc---CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccc
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK---KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS  328 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~---~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~  328 (426)
                      +...++++    +|+++ ++++.+++++.++++.|.++   +++.+||+|+++ +++|+||.+|++...  .        
T Consensus        51 ~~~~~v~~----iM~~~-~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~-~lvGivt~~dll~~~--~--------  114 (205)
T 3kxr_A           51 YSENEIGR----YTDHQ-MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEAD-KYLGTVRRYDIFKHE--P--------  114 (205)
T ss_dssp             SCTTCGGG----GCBCC-CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTC-BEEEEEEHHHHTTSC--T--------
T ss_pred             CCcchHHh----hccCc-eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCC-eEEEEEEHHHHHhCC--C--------
Confidence            44567888    89885 99999999999999999987   889999999987 999999999997531  0        


Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                                      ...+.++|.+++.++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..+...
T Consensus       115 ----------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~e  178 (205)
T 3kxr_A          115 ----------------HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEA  178 (205)
T ss_dssp             ----------------TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC-
T ss_pred             ----------------cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHH
Confidence                            1134456667899999999999999999999999999999999999999999999999766544

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.71  E-value=5.6e-17  Score=138.01  Aligned_cols=134  Identities=16%  Similarity=0.182  Sum_probs=109.8

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      +...++++    +|.+ .+++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+........     
T Consensus        12 l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~-----   81 (150)
T 3lqn_A           12 FQQIFVKD----LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY-KLHGLISTAMILDGILGLERIEF-----   81 (150)
T ss_dssp             HHHCBHHH----HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHTBCSSSBCG-----
T ss_pred             hhcCChhh----cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCC-CEEEEEEHHHHHHHHHhhcccch-----
Confidence            44567777    7875 3589999999999999999999999999999888 99999999999998754321100     


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                       ..         ....++.++|.+++.++.+++++.++++.|.++++  +||+|++|+++|+||.+||++++.++..
T Consensus        82 -~~---------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A           82 -ER---------LEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             -GG---------GGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             -hH---------HhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence             00         01125556777799999999999999999999987  9999999999999999999999987654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.71  E-value=9.6e-17  Score=138.15  Aligned_cols=125  Identities=19%  Similarity=0.234  Sum_probs=106.4

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      ..++++    +|++  ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+..+....         
T Consensus        16 ~~~v~~----im~~--~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~~---------   79 (159)
T 3fv6_A           16 KLQVKD----FQSI--PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA-VLVGVLSRKDLLRASIGQQELT---------   79 (159)
T ss_dssp             TCBGGG----SCBC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHTSCSCTT---------
T ss_pred             hCCHHH----HcCC--CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCC-cEEEEEeHHHHHHHhhccCccc---------
Confidence            457777    8875  56999999999999999999999999999888 9999999999999764332110         


Q ss_pred             HHHHHHHHhhhcCCCCCCCcC--CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC---cEEEEEeHHHHHHHHHhC
Q 014353          334 FLTAVRKYMEEHHHEDSPLLS--GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG---NLEGVITLRDIISRLVHE  405 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~---~liGvIT~~Dll~~l~~~  405 (426)
                                 ..++.++|.+  ++.++.+++++.+|++.|.+++++++||+|++|   +++|+||.+||++++..-
T Consensus        80 -----------~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~  145 (159)
T 3fv6_A           80 -----------SVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSL  145 (159)
T ss_dssp             -----------TCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHH
T ss_pred             -----------CcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHH
Confidence                       1144556666  889999999999999999999999999999888   999999999999999743

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=3.9e-17  Score=141.52  Aligned_cols=132  Identities=18%  Similarity=0.327  Sum_probs=109.7

Q ss_pred             hccccccccccCCccc--CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA--NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI  329 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~--~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~  329 (426)
                      +...++++    +|.+  .+++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+..+..       
T Consensus        21 l~~~~v~d----im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~-------   88 (165)
T 3fhm_A           21 GMATFVKD----LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG-VVLGIFTERDLVKAVAGQGA-------   88 (165)
T ss_dssp             SSSCBHHH----HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHHGG-------
T ss_pred             hhhcCHHH----HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHhcCC-------
Confidence            44566777    7875  3599999999999999999999999999999888 99999999999988643210       


Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                                  .....++.++|.+++.+|.+++++.++++.|.+++++++||+|+ |+++|+||..||++++..+...
T Consensus        89 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~~~  154 (165)
T 3fhm_A           89 ------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEIEA  154 (165)
T ss_dssp             ------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC---
T ss_pred             ------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHHH
Confidence                        00112556677779999999999999999999999999999998 9999999999999999876554

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.71  E-value=3.6e-17  Score=139.15  Aligned_cols=138  Identities=22%  Similarity=0.340  Sum_probs=104.9

Q ss_pred             ccccccccCCcccC-CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          255 KKLSEIGLPIMSAN-HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       255 ~~v~~~~~~im~~~-~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      .++++    +|.+. +++++.+++++.++++.|.+++++++||+|+++ +++|+||.+|++++...+..+.        .
T Consensus         5 ~~v~~----im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~G~vt~~dl~~~~~~~~~~~--------~   71 (152)
T 4gqw_A            5 YTVGE----FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW-KLVGLVSDYDLLALDSGDSTWK--------T   71 (152)
T ss_dssp             SBGGG----TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTC-BEEEEEEHHHHTTCC----CCH--------H
T ss_pred             EEhhh----ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCC-eEEEEEEHHHHHHhhcccCccc--------c
Confidence            45666    78762 489999999999999999999999999999987 9999999999987643221110        0


Q ss_pred             HHHHHHHHh--hhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          334 FLTAVRKYM--EEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       334 ~~~~v~~~~--~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                      +. ......  ....++.++|.+++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++.+....
T Consensus        72 ~~-~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A           72 FN-AVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             HH-HHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC--
T ss_pred             hH-HHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhcc
Confidence            00 000000  0011333445558899999999999999999999999999999999999999999999998654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.71  E-value=1.4e-16  Score=134.28  Aligned_cols=137  Identities=21%  Similarity=0.468  Sum_probs=105.3

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      ..+++++.. +|.. +++++.+++++.++++.|.+++++++||+|++| +++|+|+.+|+++.+..+. + .....    
T Consensus         7 ~~~v~~~~~-~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~-~-~~~~~----   77 (144)
T 2nyc_A            7 KIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGI-Y-NDLSL----   77 (144)
T ss_dssp             GSBGGGSSC-CBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHTC------CCS----
T ss_pred             hcchhhcCC-CCCC-CceEECCCCcHHHHHHHHHHcCcceeeEEcCCC-cEEEEEcHHHHHHHhcccc-c-ccCCc----
Confidence            456666543 5665 499999999999999999999999999999887 9999999999998865431 1 01112    


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                         ++.++|....  .  -..++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+..+.
T Consensus        78 ---~v~~~m~~~~--~--~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~~  143 (144)
T 2nyc_A           78 ---SVGEALMRRS--D--DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGS  143 (144)
T ss_dssp             ---BHHHHHHHCC----------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHC-
T ss_pred             ---cHHHHHhcCc--c--ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHhcc
Confidence               2444443200  0  0015789999999999999999999999999998899999999999999998653

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.71  E-value=1.4e-16  Score=135.28  Aligned_cols=124  Identities=16%  Similarity=0.256  Sum_probs=109.8

Q ss_pred             hccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353           51 FESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS  128 (426)
Q Consensus        51 ~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~  128 (426)
                      +..++++++  |++  +++++++++++.+|+++|.++++..+||+|++.       ++++|+||..|++..+....    
T Consensus        20 l~~~~v~di--M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~~~----   86 (148)
T 3lv9_A           20 FEEKKIREI--MVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNK-------DDILGFVHIRDLYNQKINEN----   86 (148)
T ss_dssp             GGTCBGGGT--SEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSST-------TSEEEEEEHHHHHHHHHHHS----
T ss_pred             cCCCCHHHc--cccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHhcCC----
Confidence            567889998  876  999999999999999999999999999999863       69999999999987755321    


Q ss_pred             CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353          129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL  208 (426)
Q Consensus       129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~  208 (426)
                                                                       ..++.++| .    ++.++.+++++.+++..
T Consensus        87 -------------------------------------------------~~~v~~~m-~----~~~~v~~~~~l~~~~~~  112 (148)
T 3lv9_A           87 -------------------------------------------------KIELEEIL-R----DIIYISENLTIDKALER  112 (148)
T ss_dssp             -------------------------------------------------CCCGGGTC-B----CCEEEETTSBHHHHHHH
T ss_pred             -------------------------------------------------CccHHHhc-C----CCeEECCCCCHHHHHHH
Confidence                                                             34678888 5    88899999999999999


Q ss_pred             HhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          209 LSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       209 l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      |.+++++++||+| ++|+++|+||..|+++.+..
T Consensus       113 m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A          113 IRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             HHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred             HHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence            9999999999999 47999999999999998853

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.70  E-value=1.2e-16  Score=131.31  Aligned_cols=118  Identities=20%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|.++ ++++.+++++.++++.|.+++++++||+| +| +++|+|+.+|+++.+..+...   .       ..++.++| 
T Consensus         6 ~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~-~~~G~it~~dl~~~~~~~~~~---~-------~~~v~~~m-   71 (125)
T 1pbj_A            6 VMVTD-VDTIDITASLEDVLRNYVENAKGSSVVVK-EG-VRVGIVTTWDVLEAIAEGDDL---A-------EVKVWEVM-   71 (125)
T ss_dssp             HCBCS-CCEEETTCBHHHHHHHHHHHCCCEEEEEE-TT-EEEEEEEHHHHHHHHHHTCCT---T-------TSBHHHHC-
T ss_pred             hcCCC-ceEECCCCcHHHHHHHHHHcCCCEEEEEe-CC-eeEEEEeHHHHHHHHhcCCcc---c-------ccCHHHHc-
Confidence            77764 99999999999999999999999999999 67 999999999999876543210   0       11244444 


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                               .+++.++.+++++.++++.|.+++++++||+|+ |+++|+||.+||++++.++
T Consensus        72 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           72 ---------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             ---------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred             ---------CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence                     448899999999999999999999999999998 9999999999999998754

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.70  E-value=1.1e-16  Score=132.84  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=104.9

Q ss_pred             hccCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353           51 FESIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS  128 (426)
Q Consensus        51 ~~~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~  128 (426)
                      |+.++++++  |+  .+++++++++++.+|+++|.++++.++||+|++.       ++++|+||..|++..+....    
T Consensus         3 l~~~~v~~i--M~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~~~~~~----   69 (130)
T 3i8n_A            3 AQDVPVTQV--MTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQK-------DNIIGFVHRLELFKMQQSGS----   69 (130)
T ss_dssp             ----CCTTT--SCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSST-------TCEEEECCHHHHHHHHHTTT----
T ss_pred             cCcCCHhhC--CCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CcEEEEEEHHHHHHHHhcCC----
Confidence            567888888  75  6688999999999999999999999999999754       79999999999987654210    


Q ss_pred             CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353          129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL  208 (426)
Q Consensus       129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~  208 (426)
                                                                      ...++.++|.     ++.++.+++++.+++..
T Consensus        70 ------------------------------------------------~~~~v~~~m~-----~~~~v~~~~~l~~~~~~   96 (130)
T 3i8n_A           70 ------------------------------------------------GQKQLGAVMR-----PIQVVLNNTALPKVFDQ   96 (130)
T ss_dssp             ------------------------------------------------TTSBHHHHSE-----ECCEEETTSCHHHHHHH
T ss_pred             ------------------------------------------------CcCCHHHHhc-----CCcCcCCCCcHHHHHHH
Confidence                                                            1346888885     66799999999999999


Q ss_pred             HhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353          209 LSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       209 l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~  241 (426)
                      |.+++++++||+| ++|+++|++|..|+++.+.
T Consensus        97 m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           97 MMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             HHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             HHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHc
Confidence            9999999999999 4799999999999999875

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.70  E-value=1.9e-16  Score=132.16  Aligned_cols=124  Identities=17%  Similarity=0.321  Sum_probs=102.6

Q ss_pred             cccccccCCcc---cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353          256 KLSEIGLPIMS---ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK  332 (426)
Q Consensus       256 ~v~~~~~~im~---~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~  332 (426)
                      ++++    +|+   . +++++.+++++.++++.|.+++++++||+| +| +++|+|+.+|+++.+...+..         
T Consensus         7 ~v~~----im~~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~-~~~Givt~~dl~~~~~~~~~~---------   70 (135)
T 2rc3_A            7 TVKH----LLQEKGH-TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DE-KLVGILTERDFSRKSYLLDKP---------   70 (135)
T ss_dssp             BHHH----HHHHHCC-CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHGGGSSSC---------
T ss_pred             eHHH----HHhcCCC-CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC-EEEEEEehHHHHHHHHHcCCC---------
Confidence            4566    776   4 489999999999999999999999999999 67 999999999999643322100         


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                                .....+.++|.+++.++++++++.++++.|.+++++++||+| +|+++|+||.+||++++.++.
T Consensus        71 ----------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~~  133 (135)
T 2rc3_A           71 ----------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQH  133 (135)
T ss_dssp             ----------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC--
T ss_pred             ----------cccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhcc
Confidence                      001245566777999999999999999999999999999999 799999999999999987653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.69  E-value=2.5e-16  Score=128.93  Aligned_cols=119  Identities=32%  Similarity=0.488  Sum_probs=106.3

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      +++++|.+    ++.++.+++++.+++..|.+++.+++||+| ++++++|+++..|+++++...          ..++.+
T Consensus         2 ~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~G~vt~~dl~~~~~~~----------~~~v~~   66 (122)
T 3kpb_A            2 LVKDILSK----PPITAHSNISIMEAAKILIKHNINHLPIVD-EHGKLVGIITSWDIAKALAQN----------KKTIEE   66 (122)
T ss_dssp             BHHHHCCS----CCCCEETTSBHHHHHHHHHHHTCSCEEEEC-TTSBEEEEECHHHHHHHHHTT----------CCBGGG
T ss_pred             chHHhhCC----CCEEeCCCCcHHHHHHHHHHcCCCeEEEEC-CCCCEEEEEEHHHHHHHHHhc----------ccCHHH
Confidence            57889987    888999999999999999999999999999 489999999999999988643          236777


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                          +|.++ ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+||++++..
T Consensus        67 ----~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ----IMTRN-VITAHEDEPVDHVAIKMSKYNISGVPVVDDYR-RVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ----TSBSS-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHC-
T ss_pred             ----HhcCC-CeEECCCCCHHHHHHHHHHhCCCeEEEECCCC-CEEEEEeHHHHHHHhhc
Confidence                78764 89999999999999999999999999999988 99999999999998653

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.69  E-value=9.6e-17  Score=137.84  Aligned_cols=127  Identities=20%  Similarity=0.352  Sum_probs=105.0

Q ss_pred             CccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCC
Q 014353           55 PVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP  134 (426)
Q Consensus        55 ~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~  134 (426)
                      .+.++-.+..+++++++++|+.+|+++|.++++.++||+|++        ++++|+||..|++.++.....         
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~--------~~lvGiit~~Di~~~~~~~~~---------   78 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE--------KQFVGTIGLRDIMAYQMEHDL---------   78 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC---------CBEEEEEEHHHHHHHHHHHTC---------
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC--------CcEEEEEEecchhhhhhhccc---------
Confidence            344442225689999999999999999999999999999987        899999999999988765421         


Q ss_pred             chhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCC
Q 014353          135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKM  214 (426)
Q Consensus       135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~  214 (426)
                                                           ........++.++|.+    ++.++.+++++.+++..|.+++ 
T Consensus        79 -------------------------------------~~~~~~~~~v~~im~~----~~~~v~~~~~l~~~~~~m~~~~-  116 (156)
T 3k6e_A           79 -------------------------------------SQEIMADTDIVHMTKT----DVAVVSPDFTITEVLHKLVDES-  116 (156)
T ss_dssp             -------------------------------------CHHHHTTSBGGGTCBC----SCCCBCTTCCHHHHHHHTTTSS-
T ss_pred             -------------------------------------ccccccccCHHHhhcC----CceecccccHHHHHHHHHHHcC-
Confidence                                                 0112345679999987    8999999999999999998765 


Q ss_pred             cEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          215 KSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       215 ~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                       .+||+| ++|+++|+||..|+++++..
T Consensus       117 -~lpVVd-~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A          117 -FLPVVD-AEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             -EEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             -CeEEEe-cCCEEEEEEEHHHHHHHHHH
Confidence             499999 58999999999999999854

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.69  E-value=7.5e-17  Score=134.24  Aligned_cols=124  Identities=23%  Similarity=0.363  Sum_probs=101.9

Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH-HhhCCccccccccccHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF-LLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~~~~~~~~~~~~~~~~~~  333 (426)
                      .++++    +|.++ ++++.+++++.++++.|.+++++++||+|+++ +++|+|+.+|+++ ++..+...   .      
T Consensus         8 ~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~~---~------   72 (133)
T 1y5h_A            8 TTARD----IMNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDDD-RLHGMLTDRDIVIKGLAAGLDP---N------   72 (133)
T ss_dssp             CCHHH----HSEET-CCCEETTSBHHHHHHHHHHHTCSEEEEECGGG-BEEEEEEHHHHHHTTGGGTCCT---T------
T ss_pred             cCHHH----HhcCC-ceEeCCCCCHHHHHHHHHHhCCCeEEEECCCC-eEEEEEeHHHHHHHHHhcCCCc---c------
Confidence            45666    78764 89999999999999999999999999998877 9999999999984 54332110   0      


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                       ..++.++|..          ++.++++++++.++++.|.+++++++||+|+ |+++|+||.+||++++.++
T Consensus        73 -~~~v~~~m~~----------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~~  132 (133)
T 1y5h_A           73 -TATAGELARD----------SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPEH  132 (133)
T ss_dssp             -TSBHHHHHTT----------CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC--
T ss_pred             -ccCHHHHhcC----------CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence             1234555543          8899999999999999999999999999997 9999999999999987653

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.69  E-value=3.7e-16  Score=131.48  Aligned_cols=123  Identities=17%  Similarity=0.208  Sum_probs=103.9

Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG-NKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      .++++    +|.++ ++++.+++++.++++.|.+++++++||+|+++ ++++|+||.+|+++.+..+..           
T Consensus         5 ~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~-----------   68 (141)
T 2rih_A            5 IRTSE----LLKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----------   68 (141)
T ss_dssp             CBGGG----GCCSC-CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----------
T ss_pred             eEHHH----HhcCC-CeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----------
Confidence            45666    78864 99999999999999999999999999999742 179999999999988654310           


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                                ...++.++|.+++.+++++ ++.++++.|.+++++++||+|++|+++|+||.+||++.+..
T Consensus        69 ----------~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           69 ----------LDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             ----------TTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             ----------CCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence                      0124556677799999999 99999999999999999999988999999999999877653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.69  E-value=4e-16  Score=133.65  Aligned_cols=134  Identities=13%  Similarity=0.200  Sum_probs=109.7

Q ss_pred             ccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353          253 GKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA  331 (426)
Q Consensus       253 ~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~  331 (426)
                      ...++++    +|.+ .+++++.+++++.++++.|.+++++++||+|++| +++|+||.+|+++.+..+..+..      
T Consensus         9 ~~~~v~~----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~------   77 (157)
T 2emq_A            9 MQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY-KLHGLISMTMMMDAILGLERIEF------   77 (157)
T ss_dssp             -CCBSTT----TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTC-CEEEEEEHHHHHHHSBCSSSBCG------
T ss_pred             hhCcHHh----hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCC-CEEEEeeHHHHHHHHhcccccch------
Confidence            3456777    7875 2489999999999999999999999999999887 99999999999988654321110      


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                             ..  ....++.++|.+++.++++++++.++++.|.++++  +||+|++|+++|+||.+||++.+......
T Consensus        78 -------~~--~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~~  143 (157)
T 2emq_A           78 -------ER--LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHR  143 (157)
T ss_dssp             -------GG--GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTCC
T ss_pred             -------HH--hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhhc
Confidence                   00  01124556777799999999999999999999988  99999889999999999999999887654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.69  E-value=1.2e-16  Score=135.90  Aligned_cols=145  Identities=12%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             chhhccccccchhhhcCCCCChhHHHhhhhccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCC
Q 014353           22 PEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPE   99 (426)
Q Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~   99 (426)
                      +.++-||+.+|......  -   ..+.+.+ .++++++  |.+  +++++++++++.+|+++|.++++..+||+|++   
T Consensus         2 ~~~~~~f~~~~~~~~~~--~---~~l~~~l-~~~v~di--m~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~---   70 (149)
T 3k2v_A            2 NAEARGFTAEDFALSHP--G---GALGRKL-LLRVNDI--MHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD---   70 (149)
T ss_dssp             -----------------------CHHHHHT-TSBGGGT--SBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT---
T ss_pred             cccccCCCHHHhhhcCC--C---chhchhc-ccCHHHH--hcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC---
Confidence            34566888776543221  1   1233222 3788888  887  99999999999999999999999999999988   


Q ss_pred             CcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccccc
Q 014353          100 DASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNT  179 (426)
Q Consensus       100 ~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (426)
                           |+++|+||..||++.+....                                                  .....
T Consensus        71 -----~~~~Givt~~dl~~~~~~~~--------------------------------------------------~~~~~   95 (149)
T 3k2v_A           71 -----MNIIGIFTDGDLRRVFDTGV--------------------------------------------------DMRDA   95 (149)
T ss_dssp             -----CBEEEEEEHHHHHHHHCSSS--------------------------------------------------CCTTC
T ss_pred             -----CcEEEEecHHHHHHHHhcCC--------------------------------------------------CcccC
Confidence                 89999999999987654211                                                  12345


Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHH
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIH  238 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~  238 (426)
                      ++.++|..    ++.++.+++++.+++..|.+++++++||+|. + +++|+||..|+++
T Consensus        96 ~v~~~m~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~  148 (149)
T 3k2v_A           96 SIADVMTR----GGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLR  148 (149)
T ss_dssp             BHHHHSEE----SCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTC
T ss_pred             cHHHHcCC----CCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhc
Confidence            78999987    8889999999999999999999999999993 4 9999999999864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.69  E-value=9.8e-17  Score=137.71  Aligned_cols=120  Identities=16%  Similarity=0.316  Sum_probs=101.5

Q ss_pred             hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      +...++++    +|++ .+++++.+++++.++++.|.+++++++||+|+++++++|+||.+|+++.+..+.      .  
T Consensus        35 l~~~~v~d----iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~------~--  102 (156)
T 3oi8_A           35 FSDLEVRD----AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPE------Q--  102 (156)
T ss_dssp             HTTCBGGG----TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCGG------G--
T ss_pred             cCCCCHhh----eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcCC------c--
Confidence            44567888    8986 248999999999999999999999999999986349999999999998754320      1  


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII  399 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll  399 (426)
                           .++.++|          . ++.++++++++.+|++.|.+++++++||+|++|+++|+||.+||+
T Consensus       103 -----~~v~~im----------~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          103 -----FHLKSIL----------R-PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             -----CCHHHHC----------B-CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             -----ccHHHHc----------C-CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                 1244444          2 578999999999999999999999999999999999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.69  E-value=1.6e-16  Score=143.67  Aligned_cols=163  Identities=13%  Similarity=0.169  Sum_probs=104.0

Q ss_pred             cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      .-++..+  |.++++++++++|+.+|+++|.++++..+||+|++        ++++|+||..|+...+            
T Consensus        12 ~~~~~~~--~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------~~l~Givt~~dl~~~~------------   69 (213)
T 1vr9_A           12 HMKVKKW--VTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE--------GHFRGVVNKEDLLDLD------------   69 (213)
T ss_dssp             -CBGGGG--CBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT--------SBEEEEEEGGGGTTSC------------
T ss_pred             ccCHHHh--hcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC--------CEEEEEEEHHHHHhhc------------
Confidence            3445555  78899999999999999999999999999999987        8999999999995210            


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                                                                  ...++.++|.+    ++.++.+++++.+++..|.++
T Consensus        70 --------------------------------------------~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~  101 (213)
T 1vr9_A           70 --------------------------------------------LDSSVFNKVSL----PDFFVHEEDNITHALLLFLEH  101 (213)
T ss_dssp             --------------------------------------------TTSBSGGGCBC----TTCCEETTSBHHHHHHHHHHC
T ss_pred             --------------------------------------------CCCcHHHHccC----CCEEECCCCcHHHHHHHHHHh
Confidence                                                        12368889986    888999999999999999999


Q ss_pred             CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCC
Q 014353          213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIG  292 (426)
Q Consensus       213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~  292 (426)
                      +++++||+| ++++++|++|..|+++.+.....           ..+    .+..-.+.+.....++.++.+.|.+++++
T Consensus       102 ~~~~lpVvd-~~g~lvGiit~~Dil~~~~~~~~-----------~~~----~~~~l~~~~~~~~~~l~~~~~~l~~~~~~  165 (213)
T 1vr9_A          102 QEPYLPVVD-EEMRLKGAVSLHDFLEALIEALA-----------MDV----PGIRFSVLLEDKPGELRKVVDALALSNIN  165 (213)
T ss_dssp             CCSEEEEEC-TTCBEEEEEEHHHHHHHHHHSCC-----------------------------------------------
T ss_pred             CCCEEEEEc-CCCEEEEEEEHHHHHHHHHHHhc-----------CCC----CcEEEEEEeCCCCccHHHHHHHHHHCCCc
Confidence            999999999 47999999999999998764321           111    11111011113334589999999999999


Q ss_pred             eeEEEeCCC
Q 014353          293 GIPVVEKGG  301 (426)
Q Consensus       293 ~lpVvd~~~  301 (426)
                      .++|++.++
T Consensus       166 ~l~V~~~~~  174 (213)
T 1vr9_A          166 ILSVITTRS  174 (213)
T ss_dssp             ---------
T ss_pred             EEEEEEEec
Confidence            999987655

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.69  E-value=3.6e-16  Score=130.09  Aligned_cols=125  Identities=22%  Similarity=0.407  Sum_probs=108.9

Q ss_pred             ccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCC
Q 014353           52 ESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRS  131 (426)
Q Consensus        52 ~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~  131 (426)
                      +.++++++  |.++++++++++++.+|++.|.++++..+||+| +        ++++|+|+..|++.++....       
T Consensus         2 ~~~~v~~i--m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~--------~~~~Givt~~dl~~~~~~~~-------   63 (133)
T 2ef7_A            2 EEEIVKEY--MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G--------NKPVGIITERDIVKAIGKGK-------   63 (133)
T ss_dssp             CCCBGGGT--SBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T--------TEEEEEEEHHHHHHHHHTTC-------
T ss_pred             CcccHHHh--ccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C--------CEEEEEEcHHHHHHHHhcCC-------
Confidence            45778888  888999999999999999999999999999999 6        89999999999987654321       


Q ss_pred             CCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhh
Q 014353          132 SSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSK  211 (426)
Q Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~  211 (426)
                                                                  ....++.++|..    ++.++.+++++.+++..|.+
T Consensus        64 --------------------------------------------~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~   95 (133)
T 2ef7_A           64 --------------------------------------------SLETKAEEFMTA----SLITIREDSPITGALALMRQ   95 (133)
T ss_dssp             --------------------------------------------CTTCBGGGTSEE----CCCCEETTSBHHHHHHHHHH
T ss_pred             --------------------------------------------CcccCHHHHcCC----CCEEECCCCCHHHHHHHHHH
Confidence                                                        113468888876    88899999999999999999


Q ss_pred             cCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          212 YKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       212 ~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      ++.+++||+| ++|+++|++|..|+++.+.+.
T Consensus        96 ~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           96 FNIRHLPVVD-DKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             HTCSEEEEEC-TTSCEEEEEEHHHHHHHHHHH
T ss_pred             cCCCEEEEEC-CCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999 479999999999999988644

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.68  E-value=2.5e-16  Score=133.93  Aligned_cols=120  Identities=18%  Similarity=0.307  Sum_probs=101.3

Q ss_pred             ccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          255 KKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       255 ~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      .++++    +|.+ ++++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+..+..   +.      
T Consensus        28 ~~v~d----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~---~~------   93 (149)
T 3k2v_A           28 LRVND----IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDM-NIIGIFTDGDLRRVFDTGVD---MR------   93 (149)
T ss_dssp             SBGGG----TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTC-BEEEEEEHHHHHHHHCSSSC---CT------
T ss_pred             cCHHH----HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCC-cEEEEecHHHHHHHHhcCCC---cc------
Confidence            46777    8886 1389999999999999999999999999999888 99999999999998765321   11      


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS  400 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~  400 (426)
                       ..++.++|.          +++.++++++++.++++.|.+++++++||+|++ +++|+||..||++
T Consensus        94 -~~~v~~~m~----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           94 -DASIADVMT----------RGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             -TCBHHHHSE----------ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             -cCcHHHHcC----------CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence             123454544          388999999999999999999999999999965 9999999999975

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.68  E-value=4.1e-16  Score=134.43  Aligned_cols=134  Identities=13%  Similarity=0.215  Sum_probs=104.2

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC--CCCeEEEEEeHHHHHHHhhCCcccc-cccccc
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK--GGNKAVGNISLRDIQFLLTAPEIYH-DYRSIT  330 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~--~~~~lvGiIs~~Dl~~~~~~~~~~~-~~~~~~  330 (426)
                      ..++++    +|.++ ++++.+++++.+|++.|.+++++++||+|+  +| +++|+||.+||.+.+..+.... ...   
T Consensus        12 ~~~v~d----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~-~~~Givt~~dl~~~~~~~~~~~~~~~---   82 (164)
T 2pfi_A           12 HVRVEH----FMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ-ILVGIVQRAQLVQALQAEPPSRAPGH---   82 (164)
T ss_dssp             SCBHHH----HCBCC-CCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTC-BEEEEEEHHHHHHHHHC-------CC---
T ss_pred             CCCHHH----HcCCC-CeEECCCCcHHHHHHHHHhCCCCceeEEecCCCC-EEEEEEEHHHHHHHHHhhccccCCcc---
Confidence            356677    78875 899999999999999999999999999996  56 9999999999998875432100 000   


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                          ..++.++|.....    ....+.++.+++++.++++.|.+++++++||+| +|+++|+||.+||++.+.+.
T Consensus        83 ----~~~v~~~m~~~~~----~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~  148 (164)
T 2pfi_A           83 ----QQCLQDILARGCP----TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNL  148 (164)
T ss_dssp             ----CCBHHHHHHTTCC----CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             ----cchhhhhhccccc----ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhh
Confidence                1124455543100    011278999999999999999999999999999 79999999999999999753

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.68  E-value=1.9e-16  Score=136.46  Aligned_cols=131  Identities=20%  Similarity=0.242  Sum_probs=103.2

Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      .++++    +|.++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+....  ...........
T Consensus         5 ~~v~d----im~~~-~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~-~lvGivt~~dl~~~~~~~~--~~~~~~~~~~~   76 (160)
T 2o16_A            5 IKVED----MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDANK-KLLGIVSQRDLLAAQESSL--QRSAQGDSLAF   76 (160)
T ss_dssp             CBGGG----TSEES-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHC--C---------C
T ss_pred             CcHHH----HhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHHHhh--cccccccchhc
Confidence            45666    88775 89999999999999999999999999999887 9999999999998764210  00000000000


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                      ..++.          ++|.+++.++++++++.+|++.|.+++++++||+|+ |+++|+||..||++.+..
T Consensus        77 ~~~v~----------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           77 ETPLF----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             CCBHH----------HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             ccCHH----------HHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            11233          344558999999999999999999999999999997 999999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.67  E-value=3.4e-16  Score=130.05  Aligned_cols=125  Identities=15%  Similarity=0.151  Sum_probs=105.5

Q ss_pred             cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccc
Q 014353          179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLS  258 (426)
Q Consensus       179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~  258 (426)
                      .+++++|.+.  .+++++.+++++.+++..|.+++++++||++.++++++|++|..|+++++......      ...++.
T Consensus         2 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~------~~~~v~   73 (130)
T 3hf7_A            2 VSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF------TKEIML   73 (130)
T ss_dssp             CBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCC------CHHHHH
T ss_pred             cCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCcc------chhhHH
Confidence            3688999631  15789999999999999999999999999974458999999999999988643221      134566


Q ss_pred             ccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       259 ~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      +    +|.  +++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus        74 ~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           74 R----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIV  126 (130)
T ss_dssp             H----HSB--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             H----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC-CEEEEeeHHHHHHHHh
Confidence            6    673  389999999999999999999999999999888 9999999999999864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=5.7e-16  Score=132.91  Aligned_cols=142  Identities=16%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCe-eEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGG-IPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~-lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      +...++++    +|+++ ++++.+++++.+|++.|.++++++ +||+|++  +++|+||.+||++.+...- ...+.  .
T Consensus        13 ~~~~~v~~----im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~-~~~~~--~   82 (157)
T 1o50_A           13 MKVKDVCK----LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHF-FGFIP--K   82 (157)
T ss_dssp             CBHHHHTT----SSCCC-CEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHH-HCCCC---
T ss_pred             hccccHhh----cccCC-CceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhH-Hhhhc--c
Confidence            33456676    88875 999999999999999999999999 9999974  8999999999998753100 00000  0


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                      ...+.....  .....++.++|.+ +.++++++++.+|++.|.+++++++||+|++|+++|+||..||++.+.++.
T Consensus        83 ~~~~~~~~~--~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A           83 EELIRSSMK--RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             ------CCC--CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHHHHH--HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence            000000000  0001133345666 899999999999999999999999999998899999999999999998764

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.67  E-value=7.1e-16  Score=132.65  Aligned_cols=134  Identities=14%  Similarity=0.214  Sum_probs=113.7

Q ss_pred             HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353           46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE  125 (426)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~  125 (426)
                      .+...+..++++++  |.++ +++++++++.+|+++|.++++..+||+|++        ++++|+||..||+.+++... 
T Consensus         9 ~l~~~l~~~~v~~i--m~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~-   76 (159)
T 3fv6_A            9 LLADKLKKLQVKDF--QSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD--------AVLVGVLSRKDLLRASIGQQ-   76 (159)
T ss_dssp             HHHHHHTTCBGGGS--CBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHHTSCS-
T ss_pred             HHHHHHhhCCHHHH--cCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC--------CcEEEEEeHHHHHHHhhccC-
Confidence            47888899999999  8775 599999999999999999999999999987        89999999999988754211 


Q ss_pred             CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353          126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM  205 (426)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~  205 (426)
                                                                       .....++.++|...  .++.++.+++++.++
T Consensus        77 -------------------------------------------------~~~~~~v~~~m~~~--~~~~~v~~~~~l~~a  105 (159)
T 3fv6_A           77 -------------------------------------------------ELTSVPVHIIMTRM--PNITVCRREDYVMDI  105 (159)
T ss_dssp             -------------------------------------------------CTTTCBGGGTSEET--TSCCCBCTTSBHHHH
T ss_pred             -------------------------------------------------cccCcCHHHHHcCC--CCcEEECCCCCHHHH
Confidence                                                             12244688888731  156789999999999


Q ss_pred             HHHHhhcCCcEeEEEeCCCC---eEEEEEeHHHHHHHHHhc
Q 014353          206 LLLLSKYKMKSIPVVDLGEG---TIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       206 l~~l~~~~~~~ipVvd~~~~---~l~Giis~~Dl~~~l~~~  243 (426)
                      +..|.+++++++||+| ++|   +++|+||..|+++++.+.
T Consensus       106 ~~~m~~~~~~~lpVvd-~~g~~~~~vGiit~~dil~~l~~~  145 (159)
T 3fv6_A          106 AKHLIEKQIDALPVIK-DTDKGFEVIGRVTKTNMTKILVSL  145 (159)
T ss_dssp             HHHHHHHTCSEEEEEE-ECSSSEEEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEEe-CCCcceeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999 466   999999999999998643

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.67  E-value=6.8e-17  Score=141.61  Aligned_cols=143  Identities=20%  Similarity=0.304  Sum_probs=104.9

Q ss_pred             cccccccCCcccC-CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCc-------ccccc-
Q 014353          256 KLSEIGLPIMSAN-HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE-------IYHDY-  326 (426)
Q Consensus       256 ~v~~~~~~im~~~-~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~-------~~~~~-  326 (426)
                      ++++    +|.+. +++++.+++++.+|++.|.+++++++||+|+++ +++|+||.+||+++.....       .+... 
T Consensus         5 ~v~d----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~   79 (180)
T 3sl7_A            5 TVGD----FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW-TLVGVVSDYDLLALDSISGRSQNDTNLFPDVD   79 (180)
T ss_dssp             BHHH----HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHTCC------------------
T ss_pred             eHHH----hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCC-eEEEEEEHHHHHhhhhhccccCCccccccccc
Confidence            4556    77761 489999999999999999999999999999888 9999999999986432110       00000 


Q ss_pred             -ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          327 -RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       327 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                       .......+......  ....++.++|.+++.++++++++.+|+++|.+++++++||+|++|+++|+||.+||++++...
T Consensus        80 ~~~~~~~~~~~~~~~--~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~  157 (180)
T 3sl7_A           80 STWKTFNELQKLISK--TYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI  157 (180)
T ss_dssp             -CCCSHHHHHHHHHT--TTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHhc--cccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence             00000011110010  011244556666899999999999999999999999999999999999999999999999753

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.67  E-value=3.2e-16  Score=129.95  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=104.0

Q ss_pred             cccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353          177 KNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK  256 (426)
Q Consensus       177 ~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~  256 (426)
                      ...+++++|.+.  .++.++.+++++.+++..|.+++++++||+|.+.++++|++|..|+++++...          ..+
T Consensus         3 ~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~----------~~~   70 (129)
T 3jtf_A            3 AERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP----------ALD   70 (129)
T ss_dssp             -CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT----------TSC
T ss_pred             CCCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC----------CcC
Confidence            356799999831  16789999999999999999999999999994238999999999998776421          346


Q ss_pred             ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      +.+    +|++  ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus        71 v~~----~m~~--~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g-~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           71 IRS----LVRP--AVFIPEVKRLNVLLREFRASRNHLAIVIDEHG-GISGLVTMEDVLEQIV  125 (129)
T ss_dssp             GGG----GCBC--CCEEETTCBHHHHHHHHHTSSCCEEEEECC-C-CEEEEEEHHHHHHHHH
T ss_pred             HHH----HhCC--CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHh
Confidence            777    6753  88999999999999999999999999999988 9999999999998864

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.67  E-value=3.9e-16  Score=130.65  Aligned_cols=127  Identities=24%  Similarity=0.398  Sum_probs=109.1

Q ss_pred             hhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHH-HHHHHhhcCCCC
Q 014353           50 CFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGI-AVWILHQSEPPS  128 (426)
Q Consensus        50 ~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di-~~~l~~~~~~~~  128 (426)
                      .+..++++++  |.++++++++++++.+|+++|.++++..+||+|++        ++++|+|+..|+ ..++...     
T Consensus         4 ~l~~~~v~~i--m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~-----   68 (138)
T 2p9m_A            4 TLKNIKVKDV--MTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE--------NKVIGIVTTTDIGYNLIRDK-----   68 (138)
T ss_dssp             -CTTCBGGGT--SBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT--------CBEEEEEEHHHHHHHHTTTC-----
T ss_pred             ccccCCHHHh--hcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCC--------CeEEEEEEHHHHHHHHHhhc-----
Confidence            4567888888  88899999999999999999999999999999987        899999999999 7653211     


Q ss_pred             CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353          129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL  208 (426)
Q Consensus       129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~  208 (426)
                                                                    .....++.++|..    ++.++.+++++.+++..
T Consensus        69 ----------------------------------------------~~~~~~v~~~m~~----~~~~v~~~~~l~~~~~~   98 (138)
T 2p9m_A           69 ----------------------------------------------YTLETTIGDVMTK----DVITIHEDASILEAIKK   98 (138)
T ss_dssp             ----------------------------------------------CCSSCBHHHHSCS----SCCCEETTSBHHHHHHH
T ss_pred             ----------------------------------------------ccCCcCHHHHhCC----CcEEECCCCCHHHHHHH
Confidence                                                          1124578889986    78899999999999999


Q ss_pred             HhhcC-----CcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          209 LSKYK-----MKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       209 l~~~~-----~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      |.+++     ++++||+| ++|+++|++|..|+++++.+
T Consensus        99 ~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           99 MDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             HTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             HHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence            99999     99999999 47999999999999998753

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=2.7e-16  Score=142.21  Aligned_cols=163  Identities=16%  Similarity=0.210  Sum_probs=105.2

Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      ..+++++|..    +++++.+++++.+++..|.+++++++||+| ++++++|++|..|+...+.            ..++
T Consensus        12 ~~~~~~~~~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-~~~~l~Givt~~dl~~~~~------------~~~v   74 (213)
T 1vr9_A           12 HMKVKKWVTQ----DFPMVEESATVRECLHRMRQYQTNECIVKD-REGHFRGVVNKEDLLDLDL------------DSSV   74 (213)
T ss_dssp             -CBGGGGCBS----CSCEEETTCBHHHHHHHHHHTTSSEEEEEC-TTSBEEEEEEGGGGTTSCT------------TSBS
T ss_pred             ccCHHHhhcC----CCeEECCCCcHHHHHHHHHHCCCCEEEEEc-CCCEEEEEEEHHHHHhhcC------------CCcH
Confidence            4567888887    889999999999999999999999999999 4799999999999865432            2467


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHH
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTA  337 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~  337 (426)
                      .+    +|.++ ++++.+++++.++++.|.+++++++||+|++| +++|+||.+|+++.+.....        ..+....
T Consensus        75 ~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGiit~~Dil~~~~~~~~--------~~~~~~~  140 (213)
T 1vr9_A           75 FN----KVSLP-DFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALIEALA--------MDVPGIR  140 (213)
T ss_dssp             GG----GCBCT-TCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHHHSCC---------------
T ss_pred             HH----HccCC-CEEECCCCcHHHHHHHHHHhCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHHhc--------CCCCcEE
Confidence            77    78874 89999999999999999999999999999887 99999999999988643210        0011110


Q ss_pred             HHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 014353          338 VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG  387 (426)
Q Consensus       338 v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~  387 (426)
                      +                .+.+.....++.++.+.|.+++++.++|++.+|
T Consensus       141 l----------------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          141 F----------------SVLLEDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             --------------------------------------------------
T ss_pred             E----------------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            0                111223334599999999999999999987544

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.66  E-value=5.1e-16  Score=133.74  Aligned_cols=132  Identities=17%  Similarity=0.247  Sum_probs=110.3

Q ss_pred             cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      .++++++  |.++++++++++|+.+|+++|.++++..+||+|++        |+++|+||..||+.++........    
T Consensus         4 ~~~v~di--m~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------~~lvGivt~~dl~~~~~~~~~~~~----   69 (160)
T 2o16_A            4 MIKVEDM--MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN--------KKLLGIVSQRDLLAAQESSLQRSA----   69 (160)
T ss_dssp             CCBGGGT--SEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHHHCC-------
T ss_pred             cCcHHHH--hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHHHHHhhcccc----
Confidence            4677777  88899999999999999999999999999999987        899999999999988765321100    


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                                                            .........++.++|..    ++.++.+++++.+++..|.++
T Consensus        70 --------------------------------------~~~~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~  107 (160)
T 2o16_A           70 --------------------------------------QGDSLAFETPLFEVMHT----DVTSVAPQAGLKESAIYMQKH  107 (160)
T ss_dssp             --------------------------------------------CCCBHHHHSCS----CEEEBCTTSBHHHHHHHHHHT
T ss_pred             --------------------------------------cccchhcccCHHHHhcC----CCeEECCCCCHHHHHHHHHHh
Confidence                                                  00112235679999987    889999999999999999999


Q ss_pred             CCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      +++++||+| + |+++|+||..|+++++..
T Consensus       108 ~~~~lpVvd-~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A          108 KIGCLPVVA-K-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             TCSCEEEEE-T-TEEEEEECHHHHHHHHHH
T ss_pred             CCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            999999999 4 999999999999998754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.66  E-value=4.3e-16  Score=128.87  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=106.7

Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      ..+++++|.+    ++.++.+++++.+++..|.+++++++||+| + ++++|++|..|+++.+.....       ...++
T Consensus         4 s~~v~~~m~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-------~~~~v   70 (128)
T 3gby_A            4 SVTFSYLAET----DYPVFTLGGSTADAARRLAASGCACAPVLD-G-ERYLGMVHLSRLLEGRKGWPT-------VKEKL   70 (128)
T ss_dssp             TCBGGGGCBC----CSCCEETTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHTTCSSSCC-------TTCBC
T ss_pred             ceEHHHhhcC----CcceECCCCCHHHHHHHHHHCCCcEEEEEE-C-CEEEEEEEHHHHHHHHhhCCc-------ccCcH
Confidence            4578999997    888999999999999999999999999999 4 999999999999887643321       02456


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .+    +|.++ +.++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++++.
T Consensus        71 ~~----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~  125 (128)
T 3gby_A           71 GE----ELLET-VRSYRPGEQLFDNLISVAAAKCSVVPLADEDG-RYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CG----GGCBC-CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred             HH----HccCC-CcEECCCCCHHHHHHHHHhCCCcEEEEECCCC-CEEEEEEHHHHHHHHH
Confidence            66    78764 89999999999999999999999999999888 9999999999999864

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.66  E-value=6.7e-16  Score=136.21  Aligned_cols=125  Identities=22%  Similarity=0.319  Sum_probs=106.2

Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      .++++    +|.++ ++++.+++++.+|++.|.+++++++||+|++| +++|+|+.+||+..+.....  .         
T Consensus         9 ~~v~~----im~~~-~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g-~~vGivt~~dl~~~~~~~~~--~---------   71 (184)
T 1pvm_A            9 MRVEK----IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG-NDVGLLSERSIIKRFIPRNK--K---------   71 (184)
T ss_dssp             CBGGG----TSBTT-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHTGGGCC--C---------
T ss_pred             cCHHH----hcCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHhhccc--C---------
Confidence            46666    78764 99999999999999999999999999999877 99999999999987642110  0         


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                              ....++.++|.+++.++.+++++.+|+++|.+++++++||+|++|+++|+||..||++++.+
T Consensus        72 --------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           72 --------PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             --------GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             --------cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                    00114556677789999999999999999999999999999988999999999999988766

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.66  E-value=1.8e-15  Score=124.27  Aligned_cols=121  Identities=23%  Similarity=0.235  Sum_probs=105.6

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      +++++|.+    ++.++.+++++.+++..|.+++.+++||+|  +++++|+++..|+++.+.....      ....++.+
T Consensus         2 ~v~~~m~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~~------~~~~~v~~   69 (125)
T 1pbj_A            2 RVEDVMVT----DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD------LAEVKVWE   69 (125)
T ss_dssp             CHHHHCBC----SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred             CHHHhcCC----CceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCCc------ccccCHHH
Confidence            57788886    888999999999999999999999999999  6999999999999988765422      12456777


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                          +|.+. +.++.+++++.++++.|.+++++++||+|+ | +++|+||.+|+++++..
T Consensus        70 ----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~-~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 ----VMERD-LVTISPRATIKEAAEKMVKNVVWRLLVEED-D-EIIGVISATDILRAKMA  122 (125)
T ss_dssp             ----HCBCG-GGEECTTSCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHC-
T ss_pred             ----HcCCC-CeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence                77764 899999999999999999999999999998 7 99999999999998653

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.66  E-value=2.1e-16  Score=135.10  Aligned_cols=124  Identities=18%  Similarity=0.202  Sum_probs=108.5

Q ss_pred             hccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceee-ecCCCCCcccccceEEEeehHHHHHHHHhhcCCC
Q 014353           51 FESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVV-DVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPP  127 (426)
Q Consensus        51 ~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVv-d~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~  127 (426)
                      +..++++++  |++  +++++++++++.+|+++|.++++.++||+ |++.       ++++|+||..||+.++....   
T Consensus        17 l~~~~v~~i--M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~-------~~lvGivt~~dl~~~~~~~~---   84 (153)
T 3oco_A           17 MNDKVASDV--MVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDK-------DKIIGYAYNYDIVRQARIDD---   84 (153)
T ss_dssp             HHHCBHHHH--SEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEE-------EEEEEEEEHHHHHHHHHHHT---
T ss_pred             cCCCEeeeE--ecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCC-------CcEEEEEEHHHHHhHHhcCC---
Confidence            456888888  765  89999999999999999999999999999 6432       89999999999997755321   


Q ss_pred             CCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHH
Q 014353          128 SPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLL  207 (426)
Q Consensus       128 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~  207 (426)
                                                                        ..++.++| .    ++.++.+++++.+++.
T Consensus        85 --------------------------------------------------~~~v~~~m-~----~~~~v~~~~~l~~~~~  109 (153)
T 3oco_A           85 --------------------------------------------------KAKISTIM-R----DIVSVPENMKVPDVME  109 (153)
T ss_dssp             --------------------------------------------------TSBGGGTC-B----CCEEEETTSBHHHHHH
T ss_pred             --------------------------------------------------CCcHHHHh-C----CCeEECCCCCHHHHHH
Confidence                                                              34688888 5    8899999999999999


Q ss_pred             HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      .|.+++++++||+| ++|+++|+||..|+++.+..
T Consensus       110 ~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A          110 EMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             HHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred             HHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence            99999999999999 47999999999999999864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.66  E-value=1.9e-15  Score=127.17  Aligned_cols=120  Identities=21%  Similarity=0.299  Sum_probs=105.4

Q ss_pred             cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCC--eEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353          179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEG--TIDNIITQSSVIHMLAECAGLEWFESWGKKK  256 (426)
Q Consensus       179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~--~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~  256 (426)
                      .+++++|.+    ++.++.+++++.+++..|.+++++++||+| +++  +++|++|..|+++++.....       ...+
T Consensus         5 ~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~~~Givt~~dl~~~~~~~~~-------~~~~   72 (141)
T 2rih_A            5 IRTSELLKR----PPVSLPETATIREVATELAKNRVGLAVLTA-RDNPKRPVAVVSERDILRAVAQRLD-------LDGP   72 (141)
T ss_dssp             CBGGGGCCS----CCEEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEEEEHHHHHHHHHTTCC-------TTSB
T ss_pred             eEHHHHhcC----CCeEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCcceeEEEEEHHHHHHHHhcCCC-------CCCC
Confidence            478899987    889999999999999999999999999999 467  99999999999998764321       1356


Q ss_pred             ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353          257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL  317 (426)
Q Consensus       257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~  317 (426)
                      +.+    +|.++ ++++.++ ++.++++.|.+++++.+||+|++| +++|+||.+||++..
T Consensus        73 v~~----~m~~~-~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~  126 (141)
T 2rih_A           73 AMP----IANSP-ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFER  126 (141)
T ss_dssp             SGG----GCBCC-CEEETTS-BHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCH
T ss_pred             HHH----HcCCC-CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCC-cEEEEEEHHHHHHHH
Confidence            777    78764 9999999 999999999999999999999887 999999999998774

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.66  E-value=3.3e-16  Score=129.42  Aligned_cols=122  Identities=19%  Similarity=0.299  Sum_probs=104.2

Q ss_pred             cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      .+++++|.+.  .++.++.+++++.+++..|.+++++++||+|. + ++++|++|..|+++.+....        ...++
T Consensus         3 ~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~~--------~~~~v   71 (127)
T 3nqr_A            3 QRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHIEGILMAKDLLPFMRSDA--------EAFSM   71 (127)
T ss_dssp             CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGSTTC--------CCCCH
T ss_pred             cCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhccC--------CCCCH
Confidence            4788999851  13889999999999999999999999999994 5 89999999999988764321        13567


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .+    +|++  ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus        72 ~~----~m~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           72 DK----VLRT--AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIV  125 (127)
T ss_dssp             HH----HCBC--CCEEETTCBHHHHHHHHHHTTCCEEEEECTTS-CEEEEEEHHHHHHHC-
T ss_pred             HH----HcCC--CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHh
Confidence            77    7754  78999999999999999999999999999888 9999999999998853

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.65  E-value=1.8e-15  Score=139.62  Aligned_cols=145  Identities=16%  Similarity=0.240  Sum_probs=106.7

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHHHhhCCc----cc-cc--
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG-NKAVGNISLRDIQFLLTAPE----IY-HD--  325 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~~~~~~----~~-~~--  325 (426)
                      ...+++    +|+++ ++++.+++++.++.++|.+++++++||||+++ ++++|+||++||++++....    .. ..  
T Consensus        12 ~~~v~d----iMt~~-vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A           12 NIQVGD----IMVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             SCBTTS----SSBSS-CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             CCChHH----hcCCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            345666    89875 99999999999999999999999999999742 38999999999998764220    00 00  


Q ss_pred             ------------------------ccc-----------------------------------------------------
Q 014353          326 ------------------------YRS-----------------------------------------------------  328 (426)
Q Consensus       326 ------------------------~~~-----------------------------------------------------  328 (426)
                                              +..                                                     
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                                    000                                                     


Q ss_pred             ----ccHHHHHHHHHHHhhhcCCCC-CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          329 ----ITAKNFLTAVRKYMEEHHHED-SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       329 ----~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                          ++..+...-..+.+...-... .+|.+.|+++.++++|.+|..+|...+++++||++ .|+++||||+.||++++.
T Consensus       167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                000000000011122211113 36889999999999999999999999999999998 699999999999999987


Q ss_pred             h
Q 014353          404 H  404 (426)
Q Consensus       404 ~  404 (426)
                      +
T Consensus       246 ~  246 (250)
T 2d4z_A          246 G  246 (250)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.65  E-value=4.3e-16  Score=133.92  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=105.8

Q ss_pred             cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353          254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK  332 (426)
Q Consensus       254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~  332 (426)
                      ..++++    +|.+ ++++++.+++++.++++.|.+++++++||+|++| +++|+||.+||+..+.....+...     .
T Consensus        13 ~~~v~~----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~-~lvGivt~~dl~~~~~~~~~~~~~-----~   82 (159)
T 1yav_A           13 EATVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY-RLHGLIGTNMIMNSIFGLERIEFE-----K   82 (159)
T ss_dssp             TCBHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTC-BEEEEEEHHHHHHHHBCSSSBCGG-----G
T ss_pred             HhhHHH----HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCC-CEEEEeEHHHHHHHhhhhcccchh-----h
Confidence            456777    7775 1389999999999999999999999999999888 999999999999987553211000     0


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                      ....++.++|          .+++.++.+++++.++++.|.++++  +||+|++|+++|+||.+||++.+.++...
T Consensus        83 ~~~~~v~~~m----------~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~  146 (159)
T 1yav_A           83 LDQITVEEVM----------LTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRS  146 (159)
T ss_dssp             TTTSBHHHHS----------BCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             hccCCHHHhc----------CCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHh
Confidence            0112344444          4488999999999999999999987  99999889999999999999999866543

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.65  E-value=4.8e-16  Score=130.16  Aligned_cols=125  Identities=11%  Similarity=0.194  Sum_probs=104.9

Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      ..+++++|.+.  .++.++.+++++.+++..|.+++++++||+|.+.++++|++|..|+++++....       ....++
T Consensus         2 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-------~~~~~v   72 (136)
T 3lfr_A            2 DLQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-------GDSDDV   72 (136)
T ss_dssp             -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-------GGGCCG
T ss_pred             CCChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-------CCCcCH
Confidence            34788999831  167899999999999999999999999999942279999999999988765221       124567


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .+    +|++  ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus        73 ~~----~m~~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           73 KK----LLRP--ATFVPESKRLNVLLREFRANHNHMAIVIDEYG-GVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GG----TCBC--CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHTTC-
T ss_pred             HH----HcCC--CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHh
Confidence            77    7864  89999999999999999999999999999988 9999999999998864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.64  E-value=2.5e-16  Score=133.92  Aligned_cols=140  Identities=23%  Similarity=0.303  Sum_probs=108.2

Q ss_pred             ccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCC
Q 014353           52 ESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSP  129 (426)
Q Consensus        52 ~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~  129 (426)
                      +.++++++  |.+  +++++++++++.+|+++|.++++..+||+|++        ++++|+||..||+.++......   
T Consensus         3 ~~~~v~~i--m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~G~vt~~dl~~~~~~~~~~---   69 (152)
T 4gqw_A            3 GVYTVGEF--MTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED--------WKLVGLVSDYDLLALDSGDSTW---   69 (152)
T ss_dssp             CCSBGGGT--SEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHTTCC----CC---
T ss_pred             ceEEhhhc--cCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC--------CeEEEEEEHHHHHHhhcccCcc---
Confidence            45778887  765  89999999999999999999999999999988        8999999999997532211000   


Q ss_pred             CCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHH
Q 014353          130 RSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLL  209 (426)
Q Consensus       130 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l  209 (426)
                                      .                  .+...-.........++.++|..    ++.++.+++++.+++..|
T Consensus        70 ----------------~------------------~~~~~~~~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~a~~~~  111 (152)
T 4gqw_A           70 ----------------K------------------TFNAVQKLLSKTNGKLVGDLMTP----APLVVEEKTNLEDAAKIL  111 (152)
T ss_dssp             ----------------H------------------HHHHHHTC-----CCBHHHHSEE----SCCCEESSSBHHHHHHHH
T ss_pred             ----------------c------------------chHHHHHHHHHhccccHHHhcCC----CceEECCCCcHHHHHHHH
Confidence                            0                  00000000012235679999987    788999999999999999


Q ss_pred             hhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          210 SKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       210 ~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      .+++++++||+| ++|+++|+||..|+++++.+.
T Consensus       112 ~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A          112 LETKYRRLPVVD-SDGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             HHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC-
T ss_pred             HHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHhc
Confidence            999999999999 489999999999999998643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.64  E-value=1.5e-15  Score=129.04  Aligned_cols=132  Identities=22%  Similarity=0.296  Sum_probs=109.9

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      .+...+++++|.+.  .++.++.+++++.+++..|.+++++++||+| ++++++|++|..|+++.+....... ......
T Consensus        11 ~l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~   86 (150)
T 3lqn_A           11 EFQQIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLD-PMYKLHGLISTAMILDGILGLERIE-FERLEE   86 (150)
T ss_dssp             HHHHCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHTBCSSSBC-GGGGGG
T ss_pred             hhhcCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCCEEEEEEHHHHHHHHHhhcccc-hhHHhc
Confidence            35567899999841  1588999999999999999999999999999 4899999999999999885332211 122335


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .++.+    +|.++ ++++.+++++.++++.|.++++  +||+|++| +++|+||.+||++++.
T Consensus        87 ~~v~~----~m~~~-~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g-~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           87 MKVEQ----VMKQD-IPVLKLEDSFAKALEMTIDHPF--ICAVNEDG-YFEGILTRRAILKLLN  142 (150)
T ss_dssp             CBGGG----TCBSS-CCEEETTCBHHHHHHHHHHCSE--EEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred             CCHHH----HhcCC-CceeCCCCCHHHHHHHHHhCCE--EEEECCCC-cEEEEEEHHHHHHHHH
Confidence            67777    78864 8999999999999999999987  99999888 9999999999999864

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.64  E-value=4.6e-15  Score=124.12  Aligned_cols=125  Identities=19%  Similarity=0.305  Sum_probs=107.3

Q ss_pred             ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHH-HHhccCcchhhhhcc
Q 014353          176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHM-LAECAGLEWFESWGK  254 (426)
Q Consensus       176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~-l~~~~~~~~~~~~~~  254 (426)
                      +...+++++|..    ++.++.+++++.+++..|.+++++++||+| ++++++|+++..|+++. +....       ...
T Consensus         4 l~~~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~-------~~~   71 (138)
T 2yzi_A            4 DMKAPIKVYMTK----KLLGVKPSTSVQEASRLMMEFDVGSLVVIN-DDGNVVGFFTKSDIIRRVIVPGL-------PYD   71 (138)
T ss_dssp             CTTSBGGGTCBC----CCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTTTCC-------CTT
T ss_pred             hhhhhHHHHhcC----CCeEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEeHHHHHHHHHhcCC-------ccc
Confidence            345689999986    888999999999999999999999999999 47999999999999854 33221       123


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                      .++.+    +|.++ ++++.+++++.++++.|.+++++++ |+|++| +++|+||.+||++.+..
T Consensus        72 ~~v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g-~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           72 IPVER----IMTRN-LITANVNTPLGEVLRKMAEHRIKHI-LIEEEG-KIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             SBGGG----TCBCS-CCEEETTSBHHHHHHHHHHHTCSEE-EEEETT-EEEEEEEHHHHHHHHHC
T ss_pred             CCHHH----HhhCC-CeEECCCCcHHHHHHHHHhcCCCEE-EECCCC-CEEEEEEHHHHHHHHHH
Confidence            56777    78764 8999999999999999999999999 999888 99999999999998754

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.64  E-value=2e-16  Score=135.71  Aligned_cols=143  Identities=16%  Similarity=0.289  Sum_probs=116.4

Q ss_pred             cccccchhhhcCC-----CCChhHH--Hhhh--hccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeec
Q 014353           27 GMKVEDLWDVLEP-----QLSPTEK--LNAC--FESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDV   95 (426)
Q Consensus        27 ~~~~~~~~~~l~~-----~~~~~~~--~~~~--~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~   95 (426)
                      ++|+++|...++.     .++.++.  +++.  |..++++++  |++  +++++++++++.+|+++|.++++..+||+|+
T Consensus         2 ~~t~~el~~li~~~~~~g~l~~~e~~~i~~~~~l~~~~v~di--M~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~   79 (156)
T 3oi8_A            2 NASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDA--MITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE   79 (156)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCBGGGT--CEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS
T ss_pred             CCCHHHHHHHHHhHHhcCCcCHHHHHHHHHHhccCCCCHhhe--eeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC
Confidence            4677777777632     3776542  4433  557899998  865  8999999999999999999999999999998


Q ss_pred             CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccc
Q 014353           96 DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEF  175 (426)
Q Consensus        96 ~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (426)
                      +.       ++++|+||..|++.++..                                                  .  
T Consensus        80 ~~-------~~lvGivt~~dl~~~~~~--------------------------------------------------~--  100 (156)
T 3oi8_A           80 DK-------DEVLGILHAKDLLKYMFN--------------------------------------------------P--  100 (156)
T ss_dssp             ST-------TCEEEEEEGGGGGGGSSC--------------------------------------------------G--
T ss_pred             CC-------CcEEEEEEHHHHHHHHHc--------------------------------------------------C--
Confidence            72       499999999999643110                                                  0  


Q ss_pred             ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHH
Q 014353          176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVI  237 (426)
Q Consensus       176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~  237 (426)
                       ...++.++|.     ++.++.+++++.+++..|.+++++++||+| ++|+++|+||..|++
T Consensus       101 -~~~~v~~im~-----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 -EQFHLKSILR-----PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII  155 (156)
T ss_dssp             -GGCCHHHHCB-----CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred             -CcccHHHHcC-----CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence             2456888996     677999999999999999999999999999 479999999999975

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.64  E-value=4.7e-15  Score=128.32  Aligned_cols=132  Identities=20%  Similarity=0.224  Sum_probs=111.8

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      .....+++++|.+. ..++.++.+++++.+++..|.+++++++||+| ++++++|+||..|+++.+.....     ....
T Consensus        20 ~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~-----~~~~   92 (165)
T 3fhm_A           20 QGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD-ADGVVLGIFTERDLVKAVAGQGA-----ASLQ   92 (165)
T ss_dssp             SSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHHHGG-----GGGT
T ss_pred             hhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHHhcCC-----cccc
Confidence            45567899999841 01588999999999999999999999999999 47999999999999998864321     1224


Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                      .++.+    +|.++ ++++.+++++.++++.|.+++++++||+|+ | +++|+||..||++++...
T Consensus        93 ~~v~~----~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A           93 QSVSV----AMTKN-VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G-RLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             SBGGG----TSBSS-CCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHTTCC
T ss_pred             CCHHH----HhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHHH
Confidence            67777    78764 899999999999999999999999999999 7 999999999999997543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.64  E-value=1.5e-15  Score=133.69  Aligned_cols=148  Identities=17%  Similarity=0.259  Sum_probs=107.5

Q ss_pred             cccccccccCCcccCC---eeEe--CCCCcHHHHHHHHHhcCCCeeEEE--eCCCCeEEEEEeHHHHHHHhhCCcccc-c
Q 014353          254 KKKLSEIGLPIMSANH---IVKV--YEDEPVLQAFKLMRRKKIGGIPVV--EKGGNKAVGNISLRDIQFLLTAPEIYH-D  325 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~---~~~v--~~~~~v~~a~~~m~~~~~~~lpVv--d~~~~~lvGiIs~~Dl~~~~~~~~~~~-~  325 (426)
                      ..++++    +|.+..   ++++  .+++++.+|++.|.+++++++||+  |++| +++|+||.+|+++.+..+.... .
T Consensus        10 ~~~v~d----im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~-~lvGiit~~dl~~~~~~~~~~~~~   84 (185)
T 2j9l_A           10 KTLAMD----VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ-RLVGFVLRRDLIISIENARKKQDG   84 (185)
T ss_dssp             CCBHHH----HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTC-BEEEEEEHHHHHHHHHHHHTSCSC
T ss_pred             cCcHHH----HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCC-eEEEEEEHHHHHHHHHhhcccCCC
Confidence            456777    787631   6788  999999999999999999999999  6777 9999999999998864321000 0


Q ss_pred             cccccHHHHHHH---HHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          326 YRSITAKNFLTA---VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       326 ~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                      +.......+...   .........++.++|.+++.++++++++.+|++.|.+++++++||+| +|+++|+||..||++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l  163 (185)
T 2j9l_A           85 VVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI  163 (185)
T ss_dssp             CCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            000000000000   00000011245567777999999999999999999999999999999 89999999999999999


Q ss_pred             HhCCC
Q 014353          403 VHEPP  407 (426)
Q Consensus       403 ~~~~~  407 (426)
                      .+...
T Consensus       164 ~~~~~  168 (185)
T 2j9l_A          164 AQMAN  168 (185)
T ss_dssp             HHHCC
T ss_pred             HHhhc
Confidence            75543

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.63  E-value=1.1e-15  Score=131.00  Aligned_cols=120  Identities=24%  Similarity=0.379  Sum_probs=99.9

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      +++++.+++++.+|++.|.+++++++||+| +| +++|+||.+|+++.+......  ..       ..++.++|      
T Consensus        22 ~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~-~~~Givt~~dl~~~~~~~~~~--~~-------~~~v~~~m------   84 (157)
T 4fry_A           22 TIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GD-DIAGIVTERDYARKVVLQERS--SK-------ATRVEEIM------   84 (157)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEES-SS-SEEEEEEHHHHHHHSGGGTCC--SS-------SCBHHHHS------
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEee-CC-EEEEEEEHHHHHHHHHhccCC--cc-------ccCHHHHc------
Confidence            379999999999999999999999999955 56 999999999999886543210  00       12344444      


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF  410 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~  410 (426)
                          .+++.++.+++++.+++++|.+++++++||+| +|+++|+||.+||++++..+.....
T Consensus        85 ----~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~~~  141 (157)
T 4fry_A           85 ----TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQFTI  141 (157)
T ss_dssp             ----BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCCCC
T ss_pred             ----CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHhhH
Confidence                44889999999999999999999999999999 7999999999999999998765433

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.63  E-value=3.3e-15  Score=140.71  Aligned_cols=127  Identities=24%  Similarity=0.355  Sum_probs=105.2

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc-----CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK-----KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY  326 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~  326 (426)
                      +...++++    +|+++ ++++.+++++.++++.|.+.     +++++||+|+++ +++|+||.+|++...  .      
T Consensus       132 ~~~~~v~~----iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~-~lvGivt~~dll~~~--~------  197 (278)
T 2yvy_A          132 YEEDEAGG----LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG-RLKGVLSLRDLIVAD--P------  197 (278)
T ss_dssp             SCTTBGGG----TCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTC-BEEEEEEHHHHHHSC--T------
T ss_pred             CCcchHHh----hcCCC-ceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCC-CEEEEEEHHHHhcCC--C------
Confidence            33456777    89875 99999999999999999987     789999999887 999999999998641  1      


Q ss_pred             ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          327 RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       327 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                                        ..++.++|.+++.+|++++++.++++.|.+++++++||||++|+++|+||..||++.+.++.
T Consensus       198 ------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~  259 (278)
T 2yvy_A          198 ------------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  259 (278)
T ss_dssp             ------------------TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC----
T ss_pred             ------------------CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHh
Confidence                              12566777779999999999999999999999999999999999999999999999998776


Q ss_pred             CCcc
Q 014353          407 PGYF  410 (426)
Q Consensus       407 ~~~~  410 (426)
                      ...+
T Consensus       260 ~ed~  263 (278)
T 2yvy_A          260 TEDI  263 (278)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            5443

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.63  E-value=2.8e-15  Score=130.97  Aligned_cols=133  Identities=15%  Similarity=0.194  Sum_probs=110.9

Q ss_pred             CChhHH--Hhhh--hccCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehH
Q 014353           41 LSPTEK--LNAC--FESIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFA  114 (426)
Q Consensus        41 ~~~~~~--~~~~--~~~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~  114 (426)
                      ++.++.  ++..  |..+++.++  |+  ++++++++++++.+|+++|.++++.++||+|.+.       ++++|+|+..
T Consensus        19 l~~~e~~~i~~~l~l~~~~v~di--M~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~   89 (173)
T 3ocm_A           19 FGVEERNMVSGVLTLAERSIRSI--MTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSL-------DEVVGIGRAK   89 (173)
T ss_dssp             CCHHHHHHHHHHHHHTTSCSTTT--SEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSST-------TSEEEEEEHH
T ss_pred             cCHHHHHHHHHHhccCCCCHHHh--CCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CCEEEEEEHH
Confidence            666543  4443  567899998  84  5799999999999999999999999999999754       7999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcE
Q 014353          115 GIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFL  194 (426)
Q Consensus       115 di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~  194 (426)
                      ||+.++....                                                     ..++. ++.     ++.
T Consensus        90 Dl~~~~~~~~-----------------------------------------------------~~~v~-~~~-----~~~  110 (173)
T 3ocm_A           90 DLVADLITEG-----------------------------------------------------RVRRN-RLR-----DPI  110 (173)
T ss_dssp             HHHHHHHHHS-----------------------------------------------------SCCGG-GSB-----CCC
T ss_pred             HHHHHHhcCC-----------------------------------------------------cchhH-hcC-----CCe
Confidence            9987754321                                                     12455 443     778


Q ss_pred             EecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          195 ALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       195 ~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      ++.+++++.+++..|.+++++.+||+| ++|+++|+||..|++..+..
T Consensus       111 ~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          111 IVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             EECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred             EECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence            999999999999999999999999999 48999999999999999864

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.62  E-value=6.7e-15  Score=122.70  Aligned_cols=122  Identities=15%  Similarity=0.253  Sum_probs=105.0

Q ss_pred             chhhhcc---ccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353          180 KVRDIAG---SFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK  256 (426)
Q Consensus       180 ~v~~i~~---~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~  256 (426)
                      +++++|.   .    ++.++.+++++.+++..|.+++++++||+|  +++++|+++..|+++.+.....     .....+
T Consensus         7 ~v~~im~~~~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~-----~~~~~~   75 (135)
T 2rc3_A            7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDK-----PVKDTQ   75 (135)
T ss_dssp             BHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSSS-----CGGGSB
T ss_pred             eHHHHHhcCCC----CcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHHcCC-----CcccCC
Confidence            6889998   5    888999999999999999999999999998  6899999999999875432210     112456


Q ss_pred             ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                      +.+    +|.++ +.++.+++++.++++.|.+++++.+||+| +| +++|+||.+|+++++..
T Consensus        76 v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           76 VKE----IMTRQ-VAYVDLNNTNEDCMALITEMRVRHLPVLD-DG-KVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             GGG----TSBCS-CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHC
T ss_pred             HHH----hccCC-CeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC-EEEEEEEHHHHHHHHHh
Confidence            777    78774 89999999999999999999999999999 67 99999999999998754

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.62  E-value=1.5e-15  Score=126.24  Aligned_cols=123  Identities=15%  Similarity=0.289  Sum_probs=105.2

Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHH-HHHhccCcchhhhhcccc
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIH-MLAECAGLEWFESWGKKK  256 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~-~l~~~~~~~~~~~~~~~~  256 (426)
                      ..+++++|.+    ++.++.+++++.+++..|.+++++++||+| ++++++|+++..|++. ++.....      ....+
T Consensus         7 ~~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~~------~~~~~   75 (133)
T 1y5h_A            7 MTTARDIMNA----GVTCVGEHETLTAAAQYMREHDIGALPICG-DDDRLHGMLTDRDIVIKGLAAGLD------PNTAT   75 (133)
T ss_dssp             -CCHHHHSEE----TCCCEETTSBHHHHHHHHHHHTCSEEEEEC-GGGBEEEEEEHHHHHHTTGGGTCC------TTTSB
T ss_pred             hcCHHHHhcC----CceEeCCCCCHHHHHHHHHHhCCCeEEEEC-CCCeEEEEEeHHHHHHHHHhcCCC------ccccC
Confidence            4578999987    888999999999999999999999999998 4799999999999984 5543321      12356


Q ss_pred             ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      +.+    +|.+. ++++.+++++.++++.|.+++++++||+|+ | +++|+||.+||++.+.
T Consensus        76 v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g-~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           76 AGE----LARDS-IYYVDANASIQEMLNVMEEHQVRRVPVISE-H-RLVGIVTEADIARHLP  130 (133)
T ss_dssp             HHH----HHTTC-CCCEETTCCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHTCC
T ss_pred             HHH----HhcCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHH
Confidence            777    77764 899999999999999999999999999998 7 9999999999998864

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.61  E-value=2.4e-15  Score=132.60  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=107.9

Q ss_pred             CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCC
Q 014353           54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSS  133 (426)
Q Consensus        54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~  133 (426)
                      ++++++  |.++++++++++++.+|+++|.++++.++||+|++        |+++|+|+..||+.++....         
T Consensus         9 ~~v~~i--m~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~--------g~~vGivt~~dl~~~~~~~~---------   69 (184)
T 1pvm_A            9 MRVEKI--MNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------GNDVGLLSERSIIKRFIPRN---------   69 (184)
T ss_dssp             CBGGGT--SBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT--------SCEEEEEEHHHHHHHTGGGC---------
T ss_pred             cCHHHh--cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHHHhhcc---------
Confidence            567777  88899999999999999999999999999999987        89999999999987644210         


Q ss_pred             CchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcC
Q 014353          134 PSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYK  213 (426)
Q Consensus       134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~  213 (426)
                                                              ......++.++|..    ++.++.+++++.+++..|.+++
T Consensus        70 ----------------------------------------~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~  105 (184)
T 1pvm_A           70 ----------------------------------------KKPDEVPIRLVMRK----PIPKVKSDYDVKDVAAYLSENG  105 (184)
T ss_dssp             ----------------------------------------CCGGGSBGGGTSBS----SCCEEETTCBHHHHHHHHHHHT
T ss_pred             ----------------------------------------cCcccCCHHHHhCC----CCcEECCCCCHHHHHHHHHHcC
Confidence                                                    01224578899986    8889999999999999999999


Q ss_pred             CcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          214 MKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       214 ~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      ++++||+| ++|+++|+||..|+++++..
T Consensus       106 ~~~lpVvd-~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A          106 LERCAVVD-DPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             CSEEEEEC-TTCCEEEEEEHHHHTTTSCH
T ss_pred             CcEEEEEc-CCCeEEEEEEHHHHHHHHHh
Confidence            99999999 46999999999999887653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.61  E-value=2.8e-15  Score=129.15  Aligned_cols=135  Identities=17%  Similarity=0.219  Sum_probs=107.6

Q ss_pred             hccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeec--CCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353           51 FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDV--DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS  128 (426)
Q Consensus        51 ~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~--~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~  128 (426)
                      ...++++++  |.++++++++++++.+|+++|.+++++++||+|+  +        ++++|+||..||+.++......  
T Consensus        10 ~~~~~v~di--m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~--------~~~~Givt~~dl~~~~~~~~~~--   77 (164)
T 2pfi_A           10 SHHVRVEHF--MNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES--------QILVGIVQRAQLVQALQAEPPS--   77 (164)
T ss_dssp             CCSCBHHHH--CBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT--------CBEEEEEEHHHHHHHHHC------
T ss_pred             ccCCCHHHH--cCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC--------CEEEEEEEHHHHHHHHHhhccc--
Confidence            345677777  8889999999999999999999999999999997  5        8999999999998775432100  


Q ss_pred             CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhcccccc-CC-cEEecCCCCHHHHH
Q 014353          129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRW-AP-FLALQKSNSFLTML  206 (426)
Q Consensus       129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~-~~-~~~v~~~~~l~~~l  206 (426)
                                                                  .......++.++|..... .+ +.++.+++++.+++
T Consensus        78 --------------------------------------------~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~  113 (164)
T 2pfi_A           78 --------------------------------------------RAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQ  113 (164)
T ss_dssp             -----------------------------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHH
T ss_pred             --------------------------------------------cCCcccchhhhhhcccccccCCceEECCCCcHHHHH
Confidence                                                        000123457777765110 01 67899999999999


Q ss_pred             HHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          207 LLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       207 ~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      ..|.+++++++||+|  +|+++|+||..|+++++.+.
T Consensus       114 ~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~~  148 (164)
T 2pfi_A          114 NLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISNL  148 (164)
T ss_dssp             HHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHhh
Confidence            999999999999999  58999999999999998653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.61  E-value=3.8e-15  Score=127.50  Aligned_cols=132  Identities=19%  Similarity=0.288  Sum_probs=108.1

Q ss_pred             hhccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCC
Q 014353           50 CFESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPP  127 (426)
Q Consensus        50 ~~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~  127 (426)
                      .+..++++++  |.+  +++++++++++.+|++.|.++++..+||+|++        |+++|+||..|++.++.....  
T Consensus         7 ~l~~~~v~~i--m~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------~~~~Givt~~dl~~~~~~~~~--   74 (157)
T 2emq_A            7 EFMQMTVKPF--LIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS--------YKLHGLISMTMMMDAILGLER--   74 (157)
T ss_dssp             ---CCBSTTT--CEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT--------CCEEEEEEHHHHHHHSBCSSS--
T ss_pred             hHhhCcHHhh--ccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC--------CCEEEEeeHHHHHHHHhcccc--
Confidence            4567888888  765  89999999999999999999999999999987        899999999999865332100  


Q ss_pred             CCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHH
Q 014353          128 SPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLL  207 (426)
Q Consensus       128 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~  207 (426)
                                                            +     ........++.++|..    ++.++.+++++.+++.
T Consensus        75 --------------------------------------~-----~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~a~~  107 (157)
T 2emq_A           75 --------------------------------------I-----EFERLETMKVEEVMNR----NIPRLRLDDSLMKAVG  107 (157)
T ss_dssp             --------------------------------------B-----CGGGGGTCBGGGTCBC----CCCEEETTSBHHHHHH
T ss_pred             --------------------------------------c-----chHHhcCCcHHHHhCC----CCceecCCCcHHHHHH
Confidence                                                  0     0112335678899987    8889999999999999


Q ss_pred             HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      .|.++++  +||+| ++|+++|+||..|+++++...
T Consensus       108 ~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A          108 LIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             HHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHHHT
T ss_pred             HHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHHHH
Confidence            9999887  99999 479999999999999998644

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.60  E-value=7.9e-15  Score=125.73  Aligned_cols=132  Identities=20%  Similarity=0.223  Sum_probs=108.8

Q ss_pred             ccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcE-eEEEeCCCCeEEEEEeHHHHHHHHHhc-----cCcc
Q 014353          174 EFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKS-IPVVDLGEGTIDNIITQSSVIHMLAEC-----AGLE  247 (426)
Q Consensus       174 ~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~-ipVvd~~~~~l~Giis~~Dl~~~l~~~-----~~~~  247 (426)
                      ..+...+++++|.+    ++.++.+++++.+++..|.++++++ +||+|. + +++|++|..|+++++...     ....
T Consensus        11 ~~~~~~~v~~im~~----~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~   84 (157)
T 1o50_A           11 HHMKVKDVCKLISL----KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEE   84 (157)
T ss_dssp             TTCBHHHHTTSSCC----CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred             hhhccccHhhcccC----CCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHH
Confidence            34566789999987    8999999999999999999999999 999994 5 999999999999876421     0000


Q ss_pred             h----hhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          248 W----FESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       248 ~----~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .    .......++.+    +|.+  ++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+.
T Consensus        85 ~~~~~~~~~~~~~v~~----im~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGiit~~dll~~l~  152 (157)
T 1o50_A           85 LIRSSMKRLIAKNASE----IMLD--PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALW  152 (157)
T ss_dssp             ----CCCCCSSCBHHH----HCBC--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHH----HcCC--CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence            0    01122456666    7875  89999999999999999999999999999877 9999999999998864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.60  E-value=1.8e-15  Score=132.53  Aligned_cols=152  Identities=20%  Similarity=0.269  Sum_probs=107.4

Q ss_pred             CCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCC
Q 014353           54 IPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRS  131 (426)
Q Consensus        54 ~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~  131 (426)
                      ++++++  |.+  +++++++++++.+|+++|.++++..+||+|++        ++++|+||..||+++..........  
T Consensus         4 ~~v~di--m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~--------~~~~Givt~~dl~~~~~~~~~~~~~--   71 (180)
T 3sl7_A            4 YTVGDF--MTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN--------WTLVGVVSDYDLLALDSISGRSQND--   71 (180)
T ss_dssp             CBHHHH--SEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHTCC------------
T ss_pred             eeHHHh--cCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC--------CeEEEEEEHHHHHhhhhhccccCCc--
Confidence            455565  665  89999999999999999999999999999988        8999999999997532211000000  


Q ss_pred             CCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhh
Q 014353          132 SSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSK  211 (426)
Q Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~  211 (426)
                                 ..        .+. . .......+...-.........++.++|..    ++.++.+++++.+++..|.+
T Consensus        72 -----------~~--------~~~-~-~~~~~~~~~~~~~~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~a~~~m~~  126 (180)
T 3sl7_A           72 -----------TN--------LFP-D-VDSTWKTFNELQKLISKTYGKVVGDLMTP----SPLVVRDSTNLEDAARLLLE  126 (180)
T ss_dssp             ------------------------------CCCSHHHHHHHHHTTTTCBHHHHSEE----SCCCEETTSBHHHHHHHHTT
T ss_pred             -----------cc--------ccc-c-ccchhhhhHHHHHHHhccccccHHHHhCC----CceEeCCCCcHHHHHHHHHH
Confidence                       00        000 0 00000000000000012345689999987    78899999999999999999


Q ss_pred             cCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          212 YKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       212 ~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      ++++++||+| ++|+++|+||..|+++++...
T Consensus       127 ~~~~~lpVvd-~~g~~vGiit~~dil~~~~~~  157 (180)
T 3sl7_A          127 TKFRRLPVVD-ADGKLIGILTRGNVVRAALQI  157 (180)
T ss_dssp             STTCEEEEEC-TTCBEEEEEEHHHHHHHHHHH
T ss_pred             cCCCEEEEEC-CCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999 489999999999999998643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.60  E-value=1.1e-14  Score=122.59  Aligned_cols=126  Identities=16%  Similarity=0.284  Sum_probs=103.3

Q ss_pred             ccchhh---hccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          178 NTKVRD---IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       178 ~~~v~~---i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      ..++++   +|..    ++.++.+++++.+++..|.+++++++||+| ++++++|+++..|+++.+.....     ....
T Consensus         7 ~~~v~~~~~~~~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~-----~~~~   76 (144)
T 2nyc_A            7 KIPIGDLNIITQD----NMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKGGIY-----NDLS   76 (144)
T ss_dssp             GSBGGGSSCCBCS----SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHHTC---------CC
T ss_pred             hcchhhcCCCCCC----CceEECCCCcHHHHHHHHHHcCcceeeEEc-CCCcEEEEEcHHHHHHHhccccc-----ccCC
Confidence            456777   5654    788999999999999999999999999999 47999999999999988754210     0113


Q ss_pred             ccccccccCCcccC-----CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          255 KKLSEIGLPIMSAN-----HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       255 ~~v~~~~~~im~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .++.+    +|...     +++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+.
T Consensus        77 ~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           77 LSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYIL  140 (144)
T ss_dssp             SBHHH----HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHH
T ss_pred             ccHHH----HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHH
Confidence            46666    56541     489999999999999999999999999999888 9999999999998864

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.59  E-value=2.4e-15  Score=142.17  Aligned_cols=123  Identities=20%  Similarity=0.333  Sum_probs=105.3

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc-----CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK-----KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY  326 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~  326 (426)
                      +...++++    +|+++ ++++.+++++.++++.|.++     +++++||+|+++ +++|+||.+|++....        
T Consensus       134 ~~~~~v~~----iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~-~lvGivt~~dll~~~~--------  199 (286)
T 2oux_A          134 YEDETAGA----IMTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQEN-HLVGVISLRDLIVNDD--------  199 (286)
T ss_dssp             SCTTBHHH----HCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTC-BEEEEEEHHHHTTSCT--------
T ss_pred             CChHHHHH----hCCCC-ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCC-eEEEEEEHHHHHcCCC--------
Confidence            34567777    88875 99999999999999999987     888999999887 9999999999976411        


Q ss_pred             ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          327 RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       327 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                              ..++.++|          .+++.+|++++++.+|++.|.+++++++||||++|+++|+||..||++.+..+.
T Consensus       200 --------~~~v~~im----------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          200 --------DTLIADIL----------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             --------TSBHHHHS----------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             --------CCcHHHHc----------CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence                    11244444          448999999999999999999999999999999999999999999999987654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.58  E-value=1.2e-14  Score=130.45  Aligned_cols=122  Identities=13%  Similarity=0.257  Sum_probs=108.0

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc---CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhh
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY---KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES  251 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~---~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~  251 (426)
                      .+...+++++|.+    .++++.++.++.+++..|.++   +++++||+| ++++++|+++..|++...           
T Consensus        50 ~~~~~~v~~iM~~----~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd-~~~~lvGivt~~dll~~~-----------  113 (205)
T 3kxr_A           50 QYSENEIGRYTDH----QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVD-EADKYLGTVRRYDIFKHE-----------  113 (205)
T ss_dssp             HSCTTCGGGGCBC----CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEEC-TTCBEEEEEEHHHHTTSC-----------
T ss_pred             CCCcchHHhhccC----ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEc-CCCeEEEEEEHHHHHhCC-----------
Confidence            4677899999997    899999999999999999987   889999999 489999999999986421           


Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                       ...++.+    +|+++ ++++.+++++.++++.|.+++++.+||||++| +++|+||..|++..+..
T Consensus       114 -~~~~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g-~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          114 -PHEPLIS----LLSED-SRALTANTTLLDAAEAIEHSREIELPVIDDAG-ELIGRVTLRAATALVRE  174 (205)
T ss_dssp             -TTSBGGG----GCCSS-CCCEETTSCHHHHHHHHHTSSCSEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred             -CcchHHH----HhcCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHH
Confidence             1356777    88765 89999999999999999999999999999988 99999999999998753

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.57  E-value=2.1e-14  Score=123.03  Aligned_cols=128  Identities=22%  Similarity=0.301  Sum_probs=107.1

Q ss_pred             cchhhhccccc--cCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353          179 TKVRDIAGSFR--WAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK  256 (426)
Q Consensus       179 ~~v~~i~~~~~--~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~  256 (426)
                      .+++++|.+..  ..++.++.+++++.+++..|.+++++++||++  +++++|++|..|+++.+......     ....+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~-----~~~~~   79 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERS-----SKATR   79 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCC-----SSSCB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCC-----ccccC
Confidence            46899998410  02568999999999999999999999999954  79999999999999987543211     12456


Q ss_pred             ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                      +.+    +|.++ ++++.+++++.+++++|.+++++++||+| +| +++|+||.+||++++...
T Consensus        80 v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           80 VEE----IMTAK-VRYVEPSQSTDECMALMTEHRMRHLPVLD-GG-KLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             HHH----HSBSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTT
T ss_pred             HHH----HcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEE-CC-EEEEEEEHHHHHHHHHHH
Confidence            777    78764 89999999999999999999999999999 57 999999999999998654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.57  E-value=2.5e-14  Score=125.77  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=107.7

Q ss_pred             ccccchhhhccccccCCcEEe--cCCCCHHHHHHHHhhcCCcEeEEE--eCCCCeEEEEEeHHHHHHHHHhccCcc--h-
Q 014353          176 YKNTKVRDIAGSFRWAPFLAL--QKSNSFLTMLLLLSKYKMKSIPVV--DLGEGTIDNIITQSSVIHMLAECAGLE--W-  248 (426)
Q Consensus       176 ~~~~~v~~i~~~~~~~~~~~v--~~~~~l~~~l~~l~~~~~~~ipVv--d~~~~~l~Giis~~Dl~~~l~~~~~~~--~-  248 (426)
                      ....+++++|.+....+++++  .+++++.+++..|.+++++++||+  | ++++++|+||..|+++.+.......  . 
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-CCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            456789999986211126788  999999999999999999999999  5 4799999999999999875431100  0 


Q ss_pred             ---------------hhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHH
Q 014353          249 ---------------FESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI  313 (426)
Q Consensus       249 ---------------~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl  313 (426)
                                     .......++.+    +|.+. ++++.+++++.++++.|.+++++++||+| +| +++|+||.+||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g-~~vGiit~~dl  159 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRN----ILDLS-PFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG-RLLGIITKKDV  159 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGG----GEESS-CCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHH
T ss_pred             ccceeecccCCcccccccccCccHHH----hhCcC-CeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CC-EEEEEEEHHHH
Confidence                           00112345666    78764 89999999999999999999999999999 67 99999999999


Q ss_pred             HHHhh
Q 014353          314 QFLLT  318 (426)
Q Consensus       314 ~~~~~  318 (426)
                      ++.+.
T Consensus       160 l~~l~  164 (185)
T 2j9l_A          160 LKHIA  164 (185)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.57  E-value=1.5e-14  Score=124.18  Aligned_cols=131  Identities=18%  Similarity=0.250  Sum_probs=107.5

Q ss_pred             ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccc
Q 014353          176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKK  255 (426)
Q Consensus       176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~  255 (426)
                      +...+++++|.+.  .++.++.+++++.+++..|.+++++++||+| ++++++|++|..|++..+...... ........
T Consensus        11 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~lvGivt~~dl~~~~~~~~~~-~~~~~~~~   86 (159)
T 1yav_A           11 LLEATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLERI-EFEKLDQI   86 (159)
T ss_dssp             CTTCBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTCBEEEEEEHHHHHHHHBCSSSB-CGGGTTTS
T ss_pred             HhHhhHHHHhCCc--cceEEECCCCcHHHHHHHHHhCCCcEEEEEC-CCCCEEEEeEHHHHHHHhhhhccc-chhhhccC
Confidence            4467899999731  1477899999999999999999999999999 478999999999999887542211 11123345


Q ss_pred             cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      ++.+    +|.+. ++++.+++++.++++.|.++++  +||+|++| +++|+||.+||++++.
T Consensus        87 ~v~~----~m~~~-~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g-~~vGiit~~dil~~~~  141 (159)
T 1yav_A           87 TVEE----VMLTD-IPRLHINDPIMKGFGMVINNGF--VCVENDEQ-VFEGIFTRRVVLKELN  141 (159)
T ss_dssp             BHHH----HSBCS-CCEEETTSBHHHHHHHTTTCSE--EEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred             CHHH----hcCCC-CceEcCCCCHHHHHHHHHhCCE--EEEEeCCC-eEEEEEEHHHHHHHHH
Confidence            6777    78764 8999999999999999999887  99999887 9999999999999864

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.53  E-value=7.7e-14  Score=128.62  Aligned_cols=135  Identities=19%  Similarity=0.203  Sum_probs=105.2

Q ss_pred             ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC-CCeEEEEEeHHHHHHHHHhcc---Cc--ch-
Q 014353          176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG-EGTIDNIITQSSVIHMLAECA---GL--EW-  248 (426)
Q Consensus       176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~-~~~l~Giis~~Dl~~~l~~~~---~~--~~-  248 (426)
                      ....+|+++|.+    +++++.+++++.++..+|.+++++++||+|.+ +++++|+|+..||+.++....   ..  .+ 
T Consensus        10 ~~~~~v~diMt~----~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~   85 (250)
T 2d4z_A           10 KYNIQVGDIMVR----DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA   85 (250)
T ss_dssp             CSSCBTTSSSBS----SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred             cCCCChHHhcCC----CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence            345689999998    89999999999999999999999999999843 368999999999998874321   00  00 


Q ss_pred             ----------------------hhhh------------------------------------------------------
Q 014353          249 ----------------------FESW------------------------------------------------------  252 (426)
Q Consensus       249 ----------------------~~~~------------------------------------------------------  252 (426)
                                            ...+                                                      
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
T 2d4z_A           86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS  165 (250)
T ss_dssp             CCBCCC--------------------------------------------------------------------------
T ss_pred             hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence                                  0000                                                      


Q ss_pred             ------------------ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 014353          253 ------------------GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ  314 (426)
Q Consensus       253 ------------------~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~  314 (426)
                                        ...++. +.-.+|++. ++++.+++++.++..+|...|++++||++. | +++|+||++||+
T Consensus       166 ~~~~~i~~~~~~~~~~~~l~~~Vd-l~~~~md~s-P~tv~~~tsL~~v~~LF~~lglr~l~V~~~-G-rLVGIVTrkDl~  241 (250)
T 2d4z_A          166 RFEEMLTLEEIYRWEQREKNVVVN-FETCRIDQS-PFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-G-KLVGVVALAEIQ  241 (250)
T ss_dssp             -CCSCCBHHHHHHHHHHHTTCBCC-TTSSCEECC-SCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHH
T ss_pred             ccccccChhhhhhHHHHhcCceec-cccccccCC-CeEECCCCcHHHHHHHHHHhCCeEEEEEEC-C-EEEEEEEHHHHH
Confidence                              000110 000157775 999999999999999999999999999985 6 999999999999


Q ss_pred             HHhh
Q 014353          315 FLLT  318 (426)
Q Consensus       315 ~~~~  318 (426)
                      +++.
T Consensus       242 kai~  245 (250)
T 2d4z_A          242 AAIE  245 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.50  E-value=7.7e-14  Score=140.69  Aligned_cols=121  Identities=26%  Similarity=0.367  Sum_probs=104.9

Q ss_pred             ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc-----CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccc
Q 014353          253 GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK-----KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYR  327 (426)
Q Consensus       253 ~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~  327 (426)
                      ...++++    +|+++ ++++++++++.++++.|.+.     +++++||+|+++ +++|+|+.+|++..-  .       
T Consensus       153 ~~~~v~~----iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~-~lvGiVt~~Dll~~~--~-------  217 (473)
T 2zy9_A          153 EEDEAGG----LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG-RLKGVLSLRDLIVAD--P-------  217 (473)
T ss_dssp             CTTBSTT----TCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTS-BEEEEEEHHHHHHSC--T-------
T ss_pred             CCCCHHH----hCCCC-ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCC-cEEEEEEHHHHhcCC--C-------
Confidence            3456666    89875 99999999999999999986     579999999887 999999999998641  1       


Q ss_pred             cccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       328 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                                       ..++.++|.+++.++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.++
T Consensus       218 -----------------~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          218 -----------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             -----------------TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             -----------------CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence                             0144556667999999999999999999999999999999999999999999999998754

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.50  E-value=6.9e-15  Score=153.61  Aligned_cols=146  Identities=16%  Similarity=0.161  Sum_probs=105.1

Q ss_pred             cccccccccCCccc-CCeeEeCCCCcHHHHHHHHH-hcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc-----
Q 014353          254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMR-RKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY-----  326 (426)
Q Consensus       254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~-~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~-----  326 (426)
                      ..++++    +|++ ++++++++++++.++.+.|. +++++++||+|+++ +++|+|+++|+.+.+.+.......     
T Consensus       452 ~~~V~d----iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~-~lvGiVt~~DL~~~l~~~~~~~~~~~~~~  526 (632)
T 3org_A          452 EMTARE----IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANG-YLLGAISRKEIVDRLQHVLEDVPEPIAGH  526 (632)
T ss_dssp             TSBHHH----HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTC-BBCCEESHHHHTTTTTTC-----------
T ss_pred             cCcHHH----HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCC-eEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence            345666    8883 34999999999999999999 79999999999887 999999999999886543110000     


Q ss_pred             ---ccccHHHHHHHHHHHhhh-------------------cCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEc
Q 014353          327 ---RSITAKNFLTAVRKYMEE-------------------HHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVD  384 (426)
Q Consensus       327 ---~~~~~~~~~~~v~~~~~~-------------------~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd  384 (426)
                         ......++...++.....                   ...+.++|.+++.++++++++.+++++|.+++++++||+ 
T Consensus       527 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-  605 (632)
T 3org_A          527 RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-  605 (632)
T ss_dssp             --------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-
T ss_pred             cceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-
Confidence               000001111111111110                   013678999999999999999999999999999999999 


Q ss_pred             CCCcEEEEEeHHHHHHHHHhC
Q 014353          385 FNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       385 ~~~~liGvIT~~Dll~~l~~~  405 (426)
                      ++|+++|+||++||++.+.++
T Consensus       606 e~G~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          606 ERGKLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             ETTEEEEEEEGGGTEECCCC-
T ss_pred             ECCEEEEEEehhhHHHHHhhh
Confidence            689999999999998876554

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.49  E-value=5.7e-14  Score=143.89  Aligned_cols=127  Identities=13%  Similarity=0.224  Sum_probs=105.1

Q ss_pred             ccccccccccCCcccCCeeEeCCC-CcHHHHHHHHHhcCCCeeEEEe-CCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353          253 GKKKLSEIGLPIMSANHIVKVYED-EPVLQAFKLMRRKKIGGIPVVE-KGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT  330 (426)
Q Consensus       253 ~~~~v~~~~~~im~~~~~~~v~~~-~~v~~a~~~m~~~~~~~lpVvd-~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~  330 (426)
                      ...++++    +|+++ ++++.++ +++.+++++|.+++++++||+| +++ +++|+||.+||++.+..+...       
T Consensus       382 ~~~~V~d----iM~~~-~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g-~lvGiVt~~Dll~~l~~~~~~-------  448 (527)
T 3pc3_A          382 WSLAIAE----LELPA-PPVILKSDATVGEAIALMKKHRVDQLPVVDQDDG-SVLGVVGQETLITQIVSMNRQ-------  448 (527)
T ss_dssp             TTSBGGG----GCCCC-CSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTC-CEEEEEEHHHHHHHHHHHCCC-------
T ss_pred             cCCcHHH----hCcCC-CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCC-EEEEEEEHHHHHHHHHhccCc-------
Confidence            3456777    88875 9999999 9999999999999999999999 666 999999999999886432110       


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC----CcEEEEEeHHHHHHHHHhCC
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN----GNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~----~~liGvIT~~Dll~~l~~~~  406 (426)
                                   ...++.++|.+++.++.+++++.+++++|.++++  +||||++    |+++||||++||++++..+.
T Consensus       449 -------------~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          449 -------------QSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             -------------TTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             -------------CCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence                         0114455666699999999999999999977765  7999984    89999999999999998765


Q ss_pred             C
Q 014353          407 P  407 (426)
Q Consensus       407 ~  407 (426)
                      .
T Consensus       514 ~  514 (527)
T 3pc3_A          514 Q  514 (527)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.49  E-value=1.1e-13  Score=130.78  Aligned_cols=121  Identities=15%  Similarity=0.282  Sum_probs=107.3

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc-----CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY-----KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF  249 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~-----~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~  249 (426)
                      .+...+++++|.+    +++++.+++++.+++..|.++     +++++||+|. +++++|+||..|++...         
T Consensus       133 ~~~~~~v~~iM~~----~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~~---------  198 (286)
T 2oux_A          133 HYEDETAGAIMTT----EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVND---------  198 (286)
T ss_dssp             TSCTTBHHHHCBS----CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTSC---------
T ss_pred             cCChHHHHHhCCC----CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcCC---------
Confidence            4567789999987    899999999999999999987     8889999994 79999999999987641         


Q ss_pred             hhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       250 ~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                         ...++.+    +|.++ ++++.+++++.++++.|.+++++++||||++| +++|+||..|++..+.
T Consensus       199 ---~~~~v~~----im~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          199 ---DDTLIAD----ILNER-VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-HLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ---TTSBHHH----HSBSC-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred             ---CCCcHHH----HcCCC-CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHH
Confidence               1356777    78765 89999999999999999999999999999888 9999999999999864

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.47  E-value=1.2e-13  Score=141.39  Aligned_cols=127  Identities=16%  Similarity=0.231  Sum_probs=109.6

Q ss_pred             hccCCccCCCCCCCceEEEeCC-CCHHHHHHHHHHCCcccceeee-cCCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353           51 FESIPVEAFPPPPSQVIEIKSD-TSLAEAVEILAQHRILSAPVVD-VDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS  128 (426)
Q Consensus        51 ~~~~~~~~~~~~~~~vi~v~~~-~sl~~A~~~l~~~~i~slPVvd-~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~  128 (426)
                      |...+++++  |++++++++++ +|+.+|+++|.++++.++||+| ++        ++++||||..||++++.....   
T Consensus       381 l~~~~V~di--M~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~--------g~lvGiVt~~Dll~~l~~~~~---  447 (527)
T 3pc3_A          381 WWSLAIAEL--ELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD--------GSVLGVVGQETLITQIVSMNR---  447 (527)
T ss_dssp             TTTSBGGGG--CCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT--------CCEEEEEEHHHHHHHHHHHCC---
T ss_pred             ccCCcHHHh--CcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC--------CEEEEEEEHHHHHHHHHhccC---
Confidence            556888888  89999999999 9999999999999999999999 56        899999999999988765321   


Q ss_pred             CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353          129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL  208 (426)
Q Consensus       129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~  208 (426)
                                                                     ....++.++|.+    +++++.+++++.+++.+
T Consensus       448 -----------------------------------------------~~~~~V~~im~~----~~~~v~~~~~l~~a~~~  476 (527)
T 3pc3_A          448 -----------------------------------------------QQSDPAIKALNK----RVIRLNESEILGKLARV  476 (527)
T ss_dssp             -----------------------------------------------CTTSBGGGGEET----TCCEEETTSBHHHHHHH
T ss_pred             -----------------------------------------------cCCCcHHHHhcC----CCeEECCCCcHHHHHHH
Confidence                                                           124578999987    89999999999999999


Q ss_pred             HhhcCCcEeEEEeCC---CCeEEEEEeHHHHHHHHHhc
Q 014353          209 LSKYKMKSIPVVDLG---EGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       209 l~~~~~~~ipVvd~~---~~~l~Giis~~Dl~~~l~~~  243 (426)
                      |.++++  +||+|.+   .++++||||..|+++++.+.
T Consensus       477 m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          477 LEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             HTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             HhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            977664  6999842   38999999999999999755

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.47  E-value=3.3e-13  Score=126.90  Aligned_cols=122  Identities=22%  Similarity=0.371  Sum_probs=106.3

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc-----CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY-----KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF  249 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~-----~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~  249 (426)
                      .+...+++++|.+    +++++.++.++.+++..|.++     ++.++||+|. +++++|+||..|++...         
T Consensus       131 ~~~~~~v~~iM~~----~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~~---------  196 (278)
T 2yvy_A          131 RYEEDEAGGLMTP----EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVAD---------  196 (278)
T ss_dssp             HSCTTBGGGTCBS----CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHSC---------
T ss_pred             CCCcchHHhhcCC----CceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcCC---------
Confidence            3556789999987    889999999999999999987     7899999994 79999999999987631         


Q ss_pred             hhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       250 ~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                         ...++.+    +|.++ ++++.+++++.++++.|.+++++.+||||++| +++|+||..|++..+..
T Consensus       197 ---~~~~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 ---PRTRVAE----IMNPK-VVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ---TTCBSTT----TSBSS-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHC--
T ss_pred             ---CCCcHHH----HhCCC-CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC-eEEEEEEHHHHHHHHHH
Confidence               1356777    88765 99999999999999999999999999999888 99999999999998653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.39  E-value=8.3e-13  Score=133.96  Aligned_cols=114  Identities=30%  Similarity=0.436  Sum_probs=98.2

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC--CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK--GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~--~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                      .|..+ ++++.+++++.+++++|.+++++++||+|+  ++ +++|+|+.+|+....  .      ..       .++.++
T Consensus       118 ~m~~d-~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~-~lvGiVt~rDl~~~~--~------~~-------~~V~~v  180 (511)
T 3usb_A          118 GVISD-PFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDER-KLVGIITNRDMRFIQ--D------YS-------IKISDV  180 (511)
T ss_dssp             CSSSS-CCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTC-BEEEEEEHHHHTTCC--C------SS-------SBHHHH
T ss_pred             ccccC-CEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCC-EEEEEEEehHhhhhc--c------CC-------CcHHHh
Confidence            56664 899999999999999999999999999998  77 999999999996421  0      01       124444


Q ss_pred             hhhcCCCCCCCcC-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          342 MEEHHHEDSPLLS-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       342 ~~~~~~~~~~~~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                      |          .+ +++++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..
T Consensus       181 M----------~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          181 M----------TKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             C----------CCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             c----------ccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            4          33 88999999999999999999999999999999999999999999999865

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.38  E-value=2e-12  Score=130.28  Aligned_cols=121  Identities=21%  Similarity=0.381  Sum_probs=106.2

Q ss_pred             hccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHC-----CcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353           51 FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQH-----RILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE  125 (426)
Q Consensus        51 ~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~-----~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~  125 (426)
                      |...++.++  |+++++++++++++.+|++.|.++     ++..+||+|++        ++++|+|+..|++..     .
T Consensus       152 ~~~~~v~~i--M~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~--------~~lvGiVt~~Dll~~-----~  216 (473)
T 2zy9_A          152 YEEDEAGGL--MTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK--------GRLKGVLSLRDLIVA-----D  216 (473)
T ss_dssp             SCTTBSTTT--CBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT--------SBEEEEEEHHHHHHS-----C
T ss_pred             CCCCCHHHh--CCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC--------CcEEEEEEHHHHhcC-----C
Confidence            345666676  999999999999999999999996     68999999987        899999999999731     0


Q ss_pred             CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353          126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM  205 (426)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~  205 (426)
                                                                         ...+++++|.+    +++++.+++++.++
T Consensus       217 ---------------------------------------------------~~~~v~dim~~----~~~~v~~~~~l~ea  241 (473)
T 2zy9_A          217 ---------------------------------------------------PRTRVAEIMNP----KVVYVRTDTDQEEV  241 (473)
T ss_dssp             ---------------------------------------------------TTSBGGGTSBS----SCCCEESSSBHHHH
T ss_pred             ---------------------------------------------------CCCcHHHHhCC----CCeEEeCCCcHHHH
Confidence                                                               13468899976    88899999999999


Q ss_pred             HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      ++.|.+++.+.+||+| ++|+++|+||..|++..+..
T Consensus       242 ~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          242 ARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             HHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHHH
Confidence            9999999999999999 48999999999999998854

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.38  E-value=4.5e-12  Score=128.74  Aligned_cols=114  Identities=27%  Similarity=0.412  Sum_probs=101.8

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEe--CCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVE--KGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd--~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                      +|.++ ++++.+++++.++++.|.+++++++||+|  +++ +++|+||.+|++....                       
T Consensus        95 im~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~-~lvGivt~~Dl~~~~~-----------------------  149 (491)
T 1zfj_A           95 GVIID-PFFLTPEHKVSEAEELMQRYRISGVPIVETLANR-KLVGIITNRDMRFISD-----------------------  149 (491)
T ss_dssp             TTSSS-CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTC-BEEEEEEHHHHHHCSC-----------------------
T ss_pred             cCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCC-EEEEEEEHHHHhhhcc-----------------------
Confidence            78875 99999999999999999999999999999  666 9999999999986411                       


Q ss_pred             hhhcCCCCCCCcC-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          342 MEEHHHEDSPLLS-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       342 ~~~~~~~~~~~~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                        ...++.++|.+ +++++++++++.++++.|.+++++++||||++|+++|+||.+||++.+..
T Consensus       150 --~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          150 --YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             --SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             --CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence              01256677877 89999999999999999999999999999999999999999999999874

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.36  E-value=4.9e-12  Score=128.31  Aligned_cols=154  Identities=19%  Similarity=0.270  Sum_probs=117.8

Q ss_pred             CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCC
Q 014353          192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANH  269 (426)
Q Consensus       192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~  269 (426)
                      +++++.+++++.+++.+|.+++++++||+| +  +++++|+||..|+..    ..       ....++.+    +|++++
T Consensus       122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd-~g~~~~lvGiVt~rDl~~----~~-------~~~~~V~~----vM~~~~  185 (511)
T 3usb_A          122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVN-NLDERKLVGIITNRDMRF----IQ-------DYSIKISD----VMTKEQ  185 (511)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHCCSEEEEES-CTTTCBEEEEEEHHHHTT----CC-------CSSSBHHH----HCCCCC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEe-cCCCCEEEEEEEehHhhh----hc-------cCCCcHHH----hcccCC
Confidence            677899999999999999999999999999 4  689999999999853    11       11457777    788645


Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED  349 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (426)
                      ++++++++++.+++++|.+++++.+||||++| +++|+||.+|+++.+..+....                         
T Consensus       186 ~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g-~l~GiIT~~Dil~~~~~p~a~~-------------------------  239 (511)
T 3usb_A          186 LITAPVGTTLSEAEKILQKYKIEKLPLVDNNG-VLQGLITIKDIEKVIEFPNSAK-------------------------  239 (511)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHCTTCCB-------------------------
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC-CEeeeccHHHHHHhhhcccchh-------------------------
Confidence            99999999999999999999999999999998 9999999999999976532111                         


Q ss_pred             CCCcCC--ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 014353          350 SPLLSG--MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG  387 (426)
Q Consensus       350 ~~~~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~  387 (426)
                      +.+.+.  ...+.......+.++.+.+.+++.++|-..++
T Consensus       240 D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          240 DKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             CTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             hhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            111111  12333344445566677777887776654443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.33  E-value=5.5e-13  Score=134.80  Aligned_cols=113  Identities=21%  Similarity=0.309  Sum_probs=84.1

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|..+ ++++.+++++.+++++|.+++++++||+|+++ +++|+||.+|+.... ..                       
T Consensus        94 ~m~~d-~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~-~lvGiVt~rDL~~~~-~~-----------------------  147 (496)
T 4fxs_A           94 GVVTH-PVTVRPEQTIADVMELTHYHGFAGFPVVTENN-ELVGIITGRDVRFVT-DL-----------------------  147 (496)
T ss_dssp             --CBC-CCCBCSSSBHHHHHHHHTSSCCCEEEEECSSS-BEEEEEEHHHHTTCC-CT-----------------------
T ss_pred             ccccC-ceEECCCCCHHHHHHHHHHcCCcEEEEEccCC-EEEEEEEHHHHhhcc-cC-----------------------
Confidence            67764 99999999999999999999999999999877 999999999996321 00                       


Q ss_pred             hcCCCCCCCc-C-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          344 EHHHEDSPLL-S-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       344 ~~~~~~~~~~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                       ..++.++|. . +++++++++++.++++.|.+++++.+||||++|+++|+||++||++...
T Consensus       148 -~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          148 -TKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             -TSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             -CCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence             013344555 2 5899999999999999999999999999999999999999999999864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.31  E-value=9.2e-13  Score=137.55  Aligned_cols=130  Identities=18%  Similarity=0.095  Sum_probs=103.5

Q ss_pred             cccchhhhcc--ccccCCcEEecCCCCHHHHHHHHh-hcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcch-----
Q 014353          177 KNTKVRDIAG--SFRWAPFLALQKSNSFLTMLLLLS-KYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEW-----  248 (426)
Q Consensus       177 ~~~~v~~i~~--~~~~~~~~~v~~~~~l~~~l~~l~-~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~-----  248 (426)
                      ...+++++|.  +    ++.++.+++++.|+.+.|. +++++++||+|+ +++++|+|+.+|+.+.+........     
T Consensus       451 ~~~~V~diM~p~~----~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~  525 (632)
T 3org_A          451 PEMTAREIMHPIE----GEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAG  525 (632)
T ss_dssp             TTSBHHHHCBCTT----TSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC----------
T ss_pred             ccCcHHHHhhcCC----CceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhccccccc
Confidence            5678999998  5    7889999999999999999 799999999994 8999999999999887643210000     


Q ss_pred             ---------------hhhhcc---------------------ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCC
Q 014353          249 ---------------FESWGK---------------------KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIG  292 (426)
Q Consensus       249 ---------------~~~~~~---------------------~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~  292 (426)
                                     ......                     .++.+    +|+++ ++++++++++.+++++|.+++++
T Consensus       526 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~----iMt~~-pitV~~~~~l~ea~~~M~~~~i~  600 (632)
T 3org_A          526 HRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV----PCDVS-PIVVTSYSLVRQLHFLFVMLMPS  600 (632)
T ss_dssp             ---------------------------------------------CC----SCCCC-CCEEETTCBHHHHHHHHHHTCCS
T ss_pred             ccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch----hhcCC-CceecCCCcHHHHHHHHHhcCCC
Confidence                           000000                     01333    78876 89999999999999999999999


Q ss_pred             eeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          293 GIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       293 ~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .+||+ ++| +++|+||++|+++.+.
T Consensus       601 ~lpVv-e~G-~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          601 MIYVT-ERG-KLVGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEEE-ETT-EEEEEEEGGGTEECCC
T ss_pred             EEEEE-ECC-EEEEEEehhhHHHHHh
Confidence            99999 567 9999999999987754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.30  E-value=2.5e-13  Score=137.93  Aligned_cols=116  Identities=17%  Similarity=0.236  Sum_probs=0.9

Q ss_pred             cccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          265 MSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       265 m~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                      |.++ ++++.+++++.+++++|.+++++++||+|++   + +++|+||.+|+++.  ..            +...+++++
T Consensus       103 M~~~-~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g-~lvGiVt~~Dl~~~--~~------------~~~~~V~di  166 (503)
T 1me8_A          103 FVVS-DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG-VLLGLVTQRDYPID--LT------------QTETKVSDM  166 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccC-CeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC-eEEEEEEHHHHHhh--hc------------cccCcHHHH
Confidence            7774 9999999999999999999999999999986   6 99999999999864  00            122334444


Q ss_pred             hhhcCCCCCCCcCC--ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          342 MEEHHHEDSPLLSG--MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       342 ~~~~~~~~~~~~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                                |.++  ++++++++++.+++++|.+++++.+||||++|+++|+||.+||++.+....
T Consensus       167 ----------M~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~  223 (503)
T 1me8_A          167 ----------MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHN  223 (503)
T ss_dssp             -----------------------------------------------------------------CC
T ss_pred             ----------hCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhccc
Confidence                      4445  999999999999999999999999999999999999999999999987543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.26  E-value=5.1e-13  Score=132.19  Aligned_cols=107  Identities=23%  Similarity=0.345  Sum_probs=0.0

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH  346 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  346 (426)
                      ++++.++.++.+++++|.+++++.+||+|+   ++ +++||||.+|+...                +...+++++     
T Consensus       148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~-kLvGIvT~RD~rf~----------------d~~~~V~ev-----  205 (556)
T 4af0_A          148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS-KLLGIVTGRDVQFQ----------------DAETPIKSV-----  205 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC-EEEEEEeccccccc----------------ccceEhhhh-----
Confidence            899999999999999999999999999987   45 99999999998542                122345544     


Q ss_pred             CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                           |++++++++...++++|.++|.++++..+||||++|+++|+||.+|+++.-.
T Consensus       206 -----MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          206 -----MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ---------------------------------------------------------
T ss_pred             -----cccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence                 4458999999999999999999999999999999999999999999998764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.25  E-value=5.3e-13  Score=134.84  Aligned_cols=112  Identities=27%  Similarity=0.382  Sum_probs=0.0

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|..+ ++++.+++++.+++++|.+++++++||+| ++ +++|+||.+|+....               +...++.+   
T Consensus        93 ~m~~~-~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g-~lvGIVt~rDl~~~~---------------~~~~~V~~---  151 (490)
T 4avf_A           93 AIVRD-PVTVTPSTKIIELLQMAREYGFSGFPVVE-QG-ELVGIVTGRDLRVKP---------------NAGDTVAA---  151 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccC-ceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CC-EEEEEEEhHHhhhcc---------------ccCCcHHH---
Confidence            67765 89999999999999999999999999999 66 999999999995331               12233444   


Q ss_pred             hcCCCCCCCc-C-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          344 EHHHEDSPLL-S-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       344 ~~~~~~~~~~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                             +|. + +++++++++++.+++++|.+++++.+||||++|+++|+||++||++...
T Consensus       152 -------vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          152 -------IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------------------------------
T ss_pred             -------HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                   444 2 6899999999999999999999999999999999999999999999864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.25  E-value=6e-13  Score=135.25  Aligned_cols=115  Identities=27%  Similarity=0.468  Sum_probs=6.5

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|.++ ++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+|+.+..               +...       
T Consensus       100 iM~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~lvGivt~~Dl~~~~---------------~~~~-------  155 (494)
T 1vrd_A          100 GIIYD-PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG-RLVGLLTNRDVRFEK---------------NLSK-------  155 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccC-CeEECCCCCHHHHHHHHHHcCceEEEEEcCCC-EEEEEEEHHHHHhhc---------------CCCC-------
Confidence            78764 99999999999999999999999999999887 999999999998631               1112       


Q ss_pred             hcCCCCCCCcC--CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          344 EHHHEDSPLLS--GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       344 ~~~~~~~~~~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                         ++.++|.+  ++.++++++++.+++++|.+++++++||||++|+++|+||.+||++.+...
T Consensus       156 ---~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          156 ---KIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             --------------------------------------------------------CHHHHTCT
T ss_pred             ---cHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence               33345555  889999999999999999999999999999999999999999999998754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.23  E-value=1.9e-12  Score=131.40  Aligned_cols=115  Identities=16%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             ccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC---CeEEEEEeHHHHHHHHHhccCcchhhhhccccccccc
Q 014353          185 AGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE---GTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIG  261 (426)
Q Consensus       185 ~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~---~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~  261 (426)
                      |.+    +++++.+++++.+++..|.+++++++||+|. +   ++++|+||..|+... . .        ....++.+  
T Consensus       103 M~~----~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~-~~~~g~lvGiVt~~Dl~~~-~-~--------~~~~~V~d--  165 (503)
T 1me8_A          103 FVV----SDSNVKPDQTFADVLAISQRTTHNTVAVTDD-GTPHGVLLGLVTQRDYPID-L-T--------QTETKVSD--  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc----CCeEECCCCcHHHHHHHHHHcCceEEEEEEC-CCcCCeEEEEEEHHHHHhh-h-c--------cccCcHHH--
Confidence            665    7889999999999999999999999999994 5   899999999998764 1 0        11356777  


Q ss_pred             cCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          262 LPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       262 ~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                        +|++ ++++++.+++++.+++++|.+++++.+||+|++| +++|+||.+||++.+..
T Consensus       166 --iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          166 --MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ-HLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             -----------------------------------------------------------
T ss_pred             --HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEecHHHHhhhc
Confidence              7875 2389999999999999999999999999999988 99999999999988653

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.16  E-value=3.1e-11  Score=122.03  Aligned_cols=118  Identities=16%  Similarity=0.163  Sum_probs=88.4

Q ss_pred             hhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccccc
Q 014353          181 VRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEI  260 (426)
Q Consensus       181 v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~  260 (426)
                      +.++|..    +++++.+++++.+++.+|.+++++++||+|. +++++|+||..|+...   .        -...++.+ 
T Consensus        91 ~~~~m~~----d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~~---~--------~~~~~v~d-  153 (496)
T 4fxs_A           91 FEAGVVT----HPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRFV---T--------DLTKSVAA-  153 (496)
T ss_dssp             CCC--CB----CCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTTC---C--------CTTSBGGG-
T ss_pred             ccccccc----CceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhhc---c--------cCCCcHHH-
Confidence            4556665    7889999999999999999999999999994 7999999999998511   0        12456777 


Q ss_pred             ccCCcc-cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          261 GLPIMS-ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       261 ~~~im~-~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                         +|+ .++++++.+++++.+++++|.+++++.+||||++| +++|+||.+|+++....
T Consensus       154 ---iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G-~l~GiIT~~DIl~~~~~  209 (496)
T 4fxs_A          154 ---VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF-QLKGMITAKDFHKAESK  209 (496)
T ss_dssp             ---TSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTS-BCCEEECCC-----CCC
T ss_pred             ---HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEeehHhHHHHhhcc
Confidence               888 33489999999999999999999999999999998 99999999999988543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.12  E-value=2.5e-10  Score=115.94  Aligned_cols=119  Identities=18%  Similarity=0.328  Sum_probs=103.2

Q ss_pred             hhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC-CCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          181 VRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL-GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       181 v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~-~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      +.++|..    ++.++.+++++.+++..|.+++++++||+|. ++++++|+||..|++...    .       ...++.+
T Consensus        92 ~~~im~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~----~-------~~~~v~~  156 (491)
T 1zfj_A           92 SENGVII----DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS----D-------YNAPISE  156 (491)
T ss_dssp             HTTTTSS----SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS----C-------SSSBTTT
T ss_pred             HHhcCcC----CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc----c-------CCCcHHH
Confidence            4678876    7888999999999999999999999999982 378999999999987531    0       1456777


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                          +|++++++++.+++++.++++.|.+++++.+||||+++ +++|+||..||++.+..
T Consensus       157 ----im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g-~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          157 ----HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ----SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred             ----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHHHHHHhc
Confidence                88862489999999999999999999999999999988 99999999999999874

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.11  E-value=1e-10  Score=85.45  Aligned_cols=48  Identities=21%  Similarity=0.332  Sum_probs=44.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHH
Q 014353           65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWIL  121 (426)
Q Consensus        65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~  121 (426)
                      ++++++|++|+.+|+++|.++++.++||+|+         ++++||||.+||++.+.
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~---------~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG---------DEILGVVTERDILDKVV   48 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEET---------TEEEEEEEHHHHHHHTT
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC---------CEEEEEEEHHHHHHHHH
Confidence            4789999999999999999999999999985         79999999999987644

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.09  E-value=3.9e-11  Score=121.16  Aligned_cols=118  Identities=19%  Similarity=0.273  Sum_probs=2.5

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      ++.++|..    +++++.+++++.+++.+|.+++++++||+|  +++++|+||..|+....           ....++.+
T Consensus        89 ~~~~~m~~----~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~~-----------~~~~~V~~  151 (490)
T 4avf_A           89 KHETAIVR----DPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVKP-----------NAGDTVAA  151 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCccc----CceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhcc-----------ccCCcHHH
Confidence            35566765    778999999999999999999999999999  68999999999984221           11356777


Q ss_pred             cccCCcc-cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          260 IGLPIMS-ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       260 ~~~~im~-~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                          +|+ .++++++.+++++.+++++|.+++++.+||||++| +++|+||.+|+++....
T Consensus       152 ----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          152 ----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENF-YLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             ------------------------------------------------------------C
T ss_pred             ----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEehHHhhhhccC
Confidence                888 33499999999999999999999999999999988 99999999999998644

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.09  E-value=9.9e-12  Score=123.06  Aligned_cols=113  Identities=16%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      +-.+++++.|+.||.||+++|.++++..+||+|..+..     ++++||||.+|+-.   .                   
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~-----~kLvGIvT~RD~rf---~-------------------  196 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPD-----SKLLGIVTGRDVQF---Q-------------------  196 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcC-----CEEEEEEecccccc---c-------------------
Confidence            45678999999999999999999999999999974211     89999999999831   1                   


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD  221 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd  221 (426)
                                                        ....++.++|.+    +++++.+..++.++..+|.++++..+||+|
T Consensus       197 ----------------------------------d~~~~V~evMT~----~lvt~~~~~~leeA~~iL~~~kieklpVVd  238 (556)
T 4af0_A          197 ----------------------------------DAETPIKSVMTT----EVVTGSSPITLEKANSLLRETKKGKLPIVD  238 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------ccceEhhhhccc----ceEEecCCCCHHHHHHHHHHccccceeEEc
Confidence                                              113478899997    899999999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHHHHHH
Q 014353          222 LGEGTIDNIITQSSVIHML  240 (426)
Q Consensus       222 ~~~~~l~Giis~~Dl~~~l  240 (426)
                       ++++|+|+||.+|+.+.-
T Consensus       239 -~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          239 -SNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------
T ss_pred             -cCCcEEEEEEechhhhhh
Confidence             589999999999987765

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.09  E-value=5.3e-11  Score=120.88  Aligned_cols=120  Identities=23%  Similarity=0.389  Sum_probs=7.0

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      .+.++|.+    ++.++.+++++.+++..|.+++++.+||+| ++++++|+||..|+...-.           ...++.+
T Consensus        96 ~~~~iM~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-~~~~lvGivt~~Dl~~~~~-----------~~~~v~~  159 (494)
T 1vrd_A           96 KTENGIIY----DPITVTPDMTVKEAIDLMAEYKIGGLPVVD-EEGRLVGLLTNRDVRFEKN-----------LSKKIKD  159 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc----CCeEECCCCCHHHHHHHHHHcCceEEEEEc-CCCEEEEEEEHHHHHhhcC-----------CCCcHHH
Confidence            35667776    788999999999999999999999999999 4789999999999875210           1356777


Q ss_pred             cccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          260 IGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       260 ~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                          +|++ ++++++.+++++.+++++|.+++++.+||||+++ +++|+||..|+++.+...
T Consensus       160 ----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          160 ----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN-KLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             ------------------------------------------------------CHHHHTCT
T ss_pred             ----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHhhhccc
Confidence                8886 2399999999999999999999999999999988 999999999999997644

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.08  E-value=2.6e-12  Score=131.06  Aligned_cols=115  Identities=24%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRK  340 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~  340 (426)
                      +|.++ ++++.+++++.+++++|.+++++.+||+|+   ++ +++|+||.+|+.....             .....    
T Consensus       113 im~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~-~lvGiVt~~Dl~~~~~-------------~~~~~----  173 (514)
T 1jcn_A          113 GFITD-PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS-KLVGIVTSRDIDFLAE-------------KDHTT----  173 (514)
T ss_dssp             TSCSS-CCCCCC-----------------CEESCC---------CCEECTTTTC--------------------------
T ss_pred             ccccC-CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC-EEEEEEEHHHHHhhhh-------------ccCCC----
Confidence            77765 889999999999999999999999999998   46 9999999999865410             01112    


Q ss_pred             HhhhcCCCCCCCcC--CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          341 YMEEHHHEDSPLLS--GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       341 ~~~~~~~~~~~~~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                            ++.++|.+  ++.++++++++.++++.|.+++++++||||++|+++|+||++||++.+.
T Consensus       174 ------~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          174 ------LLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             -------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             ------CHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence                  34455565  8999999999999999999999999999999999999999999998764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.06  E-value=1.6e-11  Score=124.26  Aligned_cols=110  Identities=30%  Similarity=0.489  Sum_probs=0.5

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      .|..+ ++++.+++++.++++.|.+++++++||+|+ + +++|+|+.+|++.   ..              ..++.    
T Consensus        98 ~m~~~-~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~-~lvGivt~~Dl~~---~~--------------~~~v~----  153 (486)
T 2cu0_A           98 LIVED-VITIAPDETVDFALFLMEKHGIDGLPVVED-E-KVVGIITKKDIAA---RE--------------GKLVK----  153 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccC-ceEECCCCCHHHHHHHHHHcCCcEEEEEEC-C-EEEEEEEHHHhcc---CC--------------CCCHH----
Confidence            56654 899999999999999999999999999998 6 9999999999975   11              12333    


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                            ++|.+++.++++++++.++++.|.+++++.+||||++|+++|+||.+||++.+.
T Consensus       154 ------~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          154 ------ELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -----------------------------------------------------------C
T ss_pred             ------HHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                  344448899999999999999999999999999999999999999999999864

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.95  E-value=1.8e-10  Score=116.59  Aligned_cols=163  Identities=22%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             hhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccc
Q 014353          182 RDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIG  261 (426)
Q Consensus       182 ~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~  261 (426)
                      .++|..    ++.++.+++++.+++..|.+++++++||+| + ++++|+++..|++.   .          ...++.+  
T Consensus        96 ~~~m~~----~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd-~-~~lvGivt~~Dl~~---~----------~~~~v~~--  154 (486)
T 2cu0_A           96 ERLIVE----DVITIAPDETVDFALFLMEKHGIDGLPVVE-D-EKVVGIITKKDIAA---R----------EGKLVKE--  154 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhcccc----CceEECCCCCHHHHHHHHHHcCCcEEEEEE-C-CEEEEEEEHHHhcc---C----------CCCCHHH--
Confidence            345654    778899999999999999999999999999 3 89999999999875   1          1356777  


Q ss_pred             cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       262 ~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                        +|+++ ++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++..........                
T Consensus       155 --im~~~-~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g-~lvGiiT~~Dil~~~~~~~~~~~----------------  214 (486)
T 2cu0_A          155 --LMTKE-VITVPESIEVEEALKIMIENRIDRLPVVDERG-KLVGLITMSDLVARKKYKNAVRD----------------  214 (486)
T ss_dssp             --------------------------------------------------------CCTTCCBC----------------
T ss_pred             --HccCC-CeEECCcCcHHHHHHHHHHcCCCEEEEEecCC-eEEEEEEHHHHHHhhhccccccc----------------
Confidence              78764 89999999999999999999999999999988 99999999999988542210000                


Q ss_pred             hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEe
Q 014353          342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVIT  394 (426)
Q Consensus       342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT  394 (426)
                           ..+..+..  ..+...+  .+.+..|.+.+++.++|-...|+..++++
T Consensus       215 -----~~g~~~v~--~~~~~~~--~~~a~~l~~~gvd~lvvdta~G~~~~~L~  258 (486)
T 2cu0_A          215 -----ENGELLVA--AAVSPFD--IKRAIELDKAGVDVIVVDTAHAHNLKAIK  258 (486)
T ss_dssp             -----TTSCBCCE--EEECTTC--HHHHHHHHHTTCSEEEEECSCCCCHHHHH
T ss_pred             -----cCCceeec--ceechhh--HHHHHHHHHhcCCceEEEecCCcEeehhh
Confidence                 00111111  1223333  56677888999988644333455544443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.90  E-value=7.4e-11  Score=120.36  Aligned_cols=123  Identities=19%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      ++.++|..    +++++.+++++.+++..|.+++++.+||+|.+  +++++|+||..|+.....         .....++
T Consensus       109 ~~~~im~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---------~~~~~~v  175 (514)
T 1jcn_A          109 NFEQGFIT----DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---------KDHTTLL  175 (514)
T ss_dssp             TCCTTSCS----SCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------
T ss_pred             hhhhcccc----CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---------ccCCCCH
Confidence            45677765    67789999999999999999999999999942  489999999999865321         0123567


Q ss_pred             cccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353          258 SEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP  320 (426)
Q Consensus       258 ~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~  320 (426)
                      .+    +|++ ++++++.+++++.+++++|.+++++.+||||++| +++|+||++|+++.+...
T Consensus       176 ~~----vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~~  234 (514)
T 1jcn_A          176 SE----VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCD-ELVAIIARTDLKKNRDYP  234 (514)
T ss_dssp             ---------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSS-CCC----CCCCSSCCCCT
T ss_pred             HH----HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCC-eEEEEEEHHHHHHHhhCc
Confidence            77    7876 1389999999999999999999999999999988 999999999998876543

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.79  E-value=1.9e-08  Score=73.32  Aligned_cols=52  Identities=21%  Similarity=0.404  Sum_probs=47.2

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       356 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                      ++++++++|+.+|+++|.+++++++||+| +|+++|+||.+||++.+..+...
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~   53 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKN   53 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCC
Confidence            57999999999999999999999999998 58999999999999988765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-19
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-05
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-16
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-16
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	5e-06
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-13
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	7e-09
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.002
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-13
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-13
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	6e-12
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	6e-12
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-11
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-11
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.001
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	4e-11
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	6e-11
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	8e-11
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-10
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	4e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-10
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-10
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	9e-10
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	1e-09
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-09
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	2e-09
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	2e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-08
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	1e-08
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-08
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-08
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	2e-07
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	8e-07

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (201), Expect = 3e-19
 Identities = 28/150 (18%), Positives = 63/150 (42%), Gaps = 16/150 (10%)

Query: 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
           K  + ++ + I   N +       PV+   +++ + ++  +P++++ G   +      D+
Sbjct: 5   KIPIGDLNI-ITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDV 61

Query: 314 QFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLD 373
             L+                        + E     S    G+ TC++N  +  ++  + 
Sbjct: 62  LGLIKGGIYNDLSL-------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIR 108

Query: 374 SKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
             ++HR +VVD  G L GV+TL DI+  ++
Sbjct: 109 KARVHRFFVVDDVGRLVGVLTLSDILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 10/60 (16%), Positives = 23/60 (38%)

Query: 356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFD 415
           M +C     + ++I +L   ++  + ++D NG L  V    D++  +             
Sbjct: 19  MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVG 78

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 16/153 (10%)

Query: 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313
            K L E+   I +  +I  V    PV  A  +  + ++  +PVV++ G            
Sbjct: 8   SKSLEELQ--IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGR----------- 54

Query: 314 QFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLD 373
              +       D  ++ A+     +   + +     S    G++ C  + T++ +I+ L 
Sbjct: 55  ---VVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLV 111

Query: 374 SKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406
             ++HR+ VVD +  ++G+++L DI+  LV   
Sbjct: 112 EAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 144

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 73.9 bits (180), Expect = 3e-16
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 12/151 (7%)

Query: 263 PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
           P      +  V+E  P+  A K +       +PVV+  GN  VG +   D+        I
Sbjct: 8   PYYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNL-VGIVDETDLLRDSEIVRI 65

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSG----------MVTCSRNHTIKELIHLL 372
                   +      +  +      +    L            ++  + + T+ E+   +
Sbjct: 66  MKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKM 125

Query: 373 DSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
               I ++ V+   G+L G+I   D++  LV
Sbjct: 126 AKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 51  FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGI 110
           ++ + +E +      V  +   T L  A++ L     ++ PVVD +        +  +  
Sbjct: 1   YKGVEIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL-- 56

Query: 111 VEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEAL 170
                    I+   +     +SS    +  +   +        L                
Sbjct: 57  ----LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQL---------------- 96

Query: 171 TTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNI 230
                  N  V +I                +   + L ++KY ++ +PV+  GEG +  +
Sbjct: 97  ------PNKPVAEIMTRDVI----VATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGL 145

Query: 231 ITQSSVIHML 240
           I    ++ +L
Sbjct: 146 IRDFDLLKVL 155

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
           +V       V +AF  +    +   P+ +      VG +++ D   +L     +  Y+S 
Sbjct: 25  LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINIL-----HRYYKSA 79

Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGN 388
             + +     K               +V  S N ++ + +  L   KIHR+ V+D  +GN
Sbjct: 80  LVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN 139

Query: 389 LEGVITLRDIISRLV 403
              ++T + I+  L 
Sbjct: 140 TLYILTHKRILKFLK 154

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.5 bits (125), Expect = 7e-09
 Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 173 SEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIIT 232
           + F K+ +  D+  +   +  +    S         L    +++ P+ D  + +   ++T
Sbjct: 7   TTFMKSHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLT 64

Query: 233 QSSVIHMLAE-----CAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMR 287
            +  I++L          +   E    +   E+ L       +  +  +  +  A   + 
Sbjct: 65  ITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVC-ISPNASLFDAVSSLI 123

Query: 288 RKKIGGIPVVEKGGNKAVGNISLRDI 313
           R KI  +PV++      +  ++ + I
Sbjct: 124 RNKIHRLPVIDPESGNTLYILTHKRI 149

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 19/191 (9%), Positives = 51/191 (26%), Gaps = 46/191 (24%)

Query: 51  FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGI 110
            +S       P  S+++   +   + +A   L  + + +AP+ D            ++G+
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK-------KQSFVGM 62

Query: 111 VEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEAL 170
           +        +    +    +           +  + +  +                    
Sbjct: 63  LTITDFINILHRYYKSALVQ-----------IYELEEHKIETWREVYLQDSFKPLVC--- 108

Query: 171 TTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNI 230
                                    +  + S    +  L + K+  +PV+D   G    I
Sbjct: 109 -------------------------ISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYI 143

Query: 231 ITQSSVIHMLA 241
           +T   ++  L 
Sbjct: 144 LTHKRILKFLK 154

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 264 IMS--ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
           ++    + +V +  D+ V  A + M    IG + V++      VG ++ RD        +
Sbjct: 7   LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL--VGILTERDFSRKSYLLD 64

Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
                  +                          +     N+T ++ + L+   ++  + 
Sbjct: 65  KPVKDTQVKEIMTRQ-------------------VAYVDLNNTNEDCMALITEMRVRHLP 105

Query: 382 VVDFNGNLEGVITLRDIISRLV 403
           V+D +G + G++++ D++   +
Sbjct: 106 VLD-DGKVIGLLSIGDLVKDAI 126

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
           + I + +++     +  V    K++  K I  +P+V       +      D+  L+   +
Sbjct: 6   MTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGD 64

Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
             +   S             + E   +      G+ TC     +  +   +   ++HR++
Sbjct: 65  YSNLDLS-------------VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLF 111

Query: 382 VVDFNGNLEGVITLRDIISRLVHEPP 407
           VVD N  LEG+++L DI++ ++++  
Sbjct: 112 VVDENLKLEGILSLADILNYIIYDKT 137

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 60.7 bits (146), Expect = 6e-12
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M+ +    +     +  A  LM    I  +P+V+    K +G +S RD+     +    
Sbjct: 7   MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQR 64

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                  A          + E  H D      + + +    +KE    +   KI  + VV
Sbjct: 65  SAQGDSLAFET------PLFEVMHTD------VTSVAPQAGLKESAIYMQKHKIGCLPVV 112

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
                L G+IT  D ++  ++ 
Sbjct: 113 A-KDVLVGIITDSDFVTIAINL 133

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 6e-12
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVV-EKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
            V   +   V     ++      G PVV  +   + VG +  RD+   +       D   
Sbjct: 19  TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV 78

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGM----VTCSRNHTIKELIHLLDSKKIHRIYVVD 384
            T+  + T     +  +      L + +     T +    ++ ++ +     + +  V  
Sbjct: 79  STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH 138

Query: 385 FNGNLEGVITLRDIISRLVHE 405
            NG L G+IT +D++  +   
Sbjct: 139 -NGRLLGIITKKDVLKHIAQM 158

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.0 bits (144), Expect = 1e-11
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           ++S      V ED P+ +    +    +     V +     VG I +  +  +      +
Sbjct: 9   LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKL-VGMIPVMHLLKV----SGF 62

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
           H +  I  +  + +  K +   +  +  ++   V    +  ++E + L+    I  + VV
Sbjct: 63  HFFGFIPKEELIRSSMKRLIAKNASE--IMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV 120

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           D  G + G +   +I+  L   
Sbjct: 121 DEKGEIVGDLNSLEILLALWKG 142

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 21/143 (14%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM++N    V  +  V  A K+M    + G+ V +  GN                     
Sbjct: 8   IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGN--------------------D 46

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
               S  +       R    +       +   +     ++ +K++   L    + R  VV
Sbjct: 47  VGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVV 106

Query: 384 DFNGNLEGVITLRDIISRLVHEP 406
           D  G + G++TL D+   L    
Sbjct: 107 DDPGRVVGIVTLTDLSRYLSRAS 129

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 16/155 (10%)

Query: 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHM 239
           +V  I  S     F  +  + +    + ++++  +  + V D     +  +  +S +   
Sbjct: 4   RVEKIMNS----NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF 59

Query: 240 LAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK 299
           +      +                ++    I KV  D  V      +    +    VV+ 
Sbjct: 60  IPRNKKPDEVPIR-----------LVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD 108

Query: 300 GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334
            G + VG ++L D+   L+   I     S   K++
Sbjct: 109 PG-RVVGIVTLTDLSRYLSRASITDILLSHRTKDY 142

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 58.9 bits (141), Expect = 4e-11
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 8/146 (5%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVE-KGGNKAVGNISLRDIQFLLTAPEI 322
           IM  + +  +           ++R+ K+   P V+    N  +G+I   +++ LL     
Sbjct: 16  IMVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRIS 74

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM-----VTCSRNHTIKELIHLLDSKKI 377
            +  +       L  + ++ +   +      +              ++++   L     +
Sbjct: 75  AYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGL 134

Query: 378 HRIYVVDFNGNLEGVITLRDIISRLV 403
            R YV    G L GV+ L +I + + 
Sbjct: 135 DRAYVTS-MGKLVGVVALAEIQAAIE 159

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 58.1 bits (139), Expect = 6e-11
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 16/142 (11%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
            MS   +  +Y++  + QA KLM R+    +PV++                         
Sbjct: 7   FMSTK-VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG-----IVTVVNAIKQLAK 60

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
              +      +   V+  M  +                  ++      +  K+I  + ++
Sbjct: 61  AVDKLDPDYFYGKVVKDVMVTNLVTIDE----------LASVNRAAAEMIVKRIGSLLIL 110

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           + +  + G+IT RD++  L H 
Sbjct: 111 NKDNTIRGIITERDLLIALHHI 132

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 57.1 bits (137), Expect = 8e-11
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 23/131 (17%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVE--KGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
           V +   + V   F+   R    GIP+ +  + G++ VG IS RDI F             
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDF------------- 53

Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
                      +  +    E       +V      T+KE   +L   K  ++ +V+ N  
Sbjct: 54  --------LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDE 105

Query: 389 LEGVITLRDII 399
           L  +I   D+ 
Sbjct: 106 LVAIIARTDLK 116

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM+A  +  V E E +  A + MR   IG +P+                +  +LT  +I 
Sbjct: 6   IMNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDD----------DRLHGMLTDRDIV 54

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
               +           +   +  +              N +I+E++++++  ++ R+ V+
Sbjct: 55  IKGLAAGLDPNTATAGELARDSIY----------YVDANASIQEMLNVMEEHQVRRVPVI 104

Query: 384 DFNGNLEGVITLRDIISRL 402
                L G++T  DI   L
Sbjct: 105 S-EHRLVGIVTEADIARHL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 18/135 (13%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIH 238
           T  RDI  +        + +  +       + ++ + ++P+    +     +  +  VI 
Sbjct: 1   TTARDIMNA----GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIK 56

Query: 239 MLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVE 298
            LA         +             ++ + I  V  +  + +   +M   ++  +PV+ 
Sbjct: 57  GLAAGLDPNTATAG-----------ELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS 105

Query: 299 KGGNKAVGNISLRDI 313
           +   + VG ++  DI
Sbjct: 106 EH--RLVGIVTEADI 118

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 24/142 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
            M    ++ V +D  +    K+M  K IG + VV+                         
Sbjct: 9   YMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDG-----------------------N 44

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                IT ++ + A+ K        +  + + ++T   +  I   + L+    I  + VV
Sbjct: 45  KPVGIITERDIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVV 104

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           D  GNL+G+I++RDI   +   
Sbjct: 105 DDKGNLKGIISIRDITRAIDDM 126

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.2 bits (132), Expect = 5e-10
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 23/142 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
            M+   ++ V     V +A +LM    +G + V+              ++    T  +I 
Sbjct: 10  YMTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDD----------GNVVGFFTKSDII 58

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                      +   R                    + N  + E++  +   +I  I + 
Sbjct: 59  RRVIVPGLPYDIPVERIMTRNLIT-----------ANVNTPLGEVLRKMAEHRIKHILIE 107

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           +  G + G+ TL D++      
Sbjct: 108 E-EGKIVGIFTLSDLLEASRRR 128

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 54.2 bits (129), Expect = 9e-10
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 28/142 (19%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
            ++      V E   V +    MR+ +     V +                         
Sbjct: 6   WVT-QDFPMVEESATVRECLHRMRQYQTNECIVKD----------------------REG 42

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
           H    +  ++ L         +                   I   + L    +   + VV
Sbjct: 43  HFRGVVNKEDLLDLDLDSSVFNKVSLP-----DFFVHEEDNITHALLLFLEHQEPYLPVV 97

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           D    L+G ++L D +  L+  
Sbjct: 98  DEEMRLKGAVSLHDFLEALIEA 119

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M  N    + +++ +  AFK +    IG I V      K  G ++ RD+   + +    
Sbjct: 6   LMIKN-PPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD 61

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
              +        T +  YM  +           VT          I+++ ++    + VV
Sbjct: 62  SCSQGDLYHISTTPIIDYMTPNP----------VTVYNTSDEFTAINIMVTRNFGSLPVV 111

Query: 384 DFNGNLEGVITLRDII 399
           D N    G++T R+ +
Sbjct: 112 DINDKPVGIVTEREFL 127

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           IM+ N  V +        A +L ++ K+   PVV                       +  
Sbjct: 6   IMTQN-PVTITLPATRNYALELFKKYKVRSFPVV----------------------NKEG 42

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                I+ K  L    +       +             N T+K+   L+      R+ VV
Sbjct: 43  KLVGIISVKRILVNPDEEQLAMLVKRDV-----PVVKENDTLKKAAKLMLEYDYRRVVVV 97

Query: 384 DFNGNLEGVITLRDIISRLVHE 405
           D  G   G++T+ DII R   +
Sbjct: 98  DSKGKPVGILTVGDIIRRYFAK 119

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 24/136 (17%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           +M  + +  +     +    +       G   VV++G    +                  
Sbjct: 5   VMVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAI-------- 55

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
                                       +   +VT S   TIKE    +    + R+ V 
Sbjct: 56  --------------AEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE 101

Query: 384 DFNGNLEGVITLRDII 399
           + +  + GVI+  DI+
Sbjct: 102 E-DDEIIGVISATDIL 116

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 19/134 (14%)

Query: 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHM 239
           +V D+  +        +  + S   +L    +    S  VV   EG    I+T   V+  
Sbjct: 1   RVEDVMVT----DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEA 54

Query: 240 LAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK 299
           +AE   L   + W            +    +V +     + +A + M +  +  + V E 
Sbjct: 55  IAEGDDLAEVKVW-----------EVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED 103

Query: 300 GGNKAVGNISLRDI 313
              + +G IS  DI
Sbjct: 104 D--EIIGVISATDI 115

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 17/148 (11%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 264 IM-SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
           ++ ++  ++       V  +  L+    I   P+ +   NK  G +++ D   ++     
Sbjct: 25  VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ 84

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
              +    A+     +    E      +      +     H++ +    +   +  RI +
Sbjct: 85  SSSFPEAIAEIDKFRLLGLREVERKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPL 143

Query: 383 VD-----FNGNLEGVITLRDIISRLVHE 405
           +D      +  +  V+T   I+  +   
Sbjct: 144 IDVDGETGSEMIVSVLTQYRILKFISMN 171

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
             +  +  V +A +LM+R +I G+P+VE   N+ +  I                D R I+
Sbjct: 8   FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGII------------TNRDMRFIS 55

Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
             N   +     E                +    ++    +L   +I ++ +VD +G L 
Sbjct: 56  DYNAPISEHMTSEHLVT-----------AAVGTDLETAERILHEHRIEKLPLVDNSGRLS 104

Query: 391 GVITLRDIISRLVHE 405
           G+IT++DI   +   
Sbjct: 105 GLITIKDIEKVIEFP 119

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 33/147 (22%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKK-----IGGIPVVEKGGNKAVGNISLRDIQFLLT 318
           IM+    V +  ++ V  A  +++ +      I  + VV++  +  VG ISLRD+     
Sbjct: 6   IMTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENH-LVGVISLRDLIV--- 60

Query: 319 APEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIH 378
                         +  T +   + E             +       +++   +      
Sbjct: 61  -------------NDDDTLIADILNERVI----------SVHVGDDQEDVAQTIRDYDFL 97

Query: 379 RIYVVDFNGNLEGVITLRDIISRLVHE 405
            + V D++ +L G++T+ DII  +  E
Sbjct: 98  AVPVTDYDDHLLGIVTVDDIIDVIDDE 124

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 22/136 (16%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY 323
           ++     V + E   + +    + + ++G   +  +   K    +          A  + 
Sbjct: 6   LLKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD 64

Query: 324 HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVV 383
            D  ++   N    V      H                          +    I  + VV
Sbjct: 65  LDGPAMPIANSPITVLDTDPVHVA---------------------AEKMRRHNIRHVVVV 103

Query: 384 DFNGNLEGVITLRDII 399
           + NG L GV+++RD+ 
Sbjct: 104 NKNGELVGVLSIRDLC 119

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 33/147 (22%)

Query: 264 IMSANHIVKVYEDEPVLQAFKLMRRKK-----IGGIPVVEKGGNKAVGNISLRDIQFLLT 318
           +M+    V V E   V +  + +RR       I  I VV++ G +  G +SLRD+     
Sbjct: 6   LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG-RLKGVLSLRDLIV--- 60

Query: 319 APEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIH 378
                         +  T V + M                   +   +E+  L+      
Sbjct: 61  -------------ADPRTRVAEIMNPKVV----------YVRTDTDQEEVARLMADYDFT 97

Query: 379 RIYVVDFNGNLEGVITLRDIISRLVHE 405
            + VVD  G L G++T+ D++  L  E
Sbjct: 98  VLPVVDEEGRLVGIVTVDDVLDVLEAE 124

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.8 bits (107), Expect = 8e-07
 Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 19/140 (13%)

Query: 264 IM-SANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEI 322
            M  A+ +  V     +  A  ++ +     IPV++       G I    I   +   E 
Sbjct: 7   FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRL-HGLIGTNMIMNSIFGLER 65

Query: 323 YHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYV 382
                               E+        +        +     +           + V
Sbjct: 66  IE-----------------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCV 108

Query: 383 VDFNGNLEGVITLRDIISRL 402
            +     EG+ T R ++  L
Sbjct: 109 ENDEQVFEGIFTRRVVLKEL 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.8
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.8
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.79
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.79
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.79
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.78
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.78
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.78
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.78
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.78
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.78
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.78
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.77
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.77
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.76
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.76
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.76
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.75
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.75
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.75
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.74
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.74
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.73
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.73
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.73
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.73
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.73
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.73
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.73
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.72
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.7
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.7
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.68
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.66
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.65
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.65
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.64
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.61
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.56

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=3.6e-20  Score=157.27  Aligned_cols=155  Identities=20%  Similarity=0.266  Sum_probs=111.8

Q ss_pred             hccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCC
Q 014353           51 FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPR  130 (426)
Q Consensus        51 ~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~  130 (426)
                      |+.+++..+  |.++++++++++++.+|+++|.+++++++||+|++        |+++|++|..|+++.+..........
T Consensus         1 ~~~~~v~~~--m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~--------~~lvG~it~~Dl~~~~~~~~~~~~~~   70 (156)
T d2yzqa1           1 YKGVEIEPY--YQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE--------GNLVGIVDETDLLRDSEIVRIMKSTE   70 (156)
T ss_dssp             GGGCBSTTT--SBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT--------SCEEEEEEGGGGGGCGGGCC------
T ss_pred             CCCCCHHHH--hcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC--------CCceeEEeeeechhhhcccccccccc
Confidence            678899999  99999999999999999999999999999999988        99999999999976543221100000


Q ss_pred             CCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHh
Q 014353          131 SSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLS  210 (426)
Q Consensus       131 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~  210 (426)
                                .......   .....    .... ..+.  .........++.++|.+    ++.++.+++++.+++..|.
T Consensus        71 ----------~~~~~~~---~~~~~----~~~~-~~~~--~~~~~~~~~~v~~~m~~----~~~tv~~~~~l~~~~~~m~  126 (156)
T d2yzqa1          71 ----------LAASSEE---EWILE----SHPT-LLFE--KFELQLPNKPVAEIMTR----DVIVATPHMTVHEVALKMA  126 (156)
T ss_dssp             ----------------------------------------------CCCBGGGTCBS----SCCCBCTTSBHHHHHHHHH
T ss_pred             ----------cccchhh---hhhhh----hhhh-hhHH--HhhhcccCCEeehhccc----CceEECcccccHHHHHHHH
Confidence                      0000000   00000    0000 0000  11123445689999987    8899999999999999999


Q ss_pred             hcCCcEeEEEeCCCCeEEEEEeHHHHHHHH
Q 014353          211 KYKMKSIPVVDLGEGTIDNIITQSSVIHML  240 (426)
Q Consensus       211 ~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l  240 (426)
                      +++++++||+| ++|+++|++|++|+++++
T Consensus       127 ~~~~~~lpVvd-~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         127 KYSIEQLPVIR-GEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             HHTCSEEEEEE-TTTEEEEEEEHHHHGGGG
T ss_pred             HcCeeEEEEEe-CCCEEEEEEEHHHHHHHh
Confidence            99999999999 589999999999998865

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=4.7e-20  Score=156.51  Aligned_cols=144  Identities=17%  Similarity=0.248  Sum_probs=108.9

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc--H
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT--A  331 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~--~  331 (426)
                      +.++++    +|+++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||..|+++...............  .
T Consensus         3 ~~~v~~----~m~r~-v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~-~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           3 GVEIEP----YYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDSEG-NLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GCBSTT----TSBSC-CCCEETTSBHHHHHHHHHTCSSSEEEEECTTS-CEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCHHH----HhcCC-CeEECCcCcHHHHHHHHHHcCCCEEEEEeCCC-CceeEEeeeechhhhcccccccccccccchh
Confidence            456777    88876 99999999999999999999999999999988 9999999999987654332111100000  0


Q ss_pred             HHHH---H---HHHHH--hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          332 KNFL---T---AVRKY--MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       332 ~~~~---~---~v~~~--~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                      ....   .   .....  .....++.++|.+++.+|.+++++.++++.|.+++++++||+|++|+++|+||++||+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHhC
Confidence            0000   0   00000  01113677789999999999999999999999999999999999999999999999999863

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5.8e-19  Score=146.93  Aligned_cols=134  Identities=20%  Similarity=0.441  Sum_probs=104.2

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      ..++.+++. ++.. +++++.+++++.+|++.|.+++++++||+|++| +++|+||.+|+++.+........  ....  
T Consensus         5 ~~~i~~l~~-~~~~-~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~-~~vG~it~~Di~~~~~~~~~~~~--~~~~--   77 (140)
T d2nyca1           5 KIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGIYNDL--SLSV--   77 (140)
T ss_dssp             GSBGGGSSC-CBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHTC----C--CSBH--
T ss_pred             cCcHHHhCC-ccCC-CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCC-eEcceehhhHHHHHHhhcccccc--ccch--
Confidence            567888653 4444 599999999999999999999999999999988 99999999999999875543221  1111  


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                           ...+..    ...+..++++|++++++.++++.|.+++++++||||++|+++|+||.+||+++++
T Consensus        78 -----~~~~~~----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          78 -----GEALMR----RSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             -----HHHHHH----CC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----hhhhhh----hhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence                 111111    1233457899999999999999999999999999999999999999999999986

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=6.3e-19  Score=145.17  Aligned_cols=126  Identities=20%  Similarity=0.349  Sum_probs=109.3

Q ss_pred             ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      .|+++    +|+.+ ++++.+++++.+|++.|.+++++++||+|++| +++|+||..|+++.+..++....         
T Consensus         5 ~pV~~----im~~~-~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~-~~~Giit~~di~~~~~~~~~~~~---------   69 (132)
T d2yzia1           5 APIKV----YMTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDDG-NVVGFFTKSDIIRRVIVPGLPYD---------   69 (132)
T ss_dssp             SBGGG----TCBCC-CCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTTTTCCCTT---------
T ss_pred             CcHHH----HcCCC-CeEECCcCcHHHHHHHHHHcCCcEEEEecccc-eeeeeeeHHHHHHHHhhccCccc---------
Confidence            57888    89875 99999999999999999999999999999988 99999999999988654432211         


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                                 .++.++|.+++.++++++++.++++.|.+++++++||++ +|+++|+||.+||++++..+..
T Consensus        70 -----------~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~le  130 (132)
T d2yzia1          70 -----------IPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE  130 (132)
T ss_dssp             -----------SBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCSC
T ss_pred             -----------eeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHc
Confidence                       144556777999999999999999999999999999876 6999999999999999887654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.79  E-value=6.2e-19  Score=144.20  Aligned_cols=123  Identities=27%  Similarity=0.417  Sum_probs=106.8

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN  333 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~  333 (426)
                      ...+++    +|+++ ++++.+++++.+|+++|.+++++++||+|+ + +++|++|.+|+++.+..+....         
T Consensus         3 ~~~V~d----~m~~~-~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~-~~~Givt~~dl~~~~~~~~~~~---------   66 (127)
T d2ef7a1           3 EEIVKE----YMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDG-N-KPVGIITERDIVKAIGKGKSLE---------   66 (127)
T ss_dssp             CCBGGG----TSBCS-CCEEETTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHHTTCCTT---------
T ss_pred             ccCHHH----hCCCC-CeEECCcCcHHHHHHHHHHcCCceEEeecc-c-chhhhcchhHHHHHHHhhcccc---------
Confidence            346677    89875 999999999999999999999999999986 5 8999999999999876543211         


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                                  ..+..+|.+++.++.+++++.++++.|.+++++++||+|++|+++|+||..||++++.+
T Consensus        67 ------------~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          67 ------------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ------------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ------------chhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence                        13345566699999999999999999999999999999999999999999999999864

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=6.6e-19  Score=148.90  Aligned_cols=137  Identities=20%  Similarity=0.410  Sum_probs=110.2

Q ss_pred             cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHH
Q 014353          256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFL  335 (426)
Q Consensus       256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~  335 (426)
                      |++++..+  +.++++++.+++++.+|++.|.+++++++||+|+++ +++|+|+.+|+++.+......         ...
T Consensus         2 pl~~~~ig--~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~-~~vG~it~~Dl~~~~~~~~~~---------~~~   69 (153)
T d2ooxe2           2 PLNQMTIG--TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGDYS---------NLD   69 (153)
T ss_dssp             BGGGTCCS--BCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGG-BEEEEEEHHHHHHHHGGGCGG---------GGG
T ss_pred             CHHHcCCC--CCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccc-eEEEEEEeeeeeehhcccccc---------ccc
Confidence            45554322  234599999999999999999999999999999988 999999999999887543211         112


Q ss_pred             HHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353          336 TAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG  408 (426)
Q Consensus       336 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~  408 (426)
                      .++.+++..    ...+..++++|.+++++.++++.|.+++++++||||++|+++|+||++||++++..+...
T Consensus        70 ~~v~~~~~~----~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~~~  138 (153)
T d2ooxe2          70 LSVGEALLK----RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT  138 (153)
T ss_dssp             SBHHHHHHT----SCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCTTC
T ss_pred             cchhhheee----eecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCccc
Confidence            234444432    234556889999999999999999999999999999999999999999999999876654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.7e-19  Score=149.88  Aligned_cols=139  Identities=25%  Similarity=0.428  Sum_probs=112.5

Q ss_pred             hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353          252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA  331 (426)
Q Consensus       252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~  331 (426)
                      |...+++++..+  +.++++++.+++++.+|++.|.+++++++||+|++| +++|+||..|++..+........  ..+ 
T Consensus         6 f~~~~l~~l~i~--~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~-~~~Gvit~~di~~~l~~~~~~~~--~~~-   79 (145)
T d2v8qe1           6 FMSKSLEELQIG--TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAEKTYNNL--DVS-   79 (145)
T ss_dssp             GGGSBHHHHTCS--BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGSSCCCCC--SSB-
T ss_pred             HhhCCHHHHcCC--CCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCC-ceEEEEEcchhhhhhhcccccch--hhh-
Confidence            345677776532  223599999999999999999999999999999988 99999999999988765432211  111 


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                            +.+.+    .....|..++.+|.+++++.+++++|.+++++++||+|++|+++|+||++||+++++.+.
T Consensus        80 ------v~~~~----~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~~~  144 (145)
T d2v8qe1          80 ------VTKAL----QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  144 (145)
T ss_dssp             ------HHHHG----GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             ------hhhcc----chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHhcC
Confidence                  22222    223456778999999999999999999999999999999999999999999999998764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=9.1e-20  Score=148.40  Aligned_cols=121  Identities=18%  Similarity=0.283  Sum_probs=104.7

Q ss_pred             CccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCC
Q 014353           55 PVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP  134 (426)
Q Consensus        55 ~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~  134 (426)
                      +++++  |+++++++++++++.+|+++|.+++++++||+|++        |+++|++|..||+.+++...          
T Consensus         2 t~~di--M~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------~~~~Giit~~Di~~~~~~~~----------   61 (123)
T d1y5ha3           2 TARDI--MNAGVTCVGEHETLTAAAQYMREHDIGALPICGDD--------DRLHGMLTDRDIVIKGLAAG----------   61 (123)
T ss_dssp             CHHHH--SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG--------GBEEEEEEHHHHHHTTGGGT----------
T ss_pred             CHHHh--cCCCCcEECCcCcHHHHHHHHHHcCCCceEEEecc--------chhhhhhhhhhHhhhhhhcC----------
Confidence            45666  88899999999999999999999999999999998        89999999999986544321          


Q ss_pred             chhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCC
Q 014353          135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKM  214 (426)
Q Consensus       135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~  214 (426)
                                                             .......++++|..    ++.++.+++++.+++..|.++++
T Consensus        62 ---------------------------------------~~~~~~~v~~im~~----~~~~v~~~~~~~~~~~~m~~~~~   98 (123)
T d1y5ha3          62 ---------------------------------------LDPNTATAGELARD----SIYYVDANASIQEMLNVMEEHQV   98 (123)
T ss_dssp             ---------------------------------------CCTTTSBHHHHHTT----CCCCEETTCCHHHHHHHHHHHTC
T ss_pred             ---------------------------------------CCcccceEEEEeec----cceeeeecchHHHHHHHHHHcCc
Confidence                                                   01123467888887    88999999999999999999999


Q ss_pred             cEeEEEeCCCCeEEEEEeHHHHHHHH
Q 014353          215 KSIPVVDLGEGTIDNIITQSSVIHML  240 (426)
Q Consensus       215 ~~ipVvd~~~~~l~Giis~~Dl~~~l  240 (426)
                      +++||+|  +++++|+||.+|+++++
T Consensus        99 ~~lpVvd--~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          99 RRVPVIS--EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             SEEEEEE--TTEEEEEEEHHHHHHTC
T ss_pred             eEEEEEE--CCEEEEEEEHHHHHhhC
Confidence            9999999  48999999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.78  E-value=1.2e-18  Score=142.31  Aligned_cols=114  Identities=26%  Similarity=0.404  Sum_probs=97.9

Q ss_pred             cccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC--CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHh
Q 014353          265 MSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK--GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYM  342 (426)
Q Consensus       265 m~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~--~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  342 (426)
                      |..+ ++++.+++++.+|+++|.+++++++||+|+  ++ +++|+||.+|+......+..                    
T Consensus         3 mi~d-pvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~-~lvGivt~~Di~~~~~~~~~--------------------   60 (126)
T d1zfja4           3 VIID-PFFLTPEHKVSEAEELMQRYRISGVPIVETLANR-KLVGIITNRDMRFISDYNAP--------------------   60 (126)
T ss_dssp             TSSS-CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTC-BEEEEEEHHHHHHCSCSSSB--------------------
T ss_pred             CEeC-ceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCC-eEEEEeEHHHHHHhhccCCc--------------------
Confidence            3344 789999999999999999999999999997  55 89999999999877433211                    


Q ss_pred             hhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          343 EEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       343 ~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                          .....+..+++++++++++.+|+++|.+++++++||||++|+++|+||++||++++..
T Consensus        61 ----~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          61 ----ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             ----TTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ----eeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                1223456688999999999999999999999999999999999999999999998764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=1.4e-19  Score=147.31  Aligned_cols=117  Identities=24%  Similarity=0.398  Sum_probs=98.4

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|+++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+|++......+..  ...       ..+.++|.
T Consensus         6 iM~~~-~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~-~~~Giit~~Di~~~~~~~~~~--~~~-------~~v~~im~   74 (123)
T d1y5ha3           6 IMNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDDD-RLHGMLTDRDIVIKGLAAGLD--PNT-------ATAGELAR   74 (123)
T ss_dssp             HSEET-CCCEETTSBHHHHHHHHHHHTCSEEEEECGGG-BEEEEEEHHHHHHTTGGGTCC--TTT-------SBHHHHHT
T ss_pred             hcCCC-CcEECCcCcHHHHHHHHHHcCCCceEEEeccc-hhhhhhhhhhHhhhhhhcCCC--ccc-------ceEEEEee
Confidence            78875 99999999999999999999999999999988 999999999998765433211  011       12344443


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                                +++.++++++++.+|++.|.+++++++||+| +|+++|+||.+||++++
T Consensus        75 ----------~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          75 ----------DSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             ----------TCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             ----------ccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence                      4899999999999999999999999999999 58999999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=5.1e-19  Score=147.06  Aligned_cols=132  Identities=17%  Similarity=0.253  Sum_probs=111.7

Q ss_pred             CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCC
Q 014353           54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSS  133 (426)
Q Consensus        54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~  133 (426)
                      ++++++  |+++++++++++|+.+|+++|.+++++++||+|++        |+++|+||..|++.++........     
T Consensus         2 i~v~di--M~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~--------~~~~Giit~~dl~~~~~~~~~~~~-----   66 (139)
T d2o16a3           2 IKVEDM--MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN--------KKLLGIVSQRDLLAAQESSLQRSA-----   66 (139)
T ss_dssp             CBGGGT--SEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHHHCC--------
T ss_pred             EEHHHh--CcCCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc--------ccccccccHHHHHHHHHhhhhhhh-----
Confidence            467777  88999999999999999999999999999999988        999999999999988765432111     


Q ss_pred             CchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcC
Q 014353          134 PSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYK  213 (426)
Q Consensus       134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~  213 (426)
                                                           .........++.++|..    ++.++++++++.+++..|.+++
T Consensus        67 -------------------------------------~~~~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~  105 (139)
T d2o16a3          67 -------------------------------------QGDSLAFETPLFEVMHT----DVTSVAPQAGLKESAIYMQKHK  105 (139)
T ss_dssp             -------------------------------------------CCCBHHHHSCS----CEEEBCTTSBHHHHHHHHHHTT
T ss_pred             -------------------------------------cccccccccchhHhhcc----ccccccccchHHHHHHHHHHcC
Confidence                                                 01122345679999987    8999999999999999999999


Q ss_pred             CcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          214 MKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       214 ~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      ++++||+|  +|+++|+||.+|+++++.+.
T Consensus       106 ~~~lpVvd--~~~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3         106 IGCLPVVA--KDVLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             CSCEEEEE--TTEEEEEECHHHHHHHHHHH
T ss_pred             ceEEEEEE--CCEEEEEEEHHHHHHHHHHH
Confidence            99999999  58999999999999998643

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.1e-19  Score=147.64  Aligned_cols=115  Identities=29%  Similarity=0.375  Sum_probs=87.0

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|+++ ++++++++++.+|++.|.+++++++||+|++| +++|+||.+|++.....                .       
T Consensus         6 iM~~~-~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~-~~~G~it~~dl~~~~~~----------------~-------   60 (122)
T d2yzqa2           6 IMTQN-PVTITLPATRNYALELFKKYKVRSFPVVNKEG-KLVGIISVKRILVNPDE----------------E-------   60 (122)
T ss_dssp             HSEES-CCCEESSCC------------CCEEEEECTTC-CEEEEEESSCC------------------------------
T ss_pred             ccCCC-CEEECCcCcHHHHHHHHHHcCCcEEEEEeccc-cchhhhhcchhhhhhcc----------------c-------
Confidence            78875 99999999999999999999999999999988 99999999998765211                1       


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                         .+.++|.+++++|++++++.++++.|.+++++++||+|++|+++|+||.+||+++++.+.
T Consensus        61 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~~  120 (122)
T d2yzqa2          61 ---QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS  120 (122)
T ss_dssp             ------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC
T ss_pred             ---chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhHh
Confidence               344566779999999999999999999999999999999999999999999999987764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=2.7e-19  Score=148.76  Aligned_cols=130  Identities=18%  Similarity=0.221  Sum_probs=103.9

Q ss_pred             cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHH
Q 014353          256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFL  335 (426)
Q Consensus       256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~  335 (426)
                      ++++    +|+++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+|++++......  ..  ..     
T Consensus         3 ~v~d----iM~~~-~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~-~~~Giit~~dl~~~~~~~~~--~~--~~-----   67 (139)
T d2o16a3           3 KVED----MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDANK-KLLGIVSQRDLLAAQESSLQ--RS--AQ-----   67 (139)
T ss_dssp             BGGG----TSEES-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHCC-------------
T ss_pred             EHHH----hCcCC-CeEECCcCCHHHHHHHHHHcCCCeeeeecccc-cccccccHHHHHHHHHhhhh--hh--hc-----
Confidence            4566    88875 99999999999999999999999999999988 99999999999988643210  00  00     


Q ss_pred             HHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          336 TAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       336 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                         .+......++.++|.+++.+|++++++.+|+++|.+++++++||+| +|+++|+||.+||++++..
T Consensus        68 ---~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          68 ---GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             --------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHH
T ss_pred             ---ccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence               0000011123344556999999999999999999999999999999 5899999999999999865

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1e-18  Score=143.85  Aligned_cols=125  Identities=18%  Similarity=0.289  Sum_probs=110.3

Q ss_pred             cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      ..|++++  |+++++++++++|+.+|+++|.+++++++||+|++        |+++|++|..|++++++...        
T Consensus         4 ~~pV~~i--m~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~--------~~~~Giit~~di~~~~~~~~--------   65 (132)
T d2yzia1           4 KAPIKVY--MTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD--------GNVVGFFTKSDIIRRVIVPG--------   65 (132)
T ss_dssp             TSBGGGT--CBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHTTTTC--------
T ss_pred             CCcHHHH--cCCCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc--------ceeeeeeeHHHHHHHHhhcc--------
Confidence            3588888  99999999999999999999999999999999998        99999999999987654321        


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                                                                .....+++++|.+    ++.++.+++++.+++..|.++
T Consensus        66 ------------------------------------------~~~~~~v~~im~~----~~~~v~~~~~~~~~~~~m~~~   99 (132)
T d2yzia1          66 ------------------------------------------LPYDIPVERIMTR----NLITANVNTPLGEVLRKMAEH   99 (132)
T ss_dssp             ------------------------------------------CCTTSBGGGTCBC----SCCEEETTSBHHHHHHHHHHH
T ss_pred             ------------------------------------------CccceeEeecccc----cccccCcchHHHHHHHHHHHc
Confidence                                                      1123578899987    889999999999999999999


Q ss_pred             CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      +++++||++  +|+++|++|..|+++++.+.
T Consensus       100 ~~~~l~V~~--~~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1         100 RIKHILIEE--EGKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             TCSEEEEEE--TTEEEEEEEHHHHHHHHHCC
T ss_pred             CCCEEEEEE--CCEEEEEEEHHHHHHHHHHH
Confidence            999999877  68999999999999988643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.78  E-value=8.1e-19  Score=146.38  Aligned_cols=124  Identities=23%  Similarity=0.311  Sum_probs=106.4

Q ss_pred             cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHH
Q 014353          256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFL  335 (426)
Q Consensus       256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~  335 (426)
                      .+++    +|+++ +.++++++++.+|++.|.+++++++||+|++| +++|+||.+|+++.+...+..  .         
T Consensus         4 ~v~d----im~~~-~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~-~~~Giit~~di~~~~~~~~~~--~---------   66 (142)
T d1pvma4           4 RVEK----IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG-NDVGLLSERSIIKRFIPRNKK--P---------   66 (142)
T ss_dssp             BGGG----TSBTT-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHTGGGCCC--G---------
T ss_pred             EHHH----hCCCC-CcEECCcCcHHHHHHHHHHCCCceEeeeccCC-cccceEEeechhhhhhhhccc--c---------
Confidence            4566    89876 99999999999999999999999999999988 999999999998775432210  0         


Q ss_pred             HHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          336 TAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       336 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                              ...+++++|.++++++++++++.+++++|.+++++++||+|++|+++|+||..||++++..
T Consensus        67 --------~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          67 --------DEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             --------GGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             --------cccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence                    0114456677799999999999999999999999999999999999999999999997754

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.2e-18  Score=141.18  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=103.0

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|+++ ++++.+++++.+|+++|.+++++++||+|+++ +++|+++.+|+++....                        
T Consensus         6 ~m~~~-~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~-~~~Gii~~~dl~~~~~~------------------------   59 (121)
T d1vr9a3           6 WVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDREG-HFRGVVNKEDLLDLDLD------------------------   59 (121)
T ss_dssp             GCBSC-SCEEETTCBHHHHHHHHHHTTSSEEEEECTTS-BEEEEEEGGGGTTSCTT------------------------
T ss_pred             hhcCC-CeEECCCCCHHHHHHhhhhcCcEEEEEEeCCc-eeEEEeehhhhhhhhcc------------------------
Confidence            78875 99999999999999999999999999999888 99999999999755211                        


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~  406 (426)
                        ..+.++|..++.++++++++.+++++|.+++..++||+|++|+++|+||..|+++++.+++
T Consensus        60 --~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          60 --SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             --SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             --ccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence              1344556668999999999999999999999999999999999999999999999998874

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=7.5e-19  Score=146.34  Aligned_cols=130  Identities=21%  Similarity=0.317  Sum_probs=107.2

Q ss_pred             cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHH
Q 014353          256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFL  335 (426)
Q Consensus       256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~  335 (426)
                      |+++    +|+++ ++++++++++.+|+++|.+++++++||+|+++ +++|+++..|+++.+.......    .......
T Consensus         3 ~V~~----iMt~~-v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~-~~~g~i~~~di~~~~~~~~~~~----~~~~~~~   72 (141)
T d3ddja1           3 PVKV----FMSTK-VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKAVDKL----DPDYFYG   72 (141)
T ss_dssp             BHHH----HSBCS-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHHHHHT----CTHHHHT
T ss_pred             eeHH----hCcCC-CeEEcCcCcHHHHHHHHHHcCCCeeecccccC-ccccccccccchhhhhcccccc----ccccccC
Confidence            5667    89886 99999999999999999999999999999988 9999999999998864321100    0000111


Q ss_pred             HHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          336 TAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       336 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      .++.          ++|.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++.+.
T Consensus        73 ~~v~----------~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          73 KVVK----------DVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             CBHH----------HHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             CCHH----------HHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHH
Confidence            2233          44556999999999999999999999999999999999999999999999998754

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4.2e-19  Score=151.05  Aligned_cols=152  Identities=14%  Similarity=0.199  Sum_probs=117.3

Q ss_pred             HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353           46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE  125 (426)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~  125 (426)
                      .+++.+...+++++-+.+.+++++++++|+.+|+++|.+|++.++||+|++.       ++++|+|+..|++.++.....
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~-------~~~vG~is~~Dl~~~~~~~~~   77 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFINILHRYYK   77 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCC-------CcEEEEEEHHHHHHHHHhccc
Confidence            4778888899999844478999999999999999999999999999999754       899999999999988765321


Q ss_pred             CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353          126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM  205 (426)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~  205 (426)
                      ...              .+..                   ...  ............++|..    +++++.+++++.++
T Consensus        78 ~~~--------------~~~~-------------------~~~--~~~~~~~~~~~~~~~~~----~~~~v~~~~~l~~v  118 (159)
T d2v8qe2          78 SAL--------------VQIY-------------------ELE--EHKIETWREVYLQDSFK----PLVCISPNASLFDA  118 (159)
T ss_dssp             HHT--------------TTCC-------------------CGG--GCBHHHHHHHHSSSSCC----CCCCBCTTSBHHHH
T ss_pred             ccc--------------chhh-------------------hhh--hhhcccccceeeeeecc----ceEEECCCCcHHHH
Confidence            000              0000                   000  00001111234455555    88999999999999


Q ss_pred             HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      +..|.++++|++||+|.++|+++|+||++|+++++..+
T Consensus       119 ~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2         119 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             HHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence            99999999999999986678999999999999999744

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.76  E-value=2.7e-18  Score=140.32  Aligned_cols=113  Identities=19%  Similarity=0.316  Sum_probs=97.1

Q ss_pred             CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353          269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE  348 (426)
Q Consensus       269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (426)
                      +++++.+++++.+|+++|.+++++++||+|+ + +++|+||.+|+++.+...+...         .          ...+
T Consensus        14 ~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~-~-~~vGiit~~Di~~~~~~~~~~~---------~----------~~~v   72 (127)
T d2rc3a1          14 TVVAIGPDDSVFNAMQKMAADNIGALLVMKD-E-KLVGILTERDFSRKSYLLDKPV---------K----------DTQV   72 (127)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHGGGSSSCG---------G----------GSBG
T ss_pred             ccEEECCcCcHHHHHHHHHHcCCCEEEEEEC-C-eEEEEEEccchhhhhhhhcccc---------c----------ceeE
Confidence            5999999999999999999999999999984 6 9999999999988754322100         0          1145


Q ss_pred             CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                      .++|.+++.+|.+++++.+|++.|.+++++++||+| +|+++|+||.+||+++++
T Consensus        73 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          73 KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             eeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            566777999999999999999999999999999999 699999999999999875

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.4e-18  Score=145.32  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=102.6

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|+.+ ++++.+++++.+|++.|.+++++++||+|+++ +++|+||.+||++++........    .....   ......
T Consensus         9 ~m~~~-p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~-~~vGiis~~Dl~~~~~~~~~~~~----~~~~~---~~~~~~   79 (145)
T d1o50a3           9 LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFI----PKEEL---IRSSMK   79 (145)
T ss_dssp             SSCCC-CEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCC----C----------CCC
T ss_pred             hCCCC-CEEECCcCcHHHHHHHHHHcCCceEEEeccCc-ceeeeeccchhhhhhhccccccc----chhHH---HHhhhh
Confidence            77775 89999999999999999999999999999988 99999999999988643321100    00000   000000


Q ss_pred             h-c-CCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          344 E-H-HHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       344 ~-~-~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                      . . ..+.. +..+++++++++++.+|+++|.+++++++||||++|+++|+||.+||++++.++..
T Consensus        80 ~~~~~~~~~-~~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~~  144 (145)
T d1o50a3          80 RLIAKNASE-IMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGRE  144 (145)
T ss_dssp             CCSSCBHHH-HCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSCC
T ss_pred             hccccCHHH-HcCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcCc
Confidence            0 0 01111 12367899999999999999999999999999999999999999999999987653

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.76  E-value=1.5e-18  Score=150.52  Aligned_cols=148  Identities=12%  Similarity=0.163  Sum_probs=110.0

Q ss_pred             cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc--
Q 014353          254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT--  330 (426)
Q Consensus       254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~--  330 (426)
                      ...+.+    +|.+ .++++++++.++.+|++.|.+++++++||+|+++++++|++|.+|+++.+.............  
T Consensus        19 ~~~~~d----vm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~   94 (179)
T d2ooxe1          19 SRTSYD----VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAE   94 (179)
T ss_dssp             HSBHHH----HSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGG
T ss_pred             CCEeee----eCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhh
Confidence            456677    6654 359999999999999999999999999999965449999999999998764321111100000  


Q ss_pred             HHH-HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC-----cEEEEEeHHHHHHHHHh
Q 014353          331 AKN-FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG-----NLEGVITLRDIISRLVH  404 (426)
Q Consensus       331 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~-----~liGvIT~~Dll~~l~~  404 (426)
                      ... ....+....    .....|..++++|.++++|.+|+++|.++++|++||+|++|     +++|+||++||++++..
T Consensus        95 ~~~~~~~~~~~~~----~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1          95 IDKFRLLGLREVE----RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             GGGSBHHHHHHHH----HHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             hhccchhhhcccc----eeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            000 001111111    22346778999999999999999999999999999999764     69999999999999998


Q ss_pred             CCCCc
Q 014353          405 EPPGY  409 (426)
Q Consensus       405 ~~~~~  409 (426)
                      +...+
T Consensus       171 ~~~~~  175 (179)
T d2ooxe1         171 NCKET  175 (179)
T ss_dssp             TCGGG
T ss_pred             hhhHh
Confidence            76644

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1e-18  Score=142.82  Aligned_cols=114  Identities=22%  Similarity=0.345  Sum_probs=99.4

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhc-----CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRK-----KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAV  338 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  338 (426)
                      +|+++ ++++++++++.+|++.|.++     +++.+||+|+++ +++|+++.++++..-.                ..++
T Consensus         6 iM~~d-~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~-~l~G~v~~~~l~~~~~----------------~~~v   67 (127)
T d2ouxa2           6 IMTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQEN-HLVGVISLRDLIVNDD----------------DTLI   67 (127)
T ss_dssp             HCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTC-BEEEEEEHHHHTTSCT----------------TSBH
T ss_pred             hCCCC-cEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCC-eEEEEEEeeccccccc----------------cEEh
Confidence            89886 99999999999999999887     478999999998 9999999999975411                1234


Q ss_pred             HHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          339 RKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      .++|          .+++.++++++++.+|++.|.+++++++||||++|+++|+||..||++.+-++
T Consensus        68 ~~im----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          68 ADIL----------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             HHHS----------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             hhhc----------cCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            5554          45899999999999999999999999999999999999999999999988654

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=3.2e-18  Score=145.44  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=107.4

Q ss_pred             cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccc--cc
Q 014353          254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS--IT  330 (426)
Q Consensus       254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~--~~  330 (426)
                      ..++.+    +|.. .+++++..++++.+|++.|.+++++++||+|+++++++|+||.+|++..+...........  ..
T Consensus        12 ~~t~~D----lm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~   87 (159)
T d2v8qe2          12 SHRCYD----LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELE   87 (159)
T ss_dssp             HSBGGG----GSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGG
T ss_pred             CCEEEe----ECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhh
Confidence            456777    5643 4589999999999999999999999999998754499999999999988754321110000  00


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHHhCC
Q 014353          331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGNLEGVITLRDIISRLVHEP  406 (426)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~liGvIT~~Dll~~l~~~~  406 (426)
                      ........       ......|.+++++|++++++.+|+++|.++++|++||+|+ +|+++|+||++||++++...+
T Consensus        88 ~~~~~~~~-------~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2          88 EHKIETWR-------EVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             GCBHHHHH-------HHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             hhhccccc-------ceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence            00000000       1233566779999999999999999999999999999984 689999999999999987543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=8.4e-19  Score=146.60  Aligned_cols=116  Identities=26%  Similarity=0.359  Sum_probs=103.1

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcC-----CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKK-----IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAV  338 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  338 (426)
                      +|+++ ++++++++++.+|++.|.+++     ++.+||+|++| +++|+++.+|+.....                    
T Consensus         6 iM~~~-~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~-~l~G~v~~~dl~~~~~--------------------   63 (144)
T d2yvxa2           6 LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG-RLKGVLSLRDLIVADP--------------------   63 (144)
T ss_dssp             GCBSC-CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTC-BBCCBCBHHHHTTSCT--------------------
T ss_pred             ccCCC-CEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCC-CEecccchhhhhhccc--------------------
Confidence            89986 999999999999999998764     78999999998 9999999999865421                    


Q ss_pred             HHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353          339 RKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP  407 (426)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~  407 (426)
                            ...+.++|.++++++++++++.+|++.|.+++++++||||++|+++|+||.+||++++..+..
T Consensus        64 ------~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~  126 (144)
T d2yvxa2          64 ------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEAT  126 (144)
T ss_dssp             ------TCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHH
T ss_pred             ------ccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhH
Confidence                  125567788899999999999999999999999999999999999999999999999976543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=1.9e-18  Score=144.12  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=109.3

Q ss_pred             CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCC
Q 014353           54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSS  133 (426)
Q Consensus        54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~  133 (426)
                      +.++++  |+++++++++++|+.+|++.|.+++++.+||+|++        |+++|+||..|+++++.....        
T Consensus         3 m~v~di--m~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~--------~~~~Giit~~di~~~~~~~~~--------   64 (142)
T d1pvma4           3 MRVEKI--MNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------GNDVGLLSERSIIKRFIPRNK--------   64 (142)
T ss_dssp             CBGGGT--SBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT--------SCEEEEEEHHHHHHHTGGGCC--------
T ss_pred             EEHHHh--CCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccC--------CcccceEEeechhhhhhhhcc--------
Confidence            456777  89999999999999999999999999999999998        899999999999877553210        


Q ss_pred             CchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcC
Q 014353          134 PSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYK  213 (426)
Q Consensus       134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~  213 (426)
                                                               .....+++++|..    +++++.+++++.++++.|.+++
T Consensus        65 -----------------------------------------~~~~~~v~~im~~----~~~~v~~~~~l~~~~~~m~~~~   99 (142)
T d1pvma4          65 -----------------------------------------KPDEVPIRLVMRK----PIPKVKSDYDVKDVAAYLSENG   99 (142)
T ss_dssp             -----------------------------------------CGGGSBGGGTSBS----SCCEEETTCBHHHHHHHHHHHT
T ss_pred             -----------------------------------------ccccccccccccc----ccccccchhhHHHHHHHHHHcC
Confidence                                                     1224568899987    8999999999999999999999


Q ss_pred             CcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          214 MKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       214 ~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      ++++||+| ++|+++|++|..|+++++.+
T Consensus       100 ~~~lpVvd-~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4         100 LERCAVVD-DPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             CSEEEEEC-TTCCEEEEEEHHHHTTTSCH
T ss_pred             CcEEEEEe-cCCEEEEEEEHHHHHHHHhh
Confidence            99999999 48999999999999997753

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=1.5e-18  Score=142.95  Aligned_cols=128  Identities=16%  Similarity=0.188  Sum_probs=103.1

Q ss_pred             cccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353          256 KLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF  334 (426)
Q Consensus       256 ~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~  334 (426)
                      ++++    +|.+ +.++++.+++++.+|+++|.+++++++||+|++| +++|++|.+|+++.+....... +..    ..
T Consensus         3 tv~~----~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~-~~vGiit~~di~~~~~~~~~~~-~~~----~~   72 (132)
T d1yava3           3 TVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY-RLHGLIGTNMIMNSIFGLERIE-FEK----LD   72 (132)
T ss_dssp             BHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTC-BEEEEEEHHHHHHHHBCSSSBC-GGG----TT
T ss_pred             CHHH----ccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeeccc-ccccEEEcchhHHHhhcccccc-ccc----cc
Confidence            4566    6644 4599999999999999999999999999999988 9999999999999986542211 000    01


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353          335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE  405 (426)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~  405 (426)
                      ..++.++          |.+++.++++++++.++++.|.+++  .+||+|++|+++|+||.+||++++.+.
T Consensus        73 ~~~v~~~----------m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          73 QITVEEV----------MLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             TSBHHHH----------SBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccccccc----------ccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            1234444          4458999999999999999998764  599999999999999999999998764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.75  E-value=1.2e-17  Score=136.41  Aligned_cols=122  Identities=26%  Similarity=0.445  Sum_probs=108.7

Q ss_pred             ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353          178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL  257 (426)
Q Consensus       178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v  257 (426)
                      ...|+++|.+    +++++.+++++.+++..|.+++++++||+|  +++++|++|..|+++.+......       ..++
T Consensus         3 ~~~V~d~m~~----~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d--~~~~~Givt~~dl~~~~~~~~~~-------~~~v   69 (127)
T d2ef7a1           3 EEIVKEYMKT----QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSL-------ETKA   69 (127)
T ss_dssp             CCBGGGTSBC----SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCCT-------TCBG
T ss_pred             ccCHHHhCCC----CCeEECCcCcHHHHHHHHHHcCCceEEeec--ccchhhhcchhHHHHHHHhhccc-------cchh
Confidence            4578999997    899999999999999999999999999998  58999999999999988754332       2466


Q ss_pred             cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      .+    +|.++ ++++.+++++.++++.|.+++++++||+|++| +++|+||..||++++.
T Consensus        70 ~~----~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          70 EE----FMTAS-LITIREDSPITGALALMRQFNIRHLPVVDDKG-NLKGIISIRDITRAID  124 (127)
T ss_dssp             GG----TSEEC-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             hh----hhhhh-ccccccccchhHHHHHHHHcCceEEEEEeCCC-eEEEEEEHHHHHHHHH
Confidence            66    77764 99999999999999999999999999999988 9999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=4e-18  Score=137.85  Aligned_cols=115  Identities=21%  Similarity=0.270  Sum_probs=98.8

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|+++ ++++.+++++.+|++.|.+++++++||+++ | +++|+||.+||++.+..+....   .       .++.++| 
T Consensus         5 iM~~~-~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~-~-~~~Gvit~~Di~~~l~~~~~~~---~-------~~v~~~m-   70 (120)
T d1pbja3           5 VMVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKE-G-VRVGIVTTWDVLEAIAEGDDLA---E-------VKVWEVM-   70 (120)
T ss_dssp             HCBCS-CCEEETTCBHHHHHHHHHHHCCCEEEEEET-T-EEEEEEEHHHHHHHHHHTCCTT---T-------SBHHHHC-
T ss_pred             hCCCC-CeEECCcCcHHHHHHHHHHcCceEEEEEeC-C-cEEEEEEeeecccccccccccc---c-------eeEeeec-
Confidence            78875 999999999999999999999999999875 6 9999999999999876553221   1       1244444 


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                               .+++.++++++++.+|++.|.+++++++||++ +|+++|+||.+||+++.
T Consensus        71 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          71 ---------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             ---------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---------ccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence                     44899999999999999999999999999987 69999999999999975

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=1.6e-18  Score=143.20  Aligned_cols=127  Identities=18%  Similarity=0.160  Sum_probs=104.9

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME  343 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (426)
                      +|.++ ++++.+++++.+|++.|.+++++++||+|+   +++|+++..|+++.+.........        .......  
T Consensus         6 lM~~~-~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--   71 (135)
T d3ddja2           6 LMIKN-PPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCS--------QGDLYHI--   71 (135)
T ss_dssp             TCEES-CCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CC--------HHHHHHH--
T ss_pred             EeeCC-CeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchh--------hhhcccc--
Confidence            78875 899999999999999999999999999974   799999999999887544321110        0111111  


Q ss_pred             hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                      ...+++++|..++.+|++++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..
T Consensus        72 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          72 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             ccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            1236777888899999999999999999999999999999999999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.74  E-value=1.8e-17  Score=140.64  Aligned_cols=145  Identities=17%  Similarity=0.229  Sum_probs=110.2

Q ss_pred             cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHHHhhCCcccccc----cc
Q 014353          254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG-NKAVGNISLRDIQFLLTAPEIYHDY----RS  328 (426)
Q Consensus       254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~~~~~~~~~~~----~~  328 (426)
                      ..++++    +|+++ ++++++++++.+++++|.+++++++||+|+++ +.++|+++..|++.++.........    ..
T Consensus        10 ~~~V~d----iM~~~-~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~   84 (160)
T d2d4za3          10 NIQVGD----IMVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM   84 (160)
T ss_dssp             SCBTTS----SSBSS-CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC
T ss_pred             ceEHHH----hcCCC-CeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc
Confidence            346677    89875 99999999999999999999999999999532 2899999999999887542211000    00


Q ss_pred             ccHHHHHHHH-HHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353          329 ITAKNFLTAV-RKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH  404 (426)
Q Consensus       329 ~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~  404 (426)
                      .......... .........+...|.++++++.+++++.+++++|.+++++++||+| +|+++|+||++||++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          85 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhCC
Confidence            1111111111 1111122356678899999999999999999999999999999998 6999999999999999864

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=7.9e-18  Score=140.01  Aligned_cols=128  Identities=22%  Similarity=0.285  Sum_probs=111.6

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      +|+++|.+    .+.++.+++++.+++..|.+++++++||+| ++++++|+++..|+++.+...............++.+
T Consensus         3 ~V~~iMt~----~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~-~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           3 PVKVFMST----KVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             BHHHHSBC----SCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             eeHHhCcC----CCeEEcCcCcHHHHHHHHHHcCCCeeeccc-ccCccccccccccchhhhhccccccccccccCCCHHH
Confidence            68999997    899999999999999999999999999999 4899999999999998885443222223344567777


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                          +|+++ ++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+.
T Consensus        78 ----im~~~-~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~-~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          78 ----VMVTN-LVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALH  130 (141)
T ss_dssp             ----HSBCC-CCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             ----HhCcc-cccccccchhhHHHHHHHHcCCCEEEEEccCC-EEEEEEEHHHHHHHHH
Confidence                78875 99999999999999999999999999999988 9999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=2.1e-17  Score=138.11  Aligned_cols=133  Identities=14%  Similarity=0.146  Sum_probs=106.9

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA  141 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~  141 (426)
                      |+.+++++.+++|+.+|++.|.++++.++||+|++        ++++|+||..||++++..........           
T Consensus        10 m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~--------~~~vGiis~~Dl~~~~~~~~~~~~~~-----------   70 (145)
T d1o50a3          10 ISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD--------NKLVGMIPVMHLLKVSGFHFFGFIPK-----------   70 (145)
T ss_dssp             SCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET--------TEEEEEEEHHHHHHHHHHHHHCCCC------------
T ss_pred             CCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccC--------cceeeeeccchhhhhhhcccccccch-----------
Confidence            78899999999999999999999999999999988        89999999999998876543111000           


Q ss_pred             hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353          142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD  221 (426)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd  221 (426)
                               ...            +.   ..........+.++|.     .++++.+++++.+++..|.+++++++||+|
T Consensus        71 ---------~~~------------~~---~~~~~~~~~~~~~~~~-----~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd  121 (145)
T d1o50a3          71 ---------EEL------------IR---SSMKRLIAKNASEIML-----DPVYVHMDTPLEEALKLMIDNNIQEMPVVD  121 (145)
T ss_dssp             ------------------------------CCCCCSSCBHHHHCB-----CCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ---------hHH------------HH---hhhhhccccCHHHHcC-----CCEEEcCCCCHHHHHHHHHHcCceEEEEEe
Confidence                     000            00   1112234456777876     556899999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhc
Q 014353          222 LGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       222 ~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                       ++|+++|+||.+|+++++.++
T Consensus       122 -~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3         122 -EKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             -TTSCEEEEEEHHHHHHHHHHS
T ss_pred             -CCCeEEEEEEHHHHHHHHHhc
Confidence             489999999999999999765

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=5.2e-18  Score=147.09  Aligned_cols=155  Identities=16%  Similarity=0.241  Sum_probs=111.5

Q ss_pred             HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353           47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP  126 (426)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~  126 (426)
                      ++..+....|.++.+.+.++++++++.|+.+|++.|.++++.++||+|++.       ++++|+||..||+.++......
T Consensus        13 i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~-------~~~vGiis~~Di~~~l~~~~~~   85 (179)
T d2ooxe1          13 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYYYQS   85 (179)
T ss_dssp             HHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCC-------CeeEEEEeechHHHHHHhcccc
Confidence            444555566666633356999999999999999999999999999999764       8999999999999987654211


Q ss_pred             CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHH
Q 014353          127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTML  206 (426)
Q Consensus       127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l  206 (426)
                      ....            ..                  ...+. ...............+|..    +++++.+++++.+++
T Consensus        86 ~~~~------------~~------------------~~~~~-~~~~~~~~~~~~~~~~~~~----~~i~v~~~~sl~~~~  130 (179)
T d2ooxe1          86 SSFP------------EA------------------IAEID-KFRLLGLREVERKIGAIPP----ETIYVHPMHSLMDAC  130 (179)
T ss_dssp             CSCG------------GG------------------GGGGG-GSBHHHHHHHHHHTTCSCS----SCCCBCTTSBHHHHH
T ss_pred             ccch------------hh------------------hhhhh-ccchhhhcccceeeeeccc----CceEECCCCcHHHHH
Confidence            1100            00                  00000 0000001111234445655    899999999999999


Q ss_pred             HHHhhcCCcEeEEEeCC----CCeEEEEEeHHHHHHHHHhc
Q 014353          207 LLLSKYKMKSIPVVDLG----EGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       207 ~~l~~~~~~~ipVvd~~----~~~l~Giis~~Dl~~~l~~~  243 (426)
                      ..|.++++|++||+|.+    +++++|++|++||++++..+
T Consensus       131 ~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         131 LAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             HHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             HHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            99999999999999842    23799999999999999644

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=3.2e-17  Score=132.41  Aligned_cols=119  Identities=24%  Similarity=0.246  Sum_probs=105.5

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      +|+++|++    ++.++.+++++.+++..|.+++++++||.+  +++++|++|..|+++++.......      ..++.+
T Consensus         1 kV~diM~~----~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~--~~~~~Gvit~~Di~~~l~~~~~~~------~~~v~~   68 (120)
T d1pbja3           1 RVEDVMVT----DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDDLA------EVKVWE   68 (120)
T ss_dssp             CHHHHCBC----SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCCTT------TSBHHH
T ss_pred             ChHHhCCC----CCeEECCcCcHHHHHHHHHHcCceEEEEEe--CCcEEEEEEeeecccccccccccc------ceeEee
Confidence            47899998    899999999999999999999999999998  589999999999999987654332      457777


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL  317 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~  317 (426)
                          +|+++ ++++++++++.+|++.|.+++++++||+++ | +++|++|.+|++++.
T Consensus        69 ----~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~-~-~l~Givt~~Dil~A~  119 (120)
T d1pbja3          69 ----VMERD-LVTISPRATIKEAAEKMVKNVVWRLLVEED-D-EIIGVISATDILRAK  119 (120)
T ss_dssp             ----HCBCG-GGEECTTSCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHH
T ss_pred             ----ecccc-cccccchhHHHHHHHHHHHcCCeEEEEEEC-C-EEEEEEEHHHHHhcC
Confidence                78775 999999999999999999999999999874 6 999999999999873

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=4.4e-18  Score=140.03  Aligned_cols=129  Identities=17%  Similarity=0.203  Sum_probs=106.9

Q ss_pred             CccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCC
Q 014353           55 PVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP  134 (426)
Q Consensus        55 ~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~  134 (426)
                      ++.++-.+.++++++++++|+.+|+++|.+++++++||+|++        |+++|+++..||+++++.....        
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~--------~~~vGiit~~di~~~~~~~~~~--------   66 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS--------YRLHGLIGTNMIMNSIFGLERI--------   66 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT--------CBEEEEEEHHHHHHHHBCSSSB--------
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc--------cccccEEEcchhHHHhhccccc--------
Confidence            445552227789999999999999999999999999999988        8999999999999887643210        


Q ss_pred             chhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCC
Q 014353          135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKM  214 (426)
Q Consensus       135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~  214 (426)
                                                           ........++.++|..    ++.++.+++++.+++..|.+++ 
T Consensus        67 -------------------------------------~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~~~~~~~~~~-  104 (132)
T d1yava3          67 -------------------------------------EFEKLDQITVEEVMLT----DIPRLHINDPIMKGFGMVINNG-  104 (132)
T ss_dssp             -------------------------------------CGGGTTTSBHHHHSBC----SCCEEETTSBHHHHHHHTTTCS-
T ss_pred             -------------------------------------cccccccccccccccc----cccccccchhHHHHHHHHHhCC-
Confidence                                                 0122345688999987    8899999999999999998764 


Q ss_pred             cEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          215 KSIPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       215 ~~ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                       .+||+| ++|+++|+||.+|+++++.++
T Consensus       105 -~l~Vvd-~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3         105 -FVCVEN-DEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             -EEEEEC-TTCBEEEEEEHHHHHHHHHHH
T ss_pred             -EEEEEc-cCCEEEEEEEHHHHHHHHHhh
Confidence             599999 589999999999999998653

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.73  E-value=1.7e-17  Score=135.52  Aligned_cols=114  Identities=18%  Similarity=0.319  Sum_probs=99.4

Q ss_pred             CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353           64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN  143 (426)
Q Consensus        64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (426)
                      ++++++++++|+.+|+++|.++++.++||+| +        ++++|+||..||++.+....                   
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~--------~~~vGiit~~Di~~~~~~~~-------------------   64 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D--------EKLVGILTERDFSRKSYLLD-------------------   64 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T--------TEEEEEEEHHHHHHHGGGSS-------------------
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-C--------CeEEEEEEccchhhhhhhhc-------------------
Confidence            5889999999999999999999999999998 4        79999999999987644221                   


Q ss_pred             cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353          144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG  223 (426)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~  223 (426)
                                                    ......++.++|..    ++.++.+++++.+++..|.+++++++||+|  
T Consensus        65 ------------------------------~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--  108 (127)
T d2rc3a1          65 ------------------------------KPVKDTQVKEIMTR----QVAYVDLNNTNEDCMALITEMRVRHLPVLD--  108 (127)
T ss_dssp             ------------------------------SCGGGSBGGGTSBC----SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--
T ss_pred             ------------------------------ccccceeEeeeccc----eeEEeccCccHHHHHHHHHHCCCcEEEEEE--
Confidence                                          01224578889987    889999999999999999999999999999  


Q ss_pred             CCeEEEEEeHHHHHHHHH
Q 014353          224 EGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       224 ~~~l~Giis~~Dl~~~l~  241 (426)
                      +|+++|+||..|+++++.
T Consensus       109 ~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1         109 DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             TTEEEEEEEHHHHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHHh
Confidence            589999999999998763

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.73  E-value=1.7e-17  Score=140.86  Aligned_cols=150  Identities=12%  Similarity=0.138  Sum_probs=111.8

Q ss_pred             cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      .++++++  |+++++++++++|+.+|+++|.+++++++||+|++..      +.++|+++..|++.++..........  
T Consensus        10 ~~~V~di--M~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~------~~lvg~is~~dl~~~l~~~~~~~~~~--   79 (160)
T d2d4za3          10 NIQVGDI--MVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDT------NTLLGSIDRTEVEGLLQRRISAYRRQ--   79 (160)
T ss_dssp             SCBTTSS--SBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTT------CBEEEEEEHHHHHHHHHHHHHTTSSS--
T ss_pred             ceEHHHh--cCCCCeEECCCCcHHHHHHHHHhcCCCcccccccccc------ccccccchHHHHHHHHhhcccccccc--
Confidence            6788888  9999999999999999999999999999999996421      78999999999999887543211100  


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY  212 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~  212 (426)
                                          ....   .....................+.++|..    +++++.+++++.+++.+|.++
T Consensus        80 --------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~tv~~~~~l~~~~~~m~~~  132 (160)
T d2d4za3          80 --------------------PFEE---MLTLEEIYRWEQREKNVVVNFETCRIDQ----SPFQLVEGTSLQKTHTLFSLL  132 (160)
T ss_dssp             --------------------CCCS---CCBHHHHHHHHHHHTTCBCCTTSSCEEC----CSCCBCTTCBHHHHHHHHHHH
T ss_pred             --------------------chhh---ccccchhhhhhhhhcccccceeeecccC----CCEEEcCCCCHHHHHHHHHHc
Confidence                                0000   0000000000001112233456678887    889999999999999999999


Q ss_pred             CCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353          213 KMKSIPVVDLGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~  241 (426)
                      +++++||++  +|+++|+||++|+++++.
T Consensus       133 ~v~~l~V~d--~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         133 GLDRAYVTS--MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             TCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             CCeEEEEEE--CCEEEEEEEHHHHHHHhC
Confidence            999999998  589999999999999864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.72  E-value=1.6e-17  Score=136.33  Aligned_cols=116  Identities=17%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEe--CCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353          264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVE--KGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY  341 (426)
Q Consensus       264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd--~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  341 (426)
                      +|+++ ++++++++++.+|++.|.+++++++||++  .++ +++|+++..|+++.+..+....                 
T Consensus         6 im~~~-~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~-~~iGi~~~~dl~~~~~~~~~~~-----------------   66 (131)
T d2riha1           6 LLKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPK-RPVAVVSERDILRAVAQRLDLD-----------------   66 (131)
T ss_dssp             GCCSC-CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEE-EEEEEEEHHHHHHHHHTTCCTT-----------------
T ss_pred             hccCC-CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCC-EEEEEEeeeccccccccccccc-----------------
Confidence            88875 89999999999999999999999999995  445 8999999999999876543211                 


Q ss_pred             hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353          342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV  403 (426)
Q Consensus       342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~  403 (426)
                           .....+..++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++++.
T Consensus        67 -----~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          67 -----GPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             -----SBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             -----cccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence                 112234457889999999999999999999999999999999999999999998754

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.7e-17  Score=137.90  Aligned_cols=133  Identities=17%  Similarity=0.205  Sum_probs=101.0

Q ss_pred             cCCccCC-CCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCC
Q 014353           53 SIPVEAF-PPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRS  131 (426)
Q Consensus        53 ~~~~~~~-~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~  131 (426)
                      ..|+.++ ..++++++++++++|+.+|+++|.++++.++||+|++        ++++|++|..|+++++........   
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~--------~~~vG~it~~Di~~~~~~~~~~~~---   73 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN--------GYLINVYEAYDVLGLIKGGIYNDL---   73 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHTC----C---
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--------CeEcceehhhHHHHHHhhcccccc---
Confidence            3556655 3468899999999999999999999999999999988        899999999999988764321100   


Q ss_pred             CCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhh
Q 014353          132 SSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSK  211 (426)
Q Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~  211 (426)
                                             .                 ............+..    +++++.+++++.++++.|.+
T Consensus        74 -----------------------~-----------------~~~~~~~~~~~~~~~----~~~~v~~~~~l~~~~~~~~~  109 (140)
T d2nyca1          74 -----------------------S-----------------LSVGEALMRRSDDFE----GVYTCTKNDKLSTIMDNIRK  109 (140)
T ss_dssp             -----------------------C-----------------SBHHHHHHHCC----------CEECTTSBHHHHHHHHHH
T ss_pred             -----------------------c-----------------cchhhhhhhhhhccc----ccEEECCCCcHHHHHHHHHh
Confidence                                   0                 000000011112222    67889999999999999999


Q ss_pred             cCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353          212 YKMKSIPVVDLGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       212 ~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~  241 (426)
                      ++++++||+| ++|+++|+||.+|+++++.
T Consensus       110 ~~~~~l~VVd-~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         110 ARVHRFFVVD-DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             HTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             cCeeEEEEEe-CCCeEEEEEEHHHHHHHHh
Confidence            9999999999 5899999999999999875

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=4.1e-17  Score=137.63  Aligned_cols=131  Identities=11%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             CCccCCCC-CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353           54 IPVEAFPP-PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS  132 (426)
Q Consensus        54 ~~~~~~~~-~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~  132 (426)
                      +|++++.- ...+++++++++|+.+|+++|.++++.++||+|++        ++++|+++..||++++.....       
T Consensus         1 ~pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--------~~~vG~it~~Dl~~~~~~~~~-------   65 (153)
T d2ooxe2           1 VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE--------GTLLNVYESVDVMHLIQDGDY-------   65 (153)
T ss_dssp             CBGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG--------GBEEEEEEHHHHHHHHGGGCG-------
T ss_pred             CCHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc--------ceEEEEEEeeeeeehhccccc-------
Confidence            46666632 36789999999999999999999999999999998        899999999999887654310       


Q ss_pred             CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccc--cccCCcEEecCCCCHHHHHHHHh
Q 014353          133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGS--FRWAPFLALQKSNSFLTMLLLLS  210 (426)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~--~~~~~~~~v~~~~~l~~~l~~l~  210 (426)
                                                                .....++.++|..  ....+++++.+++++.+++..|.
T Consensus        66 ------------------------------------------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~  103 (153)
T d2ooxe2          66 ------------------------------------------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIK  103 (153)
T ss_dssp             ------------------------------------------GGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHH
T ss_pred             ------------------------------------------cccccchhhheeeeecccCCCeEECCCCcHHHHHHhhh
Confidence                                                      0112234444421  11237788999999999999999


Q ss_pred             hcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          211 KYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       211 ~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      +++++++||+| ++|+++|++|+.|+++++..
T Consensus       104 ~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2         104 HSRVHRLFVVD-ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             HSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             hceeeEEEEEc-CCCEEEEEEEHHHHHHHHHc
Confidence            99999999999 58999999999999999853

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.70  E-value=4.1e-17  Score=133.12  Aligned_cols=112  Identities=17%  Similarity=0.355  Sum_probs=100.8

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHC-----CcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCch
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQH-----RILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSS  136 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~-----~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~  136 (426)
                      |+++++++++++|+.+|++.|+++     ++..+||+|++        ++++|+++..+++..                 
T Consensus         7 M~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~--------~~l~G~v~~~~l~~~-----------------   61 (127)
T d2ouxa2           7 MTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE--------NHLVGVISLRDLIVN-----------------   61 (127)
T ss_dssp             CBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT--------CBEEEEEEHHHHTTS-----------------
T ss_pred             CCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC--------CeEEEEEEeeccccc-----------------
Confidence            889999999999999999999988     47899999998        999999999998521                 


Q ss_pred             hHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcE
Q 014353          137 ALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKS  216 (426)
Q Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~  216 (426)
                                                             ....++.++|.+    +++++.+++++.+++..|.++++++
T Consensus        62 ---------------------------------------~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~~~~   98 (127)
T d2ouxa2          62 ---------------------------------------DDDTLIADILNE----RVISVHVGDDQEDVAQTIRDYDFLA   98 (127)
T ss_dssp             ---------------------------------------CTTSBHHHHSBS----CCCCEETTSBHHHHHHHHHHHTCSE
T ss_pred             ---------------------------------------cccEEhhhhccC----CCccCCCCCCHHHHHHHHHHhCCEE
Confidence                                                   123579999997    8889999999999999999999999


Q ss_pred             eEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353          217 IPVVDLGEGTIDNIITQSSVIHMLAE  242 (426)
Q Consensus       217 ipVvd~~~~~l~Giis~~Dl~~~l~~  242 (426)
                      +||+| ++|+++|+||..|++.++.+
T Consensus        99 lPVVD-~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          99 VPVTD-YDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             EEEEe-CCCEEEEEEEHHHHHHHHHH
Confidence            99999 58999999999999998854

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.70  E-value=2.4e-17  Score=134.42  Aligned_cols=116  Identities=16%  Similarity=0.273  Sum_probs=94.7

Q ss_pred             CCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHH
Q 014353           61 PPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAA  140 (426)
Q Consensus        61 ~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~  140 (426)
                      +|..+++++++++|+.+|+++|.++++.++||+|+...      ++++|+||..||.......                 
T Consensus         2 gmi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~------~~lvGivt~~Di~~~~~~~-----------------   58 (126)
T d1zfja4           2 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN------RKLVGIITNRDMRFISDYN-----------------   58 (126)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT------CBEEEEEEHHHHHHCSCSS-----------------
T ss_pred             CCEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccC------CeEEEEeEHHHHHHhhccC-----------------
Confidence            46667889999999999999999999999999997211      8999999999996421100                 


Q ss_pred             hhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEE
Q 014353          141 AVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVV  220 (426)
Q Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVv  220 (426)
                                                           ......++..    +++++.+++++.+++..|.+++++++||+
T Consensus        59 -------------------------------------~~~~~~~~~~----~~~~~~~~~~l~~a~~~m~~~~~~~lpVV   97 (126)
T d1zfja4          59 -------------------------------------APISEHMTSE----HLVTAAVGTDLETAERILHEHRIEKLPLV   97 (126)
T ss_dssp             -------------------------------------SBTTTSCCCS----CCCCEETTCCHHHHHHHHHHTTCSEEEEE
T ss_pred             -------------------------------------Cceeeeeecc----ceeecCCCCCHHHHHHHHHhcCCcEEEEE
Confidence                                                 0011223343    77889999999999999999999999999


Q ss_pred             eCCCCeEEEEEeHHHHHHHHH
Q 014353          221 DLGEGTIDNIITQSSVIHMLA  241 (426)
Q Consensus       221 d~~~~~l~Giis~~Dl~~~l~  241 (426)
                      | ++|+++|+||..|+++++.
T Consensus        98 d-~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          98 D-NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             C-TTSBEEEEEEHHHHHHHHH
T ss_pred             c-CCCeEEEEEEHHHHHHHhh
Confidence            9 4899999999999999875

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=2.2e-17  Score=133.75  Aligned_cols=116  Identities=26%  Similarity=0.361  Sum_probs=86.4

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      +++++|.+    +++++.+++++.++++.|.+++++++||+| ++|+++|++|..|++....            ..++.+
T Consensus         2 ~v~diM~~----~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd-~~~~~~G~it~~dl~~~~~------------~~~~~~   64 (122)
T d2yzqa2           2 RVKTIMTQ----NPVTITLPATRNYALELFKKYKVRSFPVVN-KEGKLVGIISVKRILVNPD------------EEQLAM   64 (122)
T ss_dssp             BHHHHSEE----SCCCEESSCC------------CCEEEEEC-TTCCEEEEEESSCC----------------------C
T ss_pred             CcccccCC----CCEEECCcCcHHHHHHHHHHcCCcEEEEEe-ccccchhhhhcchhhhhhc------------ccchhh
Confidence            57889987    788999999999999999999999999999 4899999999999876533            234555


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                          +|.++ ++++.+++++.+++++|.+++++++||+|++| +++|+||.+||++.+.
T Consensus        65 ----~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~-~liGiit~~dil~~~~  117 (122)
T d2yzqa2          65 ----LVKRD-VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG-KPVGILTVGDIIRRYF  117 (122)
T ss_dssp             ----CCBSC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTT
T ss_pred             ----ccccc-eeecchhhHHHHHHHHHHHcCcEEEEEEeCCC-EEEEEEEHHHHHHHHH
Confidence                77765 89999999999999999999999999999988 9999999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=9.3e-19  Score=141.61  Aligned_cols=111  Identities=26%  Similarity=0.360  Sum_probs=59.1

Q ss_pred             eeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353          270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH  346 (426)
Q Consensus       270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  346 (426)
                      ++++.+++++.+|+++|.+++++++||+|+   ++ +++|+||.+|+......             ++..+....+    
T Consensus         6 pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~-~lvGivT~~Di~~~~~~-------------~~~~~~~~~~----   67 (120)
T d1jr1a4           6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS-RLVGIISSRDIDFLKEE-------------EHDRFLEEIM----   67 (120)
T ss_dssp             TCC----CCCC--CCBC---------------CTT-CCC-----------------------------------CC----
T ss_pred             CEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC-eEeeeeeeeeeeehhcc-------------ccCceeEEEE----
Confidence            789999999999999999999999999985   45 89999999998644221             1112222222    


Q ss_pred             CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353          347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL  402 (426)
Q Consensus       347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l  402 (426)
                          .+..+++++++++++.+|+++|.+++++++||||++|+++|+||++||++..
T Consensus        68 ----~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          68 ----TKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             ----SBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             ----eeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence                2344789999999999999999999999999999999999999999999863

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=5.6e-17  Score=135.29  Aligned_cols=113  Identities=21%  Similarity=0.363  Sum_probs=100.6

Q ss_pred             CCCceEEEeCCCCHHHHHHHHHHCC-----cccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCch
Q 014353           62 PPSQVIEIKSDTSLAEAVEILAQHR-----ILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSS  136 (426)
Q Consensus        62 ~~~~vi~v~~~~sl~~A~~~l~~~~-----i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~  136 (426)
                      |+++++++++++|+.+|++.|++++     +..+||+|++        ++++|+++..|+...                 
T Consensus         7 M~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~--------~~l~G~v~~~dl~~~-----------------   61 (144)
T d2yvxa2           7 MTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK--------GRLKGVLSLRDLIVA-----------------   61 (144)
T ss_dssp             CBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT--------CBBCCBCBHHHHTTS-----------------
T ss_pred             cCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC--------CCEecccchhhhhhc-----------------
Confidence            8999999999999999999998884     8899999999        999999999998521                 


Q ss_pred             hHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcE
Q 014353          137 ALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKS  216 (426)
Q Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~  216 (426)
                                                             ....++.++|..    ++.++.+++++.+++..|.++++++
T Consensus        62 ---------------------------------------~~~~~v~~im~~----~~~~v~~~~~~~~a~~~m~~~~~~~   98 (144)
T d2yvxa2          62 ---------------------------------------DPRTRVAEIMNP----KVVYVRTDTDQEEVARLMADYDFTV   98 (144)
T ss_dssp             ---------------------------------------CTTCBSTTTSBS----SCCCEESSCCHHHHHHHHHHSCCSE
T ss_pred             ---------------------------------------ccccchHHhccc----CCccCCCCChHHHHHHHHHHcCCCE
Confidence                                                   113467788887    8889999999999999999999999


Q ss_pred             eEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353          217 IPVVDLGEGTIDNIITQSSVIHMLAEC  243 (426)
Q Consensus       217 ipVvd~~~~~l~Giis~~Dl~~~l~~~  243 (426)
                      +||+| ++|+++|+||..|+++++.+.
T Consensus        99 lPVVd-~~g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2          99 LPVVD-EEGRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             EEEEC-SSCBEEEEEEHHHHHHHHHHH
T ss_pred             EEEEe-ECCEEEEEEEHHHHHHHHHHH
Confidence            99999 479999999999999988643

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=1.8e-16  Score=130.70  Aligned_cols=126  Identities=17%  Similarity=0.281  Sum_probs=106.1

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcc----hhhhhccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLE----WFESWGKK  255 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~----~~~~~~~~  255 (426)
                      +|+++|.+    .+.++.+++++.+|++.|.+++++++||+|   ++++|+++..|++.++.......    ....+...
T Consensus         2 ~V~~lM~~----~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           2 NIETLMIK----NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SGGGTCEE----SCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             EeeEEeeC----CCeEECCCCcHHHHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            57889987    777899999999999999999999999987   36999999999998874332211    11123455


Q ss_pred             cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                      ++++    +|+.+ ++++.+++++.+|+++|.+++++++||+|++| +++|+||.+|+++++.
T Consensus        75 ~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g-~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          75 PIID----YMTPN-PVTVYNTSDEFTAINIMVTRNFGSLPVVDIND-KPVGIVTEREFLLLYK  131 (135)
T ss_dssp             BGGG----TSEES-CCCEETTSCHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHGGGGG
T ss_pred             CHHH----HhCCc-cceEEeccccchhhhhhhhcceeEEEEEeCCC-EEEEEEEHHHHHHHHH
Confidence            6777    78875 99999999999999999999999999999988 9999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=3e-16  Score=126.74  Aligned_cols=116  Identities=20%  Similarity=0.272  Sum_probs=102.7

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE  259 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~  259 (426)
                      +++++|.+    .+.++.+++++.+++..|.+++.+++||+| ++++++|+++..|++++..            ..++.+
T Consensus         2 ~v~~~m~~----~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd-~~~~~~Gii~~~dl~~~~~------------~~~v~~   64 (121)
T d1vr9a3           2 KVKKWVTQ----DFPMVEESATVRECLHRMRQYQTNECIVKD-REGHFRGVVNKEDLLDLDL------------DSSVFN   64 (121)
T ss_dssp             BGGGGCBS----CSCEEETTCBHHHHHHHHHHTTSSEEEEEC-TTSBEEEEEEGGGGTTSCT------------TSBSGG
T ss_pred             CchhhhcC----CCeEECCCCCHHHHHHhhhhcCcEEEEEEe-CCceeEEEeehhhhhhhhc------------cccccc
Confidence            46788887    889999999999999999999999999999 5899999999999864321            346666


Q ss_pred             cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353          260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT  318 (426)
Q Consensus       260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~  318 (426)
                          +|..+ ++++++++++.++++.|.++++..+||+|++| +++|+||..|+++++.
T Consensus        65 ----~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g-~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          65 ----KVSLP-DFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALI  117 (121)
T ss_dssp             ----GCBCT-TCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred             ----cccCc-cEEECCCCCHHHHHHHHHhcCceeeeeECCCC-eEEEEEEHHHHHHHHH
Confidence                67664 88999999999999999999999999999998 9999999999999864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.65  E-value=6.3e-16  Score=126.64  Aligned_cols=120  Identities=20%  Similarity=0.318  Sum_probs=101.8

Q ss_pred             chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC-CCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccc
Q 014353          180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL-GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLS  258 (426)
Q Consensus       180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~-~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~  258 (426)
                      +|+++|.+    +++++.+++++.++++.|.+++++++||++. ++++++|+++..|+.+.+.......        ...
T Consensus         2 ~V~dim~~----~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~--------~~~   69 (131)
T d2riha1           2 RTSELLKR----PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD--------GPA   69 (131)
T ss_dssp             BGGGGCCS----CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT--------SBS
T ss_pred             CHHHhccC----CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc--------ccc
Confidence            58899987    8899999999999999999999999999953 2578999999999999886543211        112


Q ss_pred             ccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353          259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL  317 (426)
Q Consensus       259 ~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~  317 (426)
                      .    .+... ++++.+++++.+++++|.+++++++||+|++| +++|+||..||++..
T Consensus        70 ~----~~~~~-~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g-~l~Giit~~Dll~~~  122 (131)
T d2riha1          70 M----PIANS-PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFER  122 (131)
T ss_dssp             G----GGCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCH
T ss_pred             c----ccccc-ceeEeeecchHHHHHHHHHCCeEEEEEEcCCC-eEEEEEEHHHHHHHH
Confidence            2    23333 78999999999999999999999999999988 999999999998874

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=5.9e-16  Score=129.13  Aligned_cols=136  Identities=17%  Similarity=0.241  Sum_probs=105.8

Q ss_pred             cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353          175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK  254 (426)
Q Consensus       175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~  254 (426)
                      .+...++++++-.. +.+++++.+++++.+|+..|.+++++++||+| ++++++|++|..|++..+........     .
T Consensus         5 ~f~~~~l~~l~i~~-~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd-~~~~~~Gvit~~di~~~l~~~~~~~~-----~   77 (145)
T d2v8qe1           5 EFMSKSLEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAAEKTYNNL-----D   77 (145)
T ss_dssp             GGGGSBHHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGGSSCCCCC-----S
T ss_pred             HHhhCCHHHHcCCC-CCCceEEcCcCcHHHHHHHHHHcCCCcccccc-cCCceEEEEEcchhhhhhhcccccch-----h
Confidence            34455677765321 23688999999999999999999999999999 58999999999999887754321110     1


Q ss_pred             ccccccc--cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353          255 KKLSEIG--LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA  319 (426)
Q Consensus       255 ~~v~~~~--~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~  319 (426)
                      .++.+..  ...|..+ ++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++++..
T Consensus        78 ~~v~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          78 VSVTKALQHRSHYFEG-VLKCYLHETLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALVL  142 (145)
T ss_dssp             SBHHHHGGGCCSCCCS-CCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHS
T ss_pred             hhhhhccchhhhccCC-CeEECCCCcHHHHHHHHHHcCceEEEEEccCC-EEEEEEEHHHHHHHHHh
Confidence            1111110  0145544 88999999999999999999999999999988 99999999999999753

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.64  E-value=1.2e-17  Score=135.02  Aligned_cols=118  Identities=14%  Similarity=0.218  Sum_probs=59.6

Q ss_pred             CCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHH
Q 014353           61 PPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAA  140 (426)
Q Consensus        61 ~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~  140 (426)
                      +|.++++++++++|+.+|+++|.++++.++||+|+....     ++++||||.+|+........                
T Consensus         1 gm~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~-----~~lvGivT~~Di~~~~~~~~----------------   59 (120)
T d1jr1a4           1 GFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMG-----SRLVGIISSRDIDFLKEEEH----------------   59 (120)
T ss_dssp             SEECTTCC----CCCC--CCBC---------------CT-----TCCC--------------------------------
T ss_pred             CcccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccC-----CeEeeeeeeeeeeehhcccc----------------
Confidence            355677899999999999999999999999999963211     79999999999853211100                


Q ss_pred             hhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEE
Q 014353          141 AVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVV  220 (426)
Q Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVv  220 (426)
                                                           ..++..++..  ..+++++.+++++.+++.+|.+++++++||+
T Consensus        60 -------------------------------------~~~~~~~~~~--~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVV  100 (120)
T d1jr1a4          60 -------------------------------------DRFLEEIMTK--REDLVVAPAGITLKEANEILQRSKKGKLPIV  100 (120)
T ss_dssp             -------------------------------------------CCSB--TTTSCCEETTCCHHHHHHHTCSCC---CEEE
T ss_pred             -------------------------------------CceeEEEEee--ccCceEECCCCCHHHHHHHHHHcCccEEEEE
Confidence                                                 1112222211  1167889999999999999999999999999


Q ss_pred             eCCCCeEEEEEeHHHHHHH
Q 014353          221 DLGEGTIDNIITQSSVIHM  239 (426)
Q Consensus       221 d~~~~~l~Giis~~Dl~~~  239 (426)
                      | ++++++|+||.+|+++.
T Consensus       101 d-~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4         101 N-ENDELVAIIARTDLKKN  118 (120)
T ss_dssp             E-TTTEEEEEECHHHHHHH
T ss_pred             c-CCCEEEEEEEHHHhhhc
Confidence            9 58999999999999875

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.2e-15  Score=128.00  Aligned_cols=139  Identities=14%  Similarity=0.173  Sum_probs=101.7

Q ss_pred             EEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCc
Q 014353           67 IEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMS  146 (426)
Q Consensus        67 i~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~  146 (426)
                      +.+.+++|+.+|+++|.+++++++||++++..      ++++|+||..||+.++............          ..  
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~------~~lvG~is~~dl~~~l~~~~~~~~~~~~----------~~--   81 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRES------QRLVGFVLRRDLIISIENARKKQDGVVS----------TS--   81 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTT------CBEEEEEEHHHHHHHHHHHHTSCSCCCT----------TC--
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCC------CeEEEEEEhHHHHHHHhccccccccccc----------ch--
Confidence            55778899999999999999999999954321      7999999999999988654322111000          00  


Q ss_pred             cccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCe
Q 014353          147 KAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGT  226 (426)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~  226 (426)
                          ...+.       ....   ..........++.++|.+    ++.++.+++++.+++++|.+++++++||++  +|+
T Consensus        82 ----~~~~~-------~~~~---~~~~~~~~~~~v~~im~~----~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~  141 (169)
T d2j9la1          82 ----IIYFT-------EHSP---PLPPYTPPTLKLRNILDL----SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGR  141 (169)
T ss_dssp             ----EEECS-------SSCC---CCCTTCCCCEECGGGEES----SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTE
T ss_pred             ----hhhhc-------ccch---hhhhccccccchhhhccC----CCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCE
Confidence                00000       0000   001112335578999987    788999999999999999999999999988  689


Q ss_pred             EEEEEeHHHHHHHHHhc
Q 014353          227 IDNIITQSSVIHMLAEC  243 (426)
Q Consensus       227 l~Giis~~Dl~~~l~~~  243 (426)
                      ++|+||++|+++++.+.
T Consensus       142 lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1         142 LLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             EEEEEEHHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHHH
Confidence            99999999999999654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2e-14  Score=122.87  Aligned_cols=134  Identities=17%  Similarity=0.182  Sum_probs=102.9

Q ss_pred             cchhhhccccccCCcEE--ecCCCCHHHHHHHHhhcCCcEeEEEe-CCCCeEEEEEeHHHHHHHHHhccCcchh------
Q 014353          179 TKVRDIAGSFRWAPFLA--LQKSNSFLTMLLLLSKYKMKSIPVVD-LGEGTIDNIITQSSVIHMLAECAGLEWF------  249 (426)
Q Consensus       179 ~~v~~i~~~~~~~~~~~--v~~~~~l~~~l~~l~~~~~~~ipVvd-~~~~~l~Giis~~Dl~~~l~~~~~~~~~------  249 (426)
                      +.++|+|.+..+.+..+  +.++.++.+++.+|.+++++++||++ .++++++|++|.+|++.++.........      
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            35778887655445433  45677999999999999999999994 2467899999999999988533111100      


Q ss_pred             ------------hhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353          250 ------------ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL  317 (426)
Q Consensus       250 ------------~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~  317 (426)
                                  ......++++    +|.++ ++++.+++++.+++++|.+++++++||+| +| +++|+||++||++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~----im~~~-~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g-~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRN----ILDLS-PFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG-RLLGIITKKDVLKHI  155 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGG----GEESS-CCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHH
T ss_pred             hhhcccchhhhhccccccchhh----hccCC-CEEECCCCcHHHHHHHHHhcCceEEEEEE-CC-EEEEEEEHHHHHHHH
Confidence                        0011223344    78775 89999999999999999999999999987 46 999999999999987


Q ss_pred             hC
Q 014353          318 TA  319 (426)
Q Consensus       318 ~~  319 (426)
                      ..
T Consensus       156 ~~  157 (169)
T d2j9la1         156 AQ  157 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            53