Citrus Sinensis ID: 014366
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 426 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LZB8 | 634 | ABC transporter B family | yes | no | 1.0 | 0.671 | 0.678 | 1e-168 | |
| Q2LVL0 | 601 | Lipid A export ATP-bindin | yes | no | 0.927 | 0.657 | 0.383 | 2e-71 | |
| P71082 | 580 | Putative multidrug export | yes | no | 0.948 | 0.696 | 0.345 | 4e-65 | |
| Q1QX69 | 579 | Lipid A export ATP-bindin | yes | no | 0.934 | 0.687 | 0.354 | 4e-65 | |
| Q6AJW3 | 572 | Lipid A export ATP-bindin | yes | no | 0.910 | 0.678 | 0.352 | 5e-65 | |
| Q9KQW9 | 582 | Lipid A export ATP-bindin | yes | no | 0.946 | 0.692 | 0.356 | 8e-65 | |
| Q9JI39 | 715 | ATP-binding cassette sub- | yes | no | 0.920 | 0.548 | 0.374 | 5e-64 | |
| Q9HUG8 | 603 | Lipid A export ATP-bindin | yes | no | 0.955 | 0.674 | 0.351 | 1e-63 | |
| Q2YU20 | 578 | Putative multidrug export | yes | no | 0.929 | 0.685 | 0.355 | 2e-63 | |
| O06967 | 589 | Multidrug resistance ABC | no | no | 0.896 | 0.648 | 0.371 | 3e-63 |
| >sp|Q9LZB8|AB29B_ARATH ABC transporter B family member 29, chloroplastic OS=Arabidopsis thaliana GN=ABCB29 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/426 (67%), Positives = 365/426 (85%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+IAYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 209 MTAHMIVASPALTLVSAMVIPSVALLIAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 268
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNAE+ ES RF+R A +DL E KK+KMK+LIPQ VQ++Y G+L I C G+++++G
Sbjct: 269 FVKANNAEISESVRFQRFARADLDERFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 328
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
S ++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 329 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 388
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 389 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 448
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I++D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 449 PSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 508
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQ SS+LILDEATSALDS
Sbjct: 509 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQKSSILILDEATSALDS 568
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
SELLVR+A++R++ HTV+VIAH LETVMMA+RVFL++ GKL+ELNRS+LL ++ DSL
Sbjct: 569 LSELLVREALERVMQDHTVIVIAHRLETVMMAQRVFLVERGKLKELNRSSLLSTHKDSLT 628
Query: 421 SAGLVI 426
SAGLVI
Sbjct: 629 SAGLVI 634
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2LVL0|MSBA_SYNAS Lipid A export ATP-binding/permease protein MsbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/407 (38%), Positives = 243/407 (59%), Gaps = 12/407 (2%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L++I+ +V P IA G+++R ++ ++ +++ SL+ L E + V+A E E
Sbjct: 175 LAIIAMIVFPLTIYPIAKFGQKMRSVATRTQVTMGSLTTLLQETISGTRIVRAFCMEAHE 234
Query: 72 SARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFG----ALFILCGGSLLVSGGSFDGCS 127
+ RF R + LK + AL ++ + G A I GG ++ G S G +
Sbjct: 235 NQRFARENEKLMHLALKSVSINALSSPFME--FLGGIGIAAIIFYGGYQVIKGSSTPG-T 291
Query: 128 LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD 187
SF+T+L+ + EP++ + N +QG +R+F + ++++ +AV L I+
Sbjct: 292 FFSFLTALIMLYEPVKRLTNVNNTIQQGIAGAQRVFSIIDLVPDIVDRDEAVELPRISEK 351
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ NISF Y D+ P VL +NL IRAGE VA +G SGGGK+TL L+ R YD +G IL
Sbjct: 352 IEIRNISFAY-DDTP-VLRNINLTIRAGEVVAFVGMSGGGKTTLVNLIPRFYDVTAGQIL 409
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D HD++++ L SLRR +G+V+Q LF+ TV NI Y + + AR ANA
Sbjct: 410 IDGHDIRDVSLISLRRQIGIVTQQTILFNDTVRNNIAYGS--QGCSEKEIIEAARAANAH 467
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
+F+ LP+GY+T IG G+ LSGG+RQR++IARAL +N+ +LILDEATS+LD+ +E+ V+
Sbjct: 468 DFIVNLPEGYDTVIGELGTKLSGGERQRISIARALLKNAPILILDEATSSLDTEAEMEVQ 527
Query: 368 QAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL-EELNRSTLLG 413
+A++RL+ T LVIAH L T+ A R+ +L G++ EE TLL
Sbjct: 528 EALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVEEGAHETLLA 574
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Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Syntrophus aciditrophicus (strain SB) (taxid: 56780) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P71082|YGAD_BACSU Putative multidrug export ATP-binding/permease protein YgaD OS=Bacillus subtilis (strain 168) GN=ygaD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 237/420 (56%), Gaps = 16/420 (3%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
ML + L+LIS ++ P + + Y RLRK++++ ++A + +L+E + + +++
Sbjct: 157 MLTLDVKLTLISIVLFPLYGISVKYFYGRLRKLTRERSQALAQVQGHLHERIQGMPVIRS 216
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGA--LFILCGGSLLVSGGS 122
E E A+F L + ++ A V I A + I C G +++G
Sbjct: 217 FAIEDHEQAQFNEKNGHFLDKAIRHTNWNAKTFAVVNTITDLAPLIVIACAGYFVINGPL 276
Query: 123 FDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLD 182
G ++V+F+ + M P++ + + Q +++R+F+ ++ +KP+A+ D
Sbjct: 277 TVG-TMVAFVGYIDRMYNPVRRLINSSTTLTQSIASMDRVFEFIDEPYELTDKPNAIKAD 335
Query: 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
I G V+F N+SF+Y + +L ++L + GETVAL+G SGGGKSTL L+ R YD
Sbjct: 336 QIRGGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFYDVT 395
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID--MERVEHT 300
SG +L+D D+++ SLR VG+V QD LFS T+ ENI + K D +E +
Sbjct: 396 SGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIA----IGKPDATLEEIIEA 451
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANA EF+ + P+GY T +G RG LSGGQ+QR++IAR +N +LILDEATSALD
Sbjct: 452 AKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDL 511
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
SE +++A+D+L T V+AH L T+ A ++ +++NG + E+ HD L+
Sbjct: 512 ESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEI-------GTHDELM 564
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May be involved in multidrug export. Transmembrane domains (TMD) form a pore in the cell membrane and the ATP-binding domain (NBD) is responsible for energy generation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1QX69|MSBA_CHRSD Lipid A export ATP-binding/permease protein MsbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 235/409 (57%), Gaps = 11/409 (2%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ + +L + +L+LI V P + LV+ Y +R R++S++ S+ ++ +E L
Sbjct: 152 LVSYLLWTNWMLTLIFMAVTPLIGLVVNYTSKRFRRLSRRIQNSMGDVTHVASEALSGYR 211
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYF----GALFILCGGSL 116
V+ + AE E ARF + + + +K KA+ +QL+ G +++ +L
Sbjct: 212 VVRTHGAEAYEKARFAEASDYNREQSMKVALTKAVSTPVIQLLVALSLAGLVWLAMSPAL 271
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP 176
+ S V+FIT+ M +P++ + + + ++G A + LF L + +V E
Sbjct: 272 M---ASMTPGEFVAFITAASLMAKPVRQLTEVNSTIQKGLSASQELFGLLEQPPEVDEGS 328
Query: 177 DAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
+ I+G V+F + F+Y ++ VL ++L + GE +A++G SG GKSTL L+
Sbjct: 329 YVPA--RIDGRVRFEGVRFRYGEDQAEVLKGIDLDVPQGEMIAIVGRSGSGKSTLVSLMP 386
Query: 237 RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296
R Y P G +L+DD D+Q L LR+ + LVSQ +TLF+ T+A NI Y D E
Sbjct: 387 RFYRPTEGRVLLDDVDIQEYALSPLRQRIALVSQQVTLFNTTIAANIAYGH--PDADREA 444
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
VE AR+A A EF+ LP GY+T +G G LSGGQRQRLAIARA+++++ +L+LDEATS
Sbjct: 445 VESAARSAYAHEFIERLPNGYDTVVGDNGVMLSGGQRQRLAIARAIFKDAPLLVLDEATS 504
Query: 357 ALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
ALD+ SE ++QA++R+ T VIAH L T+ A R+ +++ G++ E
Sbjct: 505 ALDTESERYIQQALERVCRGRTTFVIAHRLSTIERADRILVMEQGEIIE 553
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Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q6AJW3|MSBA_DESPS Lipid A export ATP-binding/permease protein MsbA OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 231/397 (58%), Gaps = 9/397 (2%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI L+IP A+ I G+ RK+S ++ A +S L+E + VKA E E
Sbjct: 161 LALICFLIIPLAAIPIVKFGKIFRKLSTKTQEETAEVSNMLHETISGSRIVKAFCREDYE 220
Query: 72 SARFRRLAHSDLCELLKKRKMKALIPQTVQLI--YFGALFILCGGSLLVSGGSFDGCSLV 129
RF R + +K K + +++I + A I GGS +++G + G +
Sbjct: 221 VERFHRQVETLFTITMKNAKYRVFQSPLMEIIGGFAVAGIIWVGGSEVINGSATPG-TFF 279
Query: 130 SFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVK 189
+F+T+++ +P++ V + + +QG + +R+F + K ++ +KP+A SL ++
Sbjct: 280 AFLTAMITAYDPVKRVSQVNSTIQQGLASAQRVFAILDIKPEIEDKPEATSLAPFKESIE 339
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
F ++SF Y +L +NL + AGE +A++GPSGGGK+TL L+ R D G I +D
Sbjct: 340 FHDVSFSYGTEK--ILSHINLKVPAGEALAIVGPSGGGKTTLTNLIPRFIDLQEGSITID 397
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADE 308
D++++ +SLR + +V+Q LF+ T+ NI Y +D T+ E + A+ A+A
Sbjct: 398 GTDIRDVTTNSLRNQIAMVTQQTILFNDTIRNNIAYGKDSCTE---EEIRRAAKAAHALT 454
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
F+ LP G++T +G G+ LSGGQRQR++IARAL ++ +LILDEATSALD+ SE V++
Sbjct: 455 FIEELPNGFDTALGEGGAKLSGGQRQRISIARALLADAPILILDEATSALDTESEREVQK 514
Query: 369 AVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
A++ L+ + T VIAH L T+ A R+ ++ GK+ E
Sbjct: 515 ALENLMQNRTTFVIAHRLSTIKNASRIVVVKKGKIVE 551
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Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q9KQW9|MSBA_VIBCH Lipid A export ATP-binding/permease protein MsbA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=msbA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 145/407 (35%), Positives = 234/407 (57%), Gaps = 4/407 (0%)
Query: 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
T M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L V
Sbjct: 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
Query: 63 KANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF-ILCGGSLLVSGG 121
+ + E RF ++++S + +K +++ +Q+I ALF +L S+
Sbjct: 218 LSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRA 277
Query: 122 SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181
+ +++ ++ P++ + +EF++G A + LF L +++
Sbjct: 278 ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--RDNGKYEA 335
Query: 182 DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
+ +NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R YD
Sbjct: 336 ERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
SG I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E A
Sbjct: 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA-AEGEYTREQIEQAA 454
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
R A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSALD+
Sbjct: 455 RQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
Query: 362 SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408
SE ++ A+D L + TVLVIAH L T+ A + ++D G++ E R
Sbjct: 515 SERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561
|
Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 155/414 (37%), Positives = 237/414 (57%), Gaps = 22/414 (5%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M +SP L+ V+P ++++ G LRK+SK + S+A + E + I ++A
Sbjct: 272 MFFVSPSLATFVLSVVPPISVLAVIYGRYLRKLSKATQDSLAEATQLAEERIGNIRTIRA 331
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGA---------LFILCGGS 115
EM E ++ + +LL+ + +AL + +FGA L +L G
Sbjct: 332 FGKEMTEVEKY----TGRVDQLLQLAQKEAL----ARAGFFGAAGLSGNLIVLSVLYKGG 383
Query: 116 LLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK 175
LL+ L SF+ ++ I G+ Y+E +G A RL++L + + ++
Sbjct: 384 LLMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFYSELMKGLGAGGRLWELLERQPRLPFN 443
Query: 176 PDAVSLDH--INGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLA 232
+ + LD G ++F N+ F Y + V +L I +G AL+GPSG GKST+
Sbjct: 444 -EGMVLDEKTFQGALEFRNVHFTYPARPEVSVFQDFSLSIPSGSVTALVGPSGSGKSTVV 502
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTK 291
LLLRLYDP SG + +D HD++ + LR +G VSQ+ LFS +VAENI Y D ++
Sbjct: 503 SLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYGADNLSS 562
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
+ ++VE A ANA EF+R+ PQG++T +G +G LSGGQ+QR+AIARAL +N +L+L
Sbjct: 563 VTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGILLSGGQKQRIAIARALLKNPKILLL 622
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
DEATSALD+ +E LV++A+DRL+ TVL+IAH L T+ A V +LD+GK+ E
Sbjct: 623 DEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLSTIKNANFVAVLDHGKICE 676
|
May mediate critical mitochondrial transport functions related to heme biosynthesis. Mus musculus (taxid: 10090) |
| >sp|Q9HUG8|MSBA_PSEAE Lipid A export ATP-binding/permease protein MsbA OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/412 (35%), Positives = 239/412 (58%), Gaps = 5/412 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+L ++ L+L+ ++P +A+++ + RK SK+ +++ ++ +E + V++
Sbjct: 176 LLWMNWKLTLVMLAILPVIAVMVTTASRKFRKQSKKIQVAMGDVTHVASETIQGYRVVRS 235
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFD 124
E E RF + S+ + L+ K A+ +QL+ + A+ IL L + G +
Sbjct: 236 FGGEAYEEKRFLDASQSNTDKQLRMTKTGAVYTPMLQLVIYVAMAILMFLVLWLRGDASA 295
Query: 125 GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHI 184
G LV++IT+ + +PI+ + + + ++G E +F+ + E V + +
Sbjct: 296 G-DLVAYITAAGLLPKPIRQLSEVSSTVQRGVAGAESIFE--QLDEAAEEDQGTVEKERV 352
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+G ++ N+SF+Y VLD ++ G+ +AL+G SG GKSTLA L+ R Y G
Sbjct: 353 SGRLEVRNLSFRYPGTDKQVLDDISFIAEPGQMIALVGRSGSGKSTLANLVPRFYQHNDG 412
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
IL+D +V++ RL +LRRH+ LV+Q +TLF+ +VA NI Y DL E +E A+ A
Sbjct: 413 KILLDGVEVEDYRLRNLRRHIALVTQQVTLFNDSVANNIAYGDL-AGAPREEIERAAKAA 471
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
NA EF+ LPQG++T +G G LSGGQRQRLAIARAL +++ +LILDEATSALD+ SE
Sbjct: 472 NAKEFIDNLPQGFDTEVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESER 531
Query: 365 LVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL-EELNRSTLLGSN 415
++ A+D ++ T LVIAH L T+ A + ++D G++ E + + LL N
Sbjct: 532 HIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGSHAELLAQN 583
|
Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q2YU20|Y1799_STAAB Putative multidrug export ATP-binding/permease protein SAB1799c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1799c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 224/405 (55%), Gaps = 9/405 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + L+L + + P L + RLRK++++ ++A + +L+E + I VK+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSF 123
E E+ F + + L LK + A T+ + G + ++ G+ L GS
Sbjct: 216 FAIEDNEAKNFDKKNANFLTRALKHTRWNAYSFATINTVTDIGPIIVIGVGAYLAISGSI 275
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +F+ L + P++ + ++ Q +++R+F L + A ++
Sbjct: 276 TVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEI 335
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G + +++F+Y DN +L +NL I GETVA +G SGGGKSTL L+ R YD S
Sbjct: 336 KQGRIDIYHVNFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM---TKIDMERVEHT 300
G IL+D H++++ SLR +GLV QD LFS TV ENI L+ T D E VE
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI----LLGRPTATDEEVVE-V 450
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LILDEATSALD
Sbjct: 451 AKVANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
SE ++++A+D L T L++AH L T+ A ++ +++NG + E
Sbjct: 511 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555
|
May be involved in multidrug export. Transmembrane domains (TMD) form a pore in the cell membrane and the ATP-binding domain (NBD) is responsible for energy generation. Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|O06967|BMRA_BACSU Multidrug resistance ABC transporter ATP-binding/permease protein BmrA OS=Bacillus subtilis (strain 168) GN=bmrA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/407 (37%), Positives = 238/407 (58%), Gaps = 25/407 (6%)
Query: 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCE 85
++ +G ++ IS+++ A + LN++LP I VKA+NAE E R ++ S L +
Sbjct: 180 ILVPIGRKMFSISRETQDETARFTGLLNQILPEIRLVKASNAEDVEYGR-GKMGISSLFK 238
Query: 86 L-LKKRKMKALIPQTVQLIYFGALFILCG-GSLLVSGGSFDGCSLVSFITSLVFMIEPIQ 143
L +++ K+++L+ + L+ AL + G G + VS G +LV+FI L +I P+
Sbjct: 239 LGVREAKVQSLVGPLISLVLMAALVAVIGYGGMQVSSGELTAGALVAFILYLFQIIMPMG 298
Query: 144 GVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHING---DVKFCNISFKYADN 200
+ + + ++ A ER+ ++ E+ D V+ I ++ +SF Y +
Sbjct: 299 QITTFFTQLQKSIGATERMIEIL-----AEEEEDTVTGKQIENAHLPIQLDRVSFGYKPD 353
Query: 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260
L+L +++ I AG+ A++GPSGGGK+TL KLL R Y P +G I + D V L+S
Sbjct: 354 Q-LILKEVSAVIEAGKVTAIVGPSGGGKTTLFKLLERFYSPTAGTIRLGDEPVDTYSLES 412
Query: 261 LRRHVGLVSQDITLFSGTVAENIGY---RDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
R H+G VSQ+ L SGT+ ENI Y RD+ D E +E A A A F++ LP +
Sbjct: 413 WREHIGYVSQESPLMSGTIRENICYGLERDVT---DAE-IEKAAEMAYALNFIKELPNQF 468
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
+T +G RG LSGGQRQR+AIARAL +N S+L+LDEATS+LDS+SE V+QA++ L+
Sbjct: 469 DTEVGERGIMLSGGQRQRIAIARALLRNPSILMLDEATSSLDSQSEKSVQQALEVLMEGR 528
Query: 378 TVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAGL 424
T +VIAH L TV+ A ++ ++ G++ T G++H+ + S GL
Sbjct: 529 TTIVIAHRLSTVVDADQLLFVEKGEI------TGRGTHHELMASHGL 569
|
An efflux transporter able to transport Hoechst 33342, ethidium bromide, doxorubicin and a number of other drugs in vitro into inside out vesicles. The endogenous substrate is unknown. It has been suggested that NBD dimerization induced by ATP-binding causes a large conformational change responsible for substrate translocation (PubMed:18215075). Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 426 | ||||||
| 224088551 | 570 | ABC transporter family, retinal flippase | 0.997 | 0.745 | 0.776 | 0.0 | |
| 225440860 | 630 | PREDICTED: ABC transporter B family memb | 1.0 | 0.676 | 0.776 | 0.0 | |
| 255578947 | 650 | abc transporter, putative [Ricinus commu | 1.0 | 0.655 | 0.761 | 0.0 | |
| 297740125 | 723 | unnamed protein product [Vitis vinifera] | 0.969 | 0.571 | 0.782 | 0.0 | |
| 356537105 | 605 | PREDICTED: ABC transporter B family memb | 1.0 | 0.704 | 0.725 | 0.0 | |
| 297810479 | 635 | hypothetical protein ARALYDRAFT_487170 [ | 1.0 | 0.670 | 0.680 | 1e-171 | |
| 15237574 | 634 | ABC transporter B family member 29 [Arab | 1.0 | 0.671 | 0.678 | 1e-166 | |
| 449462954 | 643 | PREDICTED: ABC transporter B family memb | 0.995 | 0.659 | 0.690 | 1e-162 | |
| 357167520 | 640 | PREDICTED: ABC transporter B family memb | 0.976 | 0.65 | 0.580 | 1e-142 | |
| 116310346 | 699 | OSIGBa0134P10.6 [Oryza sativa Indica Gro | 0.967 | 0.589 | 0.587 | 1e-142 |
| >gi|224088551|ref|XP_002308470.1| ABC transporter family, retinal flippase subfamily [Populus trichocarpa] gi|222854446|gb|EEE91993.1| ABC transporter family, retinal flippase subfamily [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/426 (77%), Positives = 384/426 (90%), Gaps = 1/426 (0%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MA++MLVISP LSLISA+VIP AL IAYLG RLRKISK++ L+I++LSAYLNEVLPAIL
Sbjct: 146 MASRMLVISPALSLISAMVIPCTALAIAYLGTRLRKISKKAQLTISALSAYLNEVLPAIL 205
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKA+NAE CE ARF RLA++DL LL KRKMKA IPQ VQ+IYFGAL ILC GS++VS
Sbjct: 206 FVKASNAEFCEIARFERLAYADLSALLTKRKMKAFIPQIVQIIYFGALSILCVGSMVVSS 265
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G FDGCS+VSFITSL+F++EPIQ VGKAYNE+KQGEPAIERLFDLT+FKSKV EKPDAV
Sbjct: 266 GCFDGCSMVSFITSLIFVVEPIQDVGKAYNEWKQGEPAIERLFDLTRFKSKVTEKPDAVD 325
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LDH++GDVKFC+ISF+Y +N PLVL+ LNLHI+AGETVAL+GPSGGGK+TL K+LLRLYD
Sbjct: 326 LDHVSGDVKFCDISFRYGENSPLVLNGLNLHIKAGETVALVGPSGGGKTTLIKMLLRLYD 385
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PL GCILVD+ ++QN++L+SLRRHVGLVSQDI+LFSGTVAENIGYRD+MTKIDME+VE
Sbjct: 386 PLHGCILVDNQNIQNVQLESLRRHVGLVSQDISLFSGTVAENIGYRDIMTKIDMEKVELA 445
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GY T+IGPRGSSLSGGQ+QRLAIARALYQ+SS+LILDEATSALDS
Sbjct: 446 AQTANADEFIRKLPKGYQTNIGPRGSSLSGGQKQRLAIARALYQDSSILILDEATSALDS 505
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
RSELLVRQAV+RL+ +HTVLVIAH LETV+MAKRV LLD+GKL+EL S LLGS+H S
Sbjct: 506 RSELLVRQAVERLMENHTVLVIAHRLETVLMAKRVLLLDDGKLQELTPS-LLGSHHSSQT 564
Query: 421 SAGLVI 426
GLVI
Sbjct: 565 FTGLVI 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440860|ref|XP_002276489.1| PREDICTED: ABC transporter B family member 29, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/426 (77%), Positives = 381/426 (89%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MATQML ISP LSLISALVIP M+LVIA+LGERLRKISK++HLSIA+LSAYLNE+LP+IL
Sbjct: 205 MATQMLFISPTLSLISALVIPFMSLVIAHLGERLRKISKRAHLSIAALSAYLNEILPSIL 264
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKA+NAE+ ESARFRRLAH+DL E LKKRKMKALIPQ +Q+IYFGAL I GSL+V
Sbjct: 265 FVKASNAELSESARFRRLAHTDLSERLKKRKMKALIPQIMQIIYFGALSIFFVGSLVVPS 324
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G+ DG LVSF+TSLV +I+PIQGVGKAYNE KQGEPAIERLFDLT+F+S+V+EKPDAV
Sbjct: 325 GALDGSLLVSFVTSLVLLIDPIQGVGKAYNELKQGEPAIERLFDLTRFESQVLEKPDAVD 384
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LD + G+VKFCNISF+Y D MPL+L+ L+LHI+AGETVAL+GPSGGGK+TL KLLLRLYD
Sbjct: 385 LDSVIGEVKFCNISFRYGDRMPLILNGLDLHIKAGETVALVGPSGGGKTTLVKLLLRLYD 444
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PL GC+++D+H++Q IRL SLRRHVGLVSQDITL SGTV ENIGYRDLMT IDMERVE
Sbjct: 445 PLCGCVILDNHNIQGIRLKSLRRHVGLVSQDITLLSGTVVENIGYRDLMTTIDMERVELA 504
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R L +GY T+IGPRGS+LSGGQ+QR+AIARALYQN S+LILDEATSALDS
Sbjct: 505 AQTANADEFIRNLSEGYQTNIGPRGSTLSGGQKQRIAIARALYQNCSILILDEATSALDS 564
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
RSELLVRQAV+RL+ + TVLVIAH LETV+MAKRVFLLD+GKLEELNRS LLG DSL+
Sbjct: 565 RSELLVRQAVERLMENRTVLVIAHRLETVLMAKRVFLLDDGKLEELNRSALLGGKSDSLL 624
Query: 421 SAGLVI 426
S GLVI
Sbjct: 625 STGLVI 630
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578947|ref|XP_002530326.1| abc transporter, putative [Ricinus communis] gi|223530130|gb|EEF32042.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/427 (76%), Positives = 381/427 (89%), Gaps = 1/427 (0%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MA++ML ISPVLSLISA+VIP MA IA LGERLRKISK++HLSIA+LSAYLNEVLPAIL
Sbjct: 224 MASRMLAISPVLSLISAMVIPCMAFAIACLGERLRKISKKAHLSIATLSAYLNEVLPAIL 283
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANN E+CESARF+RLAH+DL E KK+ MK LIPQ +Q+IYFGALF+LC GS++VS
Sbjct: 284 FVKANNGELCESARFQRLAHADLTEHFKKKNMKVLIPQIIQIIYFGALFMLCCGSMVVSC 343
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G FDGCS+VSF+TSLVF++EPIQ VGKAYNE+KQGEPAIERLFDLT KSKVIEK +AV
Sbjct: 344 GCFDGCSMVSFVTSLVFLVEPIQDVGKAYNEWKQGEPAIERLFDLTMLKSKVIEKTEAVD 403
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LDH+ GDVKFC++SF+Y DN LVL++LNLHI+AGET+ALIGPSGGGK+TL KLLL LYD
Sbjct: 404 LDHVIGDVKFCDVSFRYGDNSSLVLNRLNLHIKAGETIALIGPSGGGKTTLVKLLLHLYD 463
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SGCILVD+ ++ NI L+SLR+HVGLVSQD TLFSGT+AENIGYRDLMT+IDME+VE
Sbjct: 464 PSSGCILVDNQNINNILLESLRKHVGLVSQDTTLFSGTIAENIGYRDLMTEIDMEKVEMA 523
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GY T+IGPRGSSLSGGQ+QRLAIARALYQ+SS+LILDEATSALDS
Sbjct: 524 AKTANADEFIRKLPKGYKTNIGPRGSSLSGGQKQRLAIARALYQDSSILILDEATSALDS 583
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH-DSL 419
RSELLVRQA+ RL+ +HTV++IAH LETV+MAKRVF L+NGKLEEL+RS L + H +SL
Sbjct: 584 RSELLVRQALQRLMENHTVIIIAHRLETVLMAKRVFSLENGKLEELSRSNLFSTAHSNSL 643
Query: 420 VSAGLVI 426
+ GLVI
Sbjct: 644 SATGLVI 650
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740125|emb|CBI30307.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/413 (78%), Positives = 372/413 (90%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MATQML ISP LSLISALVIP M+LVIA+LGERLRKISK++HLSIA+LSAYLNE+LP+IL
Sbjct: 299 MATQMLFISPTLSLISALVIPFMSLVIAHLGERLRKISKRAHLSIAALSAYLNEILPSIL 358
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKA+NAE+ ESARFRRLAH+DL E LKKRKMKALIPQ +Q+IYFGAL I GSL+V
Sbjct: 359 FVKASNAELSESARFRRLAHTDLSERLKKRKMKALIPQIMQIIYFGALSIFFVGSLVVPS 418
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G+ DG LVSF+TSLV +I+PIQGVGKAYNE KQGEPAIERLFDLT+F+S+V+EKPDAV
Sbjct: 419 GALDGSLLVSFVTSLVLLIDPIQGVGKAYNELKQGEPAIERLFDLTRFESQVLEKPDAVD 478
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LD + G+VKFCNISF+Y D MPL+L+ L+LHI+AGETVAL+GPSGGGK+TL KLLLRLYD
Sbjct: 479 LDSVIGEVKFCNISFRYGDRMPLILNGLDLHIKAGETVALVGPSGGGKTTLVKLLLRLYD 538
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PL GC+++D+H++Q IRL SLRRHVGLVSQDITL SGTV ENIGYRDLMT IDMERVE
Sbjct: 539 PLCGCVILDNHNIQGIRLKSLRRHVGLVSQDITLLSGTVVENIGYRDLMTTIDMERVELA 598
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R L +GY T+IGPRGS+LSGGQ+QR+AIARALYQN S+LILDEATSALDS
Sbjct: 599 AQTANADEFIRNLSEGYQTNIGPRGSTLSGGQKQRIAIARALYQNCSILILDEATSALDS 658
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413
RSELLVRQAV+RL+ + TVLVIAH LETV+MAKRVFLLD+GKLEELNRS LLG
Sbjct: 659 RSELLVRQAVERLMENRTVLVIAHRLETVLMAKRVFLLDDGKLEELNRSALLG 711
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537105|ref|XP_003537071.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/427 (72%), Positives = 375/427 (87%), Gaps = 1/427 (0%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M QMLVISP LSLISA+++P M LV+ +LG+ LRKISK++H+SIA+LSAYLNEVLPAIL
Sbjct: 179 MMMQMLVISPTLSLISAMIVPCMVLVVTFLGQELRKISKEAHVSIAALSAYLNEVLPAIL 238
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNA+ CE+ RF+RLA D LKK+KMKALIPQ +Q IYFG L ILC GSL++S
Sbjct: 239 FVKANNAQSCENTRFKRLALMDYNARLKKKKMKALIPQVIQAIYFGVLSILCAGSLMISR 298
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
GS D SLVSF+TSL+F+I+PIQ VGKAYNE++QGEPA ERL +T+FK+KV+EKPDA
Sbjct: 299 GSLDRYSLVSFVTSLLFLIQPIQDVGKAYNEWRQGEPAAERLLAMTRFKNKVVEKPDAAD 358
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LD + GD+KFC++SF Y D+M LVL+ LNLHI++GE VA++GPSGGGK+TL KLLLRLYD
Sbjct: 359 LDRVTGDLKFCDVSFGYNDDMALVLNALNLHIKSGEIVAIVGPSGGGKTTLVKLLLRLYD 418
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P+SGCIL+D+H++QNIRL SLRRHV +VSQDITLFSGTVAENIGYRDL TKIDM+RV+H
Sbjct: 419 PISGCILIDNHNIQNIRLASLRRHVSVVSQDITLFSGTVAENIGYRDLTTKIDMDRVKHA 478
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TA+ADEF++ LP+GY T+IGPRGS+LSGGQRQRLAIARA YQNSS+LILDEATS+LDS
Sbjct: 479 AQTAHADEFIKKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSSLDS 538
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH-DSL 419
+SELLVRQAV+RL+ + TVLVI+H LETVMMAKRVFLLDNGKL+EL +STLL +H DSL
Sbjct: 539 KSELLVRQAVERLMQNRTVLVISHRLETVMMAKRVFLLDNGKLKELPQSTLLDGHHKDSL 598
Query: 420 VSAGLVI 426
+S+GLVI
Sbjct: 599 LSSGLVI 605
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810479|ref|XP_002873123.1| hypothetical protein ARALYDRAFT_487170 [Arabidopsis lyrata subsp. lyrata] gi|297318960|gb|EFH49382.1| hypothetical protein ARALYDRAFT_487170 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/426 (68%), Positives = 363/426 (85%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+ AYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 210 MTAHMIVASPALTLVSAMVIPSVALLTAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 269
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNAE+ ES RF+R A + L E KK+KMK+LIPQ VQ++Y G+L I C G+++++G
Sbjct: 270 FVKANNAEISESVRFQRFARAALDENFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 329
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
S ++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 330 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 389
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 390 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 449
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I +D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 450 PSSGSIFIDKSDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 509
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQNSSVLILDEATSALDS
Sbjct: 510 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQNSSVLILDEATSALDS 569
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
SELLVR+A++R++ HTV+VIAH LETVMMA+RVFLL+ GKL+ELNRS+LL ++ DSL
Sbjct: 570 LSELLVREALERVMQDHTVIVIAHRLETVMMAQRVFLLERGKLKELNRSSLLSTHKDSLS 629
Query: 421 SAGLVI 426
SAGLVI
Sbjct: 630 SAGLVI 635
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237574|ref|NP_196011.1| ABC transporter B family member 29 [Arabidopsis thaliana] gi|75335698|sp|Q9LZB8.1|AB29B_ARATH RecName: Full=ABC transporter B family member 29, chloroplastic; Short=ABC transporter ABCB.29; Short=AtABCB29; AltName: Full=ABC2 homolog 12; Flags: Precursor gi|7406401|emb|CAB85511.1| ABC transporter-like protein [Arabidopsis thaliana] gi|16604565|gb|AAL24084.1| putative ABC transporter protein [Arabidopsis thaliana] gi|20259177|gb|AAM14304.1| putative ABC transporter [Arabidopsis thaliana] gi|332003288|gb|AED90671.1| ABC transporter B family member 29 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/426 (67%), Positives = 365/426 (85%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+IAYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 209 MTAHMIVASPALTLVSAMVIPSVALLIAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 268
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNAE+ ES RF+R A +DL E KK+KMK+LIPQ VQ++Y G+L I C G+++++G
Sbjct: 269 FVKANNAEISESVRFQRFARADLDERFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 328
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
S ++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 329 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 388
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 389 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 448
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I++D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 449 PSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 508
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQ SS+LILDEATSALDS
Sbjct: 509 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQKSSILILDEATSALDS 568
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
SELLVR+A++R++ HTV+VIAH LETVMMA+RVFL++ GKL+ELNRS+LL ++ DSL
Sbjct: 569 LSELLVREALERVMQDHTVIVIAHRLETVMMAQRVFLVERGKLKELNRSSLLSTHKDSLT 628
Query: 421 SAGLVI 426
SAGLVI
Sbjct: 629 SAGLVI 634
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462954|ref|XP_004149200.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Cucumis sativus] gi|449522662|ref|XP_004168345.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 294/426 (69%), Positives = 358/426 (84%), Gaps = 2/426 (0%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MATQML ISPVLSLISALVIP +ALVIAYLGER +ISK + LSIA+LS+YLNEVLPA L
Sbjct: 220 MATQMLAISPVLSLISALVIPCVALVIAYLGERQHRISKMASLSIANLSSYLNEVLPAFL 279
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKAN+AE CE+ RF+RLA +DL E LKK+KMKA +P VQ +YF +L +L G L+VS
Sbjct: 280 FVKANSAEFCENIRFQRLARTDLYERLKKKKMKAFVPHVVQALYFVSLSMLFVGLLVVSR 339
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
GSF S+VSF+TSL F+IEP+Q +GKAYNE K+GEPAIERLF+L +FK VIE DAV
Sbjct: 340 GSFSSSSMVSFVTSLGFLIEPVQKIGKAYNELKEGEPAIERLFELIEFKPTVIETHDAVD 399
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G++KFCN+SF Y NMPLVLD LNLHI+AGETVA +GPSGGGK+TL KLLLRLYD
Sbjct: 400 LNCLKGELKFCNVSFTYGSNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLIKLLLRLYD 459
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PLSG IL+D+H+++ +R SLRR++GLVSQD+ LFSGTVAENIGY DL +IDMERV+
Sbjct: 460 PLSGNILIDNHNIRTVRFRSLRRNIGLVSQDMILFSGTVAENIGYYDLTKEIDMERVKEV 519
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANADEF+R LP+GYNT+IGPRG +LSGGQ+QRLAIARALYQNSS+L+LDEATSALDS
Sbjct: 520 AQIANADEFIRRLPKGYNTNIGPRGLTLSGGQKQRLAIARALYQNSSILVLDEATSALDS 579
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
SE+LVR A++RL+ +HTVL+IAH LET++MA RVF+LD GKLEEL R + S+++SL+
Sbjct: 580 ASEILVRHALERLMENHTVLIIAHRLETILMANRVFILDGGKLEELPRPAI--SDYNSLI 637
Query: 421 SAGLVI 426
GLVI
Sbjct: 638 KTGLVI 643
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357167520|ref|XP_003581203.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/417 (58%), Positives = 323/417 (77%), Gaps = 1/417 (0%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M TQM+ I+ LSL++A+VIP M +VIA LGERLR+ISK++HLS+A L+AYLN+VLP+IL
Sbjct: 215 MGTQMVAINLQLSLVAAMVIPCMCIVIANLGERLRQISKKAHLSLAMLAAYLNDVLPSIL 274
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
VK NN E E RF L +L L K+ MKALIPQ V+ Y L +LC GS+ VSG
Sbjct: 275 TVKVNNGEHKEILRFHELGFGELKNNLDKKNMKALIPQAVRTTYIVGLVVLCAGSIAVSG 334
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
+FD +SF+T+L +EPIQ +GKAYNE+KQGEPA+ER+FDLT+F +V +KP A+
Sbjct: 335 TTFDAEGFLSFLTALALFVEPIQDLGKAYNEYKQGEPALERIFDLTRFIPQVRDKPSALH 394
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L + GD+KF +++F+YA MP V D +NLHIR GETVA++GPSGGGK+T+AKLLLRLY
Sbjct: 395 LKSVMGDIKFQDVTFRYAAGMPPVADGVNLHIRPGETVAIVGPSGGGKTTIAKLLLRLYH 454
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P +G I++D+HD+Q+I+L LR H+ VSQD LFSGT+AENI Y D M I+M +VE+
Sbjct: 455 PQTGYIVLDNHDIQDIQLQCLRTHIAFVSQDAMLFSGTIAENIAYGDPMGDINMRKVENA 514
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANADEF++ LP+GY++++G RGSSLSGGQ+QRL+IARA+YQNSS+LILDEATSALD+
Sbjct: 515 AKIANADEFIKMLPEGYDSYVGQRGSSLSGGQKQRLSIARAIYQNSSILILDEATSALDN 574
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLL-GSNH 416
RSELL+++ + + +HTVL+IAH LE ++MA R+ LL+ GKL+E+ +S L G H
Sbjct: 575 RSELLLKETLTTFMTNHTVLIIAHRLEMILMADRIVLLEGGKLQEITKSAFLSGDGH 631
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116310346|emb|CAH67360.1| OSIGBa0134P10.6 [Oryza sativa Indica Group] gi|125548217|gb|EAY94039.1| hypothetical protein OsI_15818 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/412 (58%), Positives = 320/412 (77%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M QM+ I+P+LS+++A VIP M LVIA LG RLR+ISK++H+S+A L+ YLN+VLP++L
Sbjct: 269 MGHQMVTINPLLSMVAATVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLNDVLPSML 328
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
VKANN E E +RF+ L DL L K+KMKA IPQ V+ Y G L +LC GS+ VSG
Sbjct: 329 TVKANNGEGKEISRFQNLVIVDLKNNLSKKKMKAFIPQVVRTTYIGGLVVLCAGSIAVSG 388
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
FDG +SF+T+L IEPIQ GKAYNE+KQGEPA++R+FDLT+F +V +K AV
Sbjct: 389 TFFDGEGFLSFLTALALAIEPIQDFGKAYNEYKQGEPALDRIFDLTRFIPEVRDKATAVH 448
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ GD+ F +++F+Y D MP +LD +NLHIR+GET+A +GPSGGGK+TLAKLLLRLY
Sbjct: 449 LKYVKGDINFHDVTFQYIDGMPPILDGVNLHIRSGETIAFVGPSGGGKTTLAKLLLRLYQ 508
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG IL+D+ D+++I+L LR H+ VSQD L SGT+AENI Y D M IDM +VE
Sbjct: 509 PQSGYILLDNCDIRDIQLQCLRTHIAFVSQDAMLLSGTIAENIAYGDPMGAIDMSKVESA 568
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANA+EF++ LP GYN+++G +GSSLSGGQ+QRL+IARA+YQNSSVLILDEATSALD+
Sbjct: 569 AKIANAEEFIKMLPGGYNSYVGQKGSSLSGGQKQRLSIARAIYQNSSVLILDEATSALDN 628
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLL 412
RSE+LV++A+ L+ +HTVLVIAH LE ++MA R+ LL+ GKL E+ +S+ L
Sbjct: 629 RSEILVKEALTNLMANHTVLVIAHRLEMILMADRIVLLEGGKLREITKSSFL 680
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 426 | ||||||
| TAIR|locus:2150575 | 634 | ABCB29 "ATP-binding cassette B | 1.0 | 0.671 | 0.669 | 1.1e-149 | |
| UNIPROTKB|Q7XSA8 | 682 | OJ000126_13.5 "OJ000126_13.5 p | 0.570 | 0.356 | 0.547 | 7.8e-114 | |
| UNIPROTKB|Q7NI55 | 583 | gll2329 "HlyB/MsbA family ABC | 0.974 | 0.711 | 0.368 | 2e-72 | |
| UNIPROTKB|A9WF95 | 619 | Caur_2878 "ABC transporter rel | 0.964 | 0.663 | 0.380 | 4.5e-66 | |
| UNIPROTKB|Q74AU0 | 571 | msbA "Phospholipid/lipopolysac | 0.943 | 0.704 | 0.373 | 4.7e-64 | |
| TIGR_CMR|GSU_2260 | 571 | GSU_2260 "ABC transporter, ATP | 0.943 | 0.704 | 0.373 | 4.7e-64 | |
| UNIPROTKB|Q9RRV6 | 588 | DR_2379 "ABC transporter, ATP- | 0.936 | 0.678 | 0.388 | 2.1e-61 | |
| TIGR_CMR|SPO_3005 | 643 | SPO_3005 "efflux ABC transport | 0.960 | 0.636 | 0.354 | 7.1e-61 | |
| UNIPROTKB|Q9KQW9 | 582 | msbA "Lipid A export ATP-bindi | 0.948 | 0.694 | 0.356 | 9e-61 | |
| TIGR_CMR|VC_1878 | 582 | VC_1878 "transport ATP-binding | 0.948 | 0.694 | 0.356 | 9e-61 |
| TAIR|locus:2150575 ABCB29 "ATP-binding cassette B29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
Identities = 285/426 (66%), Positives = 356/426 (83%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+IAYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 209 MTAHMIVASPALTLVSAMVIPSVALLIAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 268
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIXXXXXXXXXX 120
FVKANNAE+ ES RF+R A +DL E KK+KMK+LIPQ VQ++Y G+L I
Sbjct: 269 FVKANNAEISESVRFQRFARADLDERFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 328
Query: 121 XXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 329 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 388
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 389 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 448
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I++D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 449 PSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 508
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQ SS+LILDEATSALDS
Sbjct: 509 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQKSSILILDEATSALDS 568
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
SELLVR+A++R++ HTV+VIAH LETVMMA+RVFL++ GKL+ELNRS+LL ++ DSL
Sbjct: 569 LSELLVREALERVMQDHTVIVIAHRLETVMMAQRVFLVERGKLKELNRSSLLSTHKDSLT 628
Query: 421 SAGLVI 426
SAGLVI
Sbjct: 629 SAGLVI 634
|
|
| UNIPROTKB|Q7XSA8 OJ000126_13.5 "OJ000126_13.5 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 133/243 (54%), Positives = 176/243 (72%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M QM+ I+P+LS+++A VIP M LVIA LG RLR+ISK++H+S+A L+ YLN+VLP++L
Sbjct: 269 MGHQMVTINPLLSVVAATVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLNDVLPSML 328
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIXXXXXXXXXX 120
VKANN E E +RF+ L DL L K+KMKA IPQ V+ Y G L +
Sbjct: 329 TVKANNGEGKEISRFQNLVIVDLKNNLSKKKMKAFIPQVVRTTYIGGLLVLCAGSIAVSG 388
Query: 121 XXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
FDG +SF+T+L IEPIQ GKAYNE+KQGEPA++R+FDLT+F +V +K AV
Sbjct: 389 TFFDGEGFLSFLTALTLAIEPIQDFGKAYNEYKQGEPALDRIFDLTRFIPEVRDKATAVH 448
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ GD+ F +++F+Y D MP +LD +NLHIR+GET+A +GPSGGGK+TLAKLLLRLY
Sbjct: 449 LKYVKGDINFHDVTFQYIDGMPPILDGVNLHIRSGETIAFVGPSGGGKTTLAKLLLRLYQ 508
Query: 241 PLS 243
P S
Sbjct: 509 PQS 511
|
|
| UNIPROTKB|Q7NI55 gll2329 "HlyB/MsbA family ABC transporter" [Gloeobacter violaceus PCC 7421 (taxid:251221)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 157/426 (36%), Positives = 249/426 (58%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ + ++ ++ L+L++ +V P + + + G +L +S+ S IA LS+ L E+ AI
Sbjct: 150 VVSYLIYLNWQLTLVTLVVSPLIGWLFGWFGNKLADLSRTSQEQIADLSSRLYEIFSAIR 209
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFIXXXXXXXXX 119
++A AE E RF L+ + + ++KA+ + L+ G L +
Sbjct: 210 IIRAFAAEDYEQRRFGELSDENRLARFRTEQIKAIQYPVIGLMQALGVLLVFWVGAWQIS 269
Query: 120 XXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
SF T + +++P++ + + NE +Q + +R+F+L K V++ PDAV
Sbjct: 270 AGNLPAFEFASFATGIGLLLDPVRMITENLNELRQAGASADRVFELFDLKPTVLQAPDAV 329
Query: 180 SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
L + G ++F NI F YAD+ P VL+ +NL + GE VAL+GPSG GKS+L LL R Y
Sbjct: 330 PLSPVKGRIEFSNIDFSYADDRP-VLNNVNLRVEPGEVVALVGPSGSGKSSLVNLLPRFY 388
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR--DLMTKIDMERV 297
DP G + +D DV+ + SLRR +G+V Q+ LFSGT+A+NI Y + K ++R+
Sbjct: 389 DPQQGTVRIDGTDVRAVTFKSLRRQIGIVPQETLLFSGTIAQNIAYGCDEADIKGMLDRI 448
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A+ ANA EF++ LP GY+ + G LSGGQRQR+AIARA+ + +LILDEATSA
Sbjct: 449 VRAAKIANAHEFIQDLPGGYDAKVSEGGRGLSGGQRQRIAIARAVLLDPKILILDEATSA 508
Query: 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417
LD+ SE LV++A++RL+ TV+++AH L T+ A R+ +L+ G++ E NH
Sbjct: 509 LDNESEALVQEALNRLMQDRTVIIVAHRLSTIRDADRILVLERGRIIE-------AGNHL 561
Query: 418 SLVSAG 423
SL+ +G
Sbjct: 562 SLIDSG 567
|
|
| UNIPROTKB|A9WF95 Caur_2878 "ABC transporter related" [Chloroflexus aurantiacus J-10-fl (taxid:324602)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 163/428 (38%), Positives = 245/428 (57%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
MLV+S LS ++ +++P++ L+ + G LR+IS +A ++ L E + + V++
Sbjct: 182 MLVVSWQLSGLALILVPTLVLIGVFFGRWLRQISTAVQDRLADATSILEETVAGVRVVRS 241
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF-IXXXXXXXXXXXXF 123
E E RFR + LK +++A+ + L + AL I
Sbjct: 242 FRREDYEITRFRAAVEATFATALKLARIRAIFQPAMSLAVWMALIGILAIGGYLVSTGVL 301
Query: 124 DGCSLVSFITSLVFMIEPIQGV-GKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLD 182
SL+SF+ V M GV + + ++ A R+F+L + V + PDA+ L
Sbjct: 302 TTGSLISFLFYAV-MAAGSMGVFASLFAQLQEALGATTRVFELLDQQPLVADAPDAIPLP 360
Query: 183 HINGDVKFCNISFKY---ADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
+ G ++F +SF Y N P+VL +L I AGE VAL+GPSG GKST+A L+
Sbjct: 361 PVEGRIEFREVSFAYQSATSNGSPAPVVLRDFSLTIEAGEMVALVGPSGAGKSTIASLIP 420
Query: 237 RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296
R YD +G +L+D +DV+ +++ SLR +G+V Q+ LFSG+V +NI Y L D E
Sbjct: 421 RFYDVSAGSVLIDGYDVRRVQIQSLRDQIGIVLQETQLFSGSVRDNIRYGRLEAT-D-EE 478
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
+E AR ANA EF+ LP GY+T +G RG LSGGQRQR+AIARA+ +N +LILDEATS
Sbjct: 479 IEAAARMANAHEFICQLPDGYDTPVGERGVRLSGGQRQRIAIARAILKNPRILILDEATS 538
Query: 357 ALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416
+LDS SE LV++A++RL+ T +VIAH L TV A R+ ++ G+L E+ G++H
Sbjct: 539 SLDSESERLVQEALERLMAGRTSIVIAHRLSTVQRADRIAVIVAGELVEI------GTHH 592
Query: 417 DSLVSAGL 424
+ L G+
Sbjct: 593 ELLARDGV 600
|
|
| UNIPROTKB|Q74AU0 msbA "Phospholipid/lipopolysaccharide-flipping ABC transporter MsbA" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 155/415 (37%), Positives = 237/415 (57%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI+ +V+P A+ +G+R++ ++KQS + +++ L E I VKA E
Sbjct: 158 LALITFIVLPLTAVPAQKIGKRIKNLAKQSLGQMGEITSILQETFSGIKVVKAFRQEKSV 217
Query: 72 SARFRRLAHSDLCELLKKR-KMKALIPQTVQLIY-FGALFIXXXXXXXXXXXXFDGCSLV 129
RF R + L L+K K ++L +++I FG +
Sbjct: 218 VDRFSR-TNLGLYRYLRKSIKYESLHTPIMEIITSFGVAGVIWFGGSQVMDGKMTAPEFF 276
Query: 130 SFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVK 189
SF+T++V + PI+ V AYN +Q A ER+F++ + + + PD V + G V+
Sbjct: 277 SFLTAMVMLYGPIKKVLSAYNTVQQAMGAAERVFEVIDHPADIQDPPDPVEPGMVRGSVE 336
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+SF+Y D VL ++ GE VAL+GPSG GK+T+ L+ R YD G +L+D
Sbjct: 337 LRNVSFRYDDEE--VLRDVSFTAGRGEVVALVGPSGAGKTTVMSLIPRFYDVTGGAVLID 394
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
DV+ +RLD L + LV Q+ LF+ T+A NI + +E VE AR+A A +F
Sbjct: 395 GIDVRRLRLDDLLCQIALVDQETILFNETIANNIRLGN--PDATLEEVERAARSAFAHDF 452
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ +P+GY+T+IG RG LSGGQRQRL IARA+ +N+ +L+LDEATSALD+ SE +V+QA
Sbjct: 453 IMEMPEGYDTNIGDRGVRLSGGQRQRLCIARAILKNAPILLLDEATSALDTESEHMVQQA 512
Query: 370 VDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAGL 424
+ L+ + T LVIAH L TV+ A R+ ++D G++ E+ G+N + L GL
Sbjct: 513 LTNLMKNRTTLVIAHRLSTVLHADRIVVIDKGEVVEV------GTNDELLARDGL 561
|
|
| TIGR_CMR|GSU_2260 GSU_2260 "ABC transporter, ATP-binding protein, MsbA family" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 155/415 (37%), Positives = 237/415 (57%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI+ +V+P A+ +G+R++ ++KQS + +++ L E I VKA E
Sbjct: 158 LALITFIVLPLTAVPAQKIGKRIKNLAKQSLGQMGEITSILQETFSGIKVVKAFRQEKSV 217
Query: 72 SARFRRLAHSDLCELLKKR-KMKALIPQTVQLIY-FGALFIXXXXXXXXXXXXFDGCSLV 129
RF R + L L+K K ++L +++I FG +
Sbjct: 218 VDRFSR-TNLGLYRYLRKSIKYESLHTPIMEIITSFGVAGVIWFGGSQVMDGKMTAPEFF 276
Query: 130 SFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVK 189
SF+T++V + PI+ V AYN +Q A ER+F++ + + + PD V + G V+
Sbjct: 277 SFLTAMVMLYGPIKKVLSAYNTVQQAMGAAERVFEVIDHPADIQDPPDPVEPGMVRGSVE 336
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+SF+Y D VL ++ GE VAL+GPSG GK+T+ L+ R YD G +L+D
Sbjct: 337 LRNVSFRYDDEE--VLRDVSFTAGRGEVVALVGPSGAGKTTVMSLIPRFYDVTGGAVLID 394
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
DV+ +RLD L + LV Q+ LF+ T+A NI + +E VE AR+A A +F
Sbjct: 395 GIDVRRLRLDDLLCQIALVDQETILFNETIANNIRLGN--PDATLEEVERAARSAFAHDF 452
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ +P+GY+T+IG RG LSGGQRQRL IARA+ +N+ +L+LDEATSALD+ SE +V+QA
Sbjct: 453 IMEMPEGYDTNIGDRGVRLSGGQRQRLCIARAILKNAPILLLDEATSALDTESEHMVQQA 512
Query: 370 VDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAGL 424
+ L+ + T LVIAH L TV+ A R+ ++D G++ E+ G+N + L GL
Sbjct: 513 LTNLMKNRTTLVIAHRLSTVLHADRIVVIDKGEVVEV------GTNDELLARDGL 561
|
|
| UNIPROTKB|Q9RRV6 DR_2379 "ABC transporter, ATP-binding protein, MsbA family" [Deinococcus radiodurans R1 (taxid:243230)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 166/427 (38%), Positives = 237/427 (55%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI +P MA Y +L + QS I ++A + + L I V++ E E
Sbjct: 173 LTLILLAFLPFMAAYALYFNVQLNRALLQSRQRIGEVNAQVEDSLAGIRVVQSFTGEGTE 232
Query: 72 SARFRRLAHSDL----------CELLKKRKMKALIP-QTVQLIYFGALFIXXXXXXXXXX 120
+ RF A +DL EL + M A T+ ++ FG I
Sbjct: 233 ARRFG--AANDLFVEGRRGEYRAELYFYQGMTAFTGLMTIAVLMFGGWAILQGGLR---- 286
Query: 121 XXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
DG LV+++ + ++EPI+ + ++G +R ++ +++ P A
Sbjct: 287 --IDG--LVTYLMCVGILLEPIRRLVNLARVLQEGVTGFQRFREMMAVTPDIVDAPGAAE 342
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ G+V+F +SF Y+ + P VL LNL IRAGE VAL+G SG GKSTL L+ R YD
Sbjct: 343 LQNVRGEVEFQGVSFGYSPDAPPVLRDLNLKIRAGEFVALVGASGVGKSTLCALIPRFYD 402
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEH 299
+G +LVD HDV + L SLRR VG+V QD+ LFSGTV ENI Y R T + E ++
Sbjct: 403 VSAGQVLVDGHDVCGVTLASLRRSVGVVQQDVYLFSGTVMENIRYGRPGAT--EAEAMD- 459
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
AR A A +F+ LPQGY+T IG RG LSGGQ+QRL+IAR ++ +LI DEATS+LD
Sbjct: 460 AARQAGAHDFITRLPQGYHTDIGQRGVKLSGGQKQRLSIARVFLKDPPILIFDEATSSLD 519
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL-DNGKLEELNRSTLL--GSNH 416
+ SE LV+++++RL T LVIAH L TV A R+ +L +NG EE + + LL G +
Sbjct: 520 NESERLVQESLERLARRRTTLVIAHRLSTVRNAHRIVVLTENGVAEEGSHAELLALGGEY 579
Query: 417 DSLVSAG 423
L + G
Sbjct: 580 ARLQALG 586
|
|
| TIGR_CMR|SPO_3005 SPO_3005 "efflux ABC transporter, permease/ATP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 150/423 (35%), Positives = 242/423 (57%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
ML+ S L+ + L++P++ + I LG RLR IS+++ IA+ S +E L A+ V++
Sbjct: 213 MLLTSAKLTGLVLLLVPAVLVPILVLGRRLRAISRENQDWIAASSGNASEALSAVQTVQS 272
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ-LIYFGALFIXXXXXXXXXXXXF 123
E A F + + ++ +A++ V L++ G + +
Sbjct: 273 YTNETASRAAFAEVTETAYDVSRRRIATRAVLTVIVIFLVFSGIVGVLWMGANDVRAGVM 332
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIE--KPDAVSL 181
+L+ F+ V M + + + ++E ++ A ERL +L V + +P A++L
Sbjct: 333 TEGTLIQFVIYSVIMAGAVAALSEIWSELQRAAGATERLVELLNAADSVNDPVQPAALAL 392
Query: 182 DHINGDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+ G++ F N++F+Y A + LD ++L +R GETVA +GPSG GK+T+ +L+ R YD
Sbjct: 393 P-VQGEIAFDNVTFRYPARPDQVALDGMSLTVRPGETVAFVGPSGAGKTTVIQLIQRFYD 451
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG +L+D D+ + RRH+ LV QD +F+ + ENI + + D E VE
Sbjct: 452 PQSGRVLLDGQDLTTLSRADFRRHIALVPQDPVIFAASARENIRF-GRPSASDAE-VEEA 509
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
AR A A EF+ LP+GY++ +G RG LSGGQ+QR+AIARA+ +++ VL+LDEATSALD+
Sbjct: 510 ARAAAAHEFIAALPEGYDSFVGERGVMLSGGQKQRIAIARAILRDAPVLLLDEATSALDA 569
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLV 420
SE V+QAV+RL T L++AH L TV A R+ +L+ G++ + + T HD LV
Sbjct: 570 ESERAVQQAVERLSADRTTLIVAHRLATVKKADRIVVLEAGRI--VAQGT-----HDELV 622
Query: 421 SAG 423
+ G
Sbjct: 623 AGG 625
|
|
| UNIPROTKB|Q9KQW9 msbA "Lipid A export ATP-binding/permease protein MsbA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 146/410 (35%), Positives = 234/410 (57%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ T M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L
Sbjct: 156 LLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHK 215
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF--IXXXXXXXX 118
V + + E RF ++++S + +K +++ +Q+I ALF +
Sbjct: 216 VVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSI 275
Query: 119 XXXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA 178
G V F +++ ++ P++ + +EF++G A + LF L +++
Sbjct: 276 RAELTPGTFTVVF-SAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--RDNGK 332
Query: 179 VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
+ +NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R
Sbjct: 333 YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVE 298
YD SG I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA-AEGEYTREQIE 451
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
AR A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSAL
Sbjct: 452 QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408
D+ SE ++ A+D L + TVLVIAH L T+ A + ++D G++ E R
Sbjct: 512 DTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561
|
|
| TIGR_CMR|VC_1878 VC_1878 "transport ATP-binding protein MsbA" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 146/410 (35%), Positives = 234/410 (57%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ T M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L
Sbjct: 156 LLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHK 215
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF--IXXXXXXXX 118
V + + E RF ++++S + +K +++ +Q+I ALF +
Sbjct: 216 VVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSI 275
Query: 119 XXXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA 178
G V F +++ ++ P++ + +EF++G A + LF L +++
Sbjct: 276 RAELTPGTFTVVF-SAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--RDNGK 332
Query: 179 VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
+ +NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R
Sbjct: 333 YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVE 298
YD SG I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA-AEGEYTREQIE 451
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
AR A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSAL
Sbjct: 452 QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408
D+ SE ++ A+D L + TVLVIAH L T+ A + ++D G++ E R
Sbjct: 512 DTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LZB8 | AB29B_ARATH | No assigned EC number | 0.6784 | 1.0 | 0.6719 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 426 | |||
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-110 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-102 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-101 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-99 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-98 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-90 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-82 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-81 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-80 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-80 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-80 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-78 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-75 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-72 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-71 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-70 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-70 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-69 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-65 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-63 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-62 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-59 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-58 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-57 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-57 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-57 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-54 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-50 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-50 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-47 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 9e-46 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-43 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-43 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-43 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-42 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-42 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-42 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-41 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-41 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-41 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-40 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-40 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-38 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-37 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-37 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-37 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-37 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-37 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-37 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-36 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-36 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-36 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-35 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-35 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-35 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-35 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-35 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-35 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-34 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-34 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-34 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-34 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-34 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-34 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-34 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-33 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-33 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-32 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-32 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-32 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-32 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-31 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-31 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-31 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-31 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-30 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-30 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-30 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-30 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-30 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-29 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-29 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-29 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-29 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-29 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-28 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-28 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-28 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-28 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-28 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-28 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-28 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-27 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-27 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-26 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-26 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-26 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-26 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-26 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-26 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-26 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-25 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-25 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-25 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-25 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-25 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-25 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-25 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 5e-25 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-25 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-25 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-25 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-24 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-24 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-24 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-24 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-24 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-24 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-24 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-24 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-23 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-23 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-23 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-23 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-23 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-23 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-23 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-23 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-23 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-22 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-22 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-22 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-22 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-22 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-22 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-22 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-22 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-22 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-22 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-22 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-22 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-22 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-22 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-22 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-22 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-22 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-22 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-21 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-21 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-21 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-21 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-21 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-21 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-21 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-20 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-20 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-20 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-20 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-20 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-20 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-20 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-20 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-20 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-20 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-20 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-20 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-20 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 9e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-19 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-19 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-19 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-19 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-19 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 5e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-19 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-19 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-19 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-19 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-19 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-19 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-18 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-18 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-18 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-18 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-18 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-18 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-17 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-17 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-17 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-17 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-17 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-17 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-17 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-17 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-16 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-16 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-16 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-16 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-16 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-16 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-16 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-15 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-15 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-15 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-15 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-15 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-15 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-15 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-15 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 9e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-14 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-14 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-14 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-14 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-14 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-13 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-13 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 9e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-11 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-11 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-10 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 8e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-09 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 7e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 6e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-06 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 4e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 3e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 4e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 9e-05 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 1e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 2e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-04 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-04 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 7e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.003 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.003 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.004 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.004 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 0.004 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = e-110
Identities = 172/402 (42%), Positives = 241/402 (59%), Gaps = 6/402 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+ +S L+LI L++P +ALV++ L + RK+S++ ++ L+A L E L I +KA
Sbjct: 147 LFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKA 206
Query: 65 NNAEMCESARFRRLAHSDLCELLKK-RKMKALIPQTVQLIYFGALFILCGGSLLVSGGSF 123
AE E RF L+ R L P + L G + +L G LV GS
Sbjct: 207 FGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSL 266
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +FI L+ ++ PI +G+ + ++ A ERLF+L + +V + PD L
Sbjct: 267 TVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKD 324
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G ++F N+SF Y VL ++ I GE VA++GPSG GKSTL KLLLRLYDP S
Sbjct: 325 TIGSIEFENVSFSY-PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D D+++I LDSLR+ +G+VSQD LFSGT+ ENI E +E +
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR--PDATDEEIEEALKL 441
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
ANA EF+ LP GY+T +G RG +LSGGQRQRLAIARAL +N +LILDEATSALD+ +E
Sbjct: 442 ANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETE 501
Query: 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
L++ A+ +LL T L+IAH L T+ A R+ +LDNG++ E
Sbjct: 502 ALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
|
Length = 567 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = e-102
Identities = 155/403 (38%), Positives = 230/403 (57%), Gaps = 6/403 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+L S L+LI +++P +++++ + +RLR+ISK+ S+ ++ E L VK
Sbjct: 149 LLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKL 208
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSF 123
+ E+ RF +++ + +K ++ QLI AL +L GS
Sbjct: 209 FGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSL 268
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA-VSLD 182
+FIT+++ +I P++ + ++G A E LF L EK +++
Sbjct: 269 TAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLL---DSPPEKDTGTRAIE 325
Query: 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
GDV+F N++F+Y LD ++L I GETVAL+G SG GKSTL L+ R Y+P
Sbjct: 326 RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD 385
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR 302
SG IL+D HD+ + L SLRR V LVSQD+ LF+ T+A NI Y + D +E
Sbjct: 386 SGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR-TEQADRAEIERALA 444
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
A A +FV LP G +T IG G LSGGQRQRLAIARAL +++ +LILDEATSALD+ S
Sbjct: 445 AAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504
Query: 363 ELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
E LV+ A++RL+ T LVIAH L T+ A R+ ++D+G++ E
Sbjct: 505 ERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = e-101
Identities = 164/425 (38%), Positives = 243/425 (57%), Gaps = 14/425 (3%)
Query: 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
M + SP L+ + L +P + L I G R+RK+S++S IA +Y E L AI V
Sbjct: 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTV 210
Query: 63 KANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGG 121
+A E E +RF ++ + +AL+ V ++ FGA+ +L G+ V G
Sbjct: 211 QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAG 270
Query: 122 SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181
+L F+ V + I + + + E ++ A ERL +L + + + +L
Sbjct: 271 KMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL 330
Query: 182 DH-INGDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
+ G+++F ++F Y A LD LNL +R GETVAL+GPSG GKSTL +LLLR Y
Sbjct: 331 PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVE 298
DP SG IL+D D++ + LR + LV QD LF+ +V ENI Y R T E VE
Sbjct: 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATD---EEVE 447
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
AR A+A EF+ LP+GY+T++G RG +LSGGQRQR+AIARA+ +++ +L+LDEATSAL
Sbjct: 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDS 418
D+ SE LV+QA++ L+ T L+IAH L TV+ A R+ ++D G++ H
Sbjct: 508 DAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ-------GTHAE 560
Query: 419 LVSAG 423
L++ G
Sbjct: 561 LIAKG 565
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = e-99
Identities = 125/236 (52%), Positives = 162/236 (68%), Gaps = 9/236 (3%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+F N++F+Y + P VL ++L I AGETVAL+GPSG GKSTL L+ R YD SG IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D HDV++ L SLRR +GLVSQD+ LF+ TVAENI Y E VE AR ANA
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR--PGATREEVEEAARAANAH 118
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
EF+ LP+GY+T IG RG LSGGQRQR+AIARAL ++ +LILDEATSALD+ SE LV+
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 368 QAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
A++RL+ + T VIAH L T+ A R+ +L++GK+ E H+ L++ G
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVER-------GTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 3e-98
Identities = 154/406 (37%), Positives = 225/406 (55%), Gaps = 11/406 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + S L+LI IP L+ LR+ +++ A ++L E + I VKA
Sbjct: 288 MFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKA 347
Query: 65 NNAEMCESARFRRLAHSDLCEL----LKKRKMKALIPQTVQLIY-FGALFILCGGSLLVS 119
AE RFR + L + K K+ ++ L+ ++ IL G++LV
Sbjct: 348 LAAE----PRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVL 403
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
G LV+F + I PI + + + +F+Q + A+ERL D+ + +
Sbjct: 404 EGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLI 463
Query: 180 SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
L + G+++F N+SF+Y + P VL+ L+L I GE VA++G SG GKSTL KLLL LY
Sbjct: 464 HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
P G IL+D D+ +I L SLRR VG V QD LFSG++ ENI + E +
Sbjct: 524 KPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENI--ALGNPEATDEEIIE 581
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A+ A A EF+ LP GY+T +G G++LSGGQRQRLA+ARAL +L+LDEATSALD
Sbjct: 582 AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALD 641
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+E ++ Q + ++L TV++IAH L T+ A R+ +LD GK+ E
Sbjct: 642 PETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687
|
Length = 709 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 9e-90
Identities = 110/220 (50%), Positives = 151/220 (68%), Gaps = 5/220 (2%)
Query: 188 VKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++F N+SF+Y ++P +L L+L I G+TVAL+G SG GKST+ LL R YDP SG
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
IL+D D++++ L LR +GLVSQ+ LF GT+AENI Y E VE A+ AN
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKAN 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+F+ +LP GY+T +G RGS LSGGQ+QR+AIARAL +N +L+LDEATSALD+ SE L
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
V++A+DR + T +VIAH L T+ A + +L NG++ E
Sbjct: 178 VQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 252 bits (647), Expect = 1e-82
Identities = 101/231 (43%), Positives = 150/231 (64%), Gaps = 4/231 (1%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G+++F N++F Y + P VL +N I+ GETVA++GP+G GK+TL LL+R YDP G
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
IL+D D+++I SLR +G+V QD LFSGT+ ENI E V A+ A
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP--NATDEEVIEAAKEAG 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
A +F+ LP GY+T +G G +LS G+RQ LAIARA+ ++ +LILDEATS +D+ +E L
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL-EELNRSTLLGSN 415
+++A+++L+ T ++IAH L T+ A ++ +LD+GK+ EE LL
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 9e-81
Identities = 93/219 (42%), Positives = 141/219 (64%), Gaps = 5/219 (2%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N++F Y P VL ++ I AG+ VA++GPSG GKST+ +LL R YD SG IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANA 306
+D D++ + LDSLRR +G+V QD LF+ T+ NI Y R T ++ A+ A
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEA---AKAAQI 116
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+ + P GY+T +G RG LSGG++QR+AIARA+ +N +L+LDEATSALD+ +E +
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 367 RQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+ A+ + T +VIAH L T++ A ++ +L +G++ E
Sbjct: 177 QAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 1e-80
Identities = 147/420 (35%), Positives = 225/420 (53%), Gaps = 11/420 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M SP L+ + + AL+ ++G LRK + A+ +++L E + I +KA
Sbjct: 273 MFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKA 332
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSF 123
E R+ R + + + + + Q ++LI +L G+ LV GG+
Sbjct: 333 TATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGAL 392
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
LV+F + +P+ + + + +F+Q A+ERL D+ ++ +L
Sbjct: 393 SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP-RSAGLAALPE 451
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
+ G + F NI F+YA + P VL LNL I+ GE + ++GPSG GKSTL KLL RLY P
Sbjct: 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G +LVD D+ LRR +G+V Q+ LFS ++ +NI + E V H A+
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN--PGAPFEHVIHAAKL 569
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A A +F+ LPQGYNT +G +G++LSGGQRQR+AIARAL N +LI DEATSALD SE
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
L+ + + + TV++IAH L TV R+ +L+ G++ E R H+ L++
Sbjct: 630 ALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR-------HEELLALQ 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 2e-80
Identities = 144/415 (34%), Positives = 233/415 (56%), Gaps = 30/415 (7%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LSLI ++ P +++ I + +R R ISK ++ ++ ++L V
Sbjct: 160 MFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLI 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQT-----VQLIYFGAL-FILCGGSL-- 116
+ E+ RF ++++ ++++ MK + + +QLI AL F+L S
Sbjct: 220 FGGQEVETKRFDKVSNR-----MRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPS 274
Query: 117 ---LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVI 173
++ G+ V F +S++ ++ P++ + +F++G A + LF + +
Sbjct: 275 VMDTLTAGTIT----VVF-SSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ--- 326
Query: 174 EKPDAV-SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
EK + ++ GD++F N++F Y L +N I AG+TVAL+G SG GKST+A
Sbjct: 327 EKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA 386
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY--RDLMT 290
LL R YD G IL+D HD+++ L SLR V LVSQ++ LF+ T+A NI Y + +
Sbjct: 387 NLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYS 446
Query: 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350
+ E++E AR A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LI
Sbjct: 447 R---EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503
Query: 351 LDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
LDEATSALD+ SE ++ A+D L + T LVIAH L T+ A + ++++G++ E
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVE 558
|
Length = 582 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 260 bits (665), Expect = 7e-80
Identities = 147/420 (35%), Positives = 221/420 (52%), Gaps = 17/420 (4%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
ML +SP L++++ + +P + L G+R + +S++ ++A + E L + V++
Sbjct: 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRS 355
Query: 65 NNAEMCESARFR-RLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIL----CGGSLLVS 119
AE E++RF+ L L KRK A G L + GG L+++
Sbjct: 356 FAAEEGEASRFKEALEE---TLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLT 412
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
G G +LVSF+ + E ++ + Y+ Q A E++F+ K I +
Sbjct: 413 GKVSSG-NLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN-IPLTGTL 470
Query: 180 SLDHINGDVKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237
+ ++ G ++F ++SF Y N P VL L + GE VAL+GPSG GKST+A LL
Sbjct: 471 APLNLEGLIEFQDVSFSYP-NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529
Query: 238 LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERV 297
LY P G +L+D + L R V LV Q+ LFSG+V ENI Y +T E +
Sbjct: 530 LYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYG--LTDTPDEEI 587
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A+ ANA +F+ P GY+T +G +GS LSGGQ+QR+AIARAL + VLILDEATSA
Sbjct: 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647
Query: 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417
LD+ E L+++ R TVL+IAH L TV A ++ +L G + E+ L +
Sbjct: 648 LDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 1e-78
Identities = 94/215 (43%), Positives = 126/215 (58%), Gaps = 44/215 (20%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+SF Y VL ++L I+ GE VA++GPSG GKSTL KLLLRLYDP SG IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D D++++ L+SLR+++ V QD LFSGT+ ENI
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
LSGGQRQR+AIARAL ++ +LILDEATSALD +E L+
Sbjct: 97 --------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136
Query: 368 QAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402
+A+ L TV+VIAH L T+ A R+ +LD+G+
Sbjct: 137 EALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 235 bits (600), Expect = 2e-75
Identities = 99/236 (41%), Positives = 146/236 (61%), Gaps = 9/236 (3%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F ++ F+Y + P++LD ++L I+ GE V ++G SG GKSTL KL+ R Y P +G +L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
VD HD+ LRR VG+V Q+ LF+ ++ +NI D + MERV A+ A A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALAD--PGMSMERVIEAAKLAGAH 118
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
+F+ LP+GY+T +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 368 QAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
+ + + TV++IAH L TV A R+ +++ G++ E HD L++
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGS-------HDELLAEN 227
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 240 bits (616), Expect = 1e-72
Identities = 135/422 (31%), Positives = 209/422 (49%), Gaps = 47/422 (11%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+ +I L + + IP + L L L +++++S A +A L E L + +KA
Sbjct: 280 IAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKA 339
Query: 65 NNAEMCESARFRR--------LAHSDLCELLKKRKMKAL------IPQTVQ------LIY 104
NAE RF+R LA S L K + L Q +Q ++
Sbjct: 340 LNAE----GRFQRRWEQTVAALARSGL-------KSRFLSNLATNFAQFIQQLVSVAIVV 388
Query: 105 FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164
G I G ++ G C ++S + P+ + ++Q + A++ L
Sbjct: 389 VGVYLISDG---ELTMGGLIACVMLS-----GRALAPLGQLAGLLTRYQQAKTALQSL-- 438
Query: 165 LTKFKSKVIEKPDA---VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALI 221
+ +E+P+ + + G+++F N+SF Y LD ++L IR GE VA+I
Sbjct: 439 -DELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII 497
Query: 222 GPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281
G G GKSTL KLLL LY P G +L+D D++ I LRR++G V QD LF GT+ +
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341
NI D E + A A EFVR P G + IG RG SLSGGQRQ +A+ARA
Sbjct: 558 NIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615
Query: 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401
L ++ +L+LDE TSA+D+RSE + + R L T++++ H + + R+ ++DNG
Sbjct: 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675
Query: 402 KL 403
++
Sbjct: 676 RI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 3e-71
Identities = 115/286 (40%), Positives = 174/286 (60%), Gaps = 15/286 (5%)
Query: 141 PIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDVKFCNISFKYAD 199
P+ +G +Y E +Q +E++FDL +++V + PDA L G V F N+SF Y
Sbjct: 215 PLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP 274
Query: 200 NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259
P++ ++ I G+TVA++G SG GKST+ +LL R YD SG I +D D++++
Sbjct: 275 RRPILNG-ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333
Query: 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM--ERVEHTARTANADEFVRTLPQGY 317
SLRR +G+V QD LF+ T+A NI Y + D E V A A +F+++LP+GY
Sbjct: 334 SLRRAIGIVPQDTVLFNDTIAYNIKY----GRPDATAEEVGAAAEAAQIHDFIQSLPEGY 389
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
+T +G RG LSGG++QR+AIAR + +N +LILDEATSALD+ +E ++ A+ +
Sbjct: 390 DTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR 449
Query: 378 TVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
T LVIAH L T++ A + +LDNG++ E H+ L++AG
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVER-------GTHEELLAAG 488
|
Length = 497 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-70
Identities = 119/300 (39%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 108 LFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTK 167
L IL G+ LV G +V+F+ +I + V N+ P +E F++
Sbjct: 255 LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED 314
Query: 168 FKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGG 227
V + P A+ L + G V+F ++SF Y DN ++ ++ + G+TVA++GP+G G
Sbjct: 315 AVPDVRDPPGAIDLGRVKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAG 373
Query: 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI--GY 285
KSTL LL R++DP SG IL+D D++ + SLRR++ +V QD LF+ ++ +NI G
Sbjct: 374 KSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345
D T +M A A A +F+ P GY+T +G RG LSGG+RQRLAIARAL ++
Sbjct: 434 PD-ATDEEMRA---AAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489
Query: 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+LILDEATSALD +E V+ A+D L+ T +IAH L TV A R+ + DNG++ E
Sbjct: 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549
|
Length = 588 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 220 bits (564), Expect = 3e-70
Identities = 93/218 (42%), Positives = 136/218 (62%), Gaps = 2/218 (0%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G ++F N+SF Y + LD ++L IRAGE VA+IG G GKSTL KLL LY P SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
+L+D D++ + LRR++G V QD+TLF GT+ +NI + D ER+ A A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+FV P G + IG RG LSGGQRQ +A+ARAL + +L+LDE TSA+D SE
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
+++ + +LLG T+++I H + + R+ ++D+G++
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 8e-69
Identities = 100/224 (44%), Positives = 135/224 (60%), Gaps = 5/224 (2%)
Query: 182 DHINGDVKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
DH+ G VKF N++F Y P LVL ++ + GE AL+GPSG GKST+ LL Y
Sbjct: 6 DHLKGIVKFQNVTFAYP-TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
P G +L+D + L V LV Q+ LF+ ++ +NI Y + E V+
Sbjct: 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG--LQSCSFECVKE 122
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A+ A+A F+ L GY+T +G +GS LSGGQ+QR+AIARAL +N VLILDEATSALD
Sbjct: 123 AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
+ SE V+QA+ TVLVIAH L TV A ++ +LD G++
Sbjct: 183 AESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 3e-65
Identities = 133/406 (32%), Positives = 200/406 (49%), Gaps = 32/406 (7%)
Query: 14 LISALVIP-SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCES 72
LI+A +IP M LV G + S++ ++A LS + + L + ++A
Sbjct: 147 LITAPLIPLFMILV----GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATE 202
Query: 73 ARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLV---SGGSFDGCSL 128
R R+ + E +K M L + + L F LV G G
Sbjct: 203 ERIRKDS-----EDFRKATMSVL---RIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGD 254
Query: 129 VSFITSLVFMI------EPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVI---EKPDAV 179
++ L +I +P++ +G ++ GE A ++LF L + EK +
Sbjct: 255 LTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314
Query: 180 SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
+ ++ N+SF+Y D P + D LNL I+AG+ AL+G SG GKSTL LLL
Sbjct: 315 NEP--PIEISLENLSFRYPDGKPALSD-LNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
P G I V+ D++++ ++ R+ + VSQ+ LF+GT+ ENI E +
Sbjct: 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--DASDEEIIA 429
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A EFV P G +T IG G+ LSGGQ QRLA+ARAL +S+L+LDE T+ LD
Sbjct: 430 ALDQAGLLEFVP-KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+ +E ++ QA+ L TVLVI H LE A R+ +LDNG+L E
Sbjct: 489 AETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVE 534
|
Length = 559 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 9e-63
Identities = 84/220 (38%), Positives = 131/220 (59%), Gaps = 3/220 (1%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
GD++F N+S +Y N+P VL ++ I+ GE V ++G +G GKS+L L RL + SG
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
IL+D D+ I L LR + ++ QD LFSGT+ N+ D + E +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVG 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
EFV +LP G +T + G +LS GQRQ L +ARAL + S +L+LDEAT+++D ++ L
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+++ + TVL IAH L+T++ + R+ +LD G++ E
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE 217
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 2e-62
Identities = 121/406 (29%), Positives = 187/406 (46%), Gaps = 36/406 (8%)
Query: 8 ISPVLSLISALVIPS-MALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANN 66
IS ++ L++A +IP M L+ G + +++ +++ LS + + L + +K
Sbjct: 145 ISGLILLLTAPLIPIFMILI----GWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFG 200
Query: 67 AEMCESARFRRLAHSDLCELLKKRKMKAL---IPQTVQLIYFGALFI-----LCGGSLLV 118
++A RR + E ++R M+ L + L F L + G LL
Sbjct: 201 RAKAQAAAIRRSS-----EEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLA 255
Query: 119 SGGSFDGCSLVSFITSLVFMI------EPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV 172
+ T L ++ P++ +G Y+ G A E LF + +
Sbjct: 256 GD--------LDLATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPR- 306
Query: 173 IEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
A ++F +S Y P L ++ + GE VAL+GPSG GKSTL
Sbjct: 307 PLAGKAPVTAAPAPSLEFSGVSVAYPGRRP-ALRPVSFTVPPGERVALVGPSGAGKSTLL 365
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292
LLL DP G I V+ + + DS R + V Q LF+GT+AENI
Sbjct: 366 NLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASD 425
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
+ A DEFV LPQG +T IG G+ LSGGQ QRLA+ARA +++ +L+LD
Sbjct: 426 AE--IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483
Query: 353 EATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398
E T+ LD+ +E V +A+ L TVL++ H L +A R+ +L
Sbjct: 484 EPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-59
Identities = 134/404 (33%), Positives = 211/404 (52%), Gaps = 12/404 (2%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M+TQ IS L+L++ L +P MA++I G++L + K + + +SL+ E L +I
Sbjct: 131 MSTQ---ISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIR 187
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVS 119
+KA E +SA F A + ++ ++ A T+ + I L + GGS +V
Sbjct: 188 MIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
GS L SF+ L MI P+ + +N ++G A R+ + V + + V
Sbjct: 248 NGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPV 307
Query: 180 SLDHINGDVKFCNI-SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
DV NI F Y L+ +N ++ G+ + + GP+G GKSTL L+ R
Sbjct: 308 PEGRGELDV---NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERV 297
+D G I D + ++LDS R + +VSQ LFS TVA NI R T+ + +
Sbjct: 365 FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ---QEI 421
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
EH AR A+ + + LPQGY+T +G RG LSGGQ+QR++IARAL N+ +LILD+A SA
Sbjct: 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481
Query: 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401
+D R+E + + + TV++ AH L + A + ++ +G
Sbjct: 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG 525
|
Length = 569 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 2e-58
Identities = 115/296 (38%), Positives = 172/296 (58%), Gaps = 3/296 (1%)
Query: 110 ILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFK 169
IL G++LV G +++FI +I + + + + +E FDL
Sbjct: 257 ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316
Query: 170 SKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKS 229
+ E DA L ++ G V+F +I+F++A++ V D ++ +AG+TVA++GP+G GK+
Sbjct: 317 FQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFD-VSFEAKAGQTVAIVGPTGAGKT 375
Query: 230 TLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM 289
TL LL R+YDP G IL+D D+ + +SLR+ + V QD LF+ ++ ENI R
Sbjct: 376 TLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI--RLGR 433
Query: 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349
E V A+ A A +F+ GY+T +G RG+ LSGG+RQRLAIARA+ +N+ +L
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493
Query: 350 ILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+LDEATSALD +E V+ A+D L + T +IAH L TV A V LD G+L E
Sbjct: 494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 4e-57
Identities = 129/410 (31%), Positives = 208/410 (50%), Gaps = 24/410 (5%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGER-LRKISKQSHLSIASLSAYLNEVLPAILFVK 63
M S L+L++ + V LG +RK + LS +S +++ I ++
Sbjct: 270 MFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELS-GKISGLTVQLINGISKLR 328
Query: 64 ANNAEMCESARFRRLAHSDLCELLKKRKMK-------ALIPQTVQLIYFGALFILCGGSL 116
AE AR+ +L L ++++ A++P F A L GG+
Sbjct: 329 VAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAG 388
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV-IEK 175
L G S ++F T+ + + P ER + + +V K
Sbjct: 389 LSLG------SFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK 442
Query: 176 PDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
D L +G ++ ++F+Y + PL+LD ++L I GE VA++GPSG GKSTL +LL
Sbjct: 443 TDPGKL---SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL 499
Query: 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME 295
L P SG + D D+ + + ++RR +G+V Q+ L SG++ ENI +T ++
Sbjct: 500 LGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLT---LD 556
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
AR A E +R +P G +T I G +LSGGQRQRL IARAL + +L+ DEAT
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616
Query: 356 SALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
SALD+R++ +V ++++RL T +VIAH L T+ A R+++LD G++ +
Sbjct: 617 SALDNRTQAIVSESLERLKV--TRIVIAHRLSTIRNADRIYVLDAGRVVQ 664
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 7e-57
Identities = 135/439 (30%), Positives = 223/439 (50%), Gaps = 38/439 (8%)
Query: 2 ATQMLVISPVLSLI----SALVIPSMALVIAYLGERLRKISKQS-HLSIASLSAYLNEVL 56
A ML+ PVL+LI +A+ + ++ LV + R++ + + L+ ++S L
Sbjct: 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISG-----L 339
Query: 57 PAILFVKANNAEMCESARFRRLA--HSDLC----ELLKKRKMKALIPQTVQLIYFGALFI 110
+I +KA+ E S F R A + L EL ++ ++P + + + +
Sbjct: 340 QSIETLKASGLE---SDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILV 396
Query: 111 LCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD-LTKFK 169
+ G L V G LV+F + + +EP+ + ++ E + RL D L
Sbjct: 397 V--GGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454
Query: 170 SKVIEKPDAVSLD-----HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPS 224
++E+ +A + ++G V+ NI+F Y+ P +++ +L ++ G+ VAL+G S
Sbjct: 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGS 514
Query: 225 GGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284
G GKST+AKL+ LY P SG IL D + I + L V +V QDI LF GTV +N+
Sbjct: 515 GSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574
Query: 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344
D I + + A + + + P GY+ + G++LSGGQRQRL IARAL +
Sbjct: 575 LWD--PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632
Query: 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404
N S+LILDEATSALD +E ++ + R T +++AH L T+ + +L+ GK+
Sbjct: 633 NPSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVV 690
Query: 405 ELNRSTLLGSNHDSLVSAG 423
+ R T H+ L + G
Sbjct: 691 Q--RGT-----HEELWAVG 702
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 7e-57
Identities = 115/402 (28%), Positives = 206/402 (51%), Gaps = 18/402 (4%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L L+S L IP A++I K++ + + A L++ + E L I +K+ +E
Sbjct: 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAER 356
Query: 72 ----SARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCS 127
+ F + + K + + I +LI + IL G+ LV G
Sbjct: 357 YSKIDSEFGDYLNKSF-KYQKADQGQQAIKAVTKLIL--NVVILWTGAYLVMRGKLTLGQ 413
Query: 128 LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD 187
L++F L + + P++ + + + A RL ++ S+ I K L+++NGD
Sbjct: 414 LITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGD 473
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ ++S+ Y +L ++L I+ ++G SG GKSTLAKLL+ + SG IL
Sbjct: 474 IVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN--IGYRDLMTKIDMERVEHTARTAN 305
++ +++I +LR+ + + Q+ +FSG++ EN +G ++ + + + A
Sbjct: 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE---NVSQDEIWAACEIAE 589
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ + +P GY T + GSS+SGGQ+QR+A+ARAL +S VLILDE+TS LD+ +E
Sbjct: 590 IKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE-- 647
Query: 366 VRQAVDRL--LGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
++ V+ L L T++ +AH L + ++ +LD+GK+ E
Sbjct: 648 -KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-54
Identities = 81/214 (37%), Positives = 110/214 (51%), Gaps = 45/214 (21%)
Query: 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250
N+SF+Y P VL ++ I GE++A+IGPSG GKSTLA+L+L L P SG + +D
Sbjct: 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 251 HDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
D+ + L HVG + QD LFSG++AENI
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LSGGQRQRL +ARALY N +L+LDE S LD E + QA+
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 371 DRL-LGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
L T +VIAH ET+ A R+ +L++G++
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 3e-50
Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 14/317 (4%)
Query: 107 ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMI-------EPIQGVGKAYNEFKQGEPAI 159
A ++ G L ++ G + +I EP+ A+ Q +
Sbjct: 253 AGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAP--GAFQHLGQVIASA 310
Query: 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVA 219
RL D+ K +V ++ N+SF Y L NL + GE VA
Sbjct: 311 RRLNDILDQKPEV--TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVA 368
Query: 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTV 279
++G SG GKSTL +LL +DP G I ++ ++ ++ +LR + +++Q + LFSGT+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Query: 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339
+N+ R E + + ++ + + P G NT +G G LSGG+R+RLA+A
Sbjct: 429 RDNL--RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486
Query: 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399
RAL ++ + +LDE T LD +E V + T+L++ H L + R+ +LD
Sbjct: 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLD 546
Query: 400 NGKL-EELNRSTLLGSN 415
NGK+ EE + LL +N
Sbjct: 547 NGKIIEEGTHAELLANN 563
|
Length = 573 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 4e-50
Identities = 88/267 (32%), Positives = 144/267 (53%), Gaps = 11/267 (4%)
Query: 139 IEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYA 198
I+ G K ++ +Q + L + A+ L G + N++
Sbjct: 274 IDGAIGGWKQFSGARQAYKRLNELLANYPSR------DPAMPLPEPEGHLSVENVTIVPP 327
Query: 199 DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL 258
L ++ ++AGE +A+IGPSG GKSTLA+L++ ++ P SG + +D D++
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 259 DSLRRHVGLVSQDITLFSGTVAENIG-YRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
++ +H+G + QD+ LF GTVAENI + + D E++ A+ A E + LP GY
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGE---NADPEKIIEAAKLAGVHELILRLPDGY 444
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-LGH 376
+T IGP G++LSGGQRQR+A+ARALY + +++LDE S LD E + A+ L
Sbjct: 445 DTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARG 504
Query: 377 HTVLVIAHHLETVMMAKRVFLLDNGKL 403
TV+VI H + ++ +L +G++
Sbjct: 505 ITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 7e-47
Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 3/202 (1%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L ++ ++AGE + +IGPSG GKSTLA+LL+ ++ P SG + +D D++ + L R
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
H+G + QD+ LF GT+AENI + D E+V AR A E + LPQGY+T IG
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-LGHHTVLVI 382
G++LSGGQRQR+A+ARALY + +++LDE S LDS E + A+ TV+VI
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 383 AHHLETVMMAKRVFLLDNGKLE 404
AH + ++ +L +G++
Sbjct: 529 AHRPSALASVDKILVLQDGRIA 550
|
Length = 580 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 9e-46
Identities = 71/201 (35%), Positives = 119/201 (59%), Gaps = 7/201 (3%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LN + AG+ +AL+GPSG GK++L LL + P G + ++ +++ + +S R+H
Sbjct: 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKH 424
Query: 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDM--ERVEHTARTANADEFVRTLPQGYNTHIG 322
+ V Q+ L GT+ +N+ L+ D E+++ A EF+ LPQG +T IG
Sbjct: 425 LSWVGQNPQLPHGTLRDNV----LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVI 382
+ + LS GQ QRLA+ARAL Q +L+LDE T++LD+ SE LV QA++ T L++
Sbjct: 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 383 AHHLETVMMAKRVFLLDNGKL 403
H LE + +++++ +G++
Sbjct: 541 THQLEDLAQWDQIWVMQDGQI 561
|
Length = 588 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-43
Identities = 108/313 (34%), Positives = 165/313 (52%), Gaps = 23/313 (7%)
Query: 102 LIYFGALFILCGGSLLV---SGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158
L F AL ILCG +L + G+ + L +FI+ L + EP+ + + +Q A
Sbjct: 256 LSLFSAL-ILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVA 314
Query: 159 IERLFDLTKFKSKVIEKP------DAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHI 212
ER+F+L ++ P D L +G + N+SF Y D+ VL +NL +
Sbjct: 315 GERVFEL-------MDGPRQQYGNDDRPLQ--SGRIDIDNVSFAYRDDNL-VLQNINLSV 364
Query: 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272
+ VAL+G +G GKSTLA LL+ Y G I +D + ++ LR+ V +V QD
Sbjct: 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDP 424
Query: 273 TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332
+ + T N+ L I E+V T E R+LP G T +G +G++LS GQ
Sbjct: 425 VVLADTFLANV---TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481
Query: 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMA 392
+Q LA+AR L Q +LILDEAT+ +DS +E ++QA+ + H T++VIAH L T++ A
Sbjct: 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEA 541
Query: 393 KRVFLLDNGKLEE 405
+ +L G+ E
Sbjct: 542 DTILVLHRGQAVE 554
|
Length = 592 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 5e-43
Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 26/228 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
+++ Y D L ++L I GE ALIGPSG GKSTL +LL RL D P G +
Sbjct: 5 DLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY-----RDLMTKIDMERVEH 299
L+D D+ ++ +D LRR VG+V Q F G++ +N+ Y + + ERVE
Sbjct: 63 LLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEE 122
Query: 300 TARTAN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
R A DE L LSGGQ+QRL +ARAL VL+LDE TSAL
Sbjct: 123 ALRKAALWDEVKDRL----------HALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
D S + + + L +T++++ H+++ +A R L NG+L E
Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-43
Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 17/218 (7%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+SF Y D LD ++L I+ GE V ++GP+G GKSTL +LL L P SG +LVD
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63
Query: 252 DVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENI--GYRDLMTKIDMERVEHTARTANAD 307
D+ + L LRR VGLV Q D F TV E + G +L + E R A
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG----LPEEEIEERVEEAL 119
Query: 308 EFVRTLP-QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
E V + + +LSGGQ+QR+AIA L + +L+LDE T+ LD +
Sbjct: 120 ELVGLEGLRDRSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 367 RQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGK 402
+ + +L T++++ H L+ ++ +A RV +L++GK
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 4e-42
Identities = 103/340 (30%), Positives = 161/340 (47%), Gaps = 51/340 (15%)
Query: 107 ALFILCGGSLLV------SGGSFDGCSLVSFITSLVFM----IEPIQGVGKAYNEFKQGE 156
AL IL G +V +GG + I VF E + V A+ Q
Sbjct: 249 ALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308
Query: 157 PAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGE 216
+ R+ ++T+ K +V P + + N+SF Y D VL L+L I+AGE
Sbjct: 309 ASARRINEITEQKPEV-TFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGE 367
Query: 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS 276
VAL+G +G GKSTL +LL R +DP G IL++ + + +LR+ + +VSQ + LFS
Sbjct: 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS 427
Query: 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL-----------PQGYNTHIGPRG 325
T+ +N+ L+ A+ + + L +G N +G G
Sbjct: 428 ATLRDNL----LLAA----------PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH----TVLV 381
LSGG+++RL IARAL ++ +L+LDE T LD+ +E + + LL H TVL+
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE----RQILELLAEHAQNKTVLM 529
Query: 382 IAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVS 421
I H L + R+ ++DNG++ E H L++
Sbjct: 530 ITHRLTGLEQFDRICVMDNGQIIEQ-------GTHQELLA 562
|
Length = 574 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 5e-42
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 42/214 (19%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+SF Y + VL L+L ++ GE +AL+G SG GKSTL +LL P G I +D
Sbjct: 5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
V ++ +L + +++Q LF T+ N+G R
Sbjct: 65 PVSDLE-KALSSLISVLNQRPYLFDTTLRNNLGRR------------------------- 98
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
SGG+RQRLA+AR L Q++ +++LDE T LD +E + +
Sbjct: 99 ----------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142
Query: 372 RLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+L T++ I HHL + ++ L+NGK+
Sbjct: 143 EVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 5e-42
Identities = 112/391 (28%), Positives = 182/391 (46%), Gaps = 25/391 (6%)
Query: 11 VLSLISALVIPSMALVIAYLGERL-RKISKQSHLSIASLSAYLNEVLPAILFVKAN---N 66
VLS+ +AL++ + L+ ++ + + ++ + ++A L L L L A +
Sbjct: 150 VLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVAS 209
Query: 67 AEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGA--LFILCGGSLLVSGGSFD 124
+ + A +L ++ + + L+ G L L G V+ G
Sbjct: 210 GALPAALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLA 269
Query: 125 GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK----PDAVS 180
+L + + E + A + + A ER+ ++ V E AV
Sbjct: 270 PVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVG 329
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ ++S Y P VLD ++L + GE VA++GPSG GKSTL L L D
Sbjct: 330 LGKP--TLELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLD 386
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEH 299
PL G + +D V ++ D +RR V + +QD LF TV EN+ R T ++
Sbjct: 387 PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALE 446
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A +++R LP G +T +G G+ LSGG+RQRLA+ARAL ++ +L+LDE T LD
Sbjct: 447 RVGLA---DWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLD 503
Query: 360 --SRSELL--VRQAVDRLLGHHTVLVIAHHL 386
+ ELL + A+ TV++I HHL
Sbjct: 504 AETADELLEDLLAALSGR----TVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-41
Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 21/223 (9%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G+++ N+S +YA ++P VL ++ ++AGE + ++G +G GKSTL L R + G
Sbjct: 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I +D D+ I L+ LR + ++ QD TLFSGT+ N+ D + E + R +
Sbjct: 65 IEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFDEYSDEEIYGALRVSE 121
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
G +LS GQRQ L +ARAL + VL+LDEAT+++D ++ L
Sbjct: 122 G------------------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408
+++ + + T+L IAH L T++ ++ ++D G+++E +
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 3e-41
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N++ KY LD ++ + GE L+GP+G GK+TL K+L L P SG IL
Sbjct: 5 IEVRNLTKKY-GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI----GYRDLMTKIDMERVEHTAR 302
V +DV +RR +G V Q+ +L+ TV EN+ L + ER+E
Sbjct: 64 VLGYDV-VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
++ +LSGG +QRL+IA AL + +LILDE TS LD S
Sbjct: 123 LFGLEDKANKKV-----------RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 363 ELLVRQAVDRLL--GHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403
+ + + L G T+L+ H LE + RV +L++GK+
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215
|
Length = 293 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 3e-41
Identities = 84/222 (37%), Positives = 121/222 (54%), Gaps = 14/222 (6%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+SF+Y L ++L I GE V LIGP+G GKSTL KLL L P SG +L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 248 VDDHDVQNIR-LDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
VD D + + L LR+ VGLV Q D LF TV + + + + E +E R A
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIE--ERVA 120
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
A E V L + + +LSGGQ+QR+AIA L +L+LDE T+ LD +
Sbjct: 121 EALELVG-LEELLDRPP----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 365 LVRQAVDRL--LGHHTVLVIAHHLETVMM-AKRVFLLDNGKL 403
+ + + +L G T++++ H LE V+ A RV +LD+GK+
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 6e-41
Identities = 80/223 (35%), Positives = 116/223 (52%), Gaps = 53/223 (23%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S +Y VL+ ++L+I AGE VAL+GPSG GKSTL + + L +P SG IL
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 248 VDDHDVQNIRLDS--LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
+D D+ ++ + LRR +G+V QD LF TV ENI
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------ 100
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRS 362
LSGGQ+QR+A+ARAL + VL+LDE TSALD +R
Sbjct: 101 -----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137
Query: 363 EL--LVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402
E+ L++ +L TV+++ H L+ +A RV +L +GK
Sbjct: 138 EVRALLKSLQAQL--GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 154 bits (389), Expect = 2e-40
Identities = 104/357 (29%), Positives = 170/357 (47%), Gaps = 62/357 (17%)
Query: 104 YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLF 163
++G I+ S F G S++S + ++ + + + E+ + A L+
Sbjct: 300 WYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLY 359
Query: 164 DLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIG 222
++ K V D L I ++F N+ F Y + + LN + G+T A +G
Sbjct: 360 EIINRKPLVENNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVG 418
Query: 223 PSGGGKSTLAKLLLRLYDPLSGCILVDD-HDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281
SG GKST+ KL+ RLYDP G I+++D H++++I L R +G+VSQD LFS ++
Sbjct: 419 ESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478
Query: 282 NIGYRDLMTKIDMERVEH-----------------------------TARTANADEFVR- 311
NI Y L + D+E + + + T +++E +
Sbjct: 479 NIKY-SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537
Query: 312 --------------------------TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345
LP Y T +G S LSGGQ+QR++IARA+ +N
Sbjct: 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRN 597
Query: 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHT--VLVIAHHLETVMMAKRVFLLDN 400
+LILDEATS+LD++SE LV++ ++ L G+ ++IAH L T+ A +F+L N
Sbjct: 598 PKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 8e-40
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 23/231 (9%)
Query: 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
++ N+S + LD ++L I GE +IG SG GKSTL +L+ L P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 245 CILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHT 300
+ VD D+ + L LR+ +G++ Q L S TV EN+ + + + ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK-- 119
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
R A E V G + + LSGGQ+QR+AIARAL N +L+ DEATSALD
Sbjct: 120 QRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 361 RS-----ELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
+ ELL ++R LG T+++I H +E V + RV +LD G+L E
Sbjct: 175 ETTQSILELLKD--INRELG-LTIVLITHEMEVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 150 bits (379), Expect = 4e-39
Identities = 116/413 (28%), Positives = 201/413 (48%), Gaps = 41/413 (9%)
Query: 15 ISALVIPSMALVIAYLGERL-----RKISKQSHLSIASLSAYLNEVLPAILFVKANNAEM 69
I+A++IP + L+ ++ +R R++ + +S + + ++ NE L + ++A
Sbjct: 1106 IAAVIIPPLGLLYFFV-QRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFE--- 1161
Query: 70 CESARFRRLAHSDLCELLKKRKMKALIPQTVQ--------------LIYFGALFILCGGS 115
E RF + + E KA P V ++ F ALF +
Sbjct: 1162 -EQERFIHQSDLKVDE-----NQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRH 1215
Query: 116 LLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK---V 172
L +G G S VS+ + F + + + +E + A+ERL + ++ + +
Sbjct: 1216 SLSAG--LVGLS-VSYSLQVTFYLNWLV---RMSSEMETNIVAVERLKEYSETEKEAPWQ 1269
Query: 173 IEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
I++ S G V+F N +Y +++ LVL +N+ I GE V ++G +G GKS+L
Sbjct: 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT 1329
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292
L R+ + G I++D ++ I L LR + ++ QD LFSG++ N+ D ++
Sbjct: 1330 LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQY 1386
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
E V A+ FV LP + G +LS GQRQ + +ARAL + + +L+LD
Sbjct: 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446
Query: 353 EATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
EAT+A+D ++ L++ + TVL IAH L T+M RV +LD G++ E
Sbjct: 1447 EATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 5e-38
Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 19/224 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ +S Y LD L+L + GE +AL+GPSG GK+TL +L+ L P SG IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+D DV + RR++G+V QD LF TVAENI + + + + E AR
Sbjct: 59 IDGRDVTG--VPPERRNIGMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRARVREL 114
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL 364
E V LSGGQ+QR+A+ARAL + S+L+LDE SALD R EL
Sbjct: 115 LELVGLEGLLNR-----YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 365 LVRQAVDRLLGHH--TVLVIAHHL-ETVMMAKRVFLLDNGKLEE 405
R+ + L T + + H E + +A R+ +++ G++ +
Sbjct: 170 --REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 1e-37
Identities = 70/216 (32%), Positives = 100/216 (46%), Gaps = 61/216 (28%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248
+ N+SF+Y LD ++L ++AGE VAL+GP+G GKSTL + + L P SG IL+
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
D D+ + L+ LRR +G
Sbjct: 59 DGKDIAKLPLEELRRRIGY----------------------------------------- 77
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
+PQ LSGGQRQR+A+ARAL N +L+LDE TS LD S + +
Sbjct: 78 ----VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121
Query: 369 AVDRLL-GHHTVLVIAHHLETVMMAK-RVFLLDNGK 402
+ L TV+++ H E +A RV +L +GK
Sbjct: 122 LLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 4e-37
Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 24/226 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S + D +D ++L I+ GE V L+GPSG GK+TL +++ P SG IL
Sbjct: 6 LEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY-----RDLMTKIDMERVEHTA 301
+D D+ + + +R +G+V Q LF TV EN+ + + L RVE
Sbjct: 64 LDGEDITD--VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ F P LSGGQ+QR+A+ARAL VL+LDE SALD++
Sbjct: 122 ELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 362 SELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404
+R+ + L T + + H E + M+ R+ ++++G++E
Sbjct: 171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 7e-37
Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 30/235 (12%)
Query: 188 VKFCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++ N+S + D V L ++L + GE +IG SG GKSTL + + L P SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 246 ILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERV 297
+LVD D+ + L RR +G++ Q L S TV EN+ + + ERV
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
++ P + LSGGQ+QR+ IARAL N VL+ DEATSA
Sbjct: 122 LELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 358 LDSRS-----ELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406
LD + LL ++R LG T+++I H +E V + RV +++ G++ E
Sbjct: 171 LDPETTQSILALLRD--INRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 7e-37
Identities = 75/216 (34%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NISF Y +LD L+L + AGE +AL G +G GK+TLAK+L L SG IL++
Sbjct: 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 252 DVQNIRLDSLRRHVGLVSQDIT--LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
++ R+ +G V QD+ LF+ +V E + E+ E + +
Sbjct: 63 PIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
P SLSGGQ+QRLAIA AL +LI DE TS LD ++ V +
Sbjct: 120 KERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 370 VDRLLGH-HTVLVIAHHLETVMM-AKRVFLLDNGKL 403
+ L V+VI H E + RV LL NG +
Sbjct: 169 IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 7e-37
Identities = 70/219 (31%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 192 NISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+S Y L+ ++L + GE VAL+GPSG GKSTL +++ L P SG +LVD
Sbjct: 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVD 64
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTA 304
V G V Q L TV +N+ + + ER E
Sbjct: 65 GEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV 119
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
F P LSGG RQR+A+ARAL + VL+LDE SALD+ +
Sbjct: 120 GLSGFENAYP-----------HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 365 LVRQAVDRLLGHH--TVLVIAHHL-ETVMMAKRVFLLDN 400
+++ + + TVL++ H + E V +A RV +L
Sbjct: 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 7e-37
Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 25/222 (11%)
Query: 188 VKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+ + SF + L +NL + GE VA++GP G GKS+L LL + LSG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI--GYRDLMTKIDMERVEHTAR 302
+ S+ + VSQ+ + +GT+ ENI G D ER E +
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKP-----FDEERYEKVIK 102
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR- 361
+ + LP G T IG +G +LSGGQ+QR+++ARA+Y ++ + +LD+ SA+D+
Sbjct: 103 ACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 362 SELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402
+ + LL + T +++ H L+ + A ++ +LDNG+
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-36
Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G +KF ++ +Y +P VL L+ I E V ++G +G GKS++ L R+ + G
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-ERVEHTARTA 304
IL+D D+ L LR+ +G++ Q LFSGTV N+ + D+ E +E A
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLER----A 1351
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+ + +R G + + G + S GQRQ L++ARAL + S +L+LDEAT+A+D R++
Sbjct: 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
Query: 365 LVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVS 421
L+++ + T+L+IAH L T++ R+ +LD G++ E + L SN S S
Sbjct: 1412 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFS 1468
|
Length = 1622 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-36
Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 15/240 (6%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N++ +Y V + LNL I GE + LIGPSG GK+T K++ RL +P SG I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+D D++ LRR +G V Q I LF TV ENI + K E++ R
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR--ERADEL 117
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL 364
V P + LSGGQ+QR+ +ARAL + +L++DE ALD +R +L
Sbjct: 118 LALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 365 LVRQAVDRL--LGHHTVLVIAHHL-ETVMMAKRVFLLDNGKLEEL-NRSTLLGSNHDSLV 420
++ RL T++ + H + E +A R+ ++ NG++ ++ +L S + V
Sbjct: 175 --QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFV 232
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-36
Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 27/225 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+SF Y +LD L+ I GE ++GP+G GKSTL K L L P SG +L+D
Sbjct: 7 NLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAE--------NIGYRDLMTKIDMERVEHTAR 302
D+ ++ L + + V Q + G TV E ++G +K D E VE
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 303 TANADEFV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ R + LSGG+RQR+ IARAL Q + +L+LDE TS LD
Sbjct: 125 LLGLEHLADRPV------------DELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
Query: 362 SELLVRQAVDRLLGHH--TVLVIAHHLETVMM-AKRVFLLDNGKL 403
++ V + + L TV+++ H L A + LL +GK+
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-36
Identities = 79/213 (37%), Positives = 106/213 (49%), Gaps = 21/213 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN---IRLDS 260
L +NL I AGE VA++GPSG GKSTL LL L P SG +L++ D+ L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 261 LRR-HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
LRR +G V Q+ L TV EN+ +L I + R A V L
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENV---ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-- 376
+ S LSGGQ+QR+AIARAL N +++ DE T LDS++ + V LL
Sbjct: 137 KK---KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT----AKEVLELLRELN 189
Query: 377 ----HTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
T++++ H E A RV L +GK+EE
Sbjct: 190 KERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-36
Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 31/233 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S +Y + +D +NL I GE + LIGPSG GK+T K++ RL +P SG IL
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA-- 304
+D D+ ++ LRR +G V Q I LF TVAENI + D ER++ A
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 305 ----NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
+ E+ P LSGGQ+QR+ +ARAL + +L++DE ALD
Sbjct: 120 LVGLDPSEYADRYP-----------HELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
Query: 360 -SRSELLVRQ----AVDRLLGHHTVLVIAHHL-ETVMMAKRVFLLDNGKLEEL 406
+R +L Q + + LG V V H + E + +A R+ ++D G++ +
Sbjct: 169 ITRKQL---QEEIKELQKELGKTIVFV-THDIDEALKLADRIAVMDAGEIVQY 217
|
Length = 309 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-35
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 27/228 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K N+SF Y ++ L ++ I GE VA++G +G GKST++K+L L P SG I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--------RDLMTKIDMERV 297
+D + L +R+ +G++ Q D TV ++I + M I +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI----I 123
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ A+ ++++ PQ +LSGGQ+QR+AIA L N ++I DE+TS
Sbjct: 124 DDLAKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSM 172
Query: 358 LDSRSELLVRQAVDRL--LGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
LD + + +++ + L T++ I H ++ ++A +V + GKL
Sbjct: 173 LDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKL 220
|
Length = 271 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 4e-35
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 49/215 (22%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S +Y LD ++L + GE L+GP+G GK+TL K++L L P SG I V
Sbjct: 5 NLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
D++ + ++R +G + ++ +L+ TV EN+
Sbjct: 63 DIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL--------------------------- 94
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LSGG +QRLA+A+AL + +LILDE TS LD S + +
Sbjct: 95 ----------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138
Query: 371 DRLLGH-HTVLVIAHHLETV-MMAKRVFLLDNGKL 403
L T+L+ +H LE + RV +L+NG++
Sbjct: 139 RELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-35
Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 30/231 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y + L +NL I + ALIGPSG GKSTL + L R+ D + G +
Sbjct: 6 NLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV 63
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEH 299
L D D+ + ++D LRR VG+V Q F ++ +NI Y + K ++ E VE
Sbjct: 64 LFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEE 123
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ + A L + LSGGQ+QRL IARAL VL+LDE TSALD
Sbjct: 124 SLKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV-----FLLDNGKLEE 405
+ + + + L +T++++ H+++ A R+ F D G+L E
Sbjct: 177 PIATGKIEELIQELKKKYTIVIVTHNMQ---QAARISDRTAFFYD-GELVE 223
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 5e-35
Identities = 72/215 (33%), Positives = 99/215 (46%), Gaps = 45/215 (20%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S Y VLD L+L I AGE V ++GP+G GKSTL K L L P SG IL+D
Sbjct: 4 NLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
D+ ++ L R + V Q E +G L AD
Sbjct: 62 DLASLSPKELARKIAYVPQ--------ALELLGLAHL-----------------ADRPFN 96
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
LSGG+RQR+ +ARAL Q +L+LDE TS LD ++ + + +
Sbjct: 97 E---------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 372 RLLGHH--TVLVIAHHLE-TVMMAKRVFLLDNGKL 403
RL TV+++ H L A RV LL +G++
Sbjct: 142 RLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 6e-35
Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 31/231 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
+++ Y D L +NL I + ALIGPSG GKSTL + L R+ D + G +
Sbjct: 12 DLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV 69
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMERVEHT 300
L+D ++ + ++D LRR VG+V Q F ++ +N+ Y + K E VE +
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 301 ARTAN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ A DE L + LSGGQ+QRL IARAL VL++DE TSALD
Sbjct: 130 LKKAALWDEVKDRLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV-----FLLDNGKLEE 405
S L + + + L +T++++ H+++ A RV F G+L E
Sbjct: 182 PISTLKIEELITELKKKYTIVIVTHNMQ---QAARVSDYTAFFYL-GELVE 228
|
Length = 253 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 7e-35
Identities = 84/228 (36%), Positives = 116/228 (50%), Gaps = 31/228 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+ISF+Y D L ++ + GE VA++G +G GKSTLAKLL L P +G I V
Sbjct: 10 HISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69
Query: 252 DVQNIRLDSLRRHVGLVSQ--DITLFSGTVA-------ENIGY-RDLMTKIDMERVEHTA 301
+ + +RR VG+V Q D TV ENIG R+ M +ERV+
Sbjct: 70 VLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM----VERVDQAL 125
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-- 359
R ++F+ P LSGGQ+QR+AIA L ++ILDEATS LD
Sbjct: 126 RQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 360 SRSELL--VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
R E+L VRQ ++ TVL I H L+ A RV +++ G++ E
Sbjct: 175 GRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILE 220
|
Length = 279 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 8e-35
Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 27/248 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+ + VL +NL I GE V L+GPSG GKSTL +++ L +P SG IL
Sbjct: 4 LELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTAR 302
+D DV + L +R + +V Q+ L+ TV ENI + + + RV+ A+
Sbjct: 62 IDGRDVTD--LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ + P LSGGQRQR+A+ARAL + V +LDE S LD++
Sbjct: 120 LLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL 168
Query: 363 ELLVR---QAVDRLLGHHTVLVIAHH--LETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417
+L+R + + LG T + H +E + +A R+ ++++G+++++ L
Sbjct: 169 RVLMRSEIKKLHERLG--TTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226
Query: 418 SLVSAGLV 425
+L AG +
Sbjct: 227 NLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-34
Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 23/226 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+++F +S Y+ +L +++ G ++GPSG GKSTL KL+ RL DP G I
Sbjct: 3 EIEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D D++ I + LRR +G+V Q LF GTV +NI Y ++ + +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---------KGEKNVDV 111
Query: 307 DEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ ++ + G N R +LSGG+ QR++IAR L N VL+LDE TSALD S +
Sbjct: 112 EYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 366 VRQAVDRLLGHH--TVLVIAHHLETVMMAKRV----FLLDNGKLEE 405
+ + + +L TV+ I H++E AKR+ L+ G L E
Sbjct: 170 IEELIVKLKNKMNLTVIWITHNME---QAKRIGDYTAFLNKGILVE 212
|
Length = 241 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-34
Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 3/239 (1%)
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
+ G++K ++ +Y +N+ VL + +I+ G+ V + G +G GKS+L+ R+ D
Sbjct: 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD 75
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G I++D D+ + L +LR + ++ QD LFSG++ N+ D K +R+
Sbjct: 76 GKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL---DPECKCTDDRLWEALEI 132
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A V++LP G + + G + S GQRQ +ARA + SS+LI+DEAT+++D +E
Sbjct: 133 AQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE 192
Query: 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSA 422
++++ V TV+ IAH + T++ A V +L G L E + L + D + ++
Sbjct: 193 NILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 2e-34
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 22/224 (9%)
Query: 192 NISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+S Y L ++L I GE VA++GPSG GKSTL +L L P SG + VD
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64
Query: 250 DHDVQNI---RLDSLRR-HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
D+ + L + RR H+G V Q L T EN+ + + V R
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV-----ELPLLLAGVPKKERRE 119
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-- 362
A+E + + G + S LSGGQ+QR+AIARAL + +++ DE T LDS +
Sbjct: 120 RAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 363 ---ELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
ELL + T++V+ H E A R+ L +GK+
Sbjct: 178 EVMELLRELNKEA---GTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-34
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 31/226 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDS 260
VL ++L +R GE +A+IGPSG GKSTL +L++ L P SG +L+D D+ L
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGY------RDLMTKIDMERVEHTARTANADEFVRTL 313
LRR +G++ Q LF TV EN+ + R +I E V
Sbjct: 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR-EIVLEKLEAVGLRGAEDLY 133
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
P + LSGG ++R+A+ARAL + +L+ DE T+ LD + ++ + L
Sbjct: 134 P-----------AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182
Query: 374 --LGHHTVLVIAHHLETVM-MAKRVFLLDNGKL------EELNRST 410
T +++ H L+T +A R+ +L +GK+ EEL S
Sbjct: 183 KKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 5e-34
Identities = 90/295 (30%), Positives = 149/295 (50%), Gaps = 12/295 (4%)
Query: 127 SLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL---FDLTKFKSKVIEKPDAVSLDH 183
S IT+L+ + ++ KA N ++ER+ DL + +IE VS
Sbjct: 1177 SYTLNITTLLSGV--LRQASKAENSLN----SVERVGNYIDLPSEATAIIENNRPVSGWP 1230
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G +KF ++ +Y +P VL L+ + E V ++G +G GKS++ L R+ +
Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G I++DD DV L LRR + ++ Q LFSGTV NI D+ A
Sbjct: 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHI 1350
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ + P G + + G + S GQRQ L++ARAL + S +L+LDEAT+++D R++
Sbjct: 1351 KDV---IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
Query: 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDS 418
L+++ + T+LVIAH L T++ ++ +L +G++ E + L S S
Sbjct: 1408 SLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTS 1462
|
Length = 1495 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-34
Identities = 82/229 (35%), Positives = 113/229 (49%), Gaps = 28/229 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S Y L ++ HI GE V L GPSG GKSTL KL+ P G IL
Sbjct: 2 IRFENVSKAYP-GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 248 VDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTART 303
V+ HD+ ++ + LRR +G+V QD L TV EN+ + I E R
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRRRV 118
Query: 304 ANADEFV------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + V R LP S LSGG++QR+AIARA+ +VL+ DE T
Sbjct: 119 SEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 358 LDSRSELLVRQAVDRL--LGHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403
LD + + + + LG TVL+ H LE V M RV L++G+L
Sbjct: 168 LDPDLSWEIMRLFEEINRLG-TTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 9e-34
Identities = 77/231 (33%), Positives = 109/231 (47%), Gaps = 25/231 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++SF LD ++ I+ GET+ L+G SG GKSTLA+ +L L P SG I+ D
Sbjct: 8 SVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK 67
Query: 252 DVQNI---RLDSLRRHVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTART 303
D+ + R+ + +V QD S T+ E I + + + +
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQI--AEPLRIHGKLSKKEARKE 123
Query: 304 ANADEFVR-TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
A V LP+ + LSGGQRQR+AIARAL N +LI DE TSALD
Sbjct: 124 AVLLLLVGVGLPE---EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 363 -----ELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELN 407
+LL + + L T+L I H L V +A RV ++ GK+ E
Sbjct: 181 QAQILDLLKKLQEELGL---TLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-33
Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 38/235 (16%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++ + D ++LD ++L + GE +A++G SG GKSTL +L+L L P G IL
Sbjct: 9 IEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 248 VDDHDVQNI---RLDSLRRHVGLVSQDITLFSG-TVAENIGY---------RDLMTKIDM 294
+D D+ + L +R+ +G++ Q LFS TV EN+ + L+ ++ +
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 295 ERVEHTA-RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
++E R A AD + P S LSGG R+R+A+ARA+ + +L LDE
Sbjct: 127 MKLELVGLRGAAADLY----P-----------SELSGGMRKRVALARAIALDPELLFLDE 171
Query: 354 ATSALDSRS----ELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
TS LD S + L+R+ D L TV+++ H L++++ +A RV +L +GK+
Sbjct: 172 PTSGLDPISAGVIDELIRELNDALGL--TVIMVTHDLDSLLTIADRVAVLADGKV 224
|
Length = 263 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-33
Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL+ +NL + GE VA++GPSG GKSTL +L+ L P SG +L+D +
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD-----GRPVTGPGP 72
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+G V Q+ L TV +N+ + + E R E V +
Sbjct: 73 DIGYVFQEDALLPWLTVLDNVAL--GLELRGKSKAEARERAKELLELV---------GLA 121
Query: 323 PRGSS----LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH- 377
LSGG RQR+AIARAL +L+LDE ALD+ + ++ + RL
Sbjct: 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR 181
Query: 378 -TVLVIAHHL-ETVMMAKRVFLLDNG 401
TVL++ H + E V +A RV +L N
Sbjct: 182 KTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 6e-33
Identities = 80/218 (36%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--RLD 259
+D ++ +R GET+ L+G SG GKSTLA++L L P SG I+ D D+ L
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 260 SLRRHVGLVSQDITLFS----GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
LRR + +V QD S TV + + L E AR A E V LP
Sbjct: 364 RLRRRIQMVFQD-PYSSLNPRMTVGDILAEP-LRIHGGGSGAERRARVAELLELVG-LPP 420
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL- 374
+ LSGGQRQR+AIARAL +LILDE SALD + V+ V LL
Sbjct: 421 E---FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD----VSVQAQVLNLLK 473
Query: 375 -----GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEEL 406
T L I+H L V +A RV ++ +G++ E
Sbjct: 474 DLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511
|
Length = 539 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-32
Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 31/231 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S Y + LD ++L I+ GE L+GPSG GK+TL +L+ P SG IL
Sbjct: 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTAR 302
+D D+ N L +R V V Q+ LF TV ENI + + K+ ERV
Sbjct: 59 LDGKDITN--LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS-- 360
+ + P S LSGGQ+QR+AIARAL VL+LDE ALD
Sbjct: 117 LVQLEGYANRKP-----------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL 165
Query: 361 RSELLVRQAVDRLLGHH----TVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406
R ++ + + RL T + + H E + M+ R+ +++ GK++++
Sbjct: 166 RKDMQLE--LKRL--QKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-32
Identities = 81/235 (34%), Positives = 113/235 (48%), Gaps = 38/235 (16%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S + D VL ++L + GE V +IGPSG GKSTL + L L +P SG I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 248 VDDHDV-QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTAR- 302
VD DV + LRR VG+V Q LF TV EN+ + K+ A
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTL-APVKVKKLSKAEAREKALE 119
Query: 303 -------TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
AD + P + LSGGQ+QR+AIARAL + V++ DE T
Sbjct: 120 LLEKVGLADKADAY----P-----------AQLSGGQQQRVAIARALAMDPKVMLFDEPT 164
Query: 356 SALD--SRSELLVRQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
SALD E+L V + L T++++ H + +A RV +D GK+ E
Sbjct: 165 SALDPELVGEVL---DVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216
|
Length = 240 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-32
Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 38/229 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ Y + VL+ ++L + GE ALIGP+G GKSTL K +L L P SG I +
Sbjct: 9 NLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG- 65
Query: 252 DVQNIRLDSLRRHVGLVSQDITL---FSGTVAE--------NIGYRDLMTKIDMERVEHT 300
+ +R R +G V Q ++ F TV + G+ + K D E+V+
Sbjct: 66 --KPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEA 123
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
++ + IG LSGGQ+QR+ +ARAL QN +L+LDE + +D
Sbjct: 124 LERVGMEDLR-------DRQIG----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 361 RSELLVRQAVDRLLGH-----HTVLVIAHHLETVM-MAKRVFLLDNGKL 403
+ + + LL TVL++ H L VM RV L N L
Sbjct: 173 AGQ----KEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHL 216
|
Length = 254 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-32
Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 37/236 (15%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248
+ N+S Y + L ++L I GE VALIGPSG GKSTL + L L +P SG +L+
Sbjct: 2 EVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 249 DDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENI-----GYR-------DLMTKI 292
D D+ ++ L LRR +G++ Q L +V EN+ G R L K
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
+ +R + R LSGGQ+QR+AIARAL Q +++ D
Sbjct: 121 EKQRALAALERVGLLDKAYQ-----------RADQLSGGQQQRVAIARALMQQPKLILAD 169
Query: 353 EATSALDSRS-----ELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402
E ++LD S +LL R + + TV+V H ++ A R+ L +G+
Sbjct: 170 EPVASLDPASSRQVMDLLKRINREEGI---TVIVSLHQVDLAREYADRIVGLKDGR 222
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 76/216 (35%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD ++L I +GE VAL+GPSG GK+TL +L+ L P SG IL D + R+
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT--DVPVQERN 75
Query: 265 VGLVSQDITLFSG-TVAENIGY---------RDLMTKIDMERVEHTARTANADEFVRTLP 314
VG V Q LF TV +N+ + R +I +V + D P
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-AKVHELLKLVQLDWLADRYP 134
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--LVRQAV 370
+ LSGGQRQR+A+ARAL VL+LDE ALD+ R EL +R+
Sbjct: 135 -----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 371 DRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
D L H T + + H E + +A RV +++ G++E+
Sbjct: 184 DEL--HVTTVFVTHDQEEALEVADRVVVMNKGRIEQ 217
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 19/224 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+ + D VL ++L ++ GE V +IGPSG GKSTL + + L +P SG I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 248 VDDHDVQN--IRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
+D + + ++ LR+ VG+V Q LF TV ENI + M + E R
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGMSKAEAEERAL 117
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
E V + + LSGGQ+QR+AIARAL N V++ DE TSALD
Sbjct: 118 ELLEKVGLADK-----ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE--- 169
Query: 365 LVRQAVD--RLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKL 403
LV + +D + L T++V+ H + +A RV +D+G++
Sbjct: 170 LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 34/231 (14%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD 259
L ++NL I + ALIGPSG GKST + L R+ D + +L+D D+ +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERVEHTARTANA-DEF 309
LR+ VG+V Q F ++ +N+ Y +D K+D E VE + + A DE
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD-KKKLD-EIVEKSLKGAALWDEV 136
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
L + LSGGQ+QRL IARAL VL++DE TSALD S L + +
Sbjct: 137 KDRLKKS--------ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 370 VDRLLGHHTVLVIAHHLETVMMAKRV-----FLLDNGKLEELNRSTLLGSN 415
+ L +T++++ H+++ A R+ F L NG++ E + L +N
Sbjct: 189 IQELKKDYTIVIVTHNMQ---QASRISDKTAFFL-NGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 5e-31
Identities = 81/247 (32%), Positives = 111/247 (44%), Gaps = 27/247 (10%)
Query: 192 NISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+S Y L+ ++L I GET+ ++G SG GKSTLA+LL L P SG IL+D
Sbjct: 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67
Query: 250 DHDVQN-IRLDSLRRHVGLVSQDITLF---SGTVAENI--GYRDLMTKIDMERVEHTART 303
+ R + R V +V QD TV + R +R+
Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ 127
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
R LSGGQRQR+AIARAL +LILDE TSALD +
Sbjct: 128 VGLPPSFLDR----------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 364 -----LLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417
LL+ +R L T L I+H L V M R+ ++DNG++ E+ + L S+
Sbjct: 178 AQILNLLLELKKERGL---TYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234
Query: 418 SLVSAGL 424
+ L
Sbjct: 235 HPYTREL 241
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 6e-31
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 21/211 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD LNL I GE V L+GPSG GK+T +++ L +P SG I + DV + L R
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTD--LPPKDR 72
Query: 264 HVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
+ +V Q+ L+ TV +NI + R + ERV A + + P
Sbjct: 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---- 128
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL---LG 375
LSGGQRQR+A+ RA+ + V ++DE S LD++ + +R + RL LG
Sbjct: 129 -------KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG 181
Query: 376 HHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406
T+ V +E + MA R+ ++++G+++++
Sbjct: 182 TTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 79/217 (36%), Positives = 116/217 (53%), Gaps = 30/217 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD---HDVQNIRLDS 260
LD ++L I++GE VAL+GPSG GKSTL +++ L P +G I ++ DV N+
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--V 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGY-----RDLMTKIDM-ERVEHTARTANADEFVRTL 313
R VG V Q LF TVA+NI + ++ ++ ++ RVE R +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--LVRQA 369
P + LSGGQRQR+A+ARAL VL+LDE ALD+ R EL +R+
Sbjct: 135 P-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 370 VDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
DRL T + + H E + +A RV +L+ G++E+
Sbjct: 184 HDRL--GVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218
|
Length = 345 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 22/230 (9%)
Query: 188 VKFCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++ NIS + + L+ ++LHI AGE +IG SG GKSTL + + L P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 246 ILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKID-MERVEHT 300
+LVD D+ + L RR +G++ Q L S TV +N+ L ++ + E
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVA---LPLELAGTPKAEIK 118
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
AR E V G + + LSGGQ+QR+AIARAL N VL+ DEATSALD
Sbjct: 119 ARVTELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 360 --SRSEL-LVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
+RS L L++ ++R LG T+++I H ++ V + RV ++D G+L E
Sbjct: 174 ATTRSILELLKD-INRELG-LTIVLITHEMDVVKRICDRVAVIDAGRLVE 221
|
Length = 343 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-30
Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 31/246 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S Y L +NL I GE VA+IGPSG GKSTL + L L DP SG IL
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 248 VDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENI-----GYRDLMTKI-DMERV 297
+ + ++ L LRR +G++ Q L +V EN+ GY + +
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E A+ +A E V L + Y R S+LSGGQ+QR+AIARAL Q +++ DE ++
Sbjct: 123 EDKAQALDALERVGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 358 LDSRS-----ELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL------EE 405
LD S ++L + + TV+V H ++ A R+ L G++ E
Sbjct: 178 LDPESAKKVMDILKDINQEDGI---TVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234
Query: 406 LNRSTL 411
L L
Sbjct: 235 LTDEAL 240
|
Length = 258 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-30
Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 23/209 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCI 246
N++F Y L +NL I + A IGPSG GKSTL + R+Y+ P G I
Sbjct: 18 NLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEH 299
L+D ++ + D LR VG+V Q T F ++ +NI + + +++ +M ERVE
Sbjct: 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEW 135
Query: 300 TARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A +E L Q G SLSGGQ+QRL IAR + VL+LDE SAL
Sbjct: 136 ALTKAALWNEVKDKLHQS--------GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 187
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLE 387
D S + + + L +TV+++ H+++
Sbjct: 188 DPISTGRIEELITELKQDYTVVIVTHNMQ 216
|
Length = 260 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-30
Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 18/213 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDS 260
L +NL+I GE VA+IGPSG GKSTL + + RL +P SG IL++ D+ +R L
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76
Query: 261 LRRHVGLVSQDITLFSG-TVAENI-----GYRDLMTKI-DMERVEHTARTANADEFVRTL 313
LRR +G++ Q L TV EN+ GY+ + E R +A E V
Sbjct: 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA 136
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ Y R LSGGQ+QR+AIARAL Q +++ DE ++LD ++ V + R+
Sbjct: 137 DKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRI 191
Query: 374 LGHH--TVLVIAHHLETVM-MAKRVFLLDNGKL 403
TV++ H ++ A R+ L G++
Sbjct: 192 NKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 9e-30
Identities = 82/231 (35%), Positives = 115/231 (49%), Gaps = 32/231 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N++ Y N LD +N+ I AGE V L+GPSG GKSTL KL+ + P SG I
Sbjct: 1 IEFINVTKTYP-NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 248 VDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTART 303
V+ DV ++R + LRR +G+V QD L V EN+ + + + E R
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRKRV 117
Query: 304 ANADEFV------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A E V R LP LSGG++QR+AIARA+ + ++LI DE T
Sbjct: 118 PAALELVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 358 LDSRSELLVRQAVDRLLGHH----TVLVIAHHLETV-MMAKRVFLLDNGKL 403
LD + + ++ L + TV+V H E V RV L+ GKL
Sbjct: 167 LDPDT---TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 122 bits (306), Expect = 1e-29
Identities = 64/163 (39%), Positives = 104/163 (63%), Gaps = 10/163 (6%)
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTA 301
SG IL+D D+ + L LR +VSQ+ LF+ ++ ENI + ++ T+ D++R
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA---C 1332
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A DEF+ +LP Y+T++GP G SLSGGQ+QR+AIARAL + +L+LDEATS+LDS
Sbjct: 1333 KFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392
Query: 362 SELLVRQAV----DRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400
SE L+ + + D+ T++ IAH + ++ + ++ + +N
Sbjct: 1393 SEKLIEKTIVDIKDK--ADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-29
Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S Y + L ++LHIR GE + L GPSG GK+TL KLL P G +
Sbjct: 2 IEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 248 VDDHDV---QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY-----RDLMTKIDMERVE 298
+ DV + +L LRR +G+V QD L TV EN+ +I RV
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-RRVG 119
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
R + P+ LSGG++QR+AIARA+ + +L+ DE T L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVM--MAKRVFLLDNGK 402
D + + RL T +++A H +++ +A RV +LD+G+
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-29
Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 35/230 (15%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+ ++ F Y ++P+ D L + AGE VA++GPSG GKSTL L+ P SG I
Sbjct: 1 MLALDDVRFSY-GHLPMRFD---LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-------MTKIDMERVE 298
L++ D R V ++ Q+ LF+ TVA+NIG L + E+VE
Sbjct: 57 LINGVDH--TASPPAERPVSMLFQENNLFAHLTVAQNIG---LGLSPGLKLNAEQREKVE 111
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A F++ LP LSGGQRQR+A+AR L + +L+LDE SAL
Sbjct: 112 AAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 359 DS--RSELLVRQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKL 403
D R+E+L V +L T+L++ HH E +A RV LDNG++
Sbjct: 161 DPALRAEML--ALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRI 208
|
Length = 231 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-29
Identities = 81/222 (36%), Positives = 119/222 (53%), Gaps = 21/222 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NIS ++ LD +NL + G VAL+GPSG GKSTL +++ L P SG I ++
Sbjct: 5 NISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
D R+ + R +G V Q LF TV +NI + + K +++ AR E V
Sbjct: 63 DAT--RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK--ARVEELLELV 118
Query: 311 RTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--L 365
+ +G R + LSGGQRQR+A+ARAL VL+LDE ALD+ R EL
Sbjct: 119 QL------EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW 172
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406
+R+ D + H T + + H E M +A R+ ++ NGK+E++
Sbjct: 173 LRKLHDEV--HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-29
Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 31/225 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+++ Y + VL+ ++ ++ GE +A++GP+G GKSTL K +L L P SG I V
Sbjct: 4 DLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITL---FSGTVAE--------NIGYRDLMTKIDMERVEHT 300
++ R + +G V Q ++ F +V + + G ++K D +V+
Sbjct: 62 PLEKER-----KRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA 116
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
E + IG LSGGQ+QR+ +ARAL Q+ +L+LDE + +D
Sbjct: 117 LERVGLSELA-------DRQIG----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 361 RSELLVRQAVDRLLGH-HTVLVIAHHLETVM-MAKRVFLLDNGKL 403
+++ + + + L T+LV+ H L V+ RV LL+ +
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 7e-29
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 23/219 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ +Y LD ++L + G L+GP+G GK+TL ++L L P SG I +D
Sbjct: 5 NLTKRYGKKR--ALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
DV LRR +G + Q+ ++ TV E + Y + I + V+ AR E V
Sbjct: 62 DVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVK--ARVDEVLELV 118
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-----ELL 365
+ SLSGG R+R+ IA+AL + S+LI+DE T+ LD LL
Sbjct: 119 -----NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLL 173
Query: 366 VRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403
DR V++ H +E V + +V +L+ GKL
Sbjct: 174 SELGEDR-----IVILSTHIVEDVESLCNQVAVLNKGKL 207
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 8e-29
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 18/222 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N++ Y +D L+L++ GE L+G +G GK+T K+L P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
++ + ++ R + R+ +G Q LF TV E++ + + L E VE R
Sbjct: 61 INGYSIRTDR-KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
L N +LSGG +++L++A AL SVL+LDE TS LD S
Sbjct: 120 VLG-------LTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 363 ELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403
+ + + ++++ H ++ + R+ ++ +GKL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-29
Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 31/251 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F N+SF+Y + L ++ +I G+ +++G +G GKST+AKL++ + SG I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--------RDLMTKIDMERV 297
++ + + + LR+H+G+V Q D V ++ + D M + E +
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEAL 127
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ AD P +LSGGQ+QR+AIA L N SV+ILDEATS
Sbjct: 128 KQVDMLERAD----YEPN-----------ALSGGQKQRVAIAGVLALNPSVIILDEATSM 172
Query: 358 LD--SRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413
LD +R LL V ++ H T++ I H L M A V +++ G + + T +
Sbjct: 173 LDPDARQNLL--DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIF 230
Query: 414 SNHDSLVSAGL 424
+ + L GL
Sbjct: 231 DHAEELTRIGL 241
|
Length = 269 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 13/206 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++L ++ GE V L+GPSG GK+TL +++ L +G I D+ RL +R
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKR 76
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G+V Q LF TVA+NI Y + M R E R A + V LP + G
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLV-GLPGSERKYPG 133
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL---LGHHTV 379
LSGGQ+QR+A+ARAL + +L+LDE SALD+R +R + +L LG T+
Sbjct: 134 ----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTI 189
Query: 380 LVIAHHLETVMMAKRVFLLDNGKLEE 405
+V E + MA R+ ++++G +E+
Sbjct: 190 MVTHDQEEALSMADRIVVMNHGVIEQ 215
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-28
Identities = 71/210 (33%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266
+ +L++ GE VA++GPSG GKSTL L+ +P SG I V+D L +R V
Sbjct: 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVS 73
Query: 267 LVSQDITLFSG-TVAENIG---YRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
++ Q+ LF+ TV +NIG + L + E+V A+ +++ LP+
Sbjct: 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------ 127
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--LVRQAVDRLLGHH 377
LSGGQRQR+A+AR L + + +L+LDE SALD R E+ LV+Q
Sbjct: 128 -----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQR 180
Query: 378 TVLVIAHHL-ETVMMAKRVFLLDNGKLEEL 406
T+L++ HHL + +A ++ ++ GK++ +
Sbjct: 181 TLLMVTHHLSDARAIASQIAVVSQGKIKVV 210
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-28
Identities = 49/130 (37%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 229 STLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLF-SGTVAENIGYR 286
STL KL+ L P SG IL+D D + LR+ +G+V QD LF TV EN+ +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346
L K R E +F+ P +LSGGQ+QR+AIARAL +
Sbjct: 61 -LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKP 109
Query: 347 SVLILDEATS 356
+L+LDE T+
Sbjct: 110 KLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-28
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 28/224 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + + L ++L + G+ ++GP+G GKS L + + P SG IL++
Sbjct: 5 NLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANA 306
D+ N L +R + V Q+ LF TV +NI Y R + K +V A
Sbjct: 62 DITN--LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI 119
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
D + P+ +LSGG++QR+AIARAL N +L+LDE SALD R++ +
Sbjct: 120 DHLLNRKPE-----------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168
Query: 367 RQAVDRLLGHH----TVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
R+ + ++ TVL + H E +A +V ++ NGKL +
Sbjct: 169 REELKKI--RKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 187 DVKFCNISFKYADNMP-LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+VK N++FKY ++ L+ ++ H++ GE +++IG +G GKST +L+ L + SG
Sbjct: 6 EVK--NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY----RDLMTKIDMERVEH 299
I++D + + +R +G+V Q D TV +++ + + + + ERV
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE 123
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+F P + LSGGQ+QR+AIA A+ ++ILDEATS LD
Sbjct: 124 ALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 360 SRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417
L + + + + + TV+ I H L+ V ++ RV ++ NG++E + L S +
Sbjct: 173 PEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
Query: 418 SLVSAGLVI 426
L+ GL I
Sbjct: 233 DLLQLGLDI 241
|
Length = 279 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-28
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 23/215 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD ++ +R GE LIGP+G GK+TL L+ P SG +L D D+ + + R
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 264 H-VGLVSQDITLFSG-TVAENI--------GYRDLMTKIDMERVEHTARTANADEFVRTL 313
+G Q LF TV EN+ G L+ + E E R E V L
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG-L 133
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ G LS GQ++RL IARAL + +L+LDE + L+ + + +
Sbjct: 134 ADLADRPAG----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE---ETEELAELI 186
Query: 374 L----GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
TVL++ H ++ VM +A RV +LD G++
Sbjct: 187 RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-28
Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 18/228 (7%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ F L+ ++LH+ AG+ +IG SG GKSTL + + L P SG
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 246 ILVDDHDV---QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA 301
++VD D+ N L RR +G++ Q L S TV N+ L ++D +
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVA---LPLELDNTPKDEIK 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-- 359
R E + + G P S+LSGGQ+QR+AIARAL N VL+ DEATSALD
Sbjct: 119 RKVT--ELLALVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 360 -SRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
++S L + + ++R LG T+L+I H ++ V + V ++ NG+L E
Sbjct: 175 TTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIE 221
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 7e-28
Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 23/212 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSL 261
LD ++L +R GE AL+G +G GKSTL K+L +Y P SG IL+D V + R D+L
Sbjct: 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR-DAL 81
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQG 316
+ V Q+++L +VAENI T+ ID + + AR A + P
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP-- 139
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-SELL---VRQAVDR 372
+T +G LS QRQ + IARAL ++ VLILDE T+AL + +E L +R+ +
Sbjct: 140 -DTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ 194
Query: 373 LLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
++ I+H L+ V +A R+ +L +G++
Sbjct: 195 ---GVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-28
Identities = 78/231 (33%), Positives = 116/231 (50%), Gaps = 31/231 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ IS + V+ L+L I GE + L+GPSG GK+T+ +L+ P SG I+
Sbjct: 15 VELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-----IDMERVEHTA 301
+D D+ ++ + RHV V Q LF TV EN+ + M K I RV
Sbjct: 73 LDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIT-PRVMEAL 129
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
R +EF + P LSGGQ+QR+AIARA+ VL+LDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 362 ------SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406
+EL +A+ R LG V V E + M+ R+ ++ +G++E+
Sbjct: 179 LRKQMQNEL---KALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
|
Length = 375 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 9e-28
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 53/209 (25%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+D ++ I+ GET+ L+G SG GKSTL +L+L L +P SG IL + D+ + + R
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRER 88
Query: 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324
V +L+ K+ + +EF+ P
Sbjct: 89 V--------------------LELLEKVGLP-----------EEFLYRYP---------- 107
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG------HHT 378
LSGGQRQR+ IARAL N +++ DE SALD + V+ + LL T
Sbjct: 108 -HELSGGQRQRIGIARALALNPKLIVADEPVSALD----VSVQAQILNLLKDLQEELGLT 162
Query: 379 VLVIAHHLETV-MMAKRVFLLDNGKLEEL 406
L I+H L V ++ R+ ++ GK+ E+
Sbjct: 163 YLFISHDLSVVRYISDRIAVMYLGKIVEI 191
|
Length = 268 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 4e-27
Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 23/204 (11%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD 259
L ++L I A IGPSG GKST + L R+ D + GC I +D D+ + RLD
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGYRDLM-----TKIDMER-VEHTARTANADEFVR 311
LR VG+V Q F ++ EN+ Y + +K +++ VE + R A E V+
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
+ G+ LSGGQ+QRL IARA+ + V+++DE SALD + V + +D
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 372 RLLGHHTVLVIAHHLETVMMAKRV 395
L ++T++++ H ++ A RV
Sbjct: 208 ELRQNYTIVIVTHSMQ---QAARV 228
|
Length = 267 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 4e-27
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
+++F Y D L +++ I VA IGPSG GKST +L R+ D L G I
Sbjct: 8 DVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI 65
Query: 247 LVDDHDV--QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEH 299
+D ++ + +++D LR++VG+V Q F ++ EN+ Y + + +RVE
Sbjct: 66 RIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE 125
Query: 300 TARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
T + A DE L + +LSGGQ+QRL IARA+ + SVL++DE SAL
Sbjct: 126 TLKGAALWDEVKDKLKES--------AFALSGGQQQRLCIARAMAVSPSVLLMDEPASAL 177
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLE 387
D S V + + L +T++++ H+++
Sbjct: 178 DPISTAKVEELIHELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-26
Identities = 77/229 (33%), Positives = 112/229 (48%), Gaps = 35/229 (15%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ I F Y + P+ D L GE A++GPSG GKSTL L+ P SG +L
Sbjct: 1 VRLDKIRFSYGE-QPMHFD---LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
++ DV R V ++ Q+ LF+ TV +N+G +T D + +E
Sbjct: 57 INGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA 114
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS-- 360
+ LP LSGG+RQR+A+AR L ++ VL+LDE +ALD
Sbjct: 115 RVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 361 RSELLVRQAVDRLLGHH-----TVLVIAHHLETVM-MAKRVFLLDNGKL 403
R+E+L D +L H TVL++ H E +A+RV LDNG++
Sbjct: 164 RAEML-----DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 76/251 (30%), Positives = 131/251 (52%), Gaps = 19/251 (7%)
Query: 188 VKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+K N++ Y + P LD +N+ I GE V LIG +G GKSTL + L L P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 245 CILVDDHDV--QNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHT 300
I++D D+ + ++L +R+ VGLV Q + LF T+ ++I + + + E +E+
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
+ A + + Y + LSGGQ++R+AIA + +LILDE T+ LD
Sbjct: 123 VKRA-----MNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 360 -SRSELL--VRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415
R E+L +++ + T+++++H +E V +A R+ +++ GK E +
Sbjct: 178 KGRDEILNKIKELHKEY--NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
Query: 416 HDSLVSAGLVI 426
++L S GL +
Sbjct: 236 VETLESIGLAV 246
|
Length = 287 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 36/222 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y D L +++ I A IGPSG GKSTL + R+ D + C I
Sbjct: 30 NLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI 87
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----------RDLMTKIDM 294
+D ++ + ++D LRR VG+V Q F ++ EN+ Y R L D
Sbjct: 88 RLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL----D- 142
Query: 295 ERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
E VE + R A DE L + LSGGQ+QRL IARA+ VL+LDE
Sbjct: 143 EAVERSLRGAALWDEVKDRLHEN--------AFGLSGGQQQRLVIARAIAIEPEVLLLDE 194
Query: 354 ATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV 395
TSALD S L + + + L +T++++ H+++ A RV
Sbjct: 195 PTSALDPISTLKIEELITELKSKYTIVIVTHNMQ---QAARV 233
|
Length = 272 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-26
Identities = 71/226 (31%), Positives = 106/226 (46%), Gaps = 35/226 (15%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+SF+Y LD ++ +R G VAL+GP+G GKSTL LL RLY G I V H
Sbjct: 6 GLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAENIGY---------RDLMTKID--MERVEH 299
D++ +L R +G+V Q TL +V +N+ Y + +I + R+
Sbjct: 64 DLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL 122
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R AD+ VR L+GG R+R+ IARAL ++L+LDE T LD
Sbjct: 123 AER---ADDKVRE---------------LNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
Query: 360 SRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKL 403
S + V L +VL H ++ + R+ +L G++
Sbjct: 165 PASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-T 278
L+GPSG GK+TL +LL P SG I++D DV N+ RH+ +V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV--PPHLRHINMVFQSYALFPHMT 58
Query: 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS----LSGGQRQ 334
V EN+ + M K+ R E R A V + LSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVP--RAEIKPRVLEALRLV---------QLEEFADRKPHQLSGGQQQ 107
Query: 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL---LGHHTVLVIAHHLETVMM 391
R+A+ARAL +L+LDE SALD + ++ + + LG V V E + M
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 392 AKRVFLLDNGKLEELNRSTLLGSNHDSLVSAGLV 425
+ R+ ++ GK+ ++ + +L A +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 4e-26
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 28/211 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
+L ++L + GE VAL+G +G GK+TL K ++ L P SG I D D+ + R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 263 RHVGLVSQDITLFSG-TVAENI---GYRDLMTKI--DMERVEHTARTANADEFVRTLPQG 316
+G V + +F TV EN+ Y K +ERV + F R L +
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY--------ELFPR-LKER 125
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
+LSGG++Q LAIARAL +L+LDE + L + +V + + +
Sbjct: 126 RKQ----LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIREL 178
Query: 377 H----TVLVIAHHLETVM-MAKRVFLLDNGK 402
T+L++ + + +A R ++L+ G+
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-26
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD----HDVQNIRLDSLRRHVGLVSQ 270
E + G SG GKSTL + + L P G I+++ + I L +R +GLV Q
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 271 DITLFSG-TVAENI--GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327
LF V EN+ G + + D V+ D + P
Sbjct: 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQ----------- 131
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVLVIAHH 385
LSGG++QR+A+ARAL +L+LDE SALD L + + ++ + V+ + H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 386 LETV-MMAKRVFLLDNGKLE 404
L +A R+ ++++G+L+
Sbjct: 192 LSEAEYLADRIVVMEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-26
Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y L + + L I + A IGPSG GKST+ + RL D + G +
Sbjct: 15 NLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY--RDLMTKIDM-ERVEHTA 301
++ +D +RR +G+V Q F ++ +NI Y R K DM E VE +
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSL 132
Query: 302 RTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
R A DE L Q G SLSGGQ+QRL IARA+ V+++DE SALD
Sbjct: 133 RQAALWDEVKDKLKQS--------GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP 184
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV 395
S L + + + L +T++++ H+++ A RV
Sbjct: 185 ISTLRIEELMHELKEQYTIIIVTHNMQ---QAARV 216
|
Length = 264 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-25
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 45/206 (21%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSGCILVDDHDVQNIRLDSL 261
+L ++ + GE A++GPSG GKSTL L R +SG +L++ + S
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLDKRSF 80
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
R+ +G V QD L TV E + + +
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------- 109
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-LGHHTV 379
LSGG+R+R++IA L N S+L LDE TS LDS S L V + RL T+
Sbjct: 110 -----RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164
Query: 380 LVIAHHLETVM--MAKRVFLLDNGKL 403
+ H + + + ++ LL G++
Sbjct: 165 ICSIHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-25
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 30/228 (13%)
Query: 192 NISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
N+S+KY N L LD +NL ++ GE + ++G +G GKST+AK + L P G +
Sbjct: 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY 68
Query: 248 VDDHDVQNIR-LDSLRRHVGLVSQD------ITLFSGTVA---ENIGYRDLMTKIDMERV 297
VD D + L +R G+V Q+ T+ VA EN+G + ERV
Sbjct: 69 VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR---ERV 125
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + + E+ R P H+ LSGGQ+QR+AIA L +I DE T+
Sbjct: 126 DESLKKVGMYEYRRHAP-----HL------LSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
Query: 358 LDSRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKL 403
LD V + L + T+++I H++E + A R+ ++D+GK+
Sbjct: 175 LDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 12/239 (5%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G + F + +Y + +PLVL ++ I E V ++G +G GKSTL +R+ + G
Sbjct: 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I V+ ++ L LRR ++ QD LF GTV +N+ D + V
Sbjct: 1367 IRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALELVG 1423
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL-DEATS----ALDS 360
E V + +G ++ + GS+ S GQRQ + +ARAL + S IL DEAT+ ALD
Sbjct: 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSL 419
+ + V A +TV+ IAH L TV ++ ++D+G + E+ L N S+
Sbjct: 1484 QIQATVMSA----FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSI 1538
|
Length = 1560 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 40/234 (17%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ I+ ++ + D ++L ++ GE AL+G +G GKSTL K+L LY P SG I
Sbjct: 5 LEMRGITKRFPGV--VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 248 VDDHDVQNIRL----DSLRRHVGLVSQDITLFSG-TVAENI--GYRDL-MTKIDMERVEH 299
VD + +R+ D++R +G+V Q L TVAENI G ID +
Sbjct: 63 VDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR- 118
Query: 300 TARTANADEFVRTLPQGYNTHIGP--RGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
++ L + Y + P + + LS G++QR+ I +ALY+ + +LILDE T+
Sbjct: 119 --------ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 358 LDSRSELLVRQAVDRL---LGH-----HTVLVIAHHLETVM-MAKRVFLLDNGK 402
L Q D L L T++ I H L+ VM +A RV +L GK
Sbjct: 171 LTP-------QEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 23/224 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + +LD ++L +R GE VA++GP+G GKSTL + L P SG + ++
Sbjct: 7 NLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ + L R ++ Q +L F TV E + M R H A D V
Sbjct: 65 PLADWSPAELARRRAVLPQHSSLSFPFTVEEVVA---------MGRAPHGLSRAEDDALV 115
Query: 311 RT-LPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSS------VLILDEATSALDSRS 362
L Q H+ R LSGG++QR+ +AR L Q L+LDE TSALD
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 363 ELLVRQAVDRLLGHH--TVLVIAHHLE-TVMMAKRVFLLDNGKL 403
+ V + +L V+V+ H L A R+ LL G+L
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219
|
Length = 258 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 36/244 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCI 246
N++ Y ++ L +NL I E A+IGPSG GKST K L R+ + + +G I
Sbjct: 29 NLNLWYGEDH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86
Query: 247 LVDDHDV--QNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERV 297
L D ++ ++ ++ LR +VG+V Q F ++ +N+ Y +D K E V
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD--KKTLDEIV 144
Query: 298 EHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E + R A DE L H G LSGGQ+QRL IAR L V+++DE TS
Sbjct: 145 EKSLRGAAIWDELKDRL------HDNAYG--LSGGQQQRLCIARCLAIEPDVILMDEPTS 196
Query: 357 ALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV-----FLLDNGKLEELNRSTL 411
ALD S L V + V L ++++++ H+++ A R+ F L NG + E + +
Sbjct: 197 ALDPISTLKVEELVQELKKDYSIIIVTHNMQ---QAARISDKTAFFL-NGYVNEYDDTDK 252
Query: 412 LGSN 415
+ SN
Sbjct: 253 IFSN 256
|
Length = 271 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-25
Identities = 63/192 (32%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LD 259
P VL LN GE +AL+G +G GKSTL L L P SG +L+D + R L
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTA----NADEFVRTL 313
R+ VGLV QD LF+ V +++ + L + VE R A A
Sbjct: 65 ERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGG+++R+AIA A+ VL+LDE T+ LD + + RL
Sbjct: 125 TH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
Query: 374 LGHHTVLVIAHH 385
+VI+ H
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261
++ +L I GE ++G SG GKST ++L RL +P +G I +D ++ L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA----NADEFVRTLPQ 315
R+ +G+V Q LF T+ +N + + + A +E+ P
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS------RSELLVRQA 369
LSGG +QR+ +ARAL +L++DEA SALD + EL QA
Sbjct: 129 -----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 370 VDRLLGHHTVLVIAHHL-ETVMMAKRVFLLDNGKL 403
T++ I H L E + + R+ ++ G++
Sbjct: 178 TL----QKTIVFITHDLDEAIRIGDRIVIMKAGEI 208
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-25
Identities = 110/413 (26%), Positives = 188/413 (45%), Gaps = 42/413 (10%)
Query: 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVK 63
Q+ V S + SL+ L+ P +I+ +++K++K+ +NEVL A+ VK
Sbjct: 438 QLGVASLIGSLMLVLMFPIQTFIIS----KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVK 493
Query: 64 ANNAEMCESARFRRLAHSDLCELLKKRKMKAL-------IPQTVQLIYFGALFILCGGSL 116
E ++ + + +L K + + A IP V ++ FG +F L GG L
Sbjct: 494 CYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFG-VFTLLGGDL 552
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP 176
+F SL + + +FM+ + + +A N +++RL +L + +V+
Sbjct: 553 -TPARAFTSLSLFAVLRFPLFMLPNL--ITQAVN----ANVSLKRLEELLLAEERVLLPN 605
Query: 177 DAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
+ +K S+ P L +NL + G VA++G +G GK++L +L
Sbjct: 606 PPLEPGLPAISIKNGYFSWDSKAERP-TLSNINLDVPVGSLVAIVGSTGEGKTSLISAML 664
Query: 237 RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296
P S +V +R V V Q +F+ TV +NI + + D ER
Sbjct: 665 GELPPRSDASVV------------IRGTVAYVPQVSWIFNATVRDNILFG---SPFDPER 709
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E + LP G T IG RG ++SGGQ+QR+++ARA+Y NS V I D+ S
Sbjct: 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769
Query: 357 ALDSRSELLVRQAVDRL----LGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
ALD+ + RQ D+ L T +++ + L + R+ L+ G ++E
Sbjct: 770 ALDAH---VGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819
|
Length = 1622 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 25/212 (11%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261
++ +L + GE ++G SG GKSTL +LL RL +P G ILVD D+ + L L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 262 RRH-VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP-QGYN 318
RR + +V Q L TV EN+ + ++++ V R A E + + +GY
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAF-----GLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS------RSELLVRQAVDR 372
+ LSGG +QR+ +ARAL + +L++DEA SALD + ELL QA +
Sbjct: 159 DK---YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA--K 213
Query: 373 LLGHHTVLVIAHHL-ETVMMAKRVFLLDNGKL 403
L T++ I H L E + + R+ ++ +G++
Sbjct: 214 L--KKTIVFITHDLDEALRIGDRIAIMKDGEI 243
|
Length = 386 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-25
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 12/207 (5%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDS 260
VL +NL I GE V L GPSG GK+TL L+ L G + V ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 261 LRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
LRR++G + Q L T +N+ M + + A + + G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNV----QMALELQPNLSYQEARERARAMLEAV--GLGD 133
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH-- 377
H+ +LSGGQ+QR+AIARAL +++ DE T+ALDS+S V + + +L
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193
Query: 378 TVLVIAHHLETVMMAKRVFLLDNGKLE 404
T+L++ H + +A R+ +++GKL
Sbjct: 194 TILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-25
Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 23/228 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S + VL ++L+I GE V +IGPSG GKSTL + + +L + SG ++
Sbjct: 2 IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 248 VDDHDVQNIRLD--SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
VD V + ++D +R+ G+V Q LF T EN+ + L RV ++
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL-------RVRGASK-E 111
Query: 305 NADEFVRTL--PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS-- 360
A++ R L G S LSGGQ+QR+AIARAL +++ DE TSALD
Sbjct: 112 EAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
Query: 361 RSELLVRQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
R E+L V + L T++++ H + +A R+ +D G++ E
Sbjct: 172 RHEVL---KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216
|
Length = 240 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 28/218 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--PLS---GCI 246
+SF Y D L ++L + ALIGPSG GKST + L R+ D P + G I
Sbjct: 11 GLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERV 297
L+D ++ + +D LRR VG+V Q F ++ EN+ Y +D ERV
Sbjct: 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD--KAYLAERV 126
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E + R A + V+ + LSGGQ+QRL IARAL VL++DE SA
Sbjct: 127 ERSLRHAALWDEVKD-------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV 395
LD + + + + L +T++++ H+++ A RV
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQ---QAARV 214
|
Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 21/206 (10%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDSLRRH- 264
+L +R GE ++G SG GKSTL + + RL +P SG +L+D D+ + L LRR
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ +V Q L TV EN+ + ++++ V R A E + + H P
Sbjct: 104 ISMVFQSFALLPHRTVLENVAF-----GLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-----HHT 378
LSGG +QR+ +ARAL + +L++DEA SALD L+ R+ D LL T
Sbjct: 159 D--ELSGGMQQRVGLARALAVDPDILLMDEAFSALDP---LIRREMQDELLRLQAELQKT 213
Query: 379 VLVIAHHL-ETVMMAKRVFLLDNGKL 403
++ I H L E + + R+ ++ +G+L
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRL 239
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 4e-24
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 13/214 (6%)
Query: 197 YADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256
Y +L+ ++L +RAGE +A+ GPSG GKSTL K++ L P SG +L + DV +
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQ 315
+ ++ R+ V +Q LF TV +N+ + + R R A D R LP
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI------RNRRPDRAAALDLLARFALPD 124
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
+ + + LSGG++QR+A+ R L +L+LDE TSALD ++ + + + R +
Sbjct: 125 ---SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181
Query: 376 HHTVLV--IAHH-LETVMMAKRVFLLDNGKLEEL 406
V V I H + + A +V L G E+
Sbjct: 182 EQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 7e-24
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 7/206 (3%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L+ L+L I G+ V +IG +G GKSTL + P SG IL+D DV +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 264 HVGLVSQDI---TLFSGTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNT 319
+ V QD T T+ EN+ + K + + R ++ E + L G
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH-- 377
+ R LSGGQRQ L++ A +L+LDE T+ALD ++ V + +++ H
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 378 TVLVIAHHLE-TVMMAKRVFLLDNGK 402
T L++ H++E + R+ +L +GK
Sbjct: 201 TTLMVTHNMEDALDYGNRLIMLHSGK 226
|
Length = 263 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-24
Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 19/209 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-- 261
VL ++L I AGE VA++G SG GKSTL +L L P SG V DV + D+L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 262 --RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
R H G + Q L S T A+N+ + +E R A E ++ L G
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-----LERKQRLLRAQELLQRL--GLE 135
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV----RQAVDRLL 374
+ + S LSGGQ+QR++IARAL V++ DE T ALDS S V Q DR
Sbjct: 136 DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR-- 193
Query: 375 GHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
HTV+++ H + A+RV + +G++
Sbjct: 194 -GHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 8e-24
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+ ++ GE L+G +G GK+TL +++ L P SG + +D D +RR
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRK 76
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+G++ + L++ T EN+ Y + + R E AR A + + ++
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLN--GLSRKEIKARIAELSKRL-----QLLEYLDR 129
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIA 383
R S G +Q++AIARAL + S+L+LDE TS LD R+ + +L ++ +
Sbjct: 130 RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 384 HHL--ETVMMAKRVFLLDNGKL 403
H+ E + RV +L G++
Sbjct: 190 SHIMQEVEALCDRVIVLHKGEV 211
|
Length = 245 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 8e-24
Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 28/216 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+LD ++L +R GE +A++GP+G GKSTL K L P SG + ++ + + + L R
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 264 HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEH-TARTANADEFV--RTLPQGYNT 319
H ++ Q+ +L F TV E + M R+ H + R DE + + L +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQ---------MGRIPHRSGREPEEDERIAAQALAATDLS 126
Query: 320 HIGPRG-SSLSGGQRQRLAIARALYQ------NSSVLILDEATSALDSRSEL----LVRQ 368
+ R +LSGG++QR+ +AR L Q + L LDE TSALD + L RQ
Sbjct: 127 GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 369 AVDRLLGHHTVLVIAHHLE-TVMMAKRVFLLDNGKL 403
VL + H L A R+ LL G++
Sbjct: 187 LAREGGA---VLAVLHDLNLAAQYADRIVLLHQGRV 219
|
Length = 259 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 9e-24
Identities = 78/243 (32%), Positives = 126/243 (51%), Gaps = 35/243 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N+ Y +N L +NL I A + ALIGPSG GKSTL + L R+ D ++G +
Sbjct: 8 NLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 247 LVDDHDV-QNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERVE 298
+D D+ NI + LR VG+V Q F ++ EN+ Y +D K+ E VE
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKD--KKVLDEVVE 123
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+ R A + V+ +H LSGGQ+QRL IAR + V+++DE TSAL
Sbjct: 124 RSLRGAALWDEVKDR---LKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSAL 176
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV------FLLDNGKLEELNRSTLL 412
D + + + ++ L ++T++++ H ++ A+R+ FL+ G+L E + + ++
Sbjct: 177 DPIATHKIEELMEELKKNYTIVIVTHSMQ---QARRISDRTAFFLM--GELVEHDDTQVI 231
Query: 413 GSN 415
SN
Sbjct: 232 FSN 234
|
Length = 249 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 1e-23
Identities = 75/219 (34%), Positives = 104/219 (47%), Gaps = 23/219 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VLD LN + AGE VALIGPSG GKST+ ++L+ L G I V+ + ++
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 258 -------LDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
L +R +G+V Q LF TV +N+ ++ M R E R +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL-GMARAEAEKRAMELLDM 133
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
V G + LSGGQ+QR+AIARAL V++ DE TSALD V
Sbjct: 134 V-----GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188
Query: 370 VDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ RL H T+L++ H + A RV D G++ E
Sbjct: 189 IRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 75/209 (35%), Positives = 109/209 (52%), Gaps = 15/209 (7%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL+ ++L I +G+ VAL+GPSG GK+TL +++ L SG I DV RL + R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
VG V Q LF TV +NI + + + R E A + + L H+
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTV----LPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 323 PR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--LVRQAVDRLLGHH 377
R + LSGGQ+QR+A+ARAL +L+LDE ALD+ R EL +RQ + L
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL--KF 188
Query: 378 TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
T + + H E M +A RV ++ G +E+
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217
|
Length = 353 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-23
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 16/203 (7%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VLD ++LH++ GE +GP+G GK+T K++L L P SG I D Q R
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALR 72
Query: 264 HVG-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+G L+ + T EN+ + I +R++ G
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAK 121
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVLV 381
+ S G +QRL IA AL N +LILDE T+ LD +R+ + L TVL+
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 382 IAHHLETV-MMAKRVFLLDNGKL 403
+H L + +A R+ +++ GKL
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-23
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 32/225 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+ KY D + ++ +R GE L+GP+G GK+T K+L L P SG V H
Sbjct: 5 NLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI-------GY--RDLMTKIDMERVEHTA 301
DV +RR +G+V QD+++ T EN+ G + +ID E ++
Sbjct: 63 DVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID-ELLDFVG 120
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
AD V+T SGG R+RL IAR+L VL LDE T LD +
Sbjct: 121 LLEAADRLVKT---------------YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165
Query: 362 SELLVRQAVDRLLGHH--TVLVIAHHLETV-MMAKRVFLLDNGKL 403
+ V + +++L T+L+ H++E + RV ++D+G++
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 3e-23
Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 37/230 (16%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K +I++ Y ++P+ + +L + GE VA++GPSG GKSTL L+ P SG +
Sbjct: 2 LKLTDITWLY-HHLPM---RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-------MTKIDMERVEH 299
++ D + RR V ++ Q+ LFS TVA+NIG L + E++
Sbjct: 58 LNGQD--HTTTPPSRRPVSMLFQENNLFSHLTVAQNIG---LGLNPGLKLNAAQREKLHA 112
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
AR ++ + LP LSGGQRQR+A+AR L + +L+LDE SALD
Sbjct: 113 IARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
Query: 360 S--RSEL--LVRQAVD-RLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
R E+ LV Q R L T+L+++H LE +A R ++ +G++
Sbjct: 162 PALRQEMLTLVSQVCQERQL---TLLMVSHSLEDAARIAPRSLVVADGRI 208
|
Length = 232 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 3e-23
Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 26/227 (11%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD 259
L + + I ALIGPSG GKSTL + R+ D + GC IL + ++ + D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMER-VEHTARTANADEFVRT 312
+LRR +G+V Q F ++ EN+ Y K ++ VE + + A + V+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD 141
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
+ SLSGGQ+QRL IAR L N V+++DE SALD + + ++
Sbjct: 142 -------RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 373 LLGHHTVLVIAHHLETVMMAKRVF----LLDNGKLEELNRSTLLGSN 415
L +TV+++ H+++ A RV + GKL E +++T + N
Sbjct: 195 LKKEYTVIIVTHNMQ---QAARVSDYTGFMYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-23
Identities = 111/435 (25%), Positives = 195/435 (44%), Gaps = 66/435 (15%)
Query: 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVK 63
Q+ V S SLI L+IP L++ ++RK++K+ +NE+L ++ VK
Sbjct: 438 QLGVASLFGSLILFLLIPLQTLIV----RKMRKLTKEGLQWTDKRVGIINEILASMDTVK 493
Query: 64 ANNAEMCESARFRRLAHSDLCELLKKRKMKAL-------IPQTVQLIYFGALFILCGGSL 116
E +R + + + +L K + + A IP V L+ FG +F+L GG L
Sbjct: 494 CYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFG-VFVLLGGDL 552
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIE-- 174
+F SL + + S P+ + ++ +++R+ +L + +++
Sbjct: 553 -TPARAFTSLSLFAVLRS------PLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN 605
Query: 175 ---KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
+P A ++ NG S+ + P L +NL I G VA++G +G GK++L
Sbjct: 606 PPLQPGAPAISIKNG-----YFSWDSKTSKP-TLSDINLEIPVGSLVAIVGGTGEGKTSL 659
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
+L +V +R V V Q +F+ TV ENI + +
Sbjct: 660 ISAMLGELSHAETSSVV------------IRGSVAYVPQVSWIFNATVRENILFG---SD 704
Query: 292 IDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+ ER ++ TA + D P T IG RG ++SGGQ+QR+++ARA+Y NS
Sbjct: 705 FESERYWRAIDVTALQHDLDLL----PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760
Query: 348 VLILDEATSALDSRSELLVRQAVDRLLGHH----TVLVIAHHLETVMMAKRVFLL----- 398
+ I D+ SALD+ + Q D + T +++ + L + + R+ L+
Sbjct: 761 IYIFDDPLSALDAH---VAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMI 817
Query: 399 -DNGKLEELNRSTLL 412
+ G EL++S L
Sbjct: 818 KEEGTFAELSKSGSL 832
|
Length = 1495 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 4e-23
Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD--SLRRH 264
I G+ ALIGPSG GKST+ + L R+ D + GC +L D D+ + R+D +RR
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 265 VGLVSQDITLFSGTVAENI--GYRDLMTKIDM-ERVEHTARTANA-DEFVRTLPQGYNTH 320
+G+V Q F ++ ENI G R DM E VE + R A DE L +
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNE----- 150
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVL 380
G SLSGGQ+QRL IAR + V+++DE SALD S L + + + L + T++
Sbjct: 151 ---SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIV 207
Query: 381 VIAHHLE 387
++ H+++
Sbjct: 208 IVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 4e-23
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LS 243
G ++ ++ Y N VLD L+L I AGE +ALIG SG GK+TL + + L+
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY---RDLMTKIDM-ERVE 298
G I + D D+ + +R + L+ Q+ LF V +N+ + M K D+ ERV
Sbjct: 62 GRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+ + LP + LSGG +QR+AIARA+ VL+LDE SAL
Sbjct: 120 DALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 359 DSRSELLVRQAVDRL---LGHHTVLVIAH-HLETVMMAKRVFLLDNGKLEEL 406
D+ +R+ + L L T+L + H + + +A + ++ +G+L
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 6e-23
Identities = 78/216 (36%), Positives = 111/216 (51%), Gaps = 23/216 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--------QN 255
VL ++L ++ GE VA+IGPSG GK+TL + + L P +G I V D + Q
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 256 IRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314
+ LR+HVG V Q+ LF TV ENI ++ K + E TAR A E + +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-GEPKEEATAR---ARELLAKVG 133
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR--SELL--VRQAV 370
PR LSGGQ+QR+AIARAL V++ DE TSALD E+L +RQ
Sbjct: 134 LAGKETSYPR--RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA 191
Query: 371 DRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
T++++ H + +A R +D G++ E
Sbjct: 192 QE---KRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
|
Length = 250 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 7e-23
Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 30/226 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ + Y D L +N GE VAL+GP+G GKSTL + P SG +L+
Sbjct: 6 DLKYSYPDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 252 DVQ--NIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTARTA--- 304
++ L +R+ VG+V Q D LF+ TV E++ + L + E VE + A
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124
Query: 305 -NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ F P H LSGGQ++R+AIA L +++LDE TS LD
Sbjct: 125 VGMEGFENKPPH----H-------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 364 LLVRQAVDRLLGH-----HTVLVIAHHLETV-MMAKRVFLLDNGKL 403
+ +LL T+++ H ++ V + A +V+++ +GK+
Sbjct: 174 ----SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 1e-22
Identities = 76/224 (33%), Positives = 107/224 (47%), Gaps = 15/224 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS--- 260
VL ++L I GETV L+G SG GKSTLA+LLL L P G + D+ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 261 LRRHVGLVSQD-ITLFSG--TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
RR V LV QD + + TV + IG L ++ E AR A + V +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIG-EPLRHLTSLDESEQKARIAELLDMVGLRSE-- 142
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL--LG 375
LSGGQ QR+ IARAL +++LDEA S LD + ++ + + +L
Sbjct: 143 --DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF 200
Query: 376 HHTVLVIAHHLETVM-MAKRVFLLDNGKL-EELNRSTLLGSNHD 417
L I H L V +RV ++D G++ EE + + LL H
Sbjct: 201 GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP 244
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-22
Identities = 68/215 (31%), Positives = 115/215 (53%), Gaps = 33/215 (15%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
V++ ++L ++ GE V L+GP+G GK+T +++ L P SG IL+D D+ + + R
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 263 RHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
+G + Q+ ++F TV ENI R L K E++E +EF
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL-----LEEF-------- 121
Query: 318 NTHIGP----RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL--LVRQA 369
HI + SSLSGG+R+R+ IARAL N L+LDE + +D + ++ +++
Sbjct: 122 --HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179
Query: 370 VDRLLGHHTVLVIAHHL-ETVMMAKRVFLLDNGKL 403
DR +G VL+ H++ ET+ + R +++ GK+
Sbjct: 180 KDRGIG---VLITDHNVRETLSITDRAYIIYEGKV 211
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-22
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 24/216 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+S +Y + VL+QL+LHI AG+ VA++G SG GKSTL +LL L P +G +L
Sbjct: 17 AVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ R D+ L+ QD L V +N+G L K A A
Sbjct: 75 PLAEAREDTR-----LMFQDARLLPWKKVIDNVG---LGLKGQWRDAALQALAA------ 120
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
G ++LSGGQ+QR+A+ARAL +L+LDE ALD+ + + ++ +
Sbjct: 121 ----VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176
Query: 371 DRLLGHH--TVLVIAHHL-ETVMMAKRVFLLDNGKL 403
+ L H TVL++ H + E V MA RV L++ GK+
Sbjct: 177 ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 1e-22
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 19/196 (9%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIR 257
L L ++L I A + +A IGPSG GKSTL + R+ D + G +L D ++ + +
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 258 LDS--LRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMERVEHTARTANADEFVR 311
++S LRR VG+V Q F ++ ENI + +D E VE + R A E V+
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD-ELVEDSLRRAAIWEEVK 152
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
+ +G++LSGGQ+QRL IARA+ VL++DE SALD S V +
Sbjct: 153 D-------KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
Query: 372 RLLGHHTVLVIAHHLE 387
L +T++++ H+++
Sbjct: 206 ELKEQYTIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 2e-22
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 26/232 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCIL 247
+ F + ++ + GE + ++G SG GKSTLA L+ L SG ++
Sbjct: 12 TVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 248 VDDHDVQNIRLDSLR----RHVGLVSQD-ITLFSGT------VAENIGYRDLMTKIDMER 296
+D D+ + +R + + ++ QD +T + + E + ++ +
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEAR- 130
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
R E V LP P LSGG RQR+ IA AL +LI DE T+
Sbjct: 131 ----KRAVELLEQVG-LPDPERRDRYPH--QLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 357 ALDSRSELLVRQAVDRLLGHH--TVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
ALD ++ + + L VL I H L V +A RV ++ G++ E
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235
|
Length = 539 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 2e-22
Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 24/236 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-- 245
+K ++F Y + VL +N+ + A+IGPSG GKSTL + L R+ D +SG
Sbjct: 5 IKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL 62
Query: 246 ---ILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-----E 295
+L+D+ ++ + LD +LR+ VG+V Q F ++ +N+ + M E
Sbjct: 63 EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDE 122
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
VE + R A + V+ N H G +LSGGQ+QRL IAR L V+++DE
Sbjct: 123 VVEKSLRQAALWDEVKD-----NLH--KSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 356 SALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAK--RVFLLDNGKLEELNRS 409
SALD S + + + + L ++T+ ++ H+++ A FLL G L E R+
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLL-TGDLVEYGRT 230
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-22
Identities = 76/217 (35%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDS 260
+D ++L +R G+T+ L+G SG GKSTL LLRL P G I D D+ + +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRP 360
Query: 261 LRRHVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
LRR + +V QD + TV + I + + + E R A E V P
Sbjct: 361 LRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPA 418
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS------ELLVRQA 369
N + P SGGQRQR+AIARAL +++LDE TSALD RS +LL
Sbjct: 419 TRNRY--PH--EFSGGQRQRIAIARALILKPELILLDEPTSALD-RSVQAQVLDLLRDLQ 473
Query: 370 VDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
L + L I+H L V + RV ++ +GK+ E
Sbjct: 474 QKHGLSY---LFISHDLAVVRALCHRVIVMRDGKIVE 507
|
Length = 534 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 2e-22
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 38/239 (15%)
Query: 196 KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255
K + V D +N +R GE +GP+G GK+T ++L L P SG V +DV
Sbjct: 1 KVYGDFKAV-DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-- 57
Query: 256 IR-LDSLRRHVGLVSQDITLFSG-TVAENI-------GY-RDLMTKIDMERVEHTARTAN 305
+R +RR +G+V Q ++ T EN+ G +D + E +E
Sbjct: 58 VREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
AD V T SGG R+RL IA +L VL LDE T+ LD R+
Sbjct: 118 ADRPVGTY---------------SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162
Query: 366 VRQAVDRLLGH-HTVLVIAHHLETV-MMAKRVFLLDNGKL------EELNRSTLLGSNH 416
+ + L T+L+ H++E + R+ ++D+G++ EEL R LG +
Sbjct: 163 IWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR--LGKDT 219
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-22
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL----------VDDHDVQ 254
LD +++ I + A+IGPSG GKST + + R+ D + + V D DV
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 255 NIRLDSLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMERVEHTARTANA-DEF 309
+ +LRR +G+V Q F ++ +N+ Y + ID ERVE + R A DE
Sbjct: 115 PV---ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID-ERVEESLRRAALWDEV 170
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ G LSGGQ+QRL IARA+ + V+++DE SALD + +
Sbjct: 171 --------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 370 VDRLLGHHTVLVIAHHLETV--MMAKRVFLLDNGKLEELNRSTLLGSNHDS 418
++ L +TV+++ H+++ + K L G+L E + + + N +S
Sbjct: 223 IEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPES 273
|
Length = 285 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 3e-22
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 19/181 (10%)
Query: 219 ALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDV--QNIRLDSLRRHVGLVSQD 271
ALIGPSG GKST + L R+ D + IL D+ + I + +R+H+G+V Q
Sbjct: 50 ALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQR 109
Query: 272 ITLFSGTVAENIGY---RDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326
F+ ++ ENI + R + K+ E VE + + A + V+ +
Sbjct: 110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSAL 162
Query: 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHL 386
+LSGGQ+QRL IARA+ +L++DE SALD S + + + + L ++T++++ H++
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNM 222
Query: 387 E 387
+
Sbjct: 223 Q 223
|
Length = 267 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 3e-22
Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI- 246
V+ N F + + L +N+ I G+ ++G G GKS+L +L L G +
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 247 ----LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR 302
+ + R + R V +Q L + TV ENI + K +R +
Sbjct: 60 WSNKNESEPSFEATRSRN-RYSVAYAAQKPWLLNATVEENITFGSPFNK---QRYKAVTD 115
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR- 361
+ + LP G T IG RG +LSGGQRQR+ +ARALYQN++++ LD+ SALD
Sbjct: 116 ACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175
Query: 362 SELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNG 401
S+ L+++ + + L T++++ H L+ + A + + +G
Sbjct: 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 3e-22
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 24/232 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL----- 242
++ N S Y + + + + I + A+IGPSG GK+TL + + R+ D +
Sbjct: 4 IEIENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 243 SGCILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
G I D+ + +LD R+ VG+V Q T F ++ +N+ + R+
Sbjct: 62 EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG--------PRIHGV 113
Query: 301 ARTANADEFV-RTLPQG-----YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354
D V +L + + + G+ LSGGQ+QRL IARAL V++LDE
Sbjct: 114 KSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEP 173
Query: 355 TSALDSRSELLVRQAVDRLLGHHTVLVIAHHL-ETVMMAKRVFLLDNGKLEE 405
TSALD + + + ++ L ++T++++ H++ + + +A + + G+L E
Sbjct: 174 TSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225
|
Length = 250 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 3e-22
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VLD ++L +R G V L+GP+G GK+TL + + P +G +LV DV+ + + R
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 264 HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-----LPQGY 317
V V QD +L F V ++M R H +R E R + +
Sbjct: 78 RVASVPQDTSLSFEFDVR---------QVVEMGRTPHRSRFDTWTETDRAAVERAMERTG 128
Query: 318 NTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALD----SRSELLVRQAVDR 372
R +SLSGG+RQR+ +ARAL Q + VL+LDE T++LD R+ LVR+ VD
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 373 LLGHHTVLVIAHHLETVMMAKR----VFLLDNGKL 403
T + H L+ +A R + LL +G++
Sbjct: 189 ---GKTAVAAIHDLD---LAARYCDELVLLADGRV 217
|
Length = 402 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 4e-22
Identities = 79/218 (36%), Positives = 111/218 (50%), Gaps = 28/218 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDS 260
VL+ ++L +++GETVAL+G SG GKSTLA+LL+ L P G + + + +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 261 LRRHVGLVSQD-ITLFS--GTVAENIG--YRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
RR + +V QD I+ + TV E I R L+ +++ E AR + V
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL---SLDKAERLARASEMLRAVDLDD- 142
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLL 374
+ + R LSGGQ QR+ +ARAL +LILDEA S LD LV QA V RLL
Sbjct: 143 ---SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD-----LVLQAGVIRLL 194
Query: 375 ------GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
L I H L V +RV ++DNG++ E
Sbjct: 195 KKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 4e-22
Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 16/220 (7%)
Query: 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
++ VL ++L I GE VA++G SG GKSTL LL L +P SG +L + +
Sbjct: 10 RYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69
Query: 254 QNI---RLDSLR-RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADE 308
+ LR + +G + Q L T EN+ L+ K ++ E R E
Sbjct: 70 SKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK--EAKERAYEMLE 127
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV-- 366
V G I R S LSGG+RQR+AIARAL S+++ DE T LD+ + ++
Sbjct: 128 KV-----GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
Query: 367 -RQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
++R L + LV+ H LE RV + +G+L
Sbjct: 183 LMLELNRELN-TSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 5e-22
Identities = 76/264 (28%), Positives = 124/264 (46%), Gaps = 44/264 (16%)
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+ V+F ++SF Y D+ L+ ++ I G ALIG +G GKST++KL ++G
Sbjct: 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKL-------ING 55
Query: 245 CILVDDHDVQNIRLD----------SLRRHVGLVSQ--DITLFSGTVAENIGY------- 285
+L DD+ I +D +R VG+V Q D TV +++ +
Sbjct: 56 LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV 115
Query: 286 -RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344
R M KI + + +++ + P +LSGGQ+QR+AIA L
Sbjct: 116 PRPEMIKIVRDVLADVGML----DYIDSEPA-----------NLSGGQKQRVAIAGILAV 160
Query: 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGK 402
++ILDE+TS LD + + + + +L + TV+ I H ++ MA +V +LD+GK
Sbjct: 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGK 220
Query: 403 LEELNRSTLLGSNHDSLVSAGLVI 426
L + S + L GL I
Sbjct: 221 LLAQGSPVEIFSKVEMLKEIGLDI 244
|
Length = 282 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 5e-22
Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 41/254 (16%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC- 245
DVK NI Y + V D +NL+I A IGPSG GKST+ + L R+++ + G
Sbjct: 6 DVKDLNI---YYGSFHAVED-VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 246 ----ILVDDHDVQNIRLD--SLRRHVGLVSQDITLF-SGTVAENI-------GYRDLMTK 291
+L+D D+ +D ++RR +G+V Q F + ++ +N+ G R+
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRN-KKD 120
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
+D E VE + R AN V+ + G LSGGQ+QRL IARA+ VL++
Sbjct: 121 LD-ELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLM 172
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV------FLL----DNG 401
DE SALD S L + ++ L +T++++ H+++ A RV F L G
Sbjct: 173 DEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQ---QAARVSDQTAFFNLEATGKPG 229
Query: 402 KLEELNRSTLLGSN 415
+L E++ + + SN
Sbjct: 230 RLVEIDDTEKIFSN 243
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 5e-22
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 32/232 (13%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L +NL I E A+IGPSG GKST K L + L+G + + ++ ++D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEHTAR-TANADEFVR 311
LR+++G+V Q F ++ +N+ Y K + E VE + + A DE
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
L + SLSGGQ+QRL IARAL N VL++DE TSALD S + + +
Sbjct: 148 RLHT--------QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 372 RLLGHHTVLVIAHHLETVMMAKRV------FLLDNGKLEELNRSTLLGSNHD 417
+L +T++++ H+++ A RV F + G+L E N + + SN D
Sbjct: 200 KLKEKYTIVIVTHNMQ---QAARVSDQTAFFYM--GELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 5e-22
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 12/221 (5%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + +L L+ + GE A++GP+G GK+TL LL + P SG + +
Sbjct: 36 NVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93
Query: 252 DVQNIRLDS-LRRHVGLVS--QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
LR+ +GLVS ++ I + + + TA A +
Sbjct: 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQ 153
Query: 309 FVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-ELLV 366
++ L H+ R SLS G+++R+ IARAL ++ +LILDE LD + E L+
Sbjct: 154 WL--LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211
Query: 367 RQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLE 404
+ + +L + HH E + LL G++
Sbjct: 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 5e-22
Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 27/224 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDV--QNIR 257
L +++ I ALIGPSG GKST + L R+ D + G + +D D+ +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENIGYR-----DLMTKIDMERVEHTARTANADEFV-R 311
L LR+ VG+V Q F ++ ENI Y D+ T + + R+ DE V R
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGL-LARLLGRDDKDAEDELVER 179
Query: 312 TLPQG-----YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+L Q N + LSGGQ+QRL IAR L + V+++DE SALD + +
Sbjct: 180 SLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI 239
Query: 367 RQAVDRLLGHHTVLVIAHHLETVMMAKRV-----FLLDNGKLEE 405
++ L +TV+V+ H+++ A R+ L G+L E
Sbjct: 240 EDLIEELAEEYTVVVVTHNMQ---QAARISDQTAVFLTGGELVE 280
|
Length = 305 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 6e-22
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
++ ++L +R GE V LIGP+G GK+TL L+ Y P SG ++ D+ +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-PHRIA 77
Query: 264 HVGLVS--QDITLFSG-TVAENI-----GYRDLMTKIDMERVEHTARTANAD-----EFV 310
+G+ Q LF G TV EN+ L + R R A EFV
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
+LS GQ++RL IARAL +L+LDE + L+ + + +
Sbjct: 138 GLGE-----LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 371 DRL--LGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
L G T+L+I H ++ VM +A R+ +L+ G++
Sbjct: 193 RELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 9e-22
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 195 FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL---LRLYDPLSGCILVDDH 251
K + +L+ ++LH+ +G+ +A++G SG GK+TL + + SG IL +
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG- 71
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
Q + D ++ V V QD L G TV E + Y + + R A E V
Sbjct: 72 --QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTY---TAILRLPRKSSDAIRKKRVEDV 126
Query: 311 RTLPQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
L T IG +SGG+R+R++IA L + VLILDE TS LDS + L +
Sbjct: 127 L-LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 370 VDRLL-GHHTVLVIAHHLETVM--MAKRVFLLDNGKL 403
+ +L + V++ H + + + R+ LL +G++
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 1e-21
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+D ++L I GE AL+G SG GKSTL ++L P +G I++D D+ ++ +R
Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQR 91
Query: 264 HVGLVSQDITLFSG-TVAENIGY---RDLMTKIDM-ERVEHTARTANADEFVRTLPQGYN 318
+ ++ Q LF TV +NI + +D + K ++ RV + EF + P
Sbjct: 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH--- 148
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS----RSELLVRQAVDRLL 374
LSGGQRQR+A+AR+L + +L+LDE ALD R +L V ++R +
Sbjct: 149 --------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER-V 199
Query: 375 GHHTVLVIAHHLETVMMAKRVFLLDNGK 402
G V+V E + MA R+ +++ GK
Sbjct: 200 GVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
|
Length = 377 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 2e-21
Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 34/237 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N++ Y + L+ +NL I + ALIGPSG GKST + L R+ D + G +
Sbjct: 9 NLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV 66
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
L+D ++ + +D LR+ VG+V Q F ++ +N+ Y R+
Sbjct: 67 LLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG--------PRIHGIKDKK 118
Query: 305 NADEFVR------TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
D+ V L + LSGGQ+QRL IAR + V+++DE TSAL
Sbjct: 119 ELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSAL 178
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV------FLLDNGKLEELNRS 409
D S L + + L +T++++ H+++ A RV FL+ G L E N++
Sbjct: 179 DPISTLKIEDLMVELKKEYTIVIVTHNMQ---QASRVSDYTAFFLM--GDLIEFNKT 230
|
Length = 251 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 2e-21
Identities = 63/209 (30%), Positives = 85/209 (40%), Gaps = 72/209 (34%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD ++L +R GE AL+G +G GKSTL K+L LY P SG I
Sbjct: 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI----------------- 57
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
L G RD AR A + + Q
Sbjct: 58 ----------LVDGKEVSFASPRD-------------ARRAG----IAMVYQ-------- 82
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH------- 376
LS G+RQ + IARAL +N+ +LILDE T+AL V+RL
Sbjct: 83 ----LSVGERQMVEIARALARNARLLILDEPTAALTPAE-------VERLFKVIRRLRAQ 131
Query: 377 -HTVLVIAHHLETVMM-AKRVFLLDNGKL 403
V+ I+H L+ V A RV +L +G++
Sbjct: 132 GVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-21
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
F+ +D ++ ++ GE L+GP+G GK+T ++L L +P +G VD DV
Sbjct: 10 RFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV 69
Query: 254 QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRT 312
++ RR +G VS L+ T EN+ Y + ++ TA +E
Sbjct: 70 VKEPAEARRR-LGFVSDSTGLYDRLTARENLEYFA-----GLYGLKGDELTARLEELADR 123
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
L G + R S G RQ++AIARAL + VL+LDE T+ LD + +R+ + +
Sbjct: 124 L--GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 373 LL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403
L +L H ++ V + RV +L G++
Sbjct: 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 3e-21
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 23/214 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NIS K+ D ++LD LNL I G+ A+IG SG GKSTL ++ L SG + ++
Sbjct: 3 NISKKFGDK--VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 252 DVQNIR----LDSLRRHVGLVSQDITLF-SGTVAENI----GYRDLMTKIDMERVEHTAR 302
+ + R +G + Q+ L + TV EN+ Y+ L K E+ +
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEAL- 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
E V L I LSGG++QR+A+ARA+ + +++ DE T +LD ++
Sbjct: 120 -----EKVG-LNLKLKQKI----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN 169
Query: 363 ELLVRQAVDRLLGHHTVLVIA-HHLETVMMAKRV 395
V + L ++I H E A RV
Sbjct: 170 RDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 3e-21
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 26/206 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDVQNIRL 258
+L +NL I ALIGPSG GKST + L R+ D + G I +D D+ + +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 259 D--SLRRHVGLVSQDITLFSGTVAENIGY------RDLMTKIDMERVEHTARTANA-DEF 309
D LR+ VG+V Q F ++ +N+ Y D I+ ERVE + + A DE
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE-ERVEESLKAAALWDEV 136
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
L + LSGGQ+QRL IAR + + V+++DE SALD S +
Sbjct: 137 KDKLDKS--------ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 370 VDRLLGHHTVLVIAHHLETVMMAKRV 395
+ +L +T++++ H+++ A RV
Sbjct: 189 IHKLKEDYTIVIVTHNMQ---QATRV 211
|
Length = 250 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (232), Expect = 3e-21
Identities = 73/241 (30%), Positives = 119/241 (49%), Gaps = 30/241 (12%)
Query: 164 DLTKFKSKVIEKPDAVSLDHINGDV-KFCNISFKYADNMPLVLDQLNLHIRAGETVALIG 222
+L +F +K + D + D + +V + N +F Y + VL LNL I+ + A IG
Sbjct: 56 ELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIG 115
Query: 223 PSGGGKSTLAKLLLRLYDPLSGC-------ILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275
PSG GKST + L +L D + G L + + I LR +G+V Q T F
Sbjct: 116 PSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175
Query: 276 SGTVAENIGY---------RDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRG 325
++ +N+ Y R ++ KI VE + ++A DE L + G
Sbjct: 176 EMSIFDNVAYGPRNNGINDRKILEKI----VEKSLKSAALWDEVKDDLDKA--------G 223
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH 385
++LSGGQ+QRL IARA+ VL++DE TSALD + + + + L ++++++ H
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHS 283
Query: 386 L 386
+
Sbjct: 284 M 284
|
Length = 329 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 3e-21
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 9/210 (4%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GC 245
K N++ Y L +N+ I + ALIG SG GKST + R+ D ++ G
Sbjct: 4 KTTNLNLFYGKKQALF--DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
+ ++ DV+N + +LR++VG+V Q +F ++ ENI Y + + + E A +
Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVD 121
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ V L + + +LSGGQ+QRL IARAL +L+LDE TSALD S +
Sbjct: 122 CLQKV-GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVMMAKRV 395
+ + + L + +++++ H+++ KRV
Sbjct: 181 IEELLKELSHNLSMIMVTHNMQ---QGKRV 207
|
Length = 246 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 6e-21
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 16/222 (7%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S+ Y D P L+ +NL I+ GE + +IG +G GKSTLA L L P G +L
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 248 VDDHDVQNI-RLDSLRRHVGLVSQDI-TLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
V D + +L +R+ VG+V Q+ T F G TV E++ + + + +E R
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP--ENLCLPPIEIRKRV- 117
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
D + + H P+ +LSGGQ Q +A+A L LI DE TS LD S +
Sbjct: 118 --DRALAEIGLEKYRHRSPK--TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 365 LVRQAVDRLLGHH---TVLVIAHHLETVMMAKRVFLLDNGKL 403
V + + +L H T++ I H+LE + A R+ ++D GK+
Sbjct: 174 AVLERIKKL--HEKGKTIVYITHNLEELHDADRIIVMDRGKI 213
|
Length = 274 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 6e-21
Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 39/217 (17%)
Query: 200 NMPLVLDQLNLHIRAGETV-------------ALIGPSGGGKSTLAKLLLRLYD-----P 241
N + L+QLN+H V A+IGPSG GKST+ + + R++D
Sbjct: 2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 242 LSGCILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSG-TVAENI--GYRDLMTKIDMER 296
++G IL+DD D+ + +D S+RR VG+V Q F ++ +N+ GY+
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK---------- 111
Query: 297 VEHTARTANADEFVRT------LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350
+ + ADE V + L + LSGGQ+QRL IAR + V++
Sbjct: 112 LNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVIL 171
Query: 351 LDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387
+DE SALD S L + + ++ L +T++++ H+++
Sbjct: 172 MDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 8e-21
Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 34/223 (15%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L+ ++L E ALIGPSG GKSTL + + R+ D ++G I+ + H++ + R D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 260 S--LRRHVGLVSQDITLFSGTVAENI-------GYRDLMTKIDMERVEHTARTANA-DEF 309
+ LR+ +G+V Q F ++ EN+ G +D +D E VE + + A+ DE
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKD-KQVLD-EAVEKSLKGASIWDEV 138
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
L +++ +G LSGGQ+QR+ IAR L + +++LDE TSALD S + +
Sbjct: 139 KDRL---HDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190
Query: 370 VDRLLGHHTVLVIAHHLETVMMAKRV-----FLLDNGKLEELN 407
+ L +T+L++ ++ A R+ F LD G L E N
Sbjct: 191 LLGLKDDYTMLLVTRSMQ---QASRISDRTGFFLD-GDLIEYN 229
|
Length = 252 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 1e-20
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y +L +NL I E A IGPSG GKST + R+ D + C +
Sbjct: 10 NLNLWYGSKQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 247 LVDDHDVQNIRLDS--LRRHVGLVSQDITLFSGTVAENIGYRDLM-------TKIDMERV 297
+D DV ++ + LR VG+V Q F ++ +N+ Y + K+D E V
Sbjct: 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD-EIV 126
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E + + L + + LSGGQ+QRL IARA+ ++L++DE SA
Sbjct: 127 EKSLTSVG-------LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179
Query: 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407
LD + ++ + L + T++V+ H ++ ++ RV +G++ E N
Sbjct: 180 LDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230
|
Length = 251 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-20
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 10/191 (5%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+ + D +L+ ++ +RAGE + GPSG GKSTL K++ L P SG +L +
Sbjct: 12 NVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
D+ ++ + R+ V +Q TLF TV +N+ + +I ++ + + + F
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFP---WQIRNQQPDPAIFLDDLERF-- 124
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
LP T + + LSGG++QR+++ R L VL+LDE TSALD ++ V + +
Sbjct: 125 ALPD---TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIH 181
Query: 372 RLLGHHTVLVI 382
R + + V+
Sbjct: 182 RYVREQNIAVL 192
|
Length = 225 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-20
Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 35/232 (15%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
I+ Y + L + L GET+ L+GPSG GKS+L ++L L P SG + + +
Sbjct: 7 GINCFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64
Query: 252 --------DVQNIRLDSLRRHVGLVSQDITLFSG-TVAEN-----IGYRDLMTKIDMERV 297
+ IR LRR+VG+V Q L+ TV +N L + R
Sbjct: 65 HFDFSKTPSDKAIRE--LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARA 122
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E + P LSGGQ+QR+AIARAL VL+ DE T+A
Sbjct: 123 EKLLERLRLKPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
Query: 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAK----RVFLLDNGKLEE 405
LD + + L VI H V +A+ RV ++NG + E
Sbjct: 172 LDPEITAQIVSIIRELAETGITQVIVTH--EVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-20
Identities = 63/212 (29%), Positives = 116/212 (54%), Gaps = 25/212 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
V++ ++L + +GE V L+GP+G GK+T +++ L P SG IL+DD D+ + + R
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78
Query: 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTAN-ADEFVRTLPQGYNTH 320
+G + Q+ ++F TV +NI + + D+++ E +EF H
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF----------H 128
Query: 321 IGP----RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL--LVRQAVDR 372
I + SLSGG+R+R+ IARAL N ++LDE + +D + ++ +++ DR
Sbjct: 129 ITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188
Query: 373 LLGHHTVLVIAHHL-ETVMMAKRVFLLDNGKL 403
+G VL+ H++ ET+ + R +++ +GK+
Sbjct: 189 GIG---VLITDHNVRETLDICDRAYIISDGKV 217
|
Length = 243 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-20
Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ + Y+ + L+ +N +A+IGP+G GKSTL + + P SG +L+
Sbjct: 8 DLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66
Query: 252 DVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
+ + +R+ VGLV Q D +FS TV ++I + + +D E V H
Sbjct: 67 PITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSA 121
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ L G LSGG+++R+AIA + VL+LDE T+ LD + +
Sbjct: 122 LHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 370 VDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKL 403
++ L + TV+ H L+ V MA ++++D G++
Sbjct: 180 LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216
|
Length = 277 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 1e-20
Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 21/212 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K ++SF Y N ++ +++ I + A+IGPSG GKST K L R+ + L G +
Sbjct: 8 IKVKDLSFYY--NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPVK 64
Query: 248 VD---DHDVQNI-----RLDSLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDME 295
V+ D QNI ++ LRR +G+V Q F ++ EN+ Y + + D++
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ +A A L Q + LSGGQ+QRL IARAL VL++DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 356 SALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387
SALD + + V + + L T+ ++ H+++
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-20
Identities = 65/212 (30%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259
+L + L ++ GETVA++GPSG GKSTL +L L DP SG + + + + R
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 260 SLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
RHVG V Q L + T EN+ +++ A A + + G
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENV-----ALPLELRGESSADSRAGAKALLEAVGLGKR 139
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL---- 374
P LSGG++QR+A+ARA VL DE T LD + + D L
Sbjct: 140 LTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG---DKIADLLFALNR 194
Query: 375 GHHTVLVIAHHLETVMM-AKRVFLLDNGKLEE 405
T LV+ H + R L +G+L E
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-20
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNIRLDS- 260
++N I + A+IGPSG GKST + + R+ D + +G ++ D D+ D
Sbjct: 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116
Query: 261 -LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANA-DEFVRTL 313
LR+ +G+V Q F ++ +NI Y + I+ E VE + R A DE L
Sbjct: 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL 176
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ LSGGQ+QRL +AR L +L+LDE TSALD ++ + + L
Sbjct: 177 DKN--------ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
Query: 374 LGHHTVLVIAHHLETVMMAKRV 395
G +T++++ H+++ A RV
Sbjct: 229 RGSYTIMIVTHNMQ---QASRV 247
|
Length = 286 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 3e-20
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 28/218 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L ++L E ALIGPSG GKST + L R+ D ++G I + ++ ++D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY---------RDLMTKIDMERVEHTARTANADE 308
LR+ VG+V Q T F +V +N+ Y ++L ID +RVE + + A
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKEL---ID-QRVEESLKQA---- 131
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
+ + ++ + SGGQ+QR+ IARAL V++LDE TSALD S + +
Sbjct: 132 ---AIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 369 AVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
+ L +T +++ H+L+ ++ + L NG L E
Sbjct: 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226
|
Length = 251 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 3e-20
Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 21/207 (10%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDSLRR 263
+ + A+ G SG GK+TL +L+ L P G I+++ + + I L +R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+G V Q+ LF +V N+ Y M+R + R + + + L G+
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRY-------GMKRARPSERRISFERVIELLGIGHLLGRL 128
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELLVRQAVDRLLGHHT-- 378
P LSGG++QR+AI RAL + +L++DE +ALD + E+L ++RL
Sbjct: 129 PG--RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL--PYLERLHAEFGIP 184
Query: 379 VLVIAHHL-ETVMMAKRVFLLDNGKLE 404
+L ++H L E + +A RV +L++G++
Sbjct: 185 ILYVSHSLQEVLRLADRVVVLEDGRVA 211
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 4e-20
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 45/244 (18%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+ N+S Y D +L+ ++L + GE + L+G +G GKSTL K+L +P SG
Sbjct: 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG-- 58
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI--GYRDL------MTKIDMERV 297
+ R VG +SQ+ L TV + + G+ +L + +
Sbjct: 59 --------EVTRPKGLR-VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 298 EHTARTANADEFVRTLPQGYN--------------THIGPRGSSLSGGQRQRLAIARALY 343
+ E + G+ SSLSGG R+R+A+ARAL
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHH---LETVMMAKRVFLLD 399
+ +L+LDE T+ LD S + D L + TV+V++H L+ V A + LD
Sbjct: 170 EEPDLLLLDEPTNHLDLES---IEWLEDYLKRYPGTVIVVSHDRYFLDNV--ATHILELD 224
Query: 400 NGKL 403
GKL
Sbjct: 225 RGKL 228
|
Length = 530 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 4e-20
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 39/238 (16%)
Query: 188 VKFCNISFKYADNMPLV---LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+KF N+ + Y+ P+ LD ++ + G VAL+G +G GKSTL + L P SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 245 CILVDDHDVQ----NIRLDSLRRHVGLVSQ--DITLFSGTVAE-------NIGYRDLMTK 291
I + + + N L LR+ V LV Q + LF TV + N G+ + K
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 292 ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+++V + + F LSGGQ +R+AIA +
Sbjct: 123 EKALKWLKKVGLSEDLISKSPF-----------------ELSGGQMRRVAIAGVMAYEPE 165
Query: 348 VLILDEATSALDSRSELLVRQA-VDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
+L LDE + LD + Q D HTV+++ H+++ V A V +L++GKL
Sbjct: 166 ILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-20
Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 29/233 (12%)
Query: 188 VKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+ N+S+ Y P L +NL I G A IG +G GKST+ +LL L+ P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 245 CILVDDHDV----QNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVE 298
+ VDD + +N + +R+ VGLV Q + LF TV +++ + + E E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 299 HTARTANA-----DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
AR A + P LSGGQ +R+AIA L +L+LDE
Sbjct: 123 ALAREKLALVGISESLFEKNP-----------FELSGGQMRRVAIAGILAMEPKILVLDE 171
Query: 354 ATSALD--SRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
T+ LD R EL+ G VLV H ++ V A V++L+ GKL
Sbjct: 172 PTAGLDPKGRKELMTLFKKLHQSGMTIVLV-THLMDDVANYADFVYVLEKGKL 223
|
Length = 280 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 5e-20
Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 31/212 (14%)
Query: 209 NLHIRAGETV------ALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD---HDV-QNIRL 258
N + A T+ AL GPSG GK++L ++ L P G I ++ D + I L
Sbjct: 12 NFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL 71
Query: 259 DSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
+R +G V QD LF TV N+ Y M K A D+ V L G
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRY--GMWKS---------MRAQFDQLVALL--GI 118
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELLVRQAVDRLLG 375
+ +LSGG++QR+AI RAL +L++DE ++LD + E+L ++RL
Sbjct: 119 EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL--PYLERLRD 176
Query: 376 HHT--VLVIAHHLETVM-MAKRVFLLDNGKLE 404
+L ++H L+ V+ +A RV +L+NGK++
Sbjct: 177 EINIPILYVSHSLDEVLRLADRVVVLENGKVK 208
|
Length = 352 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 5e-20
Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 20/211 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-- 245
+K N++ Y + L +++ I ALIGPSG GKST + L R+ D + C
Sbjct: 13 IKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 246 ---ILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLM---TKIDMER- 296
+ ++ D+ +D LR++VG+V Q F ++ +N+ Y + K D++
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV 130
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
VE+ R+A L + + SLSGGQ+QRL IAR L +++ DE TS
Sbjct: 131 VENALRSA-------ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183
Query: 357 ALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387
ALD S + + L +T++++ H+++
Sbjct: 184 ALDPISTARIEDLIMNLKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 7e-20
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 30/213 (14%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-R 262
L ++L + GE VAL+G +G GK+TL K ++ L P SG I+ D D+ + R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 263 RHVGLVSQDITLFSG-TVAENI---GY---RDLMTKIDMERVEHTARTANADEFVRTLPQ 315
+ V + +F TV EN+ Y + D+E V + F R L +
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV--------YELFPR-LKE 128
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD---- 371
N R +LSGG++Q LAIARAL +L+LDE + L + +V + +
Sbjct: 129 RRNQ----RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKE 181
Query: 372 -RLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402
R G T+L++ + + +A R ++L+NG+
Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGR 214
|
Length = 237 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 8e-20
Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 29/210 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV------------DDH 251
VL ++L + AGE VAL GPSG GKSTL K L Y P SG ILV
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER-VEHTARTANADEFV 310
+V +R R+ +G VSQ + V + +++ + +ER V A A A E +
Sbjct: 83 EVLEVR----RKTIGYVSQFL-----RVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 311 RTL--PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
L P+ H+ P ++ SGG++QR+ IAR + +L+LDE T++LD+ + +V +
Sbjct: 134 ARLNIPERL-WHLPP--ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190
Query: 369 AVDRLLGHHTVLV-IAHHLETV-MMAKRVF 396
+ L+ I H E ++A RV
Sbjct: 191 LIAEAKARGAALIGIFHDEEVRELVADRVM 220
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 9e-20
Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++S Y L+ ++L I +GE V ++GPSG GK+TL L+ P G I ++
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ I R G+V Q+ L V +N+ + + + +E R A + +
Sbjct: 67 --RRIEGPGAER--GVVFQNEALLPWLNVIDNVAF-----GLQLRGIEKAQRREIAHQML 117
Query: 311 RTLP-QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-----EL 364
+ +G LSGG RQR+ IARAL +L+LDE ALD+ + EL
Sbjct: 118 ALVGLEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 365 LVRQAVDRLLGHHTVLVIAHHL-ETVMMAKRVFLLDNG 401
L+ + VL+I H + E + +A R+ +L G
Sbjct: 175 LLDLWQET---GKQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 9e-20
Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 47/249 (18%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----- 241
+VK ++SF + +D ++ ++ GE + ++G SG GKS LAK ++ L
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 242 LSGCILVDDHDVQNI---RLDSLR-RHVGLVSQD------ITLFSGTVAENIG--YRDLM 289
+ G IL D D+ ++ L +R + + ++ QD + T+ + I R
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLHG 119
Query: 290 TKIDMERVEHTARTA-------NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342
+ + + A + + +++ P H LSGG RQR+ IA AL
Sbjct: 120 KGLSKKEAKERAIELLELVGIPDPERRLKSYP-----H------ELSGGMRQRVMIAMAL 168
Query: 343 YQNSSVLILDEATSALDSRS-----ELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVF 396
N +LI DE T+ALD +LL ++ +++I H L V +A RV
Sbjct: 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQREK---GTALILITHDLGVVAEIADRVA 225
Query: 397 LLDNGKLEE 405
++ G++ E
Sbjct: 226 VMYAGRIVE 234
|
Length = 316 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-19
Identities = 56/179 (31%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ Y +L+ L+L + G+ ALIGP+G GKSTL K RL P SG + + D
Sbjct: 7 NLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----------RDLMTKIDMERVEHT 300
+ + L R + L+ Q G TV E + Y R ++ D RV
Sbjct: 65 PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR--LSAEDNARVNQA 122
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ R + LSGGQRQR +A L Q++ V++LDE T+ LD
Sbjct: 123 MEQTRINHLADR-----------RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
|
Length = 255 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 1e-19
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 24/228 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N++ Y D L+ +N+ I ALIGPSG GKST + L R+ D + G +
Sbjct: 12 NLNLFYTDFK--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV 69
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
+ + ++ + D LRR +G+V Q F ++ +NI Y ++ T
Sbjct: 70 IYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYG--------PKIHGTKDKK 121
Query: 305 NADEFVR------TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
DE V L + SLSGGQ+QRL IAR L +V+++DE TSAL
Sbjct: 122 KLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSAL 181
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
D S + + + L +T++++ H+++ ++ R NG +EE
Sbjct: 182 DPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229
|
Length = 254 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 23/225 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
V N++ Y D ++ +NL I GE V +GPSG GKSTL +++ L D SG +
Sbjct: 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTA 301
+ + + ++ R VG+V Q L+ +VAEN+ + + E RV A
Sbjct: 61 FIGEKRMNDV--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ P+ +LSGGQRQR+AI R L SV +LDE S LD+
Sbjct: 119 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
Query: 362 SELLVRQAVDRL---LGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
+ +R + RL LG + V +E + +A ++ +LD G++
Sbjct: 168 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
Length = 369 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 1e-19
Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 34/249 (13%)
Query: 192 NISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250
N+ FKY + L+ ++ I GE V++IG +G GKST A+L+ L++ G + +D
Sbjct: 9 NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68
Query: 251 HDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--------RDLMTKIDMERVEHT 300
+ + +LRR +G+V Q D TV +++ + R+ M K RV+
Sbjct: 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK----RVDEA 124
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
N +F P + LSGGQ+QR+A+A + ++ILDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 360 -SRSELL--VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK-LEELNRSTLLGSN 415
R E++ + + ++ TVL I H L+ + R+ ++ G+ ++E S L ++
Sbjct: 174 TGRQEIMRVIHEIKEKY--QLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231
Query: 416 HDSLVSAGL 424
D +V GL
Sbjct: 232 ED-MVEIGL 239
|
Length = 277 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 3e-19
Identities = 69/218 (31%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L ++L E ALIGPSG GKST + L R+ D ++G + + ++ D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 260 S--LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQG 316
LR+ VG+V Q F ++ EN+ Y + + + V DE V T L Q
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV--------LDEAVETSLKQA 132
Query: 317 -----YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
H+ SLSGGQ+QR+ IAR L V++LDE TSALD S + +
Sbjct: 133 AIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL 192
Query: 372 RLLGHHTVLVIAH--HLETVMMAKRVFLLDNGKLEELN 407
L +T++++ H H + + K F L G L E
Sbjct: 193 ELRDQYTIILVTHSMHQASRISDKTAFFL-TGNLIEFA 229
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 4e-19
Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 26/210 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
+++ Y D + +NL ++ G ALIGPSG GK+T + + R++D ++G I
Sbjct: 9 DVNIYYGDKQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLF-SGTVAENI-------GYRDLMTKIDMER 296
L+D D+ R+D ++RR VG+V Q F + +V +N+ G RD ME
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRD--RDHLMEV 124
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E + R A + V+ + + LSGGQ+QRL IARAL +L++DE TS
Sbjct: 125 AERSLRGAALWDEVKD-------RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTS 177
Query: 357 ALDSRSELLVRQAVDRLLGHHTVLVIAHHL 386
ALD S + + L T++++ H++
Sbjct: 178 ALDPASTARIEDLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-19
Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 28/208 (13%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
L +NL I+ GE ++LIG SG GKSTL L+ L P SG ++++ + D +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ--GYNTHI 321
+V Q+ +L TV ENI + ++RV + V G
Sbjct: 58 --VVFQNYSLLPWLTVRENIA-------LAVDRVLPDLSKSERRAIVEEHIALVGLTEAA 108
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELLVRQAVDRLL----- 374
R LSGG +QR+AIARAL VL+LDE ALD +R L + L+
Sbjct: 109 DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-----EELMQIWEE 163
Query: 375 GHHTVLVIAHHL-ETVMMAKRVFLLDNG 401
TVL++ H + E ++++ RV +L NG
Sbjct: 164 HRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 69/228 (30%), Positives = 101/228 (44%), Gaps = 37/228 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++F Y DN + +NL I+ GE + LIG +G GKSTLA LL LY P SG IL+D
Sbjct: 327 NVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFS------GTVAENIGYRDLMTKIDM-ERVEHTARTA 304
V + + R+ V D LF G A + ++ M ++E
Sbjct: 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL----- 440
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR--- 361
D + L LS GQ++RLA+ AL + +L+LDE + D
Sbjct: 441 -EDGRISNL-------------KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486
Query: 362 ---SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406
LL + +G T+ I+H + A R+ + NG+L EL
Sbjct: 487 EFYQVLLPLL---QEMG-KTIFAISHDDHYFIHADRLLEMRNGQLSEL 530
|
Length = 547 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 5e-19
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
L++D +++ G L+GP+G GKSTL +LL P +G + + D+ + +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR----TANADEFV-RTLPQGY 317
R V LV QD A + RD++ + R+ H + + + V R L +
Sbjct: 75 RRVALVEQDSD-----TAVPLTVRDVVA---LGRIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 318 NTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
+H+ R S+LSGG+RQR+ +ARAL Q +L+LDE T+ LD R++L V L
Sbjct: 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186
Query: 377 HTVLVIA-HHLETVMM-AKRVFLLDNGKL 403
+V A H L V +LD G++
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRV 215
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 5e-19
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 184 INGDVKF-CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-- 240
+ C + + N V D ++ IR E IGPSG GKST+ + L R+ D
Sbjct: 3 SEAPIVMDCKLDKIFYGNFMAVRDS-HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLV 61
Query: 241 ---PLSGCILVDDHDVQNIRLDSL--RRHVGLVSQDITLFSGTVAENI--GYRDLMTKID 293
G + DV +D + RR++G+V Q FS ++ +N+ G R K D
Sbjct: 62 KGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGD 121
Query: 294 M-ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
+ +RV+H + A + V+ + G SLSGGQ+QRL IARA+ VL+LD
Sbjct: 122 LGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174
Query: 353 EATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV 395
E SALD + V + + L +T+ ++ H+++ A RV
Sbjct: 175 EPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ---QAIRV 214
|
Length = 261 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-19
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 21/221 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+++ Y+D L +N++I+ GE A++G +G GKSTL + L + P SG IL D
Sbjct: 10 ELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68
Query: 252 DVQNIR--LDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+ R L LR VG+V Q D LFS +V +++ + + K+ + V A
Sbjct: 69 PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKR 128
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS----- 362
+ L + TH LS GQ++R+AIA L VL+LDE T+ LD
Sbjct: 129 TGIEHL-KDKPTH------CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 363 ELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGK 402
+LLV + L T+++ H ++ V + VF++ G+
Sbjct: 182 KLLVEMQKELGL---TIIIATHDIDIVPLYCDNVFVMKEGR 219
|
Length = 283 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 5e-19
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NI+ ++ N V+D LNL I+ G V L+GPSG GK+T+ +L+ L P G I +D
Sbjct: 11 NITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE 68
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
DV + + +R + +V Q LF ++ EN+GY M + E E R A E V
Sbjct: 69 DVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKE--ERKQRVKEALELV 124
Query: 311 -------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
R + Q +SGGQ+QR+A+ARAL VL+ DE S LD+
Sbjct: 125 DLAGFEDRYVDQ------------ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 5e-19
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 13/218 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F N+ +Y D LV+D L+ H++ GE L+GP+G GK+T ++LL L P +G I
Sbjct: 8 IDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+ V + R R+ VG+V Q L TV EN+ + A
Sbjct: 66 LCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENL--LVFGRYFGLSAAAARALVPPL 122
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
EF + L + +G LSGG ++RL +ARAL + VL+LDE T+ LD ++ L+
Sbjct: 123 LEFAK-LENKADAKVG----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
Query: 367 RQAVDRLLGH-HTVLVIAHHLETV-MMAKRVFLLDNGK 402
+ + LL T+L+ H +E + R+ +++ G+
Sbjct: 178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
Length = 306 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 6e-19
Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 4/220 (1%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G + +++ KY + VL+ ++ I G+ V L+G +G GKSTL LRL + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I +D ++ L R+ G++ Q + +FSGT +N+ D K E + A
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVG 116
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ P + + G LS G +Q + +AR++ + +L+LDE ++ LD + +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+R+ + + TV++ H +E ++ +R +++ K+ +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQ 216
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 6e-19
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 21/205 (10%)
Query: 182 DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
D+ + + N+S + D L L +LN +R GE + + G SG GK++L + L L+
Sbjct: 387 DNADHGITLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW 445
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGL--VSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
SG I S+ L + Q L GT+ E + Y + +
Sbjct: 446 GSGRI-------------SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ L + LSGG++QRLA AR L + LDEATSALD
Sbjct: 493 VLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAH 384
+E + Q + L TV+ + H
Sbjct: 548 EETEDRLYQLLKEELPDATVISVGH 572
|
Length = 604 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 7e-19
Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 24/232 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCI 246
++S Y + ++ +++ I ALIGPSG GKST + + R+ D + G I
Sbjct: 26 DLSIYYGEKR--AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83
Query: 247 LVDDHDV--QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
L + ++ NI + +LRR +G+V Q F ++ NI + K ER R +
Sbjct: 84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITH---ALKYAGER-----RKS 135
Query: 305 NADEFVR------TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
DE V L + SLSGGQ+QRL IAR L +VL+LDE SAL
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409
D S + + + L ++++++ H+++ + ++ R NG L E +++
Sbjct: 196 DPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247
|
Length = 268 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 7e-19
Identities = 79/285 (27%), Positives = 122/285 (42%), Gaps = 26/285 (9%)
Query: 128 LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL--FDLTKFKSKVIEKPDAVSLDHIN 185
+ + L+F+ P+ + A ++ +L +K+ +
Sbjct: 265 AATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTL- 323
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+ N+ F Y DN + +NL I+ GE V LIG +G GKSTLA LL LY P SG
Sbjct: 324 ---ELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDMERVEHTARTA 304
IL+D V +L+ R+ V D LF + E L+ K ++R+E +T+
Sbjct: 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW-LQRLELAHKTS 438
Query: 305 -NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
N F LS GQ++RLA+ AL + +L+LDE + D
Sbjct: 439 LNDGRFSNL--------------KLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484
Query: 364 LLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKLEEL 406
Q + LL T+ I+H + A R+ + NG+L EL
Sbjct: 485 REFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-18
Identities = 72/232 (31%), Positives = 99/232 (42%), Gaps = 35/232 (15%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV--D 249
I+ Y + L + L GET+ L+GPSG GKS+L ++L L P SG + + +
Sbjct: 7 GINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64
Query: 250 DHDVQNIRLD----SLRRHVGLVSQDITLFSG-TVAENI--------GYRDLMTKIDMER 296
D D LRR+VG+V Q L+ TV EN+ G E+
Sbjct: 65 HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEK 124
Query: 297 VEHTARTAN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ R AD + LSGGQ+QR+AIARAL VL+ DE T
Sbjct: 125 LLKRLRLKPYADRYPL---------------HLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 356 SALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM--MAKRVFLLDNGKLEE 405
+ALD + + L VI H V A RV ++NG + E
Sbjct: 170 AALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 2e-18
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264
+L I GE ++G SG GKST+ +LL RL +P G +L+D D+ I L R+
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ +V Q L TV +N + + I+ E A A + Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP----- 162
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVLV 381
LSGG RQR+ +ARAL N +L++DEA SALD ++ + +L H T++
Sbjct: 163 --DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 382 IAHHLETVM-MAKRVFLLDNGKLEEL 406
I+H L+ M + R+ ++ NG++ ++
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQV 246
|
Length = 400 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 2e-18
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 23/210 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
++F Y L +N+ + + ALIGPSG GKST + R++D G I
Sbjct: 21 KLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 247 LV--DDHDVQNIRLDSL--RRHVGLVSQDITLFSGTVAENIGY----RDLMTK-IDMERV 297
++ D+ ++ + +D + R + +V Q F ++ EN+ Y R + + I ERV
Sbjct: 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERV 138
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E+ R A + V+ +G +LSGGQ+QRL IARAL + +L+ DE TSA
Sbjct: 139 ENALRNAALWDEVKD-------RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSA 191
Query: 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387
LD + + + + L T+L++ H+++
Sbjct: 192 LDPIATASIEELISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 2e-18
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 18/205 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ +S Y D V++ L+ + +GE L+GP+G GKST+A+++L + P +G I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITL-FSGTVAENI---GYRDLMTKIDMERVEHTART 303
V V R R +G+V Q L TV EN+ G M+ ++E V
Sbjct: 100 VLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----I 153
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ EF R L + R S LSGG ++RL +ARAL + +LILDE T+ LD +
Sbjct: 154 PSLLEFAR-LESKADA----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 364 LLVRQAVDRLLGH-HTVLVIAHHLE 387
L+ + + LL T+L+ H +E
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFME 233
|
Length = 340 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 26/254 (10%)
Query: 187 DVKFCNISFKYADNMP---LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
D+ F + +Y P L +N+ I +G VA+IG +G GKSTL + L L P S
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 244 GCILVDDHDVQ----NIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERV 297
G + + + + N +L LR+ VG+V Q + LF TV ++I + + + E
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 298 EHTARTANADEFVRT--LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ AR E + LP+ P LSGGQ +R+AIA L VL+LDE T
Sbjct: 122 KQKAR-----EMIELVGLPEELLAR-SP--FELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
Query: 356 SALDSRSELLVRQAVDRLLGHH----TVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410
+ LD + + + +L H T +++ H +E A ++ ++ G +
Sbjct: 174 AGLDPKGRKEMMEMFYKL--HKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 411 LLGSNHDSLVSAGL 424
+ ++ D L + GL
Sbjct: 232 EIFADPDELEAIGL 245
|
Length = 290 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-18
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 23/242 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ F+Y D L L+L I G AL+GP+G GKSTL L +Y P G + V
Sbjct: 9 DLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67
Query: 252 DVQNIRLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTAN 305
+V +R VGLV QD +FS TV +++ + + +D RVE +
Sbjct: 68 EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVR 127
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+F P H LS GQ++R+AIA L + V++LDE + LD R +
Sbjct: 128 MWDFRDKPPY----H-------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 366 VRQAVDRLLGHHTVLVIA-HHLETVM-MAKRVFLLDNGK-LEELNRSTLLGSNHDSLVSA 422
+ + +DRL +++A H ++ A +V +L G+ L E ++S L ++ D + A
Sbjct: 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL--TDEDIVEQA 234
Query: 423 GL 424
GL
Sbjct: 235 GL 236
|
Length = 274 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 5e-18
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 40/227 (17%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VL ++L AG+ +++IG SG GKST + + L P +G I V+ +++ R
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 258 -------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDL----MTKID-MERVEHTARTA 304
L LR +G+V Q L+S TV EN+ + ++K + +ER E
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
E P + LSGGQ+QR+AIARAL V++ DE TSALD EL
Sbjct: 141 GIAEKADAYP-----------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD--PEL 187
Query: 365 LVRQAVDRLLGH-----HTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ V +++ T++V+ H + ++ V L GK+EE
Sbjct: 188 V--GEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232
|
Length = 256 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 5e-18
Identities = 79/322 (24%), Positives = 137/322 (42%), Gaps = 47/322 (14%)
Query: 108 LFILCGGSLLVSG--GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165
F+L G +L + S D ++ +F+ +L+++ P++ + A Q + A +RL D
Sbjct: 248 FFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307
Query: 166 T-KFKS-----KVIEKPDAVSLDHIN--GDVKFCNISFKYAD---NMPLVLDQLNLHIRA 214
+F ++ + + + L H ++ ++ + L ++L I
Sbjct: 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQ 367
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
G+ V ++G +G GKSTLAKL LY P G IL+D V D R + D L
Sbjct: 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHL 427
Query: 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS----LSG 330
F + + G EH A NA ++++ L I G S LS
Sbjct: 428 FDDLIGPDEG-------------EH-ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473
Query: 331 GQRQRLAIARALYQNSSVLILDEATSALDS------RSEL---LVRQAVDRLLGHHTVLV 381
GQ++RLA+ A ++ +L+ DE + D EL L RQ T+++
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG-------KTIII 526
Query: 382 IAHHLETVMMAKRVFLLDNGKL 403
I+H + +A ++ L G +
Sbjct: 527 ISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 6e-18
Identities = 55/204 (26%), Positives = 77/204 (37%), Gaps = 55/204 (26%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S D L+ L+ I+ G+ + + GPSG GKS+L + L L+ SG I
Sbjct: 1 IELENLSLATPDGRVLL-KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+ + + Q L GT+ E + Y
Sbjct: 59 --------GMPE--GEDLLFLPQRPYLPLGTLREQLIY---------------------- 86
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
P LSGG++QRLA AR L + LDEATSALD SE +
Sbjct: 87 ---------------PWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY 131
Query: 368 QAVDRLL------GHHTVLVIAHH 385
Q + L GH L H
Sbjct: 132 QLLKELGITVISVGHRPSLWKFHD 155
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 7e-18
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-R 262
+L ++L + GE ++G +G GK+TL K L+ L SG I +D D+ + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+ V Q +F TV EN+ + R+ + + L +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENL-------LTGLAA--LPRRSRKIPDEIYELFPVLKEML 125
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL--LGHHTV 379
G RG LSGGQ+Q+LAIARAL +L+LDE T + + + + RL G +
Sbjct: 126 GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAI 185
Query: 380 LVIAHHLETVM-MAKRVFLLDNG 401
L++ +L+ +A R ++++ G
Sbjct: 186 LLVEQYLDFARELADRYYVMERG 208
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 8e-18
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 21/219 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N +F +A ++P L+ + I G VA++G G GKS+L LL D + G +
Sbjct: 641 NATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV----- 695
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADEFV 310
++ V V Q + + ++ ENI + + L K + +E A + +
Sbjct: 696 --------HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD----L 743
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LP G T IG +G +LSGGQ+QR+++ARA+Y N+ + + D+ SA+D+ + + V
Sbjct: 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
Query: 371 ---DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406
+ +L + T +++ H + + + ++ GK+ E+
Sbjct: 804 IGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 44/203 (21%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S Y L L L+ I G+ +A++GP+G GKSTL KLL PLSG
Sbjct: 326 NVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG------- 377
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY--RDLMTKIDMERVEHTARTANAD-- 307
+++ + IGY + + V D
Sbjct: 378 --------TVKVGETV--------------KIGYFDQHRDELDPDKTVLEELSEGFPDGD 415
Query: 308 -EFVRTLPQGYNT---HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ VR + LSGG++ RL +A+ L Q ++L+LDE T+ LD S
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES- 474
Query: 364 LLVRQAVDRLLGHH--TVLVIAH 384
+A++ L TVL+++H
Sbjct: 475 ---LEALEEALLDFEGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 1e-17
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 19/221 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ +S Y D +V++ L+ I GE L+GP+G GKST+A++LL + P G I
Sbjct: 5 IDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITL-FSGTVAENI---GYRDLMTKIDMERVEHTART 303
V V + R R +G+V Q L TV EN+ G M+ ++E V
Sbjct: 63 VLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----I 116
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ EF R L + R + LSGG ++RL +ARAL + +LILDE T+ LD +
Sbjct: 117 PSLLEFAR-LESKADV----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 364 LLVRQAVDRLLGH-HTVLVIAHHLETV-MMAKRVFLLDNGK 402
L+ + + LL T+L+ H +E + R+ +L++G+
Sbjct: 172 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-17
Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N++ ++ LD ++ + GE L+GP+G GK+T +++L + P SG +L
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
D + + R +G + ++ L+ V + + Y L +++ E AR
Sbjct: 59 FDGKPLD----IAARNRIGYLPEERGLYPKMKVIDQLVY--LAQLKGLKKEE--AR-RRI 109
Query: 307 DEFVRTLPQGYNTHIGPRGSS----LSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
DE++ L + + LS G +Q++ A+ + +LILDE S LD +
Sbjct: 110 DEWLERL------ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 363 ELLVRQAVDRLLGH-HTVLVIAHHLETV-MMAKRVFLLDNGK 402
L++ + L TV++ H +E V + RV LL+ G+
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 2e-17
Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 4/236 (1%)
Query: 172 VIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
VIE P A G + ++ KY + VL L+ + G+ V L+G +G GKSTL
Sbjct: 1202 VIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL 1261
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
LLRL G I +D ++ L + R+ G++ Q + +FSGT +N+ D +
Sbjct: 1262 LSALLRLLST-EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL---DPYEQ 1317
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
E + A + P + + G LS G +Q + +AR++ + +L+L
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELN 407
DE ++ LD + ++R+ + + + TV++ H +E ++ ++ +++ +++ +
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYD 1433
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-17
Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
V + L + I G A+IGP+G GKSTL + L RL P G + +D +Q+ + R
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 264 HVGLVSQ------DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
+GL++Q DIT+ ++ L T+ E E + A Q
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+T LSGGQRQR IA L Q +++++LDE T+ LD
Sbjct: 142 DT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 3e-17
Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 29/225 (12%)
Query: 183 HINGD--VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
H + D + F N+ A VL +NL I GE +A+ G +G GK++L L+L +
Sbjct: 33 HSSDDNNLFFSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVS---QDITLFSGTVAENIGYRDLMTKIDMERV 297
P G I +H G +S Q + GT+ ENI + D R
Sbjct: 89 PSEGKI----------------KHSGRISFSSQFSWIMPGTIKENIIFG---VSYDEYRY 129
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + +E + P+ NT +G G +LSGGQR R+++ARA+Y+++ + +LD
Sbjct: 130 KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189
Query: 358 LDSRSELLV-RQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401
LD +E + V +L+ + T +++ +E + A ++ +L G
Sbjct: 190 LDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 4e-17
Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 19/203 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L +++ + G+ ++G +G GKSTL + LL ++ G + + R
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------R 721
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ V Q + + TV NI + D + D R+ R + + + L G T IG
Sbjct: 722 SIAYVPQQAWIMNATVRGNILFFD---EEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-SELLVRQAV-DRLLGHHTVLV 381
+G +LSGGQ+ R+++ARA+Y N V +LD+ SALD+ E +V + L G VL
Sbjct: 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA 838
Query: 382 IAHHLETVMMAKRVFLLDNGKLE 404
H + V A V L +G++E
Sbjct: 839 -THQVHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 4e-17
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 17/192 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRL 258
VLD +NL I AL+GPSG GKSTL ++ RL + +SG + +D D+ + +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 259 DSLRRHVGLVSQ------DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT 312
LRR V +V Q ++++F EN+ + ++ + E R A E +
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIF-----ENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
+ + P G LSGGQ+QRL IARAL VL+ DE T+ LD + +
Sbjct: 133 WDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191
Query: 373 LLGHHTVLVIAH 384
L T++++ H
Sbjct: 192 LKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQ--NIRLD 259
LD ++L +RAGE V+L G +G GKSTL K+L +Y P G I+ + ++Q NIR D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIR-D 78
Query: 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
+ R + ++ Q++ L +V ENI + +T +++ A A + + L N
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITP--GGIMDYDAMYLRAQKLLAQLKLDIN 136
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT 378
+L GQ+Q + IA+AL + + +LILDE T++L + SE V + R L H
Sbjct: 137 PAT--PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHG 193
Query: 379 V--LVIAHHLETVM 390
+ + I+H L V
Sbjct: 194 IACIYISHKLNEVK 207
|
Length = 506 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 4e-17
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 22/220 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL---YDP---LSGCILVDDHDVQNIR 257
+L + + I ++GPSG GKSTL K+L RL YD + G +L D+ I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 258 LDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANADEFVRT 312
LR+ VG+V Q F ++ +NI Y + K +++++ +E +R
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI--------VEECLRK 136
Query: 313 LPQGYNTH--IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
+ + + S LSGGQ+QRL IARAL VL++DE TS +D + + + +
Sbjct: 137 VGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 371 DRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409
L +++++H+ + V +A V L NG+L E S
Sbjct: 197 TELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 6e-17
Identities = 60/208 (28%), Positives = 116/208 (55%), Gaps = 18/208 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
V++ ++L + +GE V L+GP+G GK+T +++ + +G I++DD D+ + L + R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-ERVEHTARTANADEFVRTLPQGYNTHI 321
R +G + Q+ ++F Y +LM + + + + R A+E + + + H+
Sbjct: 78 RGIGYLPQEASIFRRLSV----YDNLMAVLQIRDDLSAEQREDRANEL---MEEFHIEHL 130
Query: 322 -GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL----LGH 376
G SLSGG+R+R+ IARAL N ++LDE + +D S + +++ ++ L LG
Sbjct: 131 RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG- 189
Query: 377 HTVLVIAHHL-ETVMMAKRVFLLDNGKL 403
VL+ H++ ET+ + +R +++ G L
Sbjct: 190 --VLITDHNVRETLAVCERAYIVSQGHL 215
|
Length = 241 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 6e-17
Identities = 70/223 (31%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VL ++L AG+ +++IG SG GKST + + L P G I+V+ + +R
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 258 -------LDSLRRHVGLVSQDITLFSG-TVAEN-----IGYRDLMTKIDMERVEHTARTA 304
L LR + +V Q L+S TV EN I L + ER
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
DE + Y H LSGGQ+QR++IARAL VL+ DE TSALD
Sbjct: 140 GIDERAQ---GKYPVH-------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 365 LVRQAVDRLLGH-HTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
V + + +L T++V+ H + ++ V L GK+EE
Sbjct: 190 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232
|
Length = 257 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-16
Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 28/235 (11%)
Query: 188 VKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
++F N+S+ Y P + +N G+ A++G +G GKSTL + + L P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 245 CILVDD----HDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVE 298
+ VDD H ++ + +R+ +G+V Q + LF TV I + K++++ V+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGS-SLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ A + G++ + + +SGGQ +++AI L N +++LDE T+
Sbjct: 123 NYA-------HRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 358 LDSRSELLVRQAVDRLLG------HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
LD +S ++ V RLL + T+++++H + V A V ++ G +
Sbjct: 176 LDPQS----KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226
|
Length = 286 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++ I GE V IGP+G GK+T K+L L P SG + V V R R
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLR 94
Query: 264 HVGLV-SQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+G+V Q L + V + + L + + DE L
Sbjct: 95 RIGVVFGQKTQLWWDLPVID--SFYLLA---AIYDLPPARFKKRLDELSELLDLEELLDT 149
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TV 379
R LS GQR R IA AL +L LDE T LD ++ +R + TV
Sbjct: 150 PVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207
Query: 380 LVIAHHLETV-MMAKRVFLLDNGKL 403
L+ +H+++ + +A+RV ++D G+L
Sbjct: 208 LLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 2e-16
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 21/209 (10%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261
L + H+R GE L G SG GKSTL KL+ + P +G I HD+ ++ + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 262 RRHVGLVSQD-ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
RR +G++ QD L TV +N+ ++ + + R + A + V L + N
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--RVSAALDKVGLLDKAKNFP 135
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-SRSELLVR--QAVDRLLGHH 377
I LSGG++QR+ IARA+ +VL+ DE T LD + SE ++R + +R+
Sbjct: 136 I-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GV 188
Query: 378 TVLVIAHHLETVMMAKR---VFLLDNGKL 403
TVL+ H + ++++R + L +G L
Sbjct: 189 TVLMATH--DIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-16
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+ ++ +R G+T+A+IG +G GKSTLAK+L + +P SG IL++DH + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 265 VGLVSQDITLFSGTVAENIGY---RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+ ++ QD S IG L D+E + + V LP N +
Sbjct: 89 IRMIFQDPNT-SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSELL 365
L+ GQ+QR+A+ARAL ++I DEA ++LD RS+L+
Sbjct: 148 ----HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLI 189
|
Length = 267 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV------------DDH 251
VL ++L + AGE V L GPSG GKSTL + L Y P G ILV +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+V +R R +G VSQ + + A ++ L+ + + R AR AD R
Sbjct: 86 EVLEVR----RTTIGYVSQFLRVIPRVSALDVVAEPLLAR-GVPR--EVARAKAADLLTR 138
Query: 312 -TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LP+ + P ++ SGG++QR+ IAR + +L+LDE T++LD+ + R V
Sbjct: 139 LNLPERL-WSLAP--ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN----RAVV 191
Query: 371 DRLLG 375
L+
Sbjct: 192 VELIR 196
|
Length = 235 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 2e-16
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIR- 257
VLDQ+++ A +L+GP+G GK+T + L R+ D +SG +L+ + N R
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENI--GYR--DLMTKIDMERVEHTARTANADEFVRTL 313
+ RR VG++ Q F ++ +N+ G R L+ + + V T L
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVG------L 149
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD----SRSELLVRQA 369
+ LSGGQ+Q L +AR L N VL+LDE TSALD + E +R
Sbjct: 150 WDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 370 VDRLLGHHTVLVIAHHL-ETVMMAKRVFLLDNGKLEE 405
DRL TV+++ H+L + ++ R L +G+L E
Sbjct: 210 ADRL----TVIIVTHNLAQAARISDRAALFFDGRLVE 242
|
Length = 276 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 3e-16
Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 188 VKFCNISFKYADNMPLV---LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+KF +++ Y N P L ++L ++ G ALIG +G GKSTL + L L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 245 CILVDDHDVQNI----RLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVE 298
+ V D V + + +R+ VG+V Q + LF TV +++ + I E+ E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGS-SLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A A E V G + LSGGQ +R+AIA L VL+LDE T+
Sbjct: 122 KIA--AEKLEMV-----GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
Query: 358 LDSRSELLVRQAVDRL-LGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
LD ++ + + Q + + TV+++ H ++ V A V+LL+ G +
Sbjct: 175 LDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222
|
Length = 288 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-16
Identities = 72/223 (32%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 183 HINGDVKFC--NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+ D F N+SF+ +L L+L AG+ LIG +G GKSTL K+L R
Sbjct: 5 TNHSDTTFALRNVSFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI--------GYRDLMTK 291
P G IL+D +++ + R V + Q + G TV E + G
Sbjct: 63 PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA 122
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
D E+VE L SLSGG+RQR IA + Q+S L+L
Sbjct: 123 ADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAWIAMLVAQDSRCLLL 171
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKR 394
DE TSALD ++ V V RL + VIA L + MA R
Sbjct: 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIA-VLHDINMAAR 213
|
Length = 265 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 6e-16
Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 31/214 (14%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
V+ ++L + GE + L+GPSG GKSTL +++ L SG I + V L+ R
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE--LEPADR 76
Query: 264 HVGLVSQDITLFSG-TVAENIGY----RDLMTK--IDMERVEHTARTANADEFVRTLPQG 316
+ +V Q+ L+ +V EN+ Y R M K I+ ERV AR + + P+
Sbjct: 77 DIAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIE-ERVAEAARILELEPLLDRKPR- 133
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS------RSELLVRQAV 370
LSGGQRQR+A+ RA+ + +V + DE S LD+ R E+ Q +
Sbjct: 134 ----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI---QRL 180
Query: 371 DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404
R L ++ V +E + +A RV +++ G E
Sbjct: 181 HRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214
|
Length = 356 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 8e-16
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 32/208 (15%)
Query: 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269
L GE + L+GP+G GK+TL + +L L P G + V RH+G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55
Query: 270 Q----------DI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
Q + T+ SG +IG+ D V R E P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGR-TGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVG- 112
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH- 376
LSGGQRQR+ +ARAL SVL+LDE + LD ++ L+ + L G
Sbjct: 113 ---------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG 163
Query: 377 HTVLVIAHHL-ETVMMAKRVFLLDNGKL 403
+L+ H L + + RV LL NG++
Sbjct: 164 TAILMTTHDLAQAMATCDRVVLL-NGRV 190
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 8e-16
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 45/207 (21%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDS- 260
+L +NL I+ GE AL+GP+G GKSTLAK ++ Y+ G IL D+ ++ +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
R + L Q G A +F+R + +G
Sbjct: 75 ARLGIFLAFQYPPEIPGVKNA---------------------------DFLRYVNEG--- 104
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT- 378
SGG+++R I + L + ILDE S LD + LV + +++L
Sbjct: 105 --------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 379 VLVIAHHLETV--MMAKRVFLLDNGKL 403
VL+I H+ + + RV +L +G++
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRI 183
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-15
Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L+ +NL + +GE + ++GPSG GK+TL L+ G I +D ++
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD-----GKPVEGPGA 70
Query: 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G+V Q+ L V +N+ + + ++ + A + +G
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK----KVGLEGAEKR-- 124
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-----ELLVRQAVDRLLGHH 377
LSGGQRQR+ IARAL N +L+LDE ALD+ + LL++ L
Sbjct: 125 -YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK------LWQE 177
Query: 378 T---VLVIAHHL-ETVMMAKRVFLLDNG 401
T VL+I H + E V MA + LL G
Sbjct: 178 TGKQVLLITHDIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD+++ + G V +GP+G GKST K++ P SG + V DV + ++R
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQR 75
Query: 264 HVGLVSQDITLFSGT-VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
++G + + L+ V E + + + M+ R E V P+ +
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYG--MKGQLLKQRVEEMIELVGLRPEQHK---- 129
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVI 382
+ LS G RQR+ +A+AL + VLILDE T+ LD + +R + + T+++
Sbjct: 130 -KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILS 188
Query: 383 AHHLETV-MMAKRVFLLDNGKL 403
H ++ V + RV +++ GK+
Sbjct: 189 THIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 25/219 (11%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
L ++ +NL +R E V+LIGP+G GK+T+ L Y P G IL+ ++ + +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 263 RHVGLVS--QDITLF-SGTVAENI---GYRDLMTKI--------DMERVEHTA--RTANA 306
R G+V Q + LF TV EN+ ++ L T + R E A R A
Sbjct: 79 RM-GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
E V G H + +L+ GQ++RL IAR + +L+LDE + L+ + +
Sbjct: 138 LERV-----GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 367 RQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGK 402
+ + L H TVL+I H ++ VM ++ R+++++ G
Sbjct: 193 DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
Length = 255 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-15
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 22/216 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S ++ ++ ++L + L+GP+G GKSTL K++ + P SG I+ D H
Sbjct: 5 NLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDMERVEHTARTANADEFV 310
L +G + + L+ A EN+ + + R++ +
Sbjct: 63 PWTRKDL----HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL---- 114
Query: 311 RTLPQGYNTHIGPRGSS-LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
T+ G + + S G +QRL IA AL + +LILDE T+ LD +R+
Sbjct: 115 --------TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELREL 166
Query: 370 VDRLLGHHTVLVIAHHL--ETVMMAKRVFLLDNGKL 403
+ ++++ H+ E +A + ++ G L
Sbjct: 167 IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 23/243 (9%)
Query: 190 FCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
F I + P V LD ++ RAG+ AL+G +G GKSTL K+L Y P +G IL
Sbjct: 7 FDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 248 VDDHDVQ--NIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
+D +++ + +L V ++ Q++ L TVAEN+ L K + R
Sbjct: 63 IDGQEMRFASTT-AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNR----RLL 117
Query: 305 NADEFVRTLPQGYNTHIGPRG--SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR- 361
N R + I P LS GQRQ + IA+AL +N+ V+ DE TS+L +R
Sbjct: 118 NY--EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175
Query: 362 SELLVRQAVDRLLGHHTV-LVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSL 419
E L R + L V L ++H +E + + + + +G+ + + D L
Sbjct: 176 IEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA-TFDDMAQVDRDQL 233
Query: 420 VSA 422
V A
Sbjct: 234 VQA 236
|
Length = 501 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 2e-15
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 23/216 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K N+SF Y + +L+ +++ I + A+IGPSG GKST K L R+ + L +
Sbjct: 8 IKVNNLSFYY--DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVR 64
Query: 248 VD---DHDVQNI-----RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT----KIDME 295
V+ + QNI L+ LRR V +V LF +V +N+ Y + K++++
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ +A AD L I LSGGQ+QRL IARAL VL++DE
Sbjct: 125 DIVESALKD-AD-----LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 356 SALDSRSELLVRQAVD--RLLGHHTVLVIAHHLETV 389
LD + + V + RL T+++++H+L V
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 2e-15
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDSLRRHVGLVSQD 271
GET++L+G SG GKST + LLRL + G I+ + + + +L +LRR + + QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 272 ITLFSGTVAENIGYRDLMTKIDMERVEH----TARTANADEFVRTLPQGYNTHIGPRGSS 327
S + +G +M + + + AR A E V LP+ H
Sbjct: 410 -PYASLDPRQTVGD-SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----HAWRYPHE 463
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
SGGQRQR+ IARAL N V+I DEA SALD
Sbjct: 464 FSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 2e-15
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 28/232 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N+ Y N V+ ++L I AL+GPSG GKSTL + RL + + G +
Sbjct: 9 NLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66
Query: 247 LVDDHDVQNIRLDSL--RRHVGLVSQ------DITLFSGTVAENIGYRDLMT---KIDME 295
+ ++ + +D + RR VG+V Q +T++ VA + L+ ++D E
Sbjct: 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD-NVAIGVKLNGLVKSKKELD-E 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
RVE + A + V+ Y S+LSGGQRQRL IARAL +L++DE T
Sbjct: 125 RVEWALKKAALWDEVKDRLNDY-------PSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 356 SALDSRSELLVRQAVDRLLGHHTVLVIAHH-LETVMMAKRVFLLDNGKLEEL 406
+ +D + + + L +T++++ H + ++ V L GKL E+
Sbjct: 178 ANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229
|
Length = 253 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 3e-15
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 35/235 (14%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL ++ + G+ +A+ G +G GKS+L +++ +P G I +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI----------------K 484
Query: 264 HVGLVS---QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
H G +S Q + GT+ +NI + D R + +E + P+ T
Sbjct: 485 HSGRISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTV 541
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-LVRQAVDRLLGHHTV 379
+G G +LSGGQR R+++ARA+Y+++ + +LD + LD +E + + +L+ + T
Sbjct: 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTR 601
Query: 380 LVIAHHLETVMMAKRVFLLDN------GKLEELN------RSTLLGSNHDSLVSA 422
+++ LE + A ++ LL G EL S LLG SA
Sbjct: 602 ILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSA 656
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-15
Identities = 63/248 (25%), Positives = 122/248 (49%), Gaps = 19/248 (7%)
Query: 185 NGDVKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
+ D+ N+S+ YA P L+ +L + + +IG +G GKST+ +L L
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 242 LSGCILVDDHDV-QNIR----LDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDM 294
+G +V D+ + N++ + LR+ +GLV Q + LF T+ ++I + + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354
+ E + + V LP+ Y + LSGGQ++R+A+A + + + L+LDE
Sbjct: 124 Q--EAYKKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 355 TSALDSRSELLVRQAVDRLLGHHT--VLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411
T LD + E +RL + ++++ H+++ V+ +A V ++ GK+ +
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 412 LGSNHDSL 419
+ SN + L
Sbjct: 238 IFSNQELL 245
|
Length = 289 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-15
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 44/219 (20%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++ I GE V +IG +G GKSTL KL+ +Y P SG + V
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVT-------------- 87
Query: 264 HVGLVSQDITLFSG-----TVAENIGYRDL---MTKIDM-ERVEHTARTANADEFVRTLP 314
G V+ I L +G T ENI R L +T+ ++ E+V+ A +F+
Sbjct: 88 --GKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV 145
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL- 373
+ Y S G RLA + A + +L+LDE + D+ + ++RL
Sbjct: 146 KTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVGDAA---FQEKCLERLN 191
Query: 374 ---LGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408
+ T+++++H L + R L++G++
Sbjct: 192 ELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 4e-15
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 34/208 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S Y + VLD ++L I G ++IGP+G GKSTL ++ RL SG I +D
Sbjct: 6 NVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL 63
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY------RDLMTKIDMERVEHTARTA 304
++ + L + + ++ Q+ + S TV + +G+ + +TK D +
Sbjct: 64 ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYL 123
Query: 305 N----ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
+ +D ++ LSGGQRQR IA L Q++ ++LDE + LD
Sbjct: 124 HLEDLSDRYL---------------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 360 --SRSEL-LVRQAVDRLLGHHTVLVIAH 384
S + ++R+ D L T++V+ H
Sbjct: 169 KHSVQIMKILRRLADEL--GKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN---IRLDSL 261
LD ++ + G+T+A++G SG GKSTLA+LL + P G + D+ L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 262 RRHVGLVSQD--ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN- 318
R+ + +V Q+ +L I L+ + E + V P+ Y+
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR 150
Query: 319 -THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
H+ SGGQRQR+AIARAL + V++ DE SALD
Sbjct: 151 YPHM------FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 24/215 (11%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDH--DVQNIRLDS 260
+D ++L ++ GE ++G SG GK+TL+K++ + +P SG + V D D+ D
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 261 ---LRRHVGLVSQDITLFS-GTVAEN----IGYRDLMTKIDMERVEHTARTANADEFVRT 312
+R++G++ Q+ L+ TV +N IG +L ++ + T + DE
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDE---- 414
Query: 313 LPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV- 370
I + LS G+R R+A+A+ L + ++ILDE T +D +++ V ++
Sbjct: 415 ---EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471
Query: 371 -DRLLGHHTVLVIAHHLETVMM-AKRVFLLDNGKL 403
R T ++++H ++ V+ R L+ +GK+
Sbjct: 472 KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 4e-15
Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDS 260
+L +N I GE V L+GPSG GKSTL ++ +G + +++ + L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
+R +G++ QD LF +V +N+ + T ++ AR A+ +
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPAT------LKGNARRNAANAALERSGLDGAF 128
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV---DRLLGH 376
H P ++LSGGQR R+A+ RAL L+LDE S LD RQ V R G
Sbjct: 129 HQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 377 HTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
TV V H L+ V RV ++ + E+
Sbjct: 187 PTVQV-THDLQDVPAGSRV--IEMAQWEQ 212
|
Length = 213 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 5e-15
Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 89/224 (39%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S Y L+L ++L I G+ + L+G +G GKST LL+L
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKST----LLKL--------- 45
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTV----AENIGYRDLMTKIDMERVEHTART 303
++ ++ G V IGY
Sbjct: 46 --------------------IAGELEPDEGIVTWGSTVKIGY------------------ 67
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
Q LSGG++ RLA+A+ L +N ++L+LDE T+ LD S
Sbjct: 68 ---------FEQ------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES- 105
Query: 364 LLVRQAVDRLLGHH--TVLVIAH---HLETVMMAKRVFLLDNGK 402
+A++ L + TV++++H L+ V A ++ L++GK
Sbjct: 106 ---IEALEEALKEYPGTVILVSHDRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 57/209 (27%), Positives = 81/209 (38%), Gaps = 29/209 (13%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267
++ I GE V +G +G GKST K+L L P SG + V+ D R + LR
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS---- 98
Query: 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART------ANADEFVRTLPQGYNTHI 321
I L G + DL +E ++ D L +
Sbjct: 99 ----IGLVMGQKLQLWW--DLPALDSLEVLKLIYEIPDDEFAERLDFLTEIL--DLEGFL 150
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH---- 377
LS GQR R +A AL VL LDE T LD + + + L +
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD----VNAQANIREFLKEYNEER 206
Query: 378 --TVLVIAHHLETVM-MAKRVFLLDNGKL 403
TVL+ H + + + RV L+D G+L
Sbjct: 207 QATVLLTTHIFDDIATLCDRVLLIDQGQL 235
|
Length = 325 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 7e-15
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+D+LN+ + A +G +G GK+T +L L P SG +LV D++ LD++R+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+G+ Q LF TVAE+I + + E + D G +
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED-------TGLHHKRNE 1057
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH---HTVL 380
LSGG +++L++A A ++ V++LDE TS +D S R D LL + T++
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR---RSIWDLLLKYRSGRTII 1114
Query: 381 VIAHHL-ETVMMAKRVFLLDNGKL 403
+ HH+ E ++ R+ ++ G+L
Sbjct: 1115 MSTHHMDEADLLGDRIAIISQGRL 1138
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-15
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
++ L+ + AGE + L GP+G GK+TL +L+ L P +G I +D D+ + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 263 RHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
++G ++ + TVAEN+ + + +++ A + LP GY
Sbjct: 76 HYLG--HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP--LAHLPFGY---- 127
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLV 381
LS GQ++R+A+AR L N + ILDE T+ALD+ + L + + L +++
Sbjct: 128 ------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181
Query: 382 IAHH 385
A H
Sbjct: 182 AATH 185
|
Length = 207 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 9e-15
Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 43/246 (17%)
Query: 192 NISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-- 246
NI + +P LD +++ I GE +A+IG +G GK+T + L L P +G I
Sbjct: 7 NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66
Query: 247 -LVDDHD-----------------------VQNIRLDSLRRHVGLVSQ--DITLFSGTVA 280
D+ + ++ I+ +RR VG+V Q + LF T+
Sbjct: 67 IFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK--EIRRRVGVVFQFAEYQLFEQTIE 124
Query: 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSGGQRQRLAIA 339
++I + + + E E R A E V L + Y R LSGGQ++R+A+A
Sbjct: 125 KDIIFGPVSMGVSKE--EAKKRAAKYIELV-GLDESYL----QRSPFELSGGQKRRVALA 177
Query: 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRL-LGHHTVLVIAHHLETVM-MAKRVFL 397
L L+ DE T+ LD + + + D L T++++ H L+ V+ KR
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 398 LDNGKL 403
+GK+
Sbjct: 238 FKDGKI 243
|
Length = 305 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-15
Identities = 67/267 (25%), Positives = 112/267 (41%), Gaps = 45/267 (16%)
Query: 168 FKS---KVIEKPDAVSLDHINGDVKFCNISFKYADNMP---LVLDQLNLHIRAGETVALI 221
K ++ P+ +S D I ++ N+ + + + L+ ++ + +I
Sbjct: 2 MDYFMKKKLKVPNPLSDDII---LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFII 58
Query: 222 GPSGGGKSTLAKLLLRLYDPLSGCILVDD---------------HDVQNI-RLDSLRRHV 265
G SG GKSTL L G I V D + I LRR V
Sbjct: 59 GNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118
Query: 266 GLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTA-----RTANADEFVRTLPQGYN 318
+V Q + LF T+ ++I + + + + A + D ++ P G
Sbjct: 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-- 176
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE-LLVRQAVDRLLGHH 377
LSGGQ++R+AIA L +LI DE T+ LD + E +++ +D +
Sbjct: 177 ---------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK 227
Query: 378 TVLVIAHHLETVM-MAKRVFLLDNGKL 403
TV VI H +E V+ +A V ++D GK+
Sbjct: 228 TVFVITHTMEHVLEVADEVIVMDKGKI 254
|
Length = 320 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 1e-14
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 39/241 (16%)
Query: 178 AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237
+ + +++G K ++SF +RAGE + + G G G++ LA+ L
Sbjct: 263 VLEVRNLSGGGKVRDVSF---------------TVRAGEILGIAGLVGAGRTELARALFG 307
Query: 238 LYDPLSGCILVDDHDVQNIR-LDSLRRHVGLVSQD------ITLFSGTVAENIGYRDLMT 290
SG IL+D V+ D+++ + V +D + S +AENI L
Sbjct: 308 ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS--IAENITLASLRR 365
Query: 291 KIDMERVEHTARTANADEFVRTL---PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
++ A A+ ++R L IG +LSGG +Q++ +AR L +
Sbjct: 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPK 421
Query: 348 VLILDEATSALD--SRSEL--LVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402
VLILDE T +D +++E+ L+R+ +L+I+ L ++ ++ R+ ++ G+
Sbjct: 422 VLILDEPTRGIDVGAKAEIYRLIRELAAEGKA---ILMISSELPELLGLSDRILVMREGR 478
Query: 403 L 403
+
Sbjct: 479 I 479
|
Length = 500 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-14
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 22/209 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDS 260
L +++LHI GE V LIG +G GK+TL L SG I+ D D+ Q ++
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI-- 77
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
+R V +V + +FS TV EN+ M ER + R E P+ +
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLA----MGGFFAERDQFQERIKWVYEL---FPRLHER 130
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD-----RLL 374
I R ++SGG++Q LAI RAL +L+LDE + L + ++++Q D R
Sbjct: 131 RI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQ 186
Query: 375 GHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
G LV + + + +A R ++L+NG +
Sbjct: 187 GMTIFLVEQNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDS 260
V+ ++ +R GET+ L+G SG GKST LLRL G I D + N+ +L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME-------RVEHTARTANADE--FVR 311
+R + +V QD L ++++ RV +A E +
Sbjct: 360 VRHRIQVVFQD------------PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA 407
Query: 312 TLPQ-GYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ + G + R + SGGQRQR+AIARAL S++ILDE TS+LD + +
Sbjct: 408 VMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILAL 467
Query: 370 VDRLLGHHTV--LVIAHHLETV-MMAKRVFLLDNGKLEE 405
+ L H + L I+H L V + +V +L G++ E
Sbjct: 468 LKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-14
Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 30/225 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259
VL ++ I GE +A++G SG GKSTL LL L P SG ++ + + + + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
+ +G + Q L T EN+ L+ K + A A G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLA-------AVGLE 136
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS---------ELLVRQA 369
R S LSGG+RQR+AIARAL N +++ DE T LD+R+ EL Q
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196
Query: 370 VDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGS 414
LV+ H L+ R + +G+L +L+G+
Sbjct: 197 T-------AFLVVTHDLQLAKRMSRQLEMRDGRLTA--ELSLMGA 232
|
Length = 233 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRL 258
LV D LNL ++ GE +AL+G SG GKS +L L P SG IL+D + + +
Sbjct: 1 LVQD-LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI 59
Query: 259 DSLRRHVGLVSQD-ITLFSG--TVA----ENIGYRDLMTKIDMERVEHTARTANADEFVR 311
RH+ + Q+ T F+ T+ E + ++K + +
Sbjct: 60 RG--RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEE 117
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
L P LSGG QR+ IA AL LI DE T+ LD ++ V + +
Sbjct: 118 VL------KKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 372 RLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
L +L+I H L V +A V ++D+G++ E
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 25/206 (12%)
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSLR 262
+NL + A A+ G SG GK++L + L P G I+++ + I L +
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
R +G V QD LF V N+ Y M K A D+ V L G +
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYG--MAKSM---------VAQFDKIVALL--GIEPLL 122
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELLVRQAVDRLLGHHT- 378
SLSGG++QR+AI RAL +L++DE ++LD + ELL ++RL
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL--PYLERLAREINI 180
Query: 379 -VLVIAHHL-ETVMMAKRVFLLDNGK 402
+L ++H L E + +A RV +L+ GK
Sbjct: 181 PILYVSHSLDEILRLADRVVVLEQGK 206
|
Length = 352 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 5e-14
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
L+ L+L++ GE +IGP+G GK+T+ ++ P G +L D+ + + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 265 -VGLVSQDITLFSG-TVAEN--IGYRD-------LMTKIDME---RVEHTARTANADEFV 310
+G Q T+F TV EN + L ++ E R+E T +
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA 137
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL-----DSRSELL 365
L LS GQ+Q L I L Q+ +L+LDE + + + +ELL
Sbjct: 138 DRLAG-----------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL 186
Query: 366 VRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403
L G H+V+V+ H +E V +A +V +L G +
Sbjct: 187 K-----SLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 68/252 (26%), Positives = 101/252 (40%), Gaps = 48/252 (19%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDP--- 241
++ +++F + ++ I AGET+AL+G SG GKS A +L L
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT------KIDME 295
SG IL D D+ LR G I + +++ MT I +
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRG---NKIGMI---------FQEPMTSLNPLHTIGKQ 115
Query: 296 RVE----HTA-RTANADEFVRTLPQGYNTHIGPRGSS---------LSGGQRQRLAIARA 341
E H A A L + +G LSGGQRQR+ IA A
Sbjct: 116 LAEVLRLHRGLSRAAARARALELLE----LVGIPEPEKRLDAYPHELSGGQRQRVMIAMA 171
Query: 342 LYQNSSVLILDEATSALDSRSEL----LVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVF 396
L +LI DE T+ALD + L+++ L +L I H L V A RV+
Sbjct: 172 LANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL--GMAILFITHDLGIVRKFADRVY 229
Query: 397 LLDNGKLEELNR 408
++ +G++ E
Sbjct: 230 VMQHGEIVETGT 241
|
Length = 534 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 11/192 (5%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDV--QNIRLDS 260
LD ++L +R GE V L G +G GKSTL K+L +Y G I + NIR D+
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR-DT 75
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
R + ++ Q++TL +VAENI + +T + R+ + A A +R L +
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEIT-LPGGRMAYNAMYLRAKNLLRELQLDADN 134
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
P G GGQ+Q + IA+AL + + +LILDE +S+L + E + + R L H V
Sbjct: 135 VTRPVG-DYGGGQQQLVEIAKALNKQARLLILDEPSSSL-TEKETEILLDIIRDLKAHGV 192
Query: 380 --LVIAHHLETV 389
+ I+H L V
Sbjct: 193 ACVYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 6e-14
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 36/212 (16%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++ + GE + LIG +G GKSTL +LL +Y P SG + V
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR-------------- 82
Query: 264 HVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
G VS + L G T ENI + + + R E + EF L +
Sbjct: 83 --GRVSSLLGLGGGFNPELTGRENIYLNGRL--LGLSRKEIDEKIDEIIEFSE-LGDFID 137
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH- 377
+ + S G + RLA A A +L++DE + D+ + RL
Sbjct: 138 LPV----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA---FQEKCQRRLRELLK 190
Query: 378 ---TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
TV++++H ++ + R +L+ GK+
Sbjct: 191 QGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 9e-14
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 31/217 (14%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDS- 260
+L +NL ++ GE A++GP+G GKSTLA ++ Y+ G IL D D+ + D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 261 LRRHVGLVSQDITLFSG-------TVAENI--GYRDLMTKIDMERVEHTARTANADEFV- 310
R + L Q G A N G R + ++ ++ A DE
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFL 137
Query: 311 -RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
R + +G SGG+++R I + L + ILDE S LD + +V +
Sbjct: 138 ERYVNEG-----------FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 370 VDRLLGHHT-VLVIAHH---LETVMMAKRVFLLDNGK 402
++ L VL+I H+ L+ + +V +L +G+
Sbjct: 187 INALREEGRGVLIITHYQRLLDYI-KPDKVHVLYDGR 222
|
Length = 251 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 55/177 (31%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Query: 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDSLRRHVGL 267
+ GE +A++G SG GK+TL L SG +L++ + +R
Sbjct: 47 VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAY 103
Query: 268 VSQDITLFSG--TVAENIGY-------RDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
V QD LF TV E++ + R + K ERV+ + L + N
Sbjct: 104 VQQD-DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCAN 155
Query: 319 THIGPRGS--SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
T IG G LSGG+R+RLA A L + +L DE TS LDS V Q + L
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-13
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV----QNIRLDSLRRHVGL 267
I E + ++GP+G GK+T K+L + P G I ++ V Q I+ D
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKAD-------- 73
Query: 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHT---ARTANADEFVRTLPQGYNTHIGPR 324
+ GTV RDL++ I + H A + + L +
Sbjct: 74 -------YEGTV------RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPE----- 115
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVLVI 382
LSGG+ QR+AIA L +++ + +LDE ++ LD L+ + + R ++ T V+
Sbjct: 116 ---LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172
Query: 383 AHH-LETVMMAKRVFLLD 399
H + +A R+ + +
Sbjct: 173 EHDIIMIDYLADRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 3e-13
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGC-ILVDDHDVQ------- 254
L ++L+I GE VAL+GPSG GKSTL + L L D +G I + VQ
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 255 NIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL 313
+IR R + G + Q L + +V EN+ L + ++ L
Sbjct: 80 DIR--KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 314 PQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+ H R S+LSGGQ+QR+AIARAL Q + V++ DE ++LD S +V
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
|
Length = 262 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-13
Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 22/210 (10%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL 261
L +NL + GE AL+G +G GKSTL K+L +++P G I +++ + +LD +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYN--KLDHKLAA 78
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTK-------IDMERVEHTARTANADEFVRTL 313
+ +G++ Q++++ TV EN+ +TK ID + A + L
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA-------MMLL 131
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
G + + ++LS +Q L IA+ L ++ V+I+DE TS+L ++ + +++L
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191
Query: 374 LGHHTVLV-IAHHL-ETVMMAKRVFLLDNG 401
T +V I+H L E + R ++ +G
Sbjct: 192 RKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 9e-13
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 56/214 (26%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDS 260
+ ++ +RAGE V + G G G++ LA+ L L P SG I +D V D+
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72
Query: 261 LRRHVGLVSQD------ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314
+R + V +D + S VAENI L
Sbjct: 73 IRAGIAYVPEDRKREGLVLDLS--VAENIALSSL-------------------------- 104
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL--LVRQAV 370
LSGG +Q++ +AR L ++ VLILDE T +D +++E+ L+R+
Sbjct: 105 -------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA 151
Query: 371 DRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
D VL+I+ L+ ++ + R+ ++ G++
Sbjct: 152 DAGKA---VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 42/175 (24%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---------QNIRL---- 258
+R G+T+A+IG +G GKSTLAK+L + +P SG +L+DDH + Q IR+
Sbjct: 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQD 95
Query: 259 --DSL--RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314
SL R+ + + D L T DL + +++ T R V LP
Sbjct: 96 PSTSLNPRQRISQI-LDFPLRLNT--------DLEPEQREKQIIETLRQ------VGLLP 140
Query: 315 Q--GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSELL 365
Y H+ L+ GQ+QRL +ARAL V+I DEA ++LD RS+L+
Sbjct: 141 DHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189
|
Length = 267 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 38/196 (19%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL ++L ++ G+ + L+GP+G GKSTL +++L L P G I R LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------KRNGKLR- 68
Query: 264 HVGLVSQDITLFSG---TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQG 316
+G V Q + L + TV + R K D ++RV A + Q
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV-------QAGHLIDAPMQ- 119
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG- 375
LSGG+ QR+ +ARAL +L+LDE T +D ++ + +D+L
Sbjct: 120 ----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169
Query: 376 -HHTVLVIAHHLETVM 390
VL+++H L VM
Sbjct: 170 LDCAVLMVSHDLHLVM 185
|
Length = 251 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 21/212 (9%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH-DVQNIRLDSLRR 263
L+ L+ + GE LIGP+G GK+TL ++ P G +L D D+ + + R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 264 H-VGLVSQDITLFSG-TVAENIGYRDLMTKIDME---------RVEHTARTANADEFVRT 312
+G Q T+F TV EN+ +L D R E R +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENL---ELALNRDKSVFASLFARLRAEERRRIDELLATIGL 137
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
+ + LS GQ+Q L I L Q+ +L+LDE + + + +
Sbjct: 138 GDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 373 LLGHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403
L G H++LV+ H + V +A +V +L G +
Sbjct: 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSV 224
|
Length = 249 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-12
Identities = 69/221 (31%), Positives = 96/221 (43%), Gaps = 49/221 (22%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTL----AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L+ +RAGE + L+GP+G GKSTL A LL P SG I ++ L R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 264 HVGLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ-----GY 317
H +SQ T F+ V + Y L H + L + G
Sbjct: 70 HRAYLSQQQTPPFAMPVFQ---YLTL----------HQPDKTRTEAVASALNEVAEALGL 116
Query: 318 NTHIGPRGSSLSGG--QRQRLA-----IARALYQNSSVLILDEATSALDSRSELLVRQ-- 368
+ +G + LSGG QR RLA + + +L+LDE ++LD V Q
Sbjct: 117 DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD------VAQQA 170
Query: 369 AVDRLLGHH-----TVLVIAHHL-ETVMMAKRVFLLDNGKL 403
A+DRLL V++ +H L T+ A RV+LL GKL
Sbjct: 171 ALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKL 211
|
Length = 248 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL ++ + AGE AL+G +G GKSTL K++ + P SG + + + RL +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC--ARLTPAKA 83
Query: 264 H---VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
H + LV Q+ LF +V ENI + + + + ++ L
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENILFG-------------LPKRQASMQKMKQLLAALGC 130
Query: 320 HIGP--RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-SRSELLVRQAVDRLLGH 376
+ SL RQ + I R L ++S +LILDE T++L + +E L + + L
Sbjct: 131 QLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190
Query: 377 HTVLVIAHHL-ETVMMAKRVFLLDNG------KLEELNRSTLL 412
++ I+H L E +A R+ ++ +G K +L+ ++
Sbjct: 191 VGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDII 233
|
Length = 510 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-12
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+ L+ + AGE + + GP+G GK+TL ++L L P +G + +QN+R +S +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQ 75
Query: 264 HVGLVSQDITLFSG-TVAENIG-YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+ + + + T EN+ ++ + + LP G
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVGQ---- 130
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
LS GQ++R+A+AR + + ILDE +ALD ++ V L
Sbjct: 131 ------LSAGQQRRVALARLWLSPAPLWILDEPFTALD-------KEGVALLTAL 172
|
Length = 209 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-12
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 47/197 (23%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+ + L+ + AGE + + GP+G GK+TL ++L L P SG + + + R + R
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 264 -----HVGLVSQDITLFSGTVAENI-------GYRDLMTKIDMERVEHTARTANADEFVR 311
H+ + ++ + EN+ G + + V T
Sbjct: 75 ILYLGHLPGLKPEL-----SALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-------- 121
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
LP LS GQ++RLA+AR + + ILDE T+ALD + V
Sbjct: 122 DLPAAQ----------LSAGQQRRLALARLWLSRAPLWILDEPTTALD-------KAGVA 164
Query: 372 RLLGHHTVLVIAHHLET 388
L G + HL
Sbjct: 165 LLAGL-----LRAHLAR 176
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
L L+ +RAGE + L+GP+G GKSTL + + SG I ++ L RH
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 265 VGLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+SQ T F+ V Y L RT ++ L + +G
Sbjct: 74 RAYLSQQQTPPFAMPVWH---YLTL-------HQPDKTRTELLNDVAGAL--ALDDKLGR 121
Query: 324 RGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
+ LSGG+ QR+ +A + Q +L+LDE ++LD + + + + L
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181
Query: 377 HTVLVIAHH--LETVMMAKRVFLLDNGKL 403
+V++ H T+ A R +LL GKL
Sbjct: 182 GLAIVMSSHDLNHTLRHAHRAWLLKRGKL 210
|
Length = 248 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 27/211 (12%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSLRR- 263
+L I GE L+G SG GKSTL + + L G +LV D DV N +LRR
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 264 ---HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
V +V Q L TV EN+ + M M + E R E V L Q +
Sbjct: 104 RTHRVSMVFQQFALLPWRTVEENVAFGLEMQ--GMPKAERRKRVDEQLELV-GLAQWADR 160
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV-DRLLG--- 375
G LSGG +QR+ +ARA + +L++DE SALD L+R + D LL
Sbjct: 161 KPG----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDP----LIRTQLQDELLELQS 212
Query: 376 --HHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
T++ ++H L+ + + R+ +++ G++
Sbjct: 213 KLKKTIVFVSHDLDEALKIGNRIAIMEGGRI 243
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 15/197 (7%)
Query: 215 GETVALIGPSGGGKSTLAKLLL-RLY-DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272
GE +A++GPSG GKSTL L R+ + +G IL ++ + L+R G V+QD
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTKQILKR-TGFVTQDD 149
Query: 273 TLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP---RGSSL 328
L+ TV E + + L+ + A + L + NT IG RG +
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRG--I 207
Query: 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388
SGG+R+R++IA + N S+LILDE TS LD+ + + + L +V + H +
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267
Query: 389 ---VMMAKRVFLLDNGK 402
M V +L G+
Sbjct: 268 SRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 28/216 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---S 260
+L + L ++ GET+ALIG SG GKSTL +L L D SG + + + + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 261 LR-RHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
LR +HVG V Q L A EN+ L+ +R A + L G
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRG----ESSRQSRN-GAKALLEQLGLGKR 139
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL----- 373
P + LSGG++QR+A+ARA VL DE T LD RQ D++
Sbjct: 140 LDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD-------RQTGDKIADLLF 190
Query: 374 -LGHH---TVLVIAHHLETVMMAKRVFLLDNGKLEE 405
L T++++ H L+ R L NG+L+E
Sbjct: 191 SLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 47/238 (19%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261
+ ++ +RAGE V + G +G G+S L + + L P SG IL++ DV RL
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG-RLSPRERR 332
Query: 262 ----------RRHVGLVSQDITLFSGTVAENIGYRDLMTK-------IDMERVEHTARTA 304
R GLV ++AEN+ K +D + AR
Sbjct: 333 RLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL 386
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+ VR SLSGG +Q+L +AR L + +LI + T LD +
Sbjct: 387 IEEFDVRA------PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIE 440
Query: 365 LVRQAV----DRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL------EELNRSTL 411
+ + + D VL+I+ L+ ++ ++ R+ ++ G++ EE R +
Sbjct: 441 FIHERLLELRDAGKA---VLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEI 495
|
Length = 501 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLR 262
+L+ ++ ++ G AL+G SG GK+TL +L +G I D V LD S +
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--TGVITGGDRLVNGRPLDSSFQ 835
Query: 263 RHVGLVSQ-DITLFSGTVAENIGY-------RDLMTKIDMERVEHTARTANADEFVRTLP 314
R +G V Q D+ L + TV E++ + + + ME VE + + + +
Sbjct: 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV- 894
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI-LDEATSALDSRSELLVRQAVDRL 373
+G G L+ QR+RL I L +L+ LDE TS LDS++ + + + +L
Sbjct: 895 ------VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948
Query: 374 LGH-HTVLVIAHHLETVMMAK--RVFLLDNG 401
H +L H ++ + R+ LL G
Sbjct: 949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 7e-11
Identities = 43/183 (23%), Positives = 63/183 (34%), Gaps = 61/183 (33%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
GE + ++GP G GK+TLA+ L R P G ++
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------------------------- 35
Query: 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334
ID E + Q +G + +S SG R
Sbjct: 36 -----------------IDGEDILEEVLD-----------QLLLIIVGGKKASGSGELRL 67
Query: 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH-------TVLVIAHHLE 387
RLA+A A VLILDE TS LD+ E L+ + L TV++ + +
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 388 TVM 390
+
Sbjct: 128 DLG 130
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-11
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+ L+ + AGE + + GP+G GK+TL ++L L PL+G +L++ + R R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 264 HVGLVSQDITLFSGTVAENIG-YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+ L + +V EN+ + E+VE + F P
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADH---SDEQVEEALARVGLNGF-EDRPVAQ----- 125
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVI 382
LS GQ++R+A+AR L + ILDE T+ALD +A+ ++V+
Sbjct: 126 -----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVL 180
Query: 383 AHHL 386
H
Sbjct: 181 TTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 43/251 (17%)
Query: 144 GVGKAYNEFKQGEPAIERLFDLTKFKSKVI--EKPDAVSLDHINGDVKFCNISFKYADNM 201
V NE+ +G E + +F+ + I E+ + V++ ++ Y D
Sbjct: 301 SVRVGINEYLKGYLPEENV----RFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTYGD-- 354
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL 261
L+ I GE + ++GP+G GK+T KLL +G I D+ ++++
Sbjct: 355 -FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLK---- 402
Query: 262 RRHVGLVSQDI-TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNT 319
V Q I + GTV DL+ + +T + + N
Sbjct: 403 ---VSYKPQYISPDYDGTV------EDLLRSAIRSAFG--------SSYFKTEIVKPLNL 445
Query: 320 H--IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
+ LSGG+ QR+AIA AL + + + +LDE ++ LD ++V + + R + ++
Sbjct: 446 EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENN 505
Query: 378 --TVLVIAHHL 386
T LV+ H +
Sbjct: 506 EKTALVVDHDI 516
|
Length = 591 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 10/168 (5%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRR 263
L L++ G +AL+G +G GKST+ K+L +Y +G IL +V N S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 264 HVGLVSQDITLFSG-TVAENI--GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
+G++ Q++ L T+AENI G R+ + + R++ A AD+ + L +++
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLG-REFVNR--FGRIDWKKMYAEADKLLARLNLRFSSD 136
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL-DSRSELLVR 367
LS G++Q + IA+ L S V+I+DE T AL D+ +E L R
Sbjct: 137 K--LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
|
Length = 501 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 37/222 (16%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSL 261
+L +NL ++ GE A++GP+G GKSTL+K + Y+ SG IL D+ + D
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE- 73
Query: 262 RRHVGL------------VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA--- 306
R GL VS F + +D+ + A
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLE--FLRSALNARRSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 307 --DEFV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+EF+ R++ +G+ SGG+++R I + + ILDE S LD +
Sbjct: 132 MDEEFLNRSVNEGF-----------SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL 180
Query: 364 LLVRQAVDRLLGHHT-VLVIAHHLETVMMAK--RVFLLDNGK 402
+V + ++RL L+I H+ + K V +L +G+
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR 222
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 52/222 (23%)
Query: 190 FCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ N+++ +L+ ++ +++ G AL+G SG GK+TL +L
Sbjct: 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVL------------ 53
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTAR 302
+ R+ G+++ +I + +G + GY + + D+ T R
Sbjct: 54 ------------AGRKTAGVITGEILI-NGRPLDKNFQRSTGY---VEQQDVHSPNLTVR 97
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
A F L RG LS QR+RL I L S+L LDE TS LDS++
Sbjct: 98 --EALRFSALL----------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143
Query: 363 ELLVRQAVDRLLGH-HTVLVIAHHLETVMMAK--RVFLLDNG 401
+ + + +L +L H + K R+ LL G
Sbjct: 144 AYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 57/197 (28%), Positives = 80/197 (40%), Gaps = 42/197 (21%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD 271
R G+ V ++GP+G GKST K+L +G + N L R+ S D
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKIL-------AGEL------KPN-----LGRYEDPPSWD 138
Query: 272 --ITLFSGT---------------VAENIGYRDLMTKIDMERV----EHTARTANADEFV 310
I F GT Y DL+ K+ +V + DE V
Sbjct: 139 EVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVV 198
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
L G + S LSGG+ QR+AIA AL +++ V DE +S LD R L + +
Sbjct: 199 ERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 371 DRLL-GHHTVLVIAHHL 386
L V+V+ H L
Sbjct: 257 RELAEDGKYVIVVEHDL 273
|
Length = 591 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 5e-10
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 32/194 (16%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--------LYDPLSGCILVDDHDVQN 255
VL LNL I+ G+ VA++G SG GK+TL +++L Y P SG + V + V
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 256 IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
+ + T+ E++ + + A ++A + R
Sbjct: 458 LIPGEY---------EPEFGEVTILEHL-RSKTGDLNAAVEILNRAGLSDAVLYRRKF-- 505
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
S LS GQ++R +A+ L + +VL++DE + LD + + V + + L
Sbjct: 506 ----------SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 376 HH--TVLVIAHHLE 387
T++V+ H E
Sbjct: 556 EAGITLIVVTHRPE 569
|
Length = 593 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 41/219 (18%)
Query: 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL-----------LRLY 239
N Y D +L L+ + GE ++GP+G GKSTL L+ L L+
Sbjct: 264 NNGVVSYNDRP--ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLF 321
Query: 240 DPL--SGCILVDDHDVQNIRLDSLRRHVGLVSQDITL---FSGTVAENI--GYRDLMTKI 292
SG + D +++H+G VS + L S +V I G+ D I
Sbjct: 322 GRRRGSGETIWD-----------IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFD---SI 367
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLA-IARALYQNSSVLI 350
+ + + A +++ L G + SLS GQ QRLA I RAL ++ ++LI
Sbjct: 368 GIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLI 424
Query: 351 LDEATSALDSRSELLVRQAVDRLLGH-HT-VLVIAHHLE 387
LDE LD + LVR+ VD L+ T +L ++HH E
Sbjct: 425 LDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE 463
|
Length = 490 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-10
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 43/182 (23%)
Query: 192 NISF---KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL---LRLYDPLSGC 245
NISF K +P+ L + ++ GE V ++G G G STL K L + G
Sbjct: 8 NISFTTGKGRSKIPI-LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD 66
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT---AR 302
I + + + + VS++ F +T V T A
Sbjct: 67 IHYNGIPYKEFA-EKYPGEIIYVSEEDVHFP-----------TLT------VRETLDFAL 108
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+EFVR +SGG+R+R++IA AL +SVL D +T LDS +
Sbjct: 109 RCKGNEFVR---------------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
Query: 363 EL 364
L
Sbjct: 154 AL 155
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 28/230 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRR 263
LD +NL +R AL+G +G GKSTL K L +Y SG IL ++ ++L
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 264 HVGLVSQDITLF-SGTVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNT 319
+ +V Q++ L +V +N+ TK +D +++ + A DE +
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK-AIFDEL--------DI 124
Query: 320 HIGPR--GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-----LVRQAVDR 372
I PR ++LS Q Q + IA+A N+ ++I+DE TS+L + E+ ++R+ +R
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKEVNHLFTIIRKLKER 183
Query: 373 LLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHDSLVS 421
G ++ I+H +E + + + +L +G+ + L G D +++
Sbjct: 184 GCG---IVYISHKMEEIFQLCDEITILRDGQW--IATQPLAGLTMDKIIA 228
|
Length = 491 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 8e-10
Identities = 70/238 (29%), Positives = 107/238 (44%), Gaps = 23/238 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI- 246
V+ NI+F + L+ ++ GET+A++G SG GKS A L+RL + G +
Sbjct: 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ 74
Query: 247 ----LVDDHDVQNIRL----DSLRRHV-----GLVSQD-ITLFSG--TVAENIGYRDLMT 290
L+ Q I L + RHV ++ Q+ +T + TV E I +
Sbjct: 75 CDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIA-ESIRL 133
Query: 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350
R E + VR +P+ T + LSGG RQR+ IA AL +VLI
Sbjct: 134 HQGASREEAMVEAKRMLDQVR-IPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 191
Query: 351 LDEATSALDSRSELLVRQAVDRLLGHHT--VLVIAHHLETVM-MAKRVFLLDNGKLEE 405
DE T+ALD + + Q + L + V+ I H + V +A RV ++ G+ E
Sbjct: 192 ADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249
|
Length = 623 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDSLR 262
D + L + GET+ ++G SG GKST A+ ++ L G + D+ ++ ++R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 263 RHVGLVSQDITLFS----GTVAENIG-----YRDLMTKID-MERVEHTARTANADEFVRT 312
+ ++ QD L S T+ E I Y +++ + +RV+ V
Sbjct: 98 SDIQMIFQD-PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK------VGL 150
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV---RQA 369
LP N + P SGGQ QR+ IARAL ++I DE SALD + V Q
Sbjct: 151 LPNLINRY--PH--EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ 206
Query: 370 VDRLLGHHTVLVIAHHLETV 389
+ R +G +++ IAH L V
Sbjct: 207 LQREMG-LSLIFIAHDLAVV 225
|
Length = 331 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 55/203 (27%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG------CILVDDHDVQNIRLDSLRRHV 265
+ G+ ++GP+G GK+T K+L SG ++ + L+R
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKIL-------SGELIPNLGDYEEEPSWDEV----LKRFR 144
Query: 266 G---------LVSQDIT-------------LFSGTVAENIGYRDLMTKIDMERVEHTART 303
G L + +I +F G V R+L+ K+D ER
Sbjct: 145 GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV------RELLKKVD-ER------- 190
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
DE V L G + S LSGG+ QR+AIA AL +++ DE TS LD R
Sbjct: 191 GKLDEVVERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
Query: 364 LLVRQAVDRLLGHHTVLVIAHHL 386
L V + + L VLV+ H L
Sbjct: 249 LNVARLIRELAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V +SF + + D ++L + G+ A++GPSG GK+TL +L+ P G IL
Sbjct: 8 VDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 248 VDDHDVQNI---RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTART 303
D ++ + RL ++R+ + ++ Q LF+ V +N+ Y EHT
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY---------PLREHTQLP 116
Query: 304 ANADEFVRTLPQGYNTHIGPRG------SSLSGGQRQRLAIARALYQNSSVLILDE 353
A + + +G RG S LSGG +R A+ARA+ +++ DE
Sbjct: 117 A---PLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169
|
Length = 269 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-09
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
++ L+ + AGE V + GP+G GK++L ++L L P +G +L ++ R D
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYH 73
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT-ARTANADEFVRTLPQGYNTHI 321
+ + L+ G G + +T ++ R + + L Q +
Sbjct: 74 QDL--------LYLGHQP---GIKTELTALENLRFYQRLHGPGDDEALWEALAQ-----V 117
Query: 322 GPRG------SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
G G LS GQ++R+A+AR + + ILDE +A+D +Q V RL
Sbjct: 118 GLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID-------KQGVARLEA 170
Query: 376 HHTVLVIAHHLE 387
+A H E
Sbjct: 171 L-----LAQHAE 177
|
Length = 204 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 3e-09
Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ F+Y D VL LNL L+G +G GKSTL L L P G +L
Sbjct: 6 DLWFRYQDEP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 252 --DVQNIRLDSLRRHVGLVSQDI--TLFSGTVAENIGY--RDLMTKID--MERVEHTART 303
D L +LR+ V V QD +F + +I + R+L RV+
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTL 123
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+A F Q LS GQ++R+AIA AL + L+LDE T+ LD
Sbjct: 124 VDAQHFRHQPIQ-----------CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 364 LLVRQAVDRLLGHHTVLVIAHH 385
+ + R++ ++I+ H
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSH 194
|
Length = 271 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 38/217 (17%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267
++L +RAGE + L G G G++ LA+ L L G I+++ ++ N + R GL
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEI-NALSTAQRLARGL 340
Query: 268 V-----SQDITLF---------SGTVAENIGYRDLMTKIDMERVE--HTA---RTANADE 308
V Q L+ G+ + + +E A + +A++
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW-IKPARENAVLERYRRALNIKFNHAEQ 399
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
RTL SGG +Q++ IA+ L + +LI+DE T +D + + Q
Sbjct: 400 AARTL---------------SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444
Query: 369 AVDRLLGHHT-VLVIAHHL-ETVMMAKRVFLLDNGKL 403
+ + + VL I+ L E MA RV ++ G++
Sbjct: 445 LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-09
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVL 380
P+ LSGG+ QR+AIA AL +N++ + DE ++ LD L +A+ RL G T L
Sbjct: 67 PQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTAL 126
Query: 381 VIAHHL 386
V+ H L
Sbjct: 127 VVEHDL 132
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 199 DNMPLV-------LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+N+PLV ++ L+ + +G + + GP+G GKS+L ++L L+ P+ G L
Sbjct: 455 ENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPA 513
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+ R ++ L GT+ + I Y D + DM+R R + + +
Sbjct: 514 K-GKLFYVPQRPYMTL---------GTLRDQIIYPD--SSEDMKR-----RGLSDKDLEQ 556
Query: 312 TLPQGYNTHIGPRGSS----------LSGGQRQRLAIARALYQNSSVLILDEATSAL 358
L THI R LSGG++QR+A+AR Y ILDE TSA+
Sbjct: 557 ILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 8e-09
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+ F Y D +L Q++ H+ AG + L G +G GK+TL KL+ L +P G IL +
Sbjct: 6 ELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER- 62
Query: 252 DVQNIRLD--SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA-NAD 307
Q+I+ D + ++ + V + T+ EN D+ H + A
Sbjct: 63 --QSIKKDLCTYQKQLCFVGHRSGINPYLTLRENC-LYDI----------HFSPGAVGIT 109
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
E R + I LS GQ++++A+ R + + +LDE ALD S L +
Sbjct: 110 ELCRLFSLEH--LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166
|
Length = 200 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 38/229 (16%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++ + D +D ++ + GE L+GP+G GK+T +++L L +P G I
Sbjct: 3 LEIEGVTKSFGDKK--AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEHTAR 302
+ + S + IGY R L K+ + +++++ A
Sbjct: 61 WNGGPL----------------------SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAE 98
Query: 303 TANAD--EFVRTLPQ-----GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
E + L + LS G +Q++ A+ +LILDE
Sbjct: 99 LKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158
Query: 356 SALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETV-MMAKRVFLLDNGK 402
S LD + L++ A+ L T++ +H +E V + R+ +L G+
Sbjct: 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQ 207
|
Length = 300 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 81/259 (31%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSGCIL-------------- 247
VL ++ I GE + ++G SG GKS L +L + Y+P SG I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 248 --------------VDDHDVQNIRLD-----SLRRHVGLVSQDITLFSG--TVAEN---- 282
++ +V L +R+ + ++ Q G TV +N
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 283 ---IGYR---------DLMTKIDME-RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329
IGY DL+ + + R+ H AR LS
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR------------------------DLS 170
Query: 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV-LVIAHHLET 388
GG++QR+ +AR L + + + DE T LD ++ LV A++ + + +V+ H
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
Query: 389 VM--MAKRVFLLDNGKLEE 405
V+ ++ + L+NG+++E
Sbjct: 231 VIEDLSDKAIWLENGEIKE 249
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LS 243
DVK ++F D ++ LN +RAGET+ ++G SG GKS A L+ L +
Sbjct: 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIG 73
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---------M 294
G + ++ N+ L + L ++ I++ ++D MT ++ M
Sbjct: 74 GSATFNGREILNLPEKELNK---LRAEQISMI---------FQDPMTSLNPYMRVGEQLM 121
Query: 295 ERVEHTARTANADEF---VRTL-----PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346
E + + A+ F VR L P+ + SGG RQR+ IA AL
Sbjct: 122 EVLMLHKGMSKAEAFEESVRMLDAVKMPEA-RKRMKMYPHEFSGGMRQRVMIAMALLCRP 180
Query: 347 SVLILDEATSALD 359
+LI DE T+ALD
Sbjct: 181 KLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 37/205 (18%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S + D L++D L+ + G V +IGP+G GKSTL +++ P SG I
Sbjct: 323 IEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI-GYRDLMTKIDMERVEHTARTANA 306
+ + V+ +D R + + TV E I G D+ I + + E +R
Sbjct: 381 IGE-TVKLAYVDQSRDALDP--------NKTVWEEISGGLDI---IQLGKREVPSR---- 424
Query: 307 DEFVRTLPQGYNTHIGPRGS-------SLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
Y +GS LSGG+R R+ +A+ L +VL+LDE T+ LD
Sbjct: 425 ---------AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
Query: 360 SRSELLVRQAVDRLLGHHTVLVIAH 384
+ + +A+ G +VI+H
Sbjct: 476 VETLRALEEALLEFAG--CAVVISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 197 YADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN- 255
++ N V L+ H+ AGE + + G +G GK+TL ++L L SG I +D
Sbjct: 19 FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG 78
Query: 256 --IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA-----RTANADE 308
R + H+ + D++ EN+ + + +++ +A D
Sbjct: 79 DRSRFMAYLGHLPGLKADLSTL-----ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDT 133
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
VR LS GQ++RLA+AR + + +LDE + LD
Sbjct: 134 LVR---------------QLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 30/218 (13%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RR 263
++ + GE + ++G SG GKSTL L P G + L L RR
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 264 HV-----GLVSQ---DITLFSGTVAENIGYRDLMTKIDMERVEHTART-ANADEFVRT-- 312
+ G V Q D + NIG R + H A A +++
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-----ARHYGNIRATAQDWLEEVE 136
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD----SRSELLVRQ 368
+ I + SGG +QRL IAR L ++ +DE T LD +R L+R
Sbjct: 137 IDPT---RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 369 AVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
V L V+++ H L ++A+R+ ++ G++ E
Sbjct: 194 LVRDL--GLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 66/228 (28%), Positives = 95/228 (41%), Gaps = 52/228 (22%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264
+ + GE + ++G SG GK+TL L P +G + D Q L +L RR
Sbjct: 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85
Query: 265 V-----GLVSQDIT--LFSGTVA-ENIGYRDLM------------TKID-MERVE-HTAR 302
+ G V Q L A NIG R LM T D +ERVE AR
Sbjct: 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGER-LMAVGARHYGDIRATAGDWLERVEIDAAR 144
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--- 359
D+ T SGG +QRL IAR L + ++ +DE T LD
Sbjct: 145 I---DDLPTTF---------------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 360 -SRSELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
+R L+R V L V+++ H L ++A R+ ++ G++ E
Sbjct: 187 QARLLDLLRGLVREL--GLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
Length = 258 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 50/187 (26%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV------QNIRLDSLRRHV 265
I GE + ++GP+G GK+T AKLL + P G + D ++ Q I+ D
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV---DPELKISYKPQYIKPD------ 412
Query: 266 GLVSQDIT--LFSGTVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
D T ++ +++G +++ + +ER+ D+ V+ L
Sbjct: 413 ----YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL--------LDKNVKDL------ 454
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH-- 377
SGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ R+
Sbjct: 455 ---------SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA 505
Query: 378 TVLVIAH 384
T LV+ H
Sbjct: 506 TALVVDH 512
|
Length = 590 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 26/218 (11%)
Query: 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261
++ + GE + ++G SG GK+TL K + P +G + D Q L ++
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 262 RRHV-----GLVSQ---DITLFSGTVAENIGYRDLMTKIDMERVEHTART-ANADEFVRT 312
RR + G V Q D + NIG R + H A A +++
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-----ARHYGNIRAEAQDWLEE 137
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD----SRSELLVRQ 368
+ I + SGG +QRL IAR L ++ +DE T LD +R L+R
Sbjct: 138 VEID-LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196
Query: 369 AVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
V L V+++ H L ++A R+ ++ G++ E
Sbjct: 197 LVREL--GLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 213 RAGETVALIGPSGGGKSTLAKLLL--------RLYDPLSGCILVDDH---DVQN----IR 257
R G+ + L+GP+G GKST K+L + DP ++D+ ++QN +
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
++ V + Q + L V +G +L+ K D DE V L
Sbjct: 84 EGDVK--VIVKPQYVDLIPKAVKGKVG--ELLKKKD--------ERGKLDELVDQLEL-- 129
Query: 318 NTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
H+ R LSGG+ QR+AIA AL +++ DE +S LD + L + + L
Sbjct: 130 -RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188
Query: 377 -HTVLVIAHHL 386
+ VLV+ H L
Sbjct: 189 DNYVLVVEHDL 199
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 64/242 (26%)
Query: 171 KVIEKPDAVSLDHINGDVKFCNISFKYADNMP----------------LVLDQLNLHIRA 214
K++E+ + ++ H++ F SF+ +++P ++LD + L++
Sbjct: 281 KMLERMELIAPAHVDNPFHF---SFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVP 337
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
G + L+G +G GKSTL KLL P+SG I + + I+L G +Q
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL----AKGIKL-------GYFAQHQLE 386
Query: 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG--------- 325
F + D ++H AR A + L Q ++G G
Sbjct: 387 F--------------LRADESPLQHLARLAP-----QELEQKLRDYLGGFGFQGDKVTEE 427
Query: 326 -SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIA 383
SGG++ RL +A ++Q ++L+LDE T+ LD L +RQA+ + L+ LV+
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD----LDMRQALTEALIDFEGALVVV 483
Query: 384 HH 385
H
Sbjct: 484 SH 485
|
Length = 638 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 13/210 (6%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIR--LDSL 261
+D ++ +R GE + + G G G++ L + L Y G + ++ V +IR ++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV-DIRNPAQAI 334
Query: 262 RRHVGLVSQD-----ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQG 316
R + +V +D I G V +NI L + R++ A ++ L
Sbjct: 335 RAGIAMVPEDRKRHGIVPILG-VGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
+ P G LSGG +Q+ +A+ L N VLILDE T +D ++ + + +++L
Sbjct: 394 TASPFLPIGR-LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 377 H-TVLVIAHHLETVM-MAKRVFLLDNGKLE 404
++V++ L V+ ++ RV ++ GKL+
Sbjct: 453 GVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSL 261
+L LNL I GE A++GP+G GKSTL+K++ Y L G IL + ++ +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80
Query: 262 RRHVGL 267
R H+G+
Sbjct: 81 RAHLGI 86
|
Length = 252 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 53/236 (22%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L ++L G + ++G +G GKSTL +++ + +G I+
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----GIK------ 69
Query: 264 HVGLVSQDITL-FSGTVAENI--GYRDLMTKID----------------------MERVE 298
VG + Q+ L + TV EN+ G ++ +D ++
Sbjct: 70 -VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRG----SSLSGGQRQRLAIARALYQNSSVLILDEA 354
A+A + R L + P + LSGG+R+R+A+ R L +L+LDE
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 355 TSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN--GKLEELNR 408
T+ LD+ S + Q + G TV+ + H R F LDN G + EL+R
Sbjct: 189 TNHLDAESVAWLEQHLQEYPG--TVVAVTH--------DRYF-LDNVAGWILELDR 233
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 60/201 (29%), Positives = 86/201 (42%), Gaps = 57/201 (28%)
Query: 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD-- 250
+SF A PL LD LHI E V L+G +G GKSTL K+ L+G +L+DD
Sbjct: 11 LSFSDA---PL-LDNAELHIEDNERVCLVGRNGAGKSTLMKI-------LNGEVLLDDGR 59
Query: 251 ----HDVQNIRL--DSLRRHVGLVSQDITLFSGTVAENIG--------YRDLMTKID--- 293
D+ RL D R G T++ VAE I Y D+ ++
Sbjct: 60 IIYEQDLIVARLQQDPPRNVEG------TVYD-FVAEGIEEQAEYLKRYHDISHLVETDP 112
Query: 294 -------MERVEHTARTANADEF----VRTLPQ-GYNTHIGPRGSSLS---GGQRQRLAI 338
+ +++ N + L Q G + ++LS GG ++ A+
Sbjct: 113 SEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD-----AALSSLSGGWLRKAAL 167
Query: 339 ARALYQNSSVLILDEATSALD 359
RAL N VL+LDE T+ LD
Sbjct: 168 GRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M L+L+ ++P + L+ A L ++LRK++++ + A + E L I VKA
Sbjct: 136 MFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKA 195
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKA---LIPQTVQLIYFGALFILCGGSLLVSGG 121
E E R+ + E +K T + Y L G+ LV G
Sbjct: 196 FGREEYELERY--DKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISG 253
Query: 122 SFDGCSLVSFITSLVFMIEPI 142
++ +F++ + + P+
Sbjct: 254 GLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 49/185 (26%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ + DN PL LNL + AGE +A+IG +G GK+TL + L+ +P SG + +
Sbjct: 324 NLTKGF-DNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE- 380
Query: 252 DVQNIRLDSLRRHVGLVSQD--------ITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
N +G +QD +TLF D M++ R
Sbjct: 381 ---NAN-------IGYYAQDHAYDFENDLTLF-----------DWMSQW---------RQ 410
Query: 304 ANADEFV------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
DE R L + I LSGG++ R+ + + Q +VL++DE T+
Sbjct: 411 EGDDEQAVRGTLGRLLFSQDD--IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468
Query: 358 LDSRS 362
+D S
Sbjct: 469 MDMES 473
|
Length = 530 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHH 385
LSGG+RQR+ IA AL +LI DE T+ALD + + Q + L + +L I H+
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 386 LETV-MMAKRVFLLDNGKLEELNRSTLL 412
L V +A RV ++ NG+ E NR+ L
Sbjct: 217 LSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
Length = 529 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLL-RLYDPL---SGCILVDDHDVQNIRLDSLRRHVGL 267
I+ GE ++G G G STL K + G I D + I+ R V
Sbjct: 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVY 142
Query: 268 VSQ-DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA----DEFVRT--LPQGYNTH 320
++ D+ TV E + + K R + +R A D ++ T L NT
Sbjct: 143 NAETDVHFPHLTVGETLDFAARC-KTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK 201
Query: 321 IGP---RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+G RG +SGG+R+R++IA A + + D AT LDS + L
Sbjct: 202 VGNDFVRG--VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATAL 246
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 28/188 (14%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
G AL+G +G GKSTL K L+ SG I + + +L +V S+++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ-SEEVDW 91
Query: 275 FSGTVAENI---------GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325
+ E++ G+ K D + V + EF + IG
Sbjct: 92 SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-------RHRQIG--- 141
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL----LVRQAVDRLLGHHTVLV 381
LSGGQ++R+ +ARA+ Q V++LDE + +D ++E L+R+ D T+LV
Sbjct: 142 -ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE---GKTMLV 197
Query: 382 IAHHLETV 389
H+L +V
Sbjct: 198 STHNLGSV 205
|
Length = 272 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 63/207 (30%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAK------LLLRLYDPLSGCILVDDHDVQNIRL 258
L L++ I V + G SG GKSTL RL L + + I +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLP---KFSRNKL--IFI 65
Query: 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
D L+ + + +GY L G
Sbjct: 66 DQLQFLIDV--------------GLGY---------------------------LTLGQK 84
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGH 376
S+LSGG+ QR+ +A L+ ++ ILDE ++ L + + + + L+
Sbjct: 85 L------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL 138
Query: 377 -HTVLVIAHHLETVMMAKRVFLLDNGK 402
+TV++I H+L+ +++ +++D G
Sbjct: 139 GNTVILIEHNLD--VLSSADWIIDFGP 163
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIR--LDS 260
+D ++ +R GE + + G G G++ L + L Y G I +D V IR +
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV-KIRNPQQA 335
Query: 261 LRRHVGLVSQD------ITLFSGTVAENIGYRDL-----MTKIDMERVEHTARTANADEF 309
+ + + +V +D + + V +NI L ++ID T +
Sbjct: 336 IAQGIAMVPEDRKRDGIVPVMG--VGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL--- 364
V+T + LSGG +Q+ +A+ L N +LILDE T +D ++ E+
Sbjct: 394 VKT------ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL 447
Query: 365 ---LVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
LV+Q V ++VI+ L V+ ++ RV ++ GKL
Sbjct: 448 INQLVQQGV-------AIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 52/230 (22%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHVG 266
+ +RAGE V L G G G+S L KLL +G + +D + +IR D++R +
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI-DIRSPRDAIRAGIM 331
Query: 267 LVSQD------ITLFSGTVAENIGYRDLMTKIDMERVEHTAR--------TANADEFVRT 312
L +D I + S VA+NI I R A NAD F+R+
Sbjct: 332 LCPEDRKAEGIIPVHS--VADNI-------NISARRHHLRAGCLINNRWEAENADRFIRS 382
Query: 313 L----PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL-- 364
L P I +LSGG +Q+ + R L ++ V++LDE T +D ++ E+
Sbjct: 383 LNIKTPSR-EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN 437
Query: 365 ----LVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNR 408
L Q V VL ++ L V+ +A R+ ++ G++ EL R
Sbjct: 438 VIYELAAQGV-------AVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480
|
Length = 501 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D++ I FK + +D++++ + GE L+G SG GKS +AK + + + +
Sbjct: 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRV 63
Query: 247 LVDDHDVQNIRLDSL--RRHVGLVSQDITL-FSGTV-----AENIGYRDLMTKIDMERVE 298
D +I L L R LV ++++ F +E +G R L+ I +
Sbjct: 64 TADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVG-RQLIQNIPAWTYK 122
Query: 299 ------HTARTANADEFVRTLPQGYNTHIGPRGS---SLSGGQRQRLAIARALYQNSSVL 349
R A E + + G H S L+ G+ Q++ IA AL +L
Sbjct: 123 GRWWQRFGWRKRRAIELLHRV--GIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL 180
Query: 350 ILDEATSALDSRSELLVRQAVDRL--LGHHTVLVIAHHLETV 389
I DE T++++ ++ + + + RL + T+L+I+H L+ +
Sbjct: 181 IADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI 222
|
Length = 330 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 29/219 (13%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIR 257
PLV ++L ++ G +AL+G SG GKS L + +G +L+D + +
Sbjct: 17 PLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG---KPVA 72
Query: 258 LDSLR-RHVGLVSQDI-TLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD---EFVRT 312
+LR R + + Q+ + F+ + R+ + + T A E
Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAAR 132
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-----ELLVR 367
+ + Y +SGG QR+ IA AL + +I DE T+ LD + +LL
Sbjct: 133 VLKLY-------PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLES 185
Query: 368 QAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
R LG +L++ H + V +A V ++ +G++ E
Sbjct: 186 IVQKRALG---MLLVTHDMGVVARLADDVAVMSHGRIVE 221
|
Length = 254 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
++F+ + V++ ++L I AGET+AL+G SG GKS A +LRL
Sbjct: 13 VAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL 58
|
Length = 529 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 45/184 (24%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F + SF Y PL+ LN I +A++GP+G GKST+ KL+ P SG +
Sbjct: 509 ISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV- 566
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK--IDMERVEHTARTAN 305
S + + + SQ ++ DL + + M R
Sbjct: 567 ----------FRSAKVRMAVFSQ----------HHVDGLDLSSNPLLYMMRC-------- 598
Query: 306 ADEFVRTLPQGYNTHIGPRGSS----------LSGGQRQRLAIARALYQNSSVLILDEAT 355
F Q H+G G + LSGGQ+ R+A A+ ++ +L+LDE +
Sbjct: 599 ---FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655
Query: 356 SALD 359
+ LD
Sbjct: 656 NHLD 659
|
Length = 718 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 51/184 (27%)
Query: 213 RAGETVALIGPSGGGKSTLAKLL------------LRL---------YDPLSG-CILVDD 250
R G AL+G SG GK+TL +L +R+ + +SG C D
Sbjct: 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 963
Query: 251 HDVQNIRLDSLRRHVGLVSQDITLFSG--TVAENIGYRDLMTKID--MERVEHTARTANA 306
H Q +SL ++S + + + + M +D ME VE N
Sbjct: 964 HSPQVTVRESL------------IYSAFLRLPKEVSKEEKMMFVDEVMELVE----LDNL 1007
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+ + LP G G LS QR+RL IA L N S++ +DE TS LD+R+ +V
Sbjct: 1008 KDAIVGLP-------GVTG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058
Query: 367 RQAV 370
+ V
Sbjct: 1059 MRTV 1062
|
Length = 1470 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 47/237 (19%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D++ I FK +D +D++++ + GE L+G SG GKS +AK + C
Sbjct: 5 DIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAI---------CG 55
Query: 247 LVDDH-----------DVQNIRLDSLRRHVGLVSQDITLFSGTV------AENIGYRDLM 289
+ D+ D+ +RL R LV ++++ +E +G R LM
Sbjct: 56 VTKDNWRVTADRMRFDDIDLLRLSPRERR-KLVGHNVSMIFQEPQSCLDPSERVG-RQLM 113
Query: 290 TKID--------MERVEHTARTANADEFVRTLPQGYNTHIGPRGS---SLSGGQRQRLAI 338
I +R R A E + + G H S L+ G+ Q++ I
Sbjct: 114 QNIPGWTYKGRWWQRFGW--RKRRAIELLHRV--GIKDHKDAMRSFPYELTEGECQKVMI 169
Query: 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAK 393
A AL +LI DE T+A++ ++ + + + RL ++ T+L+I+H L+ M+++
Sbjct: 170 AIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ--MLSQ 224
|
Length = 330 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 61/198 (30%)
Query: 200 NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259
P ++ G + GP+G GKST+ + G L R
Sbjct: 6 RFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAI--------GLALGGAQSATRRRSG 57
Query: 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
+ E + T Q
Sbjct: 58 VKAGC-----------------IVAAVSA-------------------ELIFTRLQ---- 77
Query: 320 HIGPRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
LSGG+++ A+A L + + ILDE LD R + +A+ L
Sbjct: 78 --------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129
Query: 376 HH-TVLVIAHHLETVMMA 392
V+VI H E +A
Sbjct: 130 KGAQVIVITHLPELAELA 147
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 62/249 (24%), Positives = 94/249 (37%), Gaps = 50/249 (20%)
Query: 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
+F+ +D L L L + AG++ A +G +G GKS LA+ L LSG +
Sbjct: 10 TFRLSDTKTLQLPSL--TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67
Query: 254 QNIRLDSL---------RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
+ + L R + ++S T AE I + V+ AR
Sbjct: 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEII----------QDEVKDPARCE 117
Query: 305 N-ADEFVRTLPQGYNTHIGP----RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A +F I R LS G+ ++ + +AL +LILDE LD
Sbjct: 118 QLAQQF----------GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
Query: 360 SRSELLVRQAVDRLL------GHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL-NRSTLL 412
S RQ + LL G VLV+ E + +L + L E R +L
Sbjct: 168 VAS----RQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223
Query: 413 GSNHDSLVS 421
+LV+
Sbjct: 224 Q---QALVA 229
|
Length = 490 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRR 263
++ ++ +R GE + + G G G++ L K+L SG + +D H+V D L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 264 HVGLVSQDIT---LFSG-TVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLP 314
+ +S+D L G +V EN+ +T + ++H +F+R
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMS----LTALRYFSRAGGSLKHADEQQAVSDFIRL-- 381
Query: 315 QGYNTHIGPRGSS---LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+N + LSGG +Q++AIAR L VLILDE T +D
Sbjct: 382 --FNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 326 SSLSGGQRQRLAIARALYQNS---SVLILDEATSAL---DSRSELLVRQAVDRLLGH-HT 378
++LSGG+ QR+ +A+ L + S ++ ILDE T+ L D + L V + RL+ +T
Sbjct: 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEV---LHRLVDKGNT 877
Query: 379 VLVIAHHLETVMMA 392
V+VI H+L+ + A
Sbjct: 878 VIVIEHNLDVIKTA 891
|
Length = 935 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
LD L + G+TVAL+G SG GKSTL LL
Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALL 216
|
Length = 356 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAH 384
LSGG+R RL +AR + S++LILDE T+ LD + L+ + +D G TVL+++H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQG--TVLLVSH 495
|
Length = 635 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 323 PRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDS-RSELLVRQAVD--RL 373
RG SGG++ RLA+A N +L LDE T+ LD E + + ++ +
Sbjct: 112 MRGR-CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170
Query: 374 LGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409
+ ++VI H E V A ++ + + + +S
Sbjct: 171 QKNFQLIVITHDEELVDAADHIYRV---EKDGRQKS 203
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 47/199 (23%)
Query: 184 INGDVKFCNISFKYA-DNMPL-----------------VLDQLNLHIRAGETVALIGPSG 225
+N VKF +++ KY N P L+ ++ + GE V +IG +G
Sbjct: 1 MNYKVKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNG 60
Query: 226 GGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDSLRRHVGLVSQDITLFSGTVAE 281
GKSTL+ L+ + P G + D++ I + S GL Q +G E
Sbjct: 61 SGKSTLSNLIAGVTMPNKGTV-----DIKGSAALIAISS-----GLNGQ----LTGI--E 104
Query: 282 NIGYRDLMTKIDMERV-EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340
NI + LM + E++ E + + + Q T+ S G + RL A
Sbjct: 105 NIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY--------SSGMKSRLGFAI 156
Query: 341 ALYQNSSVLILDEATSALD 359
+++ N +L++DEA S D
Sbjct: 157 SVHINPDILVIDEALSVGD 175
|
Length = 549 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 5e-04
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH 385
+ LSGG+R+R+A+ R L + +L+LDE T+ LD+ S + Q + G TV+ + H
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPG--TVVAVTH- 218
Query: 386 LETVMMAKRVFLLDN--GKLEELNR 408
R F LDN G + EL+R
Sbjct: 219 -------DRYF-LDNVAGWILELDR 235
|
Length = 556 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 63/245 (25%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-P---LSGCILVDDHDVQNIRLDS 260
+D+++ ++ GE V ++G SG GKS + ++ L D P ++ + + D+Q I +
Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS-EK 81
Query: 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---------MERVE------HTARTAN 305
RR+ LV ++ + ++D MT ++ ME ++ R
Sbjct: 82 ERRN--LVGAEVAMI---------FQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQR 130
Query: 306 ADEFVRTLPQGYNTHIG-PRGSS--------LSGGQRQRLAIARALYQNSSVLILDEATS 356
A + + +G P +S LSGG QR+ IA A+ +LI DE T+
Sbjct: 131 AIDLL--------NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182
Query: 357 ALDSRSE------LLVRQAVDR----LLGHHTVLV--IAHHLETVMMAKRVFLLDNGKLE 404
ALD + LL Q + L+ H LV AH + VM A +V ++ GK
Sbjct: 183 ALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI-IVMYAGQV--VETGKAH 239
Query: 405 ELNRS 409
++ R+
Sbjct: 240 DIFRA 244
|
Length = 326 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSS---VLILDEATSAL---DSRSELLVRQA-VDR 372
+G ++LSGG+ QR+ +A+ L + S+ + ILDE T+ L D + L V Q VD+
Sbjct: 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221
Query: 373 LLGHHTVLVIAHHLETV 389
+TV+VI H+L+ +
Sbjct: 222 ---GNTVVVIEHNLDVI 235
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 9e-04
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 37/182 (20%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDP-------LSGCILVDDHDVQN 255
+L L+L I G AL+G +G GKSTL K L L ++G + ++ +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 256 I---RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR---TANADEF 309
I RL LR + +Q FS R+++ + R H R + D
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSA--------REIVL---LGRYPHARRAGALTHRDGE 124
Query: 310 V--RTLPQ-GYNTHIGPRGSSLSGGQRQRLAIARALYQ---------NSSVLILDEATSA 357
+ + L G +G ++LSGG+ R+ AR L Q L+LDE T+A
Sbjct: 125 IAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAA 184
Query: 358 LD 359
LD
Sbjct: 185 LD 186
|
Length = 272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 41/246 (16%)
Query: 156 EPAIERLFD----LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLH 211
EPA E +FD + + + ++I + + +N K Y+ +D+L +
Sbjct: 1908 EPAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKV------YSGTSSPAVDRLCVG 1961
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD 271
+R GE L+G +G GK+T K+L +G V D + +
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKML-------TGDTTVTSGDAT------------VAGKS 2002
Query: 272 ITLFSGTVAENIGY-------RDLMTKIDMERVEHTARTANADEFVRTL-----PQGYNT 319
I V +N+GY DL+T + + R A+E + G +
Sbjct: 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL 2062
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
+ + SGG +++L+ A AL +++LDE T+ +D ++ ++ + ++
Sbjct: 2063 YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122
Query: 380 LVIAHH 385
+V+ H
Sbjct: 2123 VVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 198 ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-- 255
+ P + D ++ + GE + + G G ++ + + L + + +G I + + N
Sbjct: 258 SLRQPSIRD-VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHN 316
Query: 256 ----IR-----LDSLRRHVGLVSQ-DITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I + RR G+ + DI F+ ++ Y++ + +D R++ +
Sbjct: 317 ANEAINHGFALVTEERRSTGIYAYLDIG-FNSLISNIRNYKNKVGLLDNSRMKSDTQWVI 375
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
V+T G+ T IG SLSGG +Q++ I R L +L+LDE T +D
Sbjct: 376 DSMRVKT--PGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
G+ +ALIGP+G GK+TL KL+L SG I
Sbjct: 345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
Length = 635 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 326 SSLSGGQRQRLAIARALYQN-SSVL-ILDEATSALDSRS-----ELLVRQAVDRLLGHHT 378
+LSGG+ QR+ +A + + VL +LDE + L R E L R R LG +T
Sbjct: 480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL---RDLG-NT 535
Query: 379 VLVIAHHLETVMMAKRV 395
V+V+ H +T+ A +
Sbjct: 536 VIVVEHDEDTIRAADHI 552
|
Length = 935 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGG+R RL +A+ L Q +VL+LDE T+ LD
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ SGG R R+A+ARAL+ +L+LDE T+ LD
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
+L LNL +R GE A++GP+G GKSTL+ L
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATL 47
|
Length = 248 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 326 SSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLLG----HHT 378
SSLSGG+ QRL +A L S ++ +LDE T+ L + ++ + L HT
Sbjct: 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD---IKALIYVLQSLTHQGHT 864
Query: 379 VLVIAHHLETVMMAKRVFLL 398
V++I H++ V +A V L
Sbjct: 865 VVIIEHNMHVVKVADYVLEL 884
|
Length = 1809 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Query: 327 SLSGGQRQRLAIARALYQNS---SVLILDEATSAL--DSRSELLVRQAVDRLLGH-HTVL 380
+LSGG+ QR+ +A+ L + S ++ ILDE T+ L D +LL + + RL+ +TV+
Sbjct: 829 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL--EVLQRLVDKGNTVV 886
Query: 381 VIAHHLETVMMA 392
VI H+L+ + A
Sbjct: 887 VIEHNLDVIKTA 898
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 326 SSLSGGQRQRLAIARALYQN-SSVL-ILDEATSALDSRSELLVRQAVDRL--LGHHTVLV 381
+LSGG+ QR+ +A + + VL +LDE + L R + + + RL LG +TVLV
Sbjct: 136 PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG-NTVLV 194
Query: 382 IAHHLETVMMAKRV 395
+ H +T+ A V
Sbjct: 195 VEHDEDTIRAADHV 208
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSAL 358
N + +G + SLSGG++ R+A+A+ L + S+LI+DE T+ L
Sbjct: 787 NITVSRGGMVEGID--------SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFL 838
Query: 359 DS--RSEL--LVRQAVDRLLGHHTVLVIAHHLE 387
D R+ L ++ ++ V++I+HH E
Sbjct: 839 DEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE 871
|
Length = 895 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 426 | |||
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.98 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.97 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.97 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.97 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.97 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.96 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.95 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.95 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.95 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.94 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.93 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.93 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.93 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.91 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.9 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.9 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.89 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.88 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.87 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.87 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.87 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.87 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.85 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.84 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.84 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.83 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.82 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.81 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.81 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.79 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.78 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.77 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.75 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.74 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.74 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.73 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.71 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.71 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.65 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.65 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.63 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.6 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.59 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.57 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.56 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.53 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.52 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.49 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.48 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.47 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.46 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.43 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.43 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.42 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.36 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.36 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.33 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.33 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.28 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.28 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.28 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.24 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.24 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.22 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.22 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.21 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.19 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.18 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.17 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.13 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.13 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.13 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.12 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.07 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.04 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.02 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.0 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.94 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.91 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.87 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.8 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.79 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.78 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.75 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.73 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.71 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.67 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.66 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.64 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.63 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.62 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.62 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.61 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.57 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.57 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.56 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.56 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.55 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.54 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.5 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.45 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.44 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.42 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.4 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.38 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.36 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.32 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.31 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.31 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.3 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.28 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.28 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.26 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.26 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.26 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.25 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.25 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.24 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.23 |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-93 Score=731.88 Aligned_cols=416 Identities=41% Similarity=0.597 Sum_probs=382.1
Q ss_pred EeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 2 ATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 2 ~~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
.++|+++||.|++++++.+|++.++..+++++.++.+++.+++.++.+...+|.+++++|||+|+.|..+.++|.+..++
T Consensus 280 ~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~ 359 (716)
T KOG0058|consen 280 LGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLRE 359 (716)
T ss_pred HHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
.++...|.......+.....+. ....+.++++|++++..|.+|.|.+++|+.|...+-.++..++..|.++.++..|.+
T Consensus 360 ~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~ 439 (716)
T KOG0058|consen 360 VLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439 (716)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 8777655554443333333332 345677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
|++|++|.+|..... +...+....+.|+|+||+|+||.++ .++|+|+||+|+|||+||||||||+||||++++|.++|
T Consensus 440 rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 440 RVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999999998876544 2222224678999999999999763 46999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|++++++..||++||+|.|||.||++||+|||.||.+ +.++++++.+++++++++|+..+|+||||
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNT 596 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+||+|.+|||||||||||||||++||.||||||+||+||.++|..|+++|.+..+++|||+|+||+++++.||+|+|++
T Consensus 597 ~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 597 VVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVID 676 (716)
T ss_pred ccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCEEEEeccccccccCcchhh
Q 014366 400 NGKLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~~~l~ 420 (426)
+|+++|.|+|++|.++++.++
T Consensus 677 ~G~V~E~G~h~eLl~~~~gly 697 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLSKPNGLY 697 (716)
T ss_pred CCeEEecccHHHHhhCcccHH
Confidence 999999999999988875443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-87 Score=714.25 Aligned_cols=412 Identities=37% Similarity=0.538 Sum_probs=384.8
Q ss_pred EeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 2 ATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 2 ~~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
.++|+++||.|++++++.+|+++++..++.+.+++..++..+..++.++.+.|+++|++|||+.+.|.++..+|++...+
T Consensus 285 l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~ 364 (709)
T COG2274 285 LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAK 364 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
..+..++..........+..++ .+..++++|+|+++|..|.+|+|.+++|.++...+..|+..+.+.+.+++++..+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~ 444 (709)
T COG2274 365 QVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALE 444 (709)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877766665555544 345788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|+.++++.|+|..........+...++|+++||+|+|+..++++|+|+||+|++||++||||+||||||||+|+|+|+|+
T Consensus 445 rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 445 RLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred HHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 99999999887543322233445578999999999999876689999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|++||.|+++++...+|++||||+||+.+|++||+||++++.+ +.+++++.++++.+++++|+.++|.||+|.
T Consensus 525 p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 525 PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999986 456899999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||+|.+||||||||++|||||+++|+|||||||||+||+++|+.|.+.|.+...++|+|+||||+++++.||||+||++
T Consensus 603 v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~ 682 (709)
T COG2274 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682 (709)
T ss_pred cccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CEEEEeccccccccC
Q 014366 401 GKLEELNRSTLLGSN 415 (426)
Q Consensus 401 G~i~e~g~~~~l~~~ 415 (426)
|+|+|+|+++++.+.
T Consensus 683 Gkiv~~gs~~ell~~ 697 (709)
T COG2274 683 GKIVEQGSHEELLAQ 697 (709)
T ss_pred CceeccCCHHHHHHh
Confidence 999999999888765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-83 Score=689.25 Aligned_cols=411 Identities=34% Similarity=0.484 Sum_probs=376.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+-|+++|.++++++++.|++++......+.+.....+..+..++.+....|++++++||++|+.|+++.+.|.+..+...
T Consensus 802 iaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~ 881 (1228)
T KOG0055|consen 802 IAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPR 881 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...++..+..+...+.+ ++++...+++++|.+++..|.++...++-.+..+.+-...+.+.....+++.++..|+.++
T Consensus 882 ~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 882 KSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 888888777776655554 3456678899999999999999999988888877777777888888999999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 163 ~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++++.++..+... .....+...|+|+++||+|+||.++ .++|+|+||+|++|+.+||||||||||||.+.+|.++|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999887543322 2222334568999999999999653 469999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|.|.+||+|+++++++++|+++|.|.|+|.||++||||||.||.. +.+.+++.+|++.+++++|+..||+||||.
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence 999999999999999999999999999999999999999999999942 378999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||+|.+||||||||||||||++|||+||||||+||+||.++|+.|+++|++...++|+|+|+||++++++||.|+|+++
T Consensus 1120 vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~ 1199 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKN 1199 (1228)
T ss_pred cCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+|+|+|+|++|.++.
T Consensus 1200 G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1200 GKVVEQGTHDELLAKR 1215 (1228)
T ss_pred CEEEecccHHHHHhCC
Confidence 9999999999888754
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-80 Score=672.62 Aligned_cols=411 Identities=32% Similarity=0.467 Sum_probs=370.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++...+.
T Consensus 278 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 357 (694)
T TIGR03375 278 LVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAAL 357 (694)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..........+...+ .+..++++++|++++..|.+|+|.++++.++...++.|+..+...+..++.+..+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~r 437 (694)
T TIGR03375 358 ARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555444443333 3345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..............+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+|+|+|+|+|
T Consensus 438 i~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 438 LDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred HHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999877653221111111223467999999999986555799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++..++|++++||||++++|++||+|||.++++ +.++++++++++.++++++++.+|+|+||.+
T Consensus 518 ~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence 99999999999999999999999999999999999999999999865 4678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||+++++.||+|++|++|
T Consensus 596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
+++|.|+|+++.++
T Consensus 676 ~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 676 RIVADGPKDQVLEA 689 (694)
T ss_pred EEEeeCCHHHHHHH
Confidence 99999999887654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-80 Score=661.15 Aligned_cols=409 Identities=23% Similarity=0.336 Sum_probs=348.4
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 235 (588)
T PRK11174 156 IAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDF 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788999999999999999998888899999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSL---------VSFITSLVFMIEPIQGVGKAYNEF 152 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l---------~~~~~~~~~~~~p~~~l~~~~~~~ 152 (426)
.+...+..+.......+..... +..+++++++++.+. |.+++|.+ ++++++...++.|+..++..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~ 314 (588)
T PRK11174 236 RQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAK 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6665555444333333322221 222233334444333 66776653 233355667889999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHH
Q 014366 153 KQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 153 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl 232 (426)
+++..+.+|+.++++.+++..............+.|+++||+|.|+++ +++|+|+||+|++||++||+||||||||||+
T Consensus 315 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~ 393 (588)
T PRK11174 315 AQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLL 393 (588)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999998765422111100011123469999999877654 4699999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHh
Q 014366 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT 312 (426)
Q Consensus 233 ~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (426)
++|+|+| |++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||+++++ +.++++++++++.+++++++++
T Consensus 394 ~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~ 470 (588)
T PRK11174 394 NALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPL 470 (588)
T ss_pred HHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHh
Confidence 9999999 999999999999999999999999999999999999999999999864 4689999999999999999999
Q ss_pred cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhc
Q 014366 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMA 392 (426)
Q Consensus 313 lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 392 (426)
+|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.|
T Consensus 471 lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~a 550 (588)
T PRK11174 471 LPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQW 550 (588)
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CEEEEEeCCEEEEeccccccccCc
Q 014366 393 KRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 393 D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|+|++|++|+++|.|+++++.++.
T Consensus 551 D~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 551 DQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred CEEEEEeCCeEeecCCHHHHHhcc
Confidence 999999999999999999887653
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-80 Score=670.23 Aligned_cols=407 Identities=29% Similarity=0.420 Sum_probs=366.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++...+.
T Consensus 268 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 347 (686)
T TIGR03797 268 GLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQ 347 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999988888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+...+...+ .+..++++++|++++..|.+|+|.++++.++...+..|+..+...+..++++..+.+|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 427 (686)
T TIGR03797 348 RKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWER 427 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665555444443333 3446677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..... .......+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+|+|+|+|+|
T Consensus 428 i~~~l~~~~e~~~~~--~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 428 AKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred HHHHhcCCcccccCc--CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 999998765532211 111123457999999999975556799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++.+++|++|+|||||+++|++|++|||.++.+ .++++++++++.++++++++++|+|+||.+
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~i 582 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVI 582 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999864 578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++++.+.|+++ ++|+|+||||++.++.||+|++|++|
T Consensus 583 ge~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAG 660 (686)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999887 57999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+++|.|+++++.++.
T Consensus 661 ~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 661 RVVQQGTYDELMARE 675 (686)
T ss_pred EEEEECCHHHHHhCC
Confidence 999999998877553
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-80 Score=656.51 Aligned_cols=408 Identities=42% Similarity=0.645 Sum_probs=367.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++.++|.+++++++..|++.++..++.++.++..++.++..+++++.+.|.++|++++|+|+.++.+.++|.+..+..
T Consensus 145 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~ 224 (567)
T COG1132 145 VLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEEL 224 (567)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999888999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+............. ...+..++++++|.+++..+.+++|.+++++.+...+..|+..+...+..++.+..+.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~r 304 (567)
T COG1132 225 RRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAER 304 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554444444332222 233446667778899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.... .....+.|+++||+|+|+++ +++|+|+||++++||++||||||||||||++++|+|+|+|
T Consensus 305 i~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 305 LFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred HHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 99999986653332221 22334679999999999853 4799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++..++|++|++||||++||++||+|||.+|++ +.++++++++++.+++++++.++|+||||.+
T Consensus 382 ~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~--~at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 382 TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP--DATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccee
Confidence 99999999999999999999999999999999999999999999986 3678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
||+|.+||||||||++||||+++||++||||||||+||+++|+.+++.+.++.+++|+|+|+||+++++.||+|+||++|
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G 539 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG 539 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
+++|.|+|++|.++
T Consensus 540 ~i~e~G~h~eLl~~ 553 (567)
T COG1132 540 RIVERGTHEELLAK 553 (567)
T ss_pred EEEEecCHHHHHHc
Confidence 99999999988776
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-80 Score=669.93 Aligned_cols=410 Identities=30% Similarity=0.419 Sum_probs=367.0
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++..+..++.++..++..+.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 286 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 286 LLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+...+...+ .+..++++++|++++..|.+|+|.++++.++...++.|+..+...+..++++..+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555554444433333 3445677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCC----C-CCCC-CCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 014366 162 LFDLTKFKSKVIEKP----D-AVSL-DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 162 i~~~l~~~~~~~~~~----~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll 235 (426)
+.++++.+++..... . .... ....+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+|+|
T Consensus 446 i~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred HHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999998766532211 0 0111 122467999999999986556799999999999999999999999999999999
Q ss_pred hcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCC
Q 014366 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315 (426)
Q Consensus 236 ~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~ 315 (426)
+|+|+|++|+|.+||.|+++++.+++|++|+||||++++|++|++|||.++.+ +.++++++++++.++++++++++|+
T Consensus 526 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~ 603 (710)
T TIGR03796 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPG 603 (710)
T ss_pred hcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999998754 4678999999999999999999999
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEE
Q 014366 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 316 g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i 395 (426)
|+||.+|++|.+||||||||++||||++++|++||||||||+||+++++++.+.|++ .++|+|+||||++++..||||
T Consensus 604 gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~I 681 (710)
T TIGR03796 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEI 681 (710)
T ss_pred cccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999999999987 478999999999999999999
Q ss_pred EEEeCCEEEEeccccccccCc
Q 014366 396 FLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 396 ~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++|++|++++.|+++++.++.
T Consensus 682 ivl~~G~i~~~G~~~~Ll~~~ 702 (710)
T TIGR03796 682 IVLERGKVVQRGTHEELWAVG 702 (710)
T ss_pred EEEeCCEEEEecCHHHHHHcC
Confidence 999999999999998887553
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-80 Score=624.05 Aligned_cols=410 Identities=29% Similarity=0.424 Sum_probs=359.1
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+.++++||.-++|.++++|++++++..++++.++.+++++....++++.+.|.++|+.|+|.||..+...++..+...+.
T Consensus 133 i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~f 212 (559)
T COG4988 133 IAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDF 212 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGAL-FILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
.+..++.-++..+......++ +.+.. +.+.+|..++..|.++....+.++.+..-++.|++.++..||.-+.+..+.+
T Consensus 213 R~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d 292 (559)
T COG4988 213 RKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAAD 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 555555544443333333333 22222 2233344444337999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCC-CCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 161 RLFDLTKFKSKVIEKPDA-VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++..+++.|.+....... ......+..++.+|++|.|++++ ++++|+||++++|+.+||||+||||||||+++|+|++
T Consensus 293 ~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred HHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 999999877654322211 11111223455669999999875 7999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+++++++...||++++||+|+|++|++|++|||.++++ +.+++++.++++.+++.++++. |+|+||
T Consensus 372 ~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~-p~GLdt 448 (559)
T COG4988 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--DASDEEIIAALDQAGLLEFVPK-PDGLDT 448 (559)
T ss_pred CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcC-CCcccc
Confidence 9999999999999999999999999999999999999999999999976 4679999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+||+|.+|||||+||+++||||+++++++|||||||+||.++|+.|.+.|.++.+++|+|+||||+..+..||+|++|+
T Consensus 449 ~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld 528 (559)
T COG4988 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLD 528 (559)
T ss_pred hhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+++|+|+|+++.+++
T Consensus 529 ~G~l~~~g~~~~L~~~~ 545 (559)
T COG4988 529 NGRLVEQGTHEELSEKQ 545 (559)
T ss_pred CCceeccCCHHHHhhcC
Confidence 99999999999887664
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-80 Score=667.96 Aligned_cols=410 Identities=27% Similarity=0.419 Sum_probs=366.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 288 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 367 (708)
T TIGR01193 288 LFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDY 367 (708)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..........+...+ .+..++++++|++++..|.+|+|.++++.++...++.|+..+...+..++.+..+.+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 447 (708)
T TIGR01193 368 LNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNR 447 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555444433333332 2345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..............+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|
T Consensus 448 i~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 448 LNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred HHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 999998766542221111112234679999999999754 4799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|++||.|+++++.+++|++|+||||++++|++||+|||.++.. ++.++++++++++.++++++++++|+||||.+
T Consensus 527 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i 605 (708)
T TIGR01193 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605 (708)
T ss_pred CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEe
Confidence 99999999999999999999999999999999999999999999842 24678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.|++. +++|+|+||||+++++.||+|++|++|
T Consensus 606 ~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHG 684 (708)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999886 578999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
+++|.|+++++.++
T Consensus 685 ~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 685 KIIEQGSHDELLDR 698 (708)
T ss_pred EEEEECCHHHHHhc
Confidence 99999999887654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-79 Score=648.82 Aligned_cols=411 Identities=34% Similarity=0.521 Sum_probs=366.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||++|.++.+.++|++..++.
T Consensus 158 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 237 (582)
T PRK11176 158 IMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRM 237 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 35688999999999999999888888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+..........++ .+..++++++|++++..|.+++|.+++++++...++.|+..+...+..++.+..+.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 317 (582)
T PRK11176 238 RQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666655544444333332 2335556677888899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..... ...++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|
T Consensus 318 i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 318 LFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred HHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 999988665422111 111223457999999999986556799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++.+++|++|+||||++.+|++|++|||.++.+ ...++++++++++.++++++++++|+|+||.+
T Consensus 396 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i 474 (582)
T PRK11176 396 DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDFINKMDNGLDTVI 474 (582)
T ss_pred CCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC-CCCCHHHHHHHHHHhCcHHHHHhcccccCcee
Confidence 99999999999999999999999999999999999999999999864 23678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|
T Consensus 475 g~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+++|.|+++++.++.
T Consensus 555 ~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 555 EIVERGTHAELLAQN 569 (582)
T ss_pred EEEEeCCHHHHHhCC
Confidence 999999998877653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-79 Score=660.42 Aligned_cols=409 Identities=34% Similarity=0.489 Sum_probs=361.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||.+++++++.+|+.+++..+++++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++.
T Consensus 294 ~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 373 (711)
T TIGR00958 294 GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEET 373 (711)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+............... .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+.+|
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~r 453 (711)
T TIGR00958 374 LQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEK 453 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555444333332222222 2334566678999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+.++++.+++....... .+.+..+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+
T Consensus 454 i~~~l~~~~~~~~~~~~-~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 454 VFEYLDRKPNIPLTGTL-APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred HHHHhCCCCCCCCCCCC-CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 99999876553222111 111234679999999999854 3579999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|.+||+|+++++.+++|++|+||||+|++|++|++|||.++.+ +.+++++.++++.++++++++++|+|+||.
T Consensus 533 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 533 PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT--DTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 999999999999999999999999999999999999999999999864 456889999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+ . ...+++|+|+||||+++++.||+|++|++
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKK 688 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998 3 23467899999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+++|.|+|++|.+++
T Consensus 689 G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 689 GSVVEMGTHKQLMEDQ 704 (711)
T ss_pred CEEEEeeCHHHHHhCC
Confidence 9999999999887664
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=662.77 Aligned_cols=411 Identities=34% Similarity=0.507 Sum_probs=369.7
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
.-|++.|+|+++++.+.|++.+....+.+.+.+...+.++..++..+..+|++.++|||.+|+.|+.+.++|.+......
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...++..+..+...+.. +++......+|+|..++..+..+.|.++..+..+..-...+.+....+..+..+.+++.++
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 777776666655544443 3344567788999999999999998887766655555556777778888999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 163 ~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++++..+...... .........+.|+|+||+|+||.++ .++|+|+||+|++|+++||||||||||||++++|.|+|+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998776553322 1222333568899999999999764 479999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|++||.|+++++.+++|++||.|+|+|.||++||+|||.||.+ +.+.+++.++++.+++++|+..+|+||||.
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 999999999999999999999999999999999999999999999986 568999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||+|.+|||||||||||||||++||+|||||||||+||+++|+.|+++|++..+++|.|+|+||++++++||+|++|++
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEE 562 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+|+|.|+|+||..++
T Consensus 563 G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIALG 578 (1228)
T ss_pred CEEEEecCHHHHHhcc
Confidence 9999999999888765
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-77 Score=636.93 Aligned_cols=409 Identities=25% Similarity=0.343 Sum_probs=356.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALV-IAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
++|+++||.+++++++++|+++++ ..++.++.++..++.++..+++++.+.|.++|+++||+||.|+.+.++|++..++
T Consensus 153 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 232 (574)
T PRK11160 153 IGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQ 232 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHH
Confidence 467899999999988888877654 4566788888889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVF-MIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~-~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
..+...+..+..........++ ....++++++|++++ .|.+++|.+++++.+... ...|+..+...+..++++..++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~ 311 (574)
T PRK11160 233 WLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASA 311 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666665554443333332 233445566777774 788999999998877644 4578899999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|+.++++.+++........ .....+.|+++||+|+|+++.+++|+|+||++++||++||+||||||||||+++|+|+|
T Consensus 312 ~ri~~ll~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 312 RRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred HHHHHHHhCCCCCCCCcccC-CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 99999998766532211111 11234579999999999865457999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+++++++..++|++|+||||++++|++|++||+.++.+ +.++++++++++.+++++++++ |+||||
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~-p~GldT 467 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLED-DKGLNA 467 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcC-ccccCc
Confidence 9999999999999999999999999999999999999999999999864 4578999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++++..||+|++|+
T Consensus 468 ~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 468 WLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+++|.|+++++.++.
T Consensus 548 ~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 548 NGQIIEQGTHQELLAQQ 564 (574)
T ss_pred CCeEEEeCCHHHHHhcC
Confidence 99999999998887654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=648.82 Aligned_cols=411 Identities=36% Similarity=0.530 Sum_probs=369.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 271 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 350 (694)
T TIGR01846 271 AVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAY 350 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...........+ .+..++++++|++++..|.+|+|.++++.++...+..|+..+...+..++++..+.+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 430 (694)
T TIGR01846 351 VAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555444443333 3345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++.... .....+...+.|+++||+|+|++..+++|+|+||+|++||++||+|+||||||||+|+|+|+|+|
T Consensus 431 i~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 431 LGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred HHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876653221 11112223467999999999976545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|++||+++++++.+++|++++||||++.+|++|++||+.++.+ +.++++++++++.++++++++++|+|+||.+
T Consensus 510 ~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i 587 (694)
T TIGR01846 510 QHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587 (694)
T ss_pred CCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEe
Confidence 99999999999999999999999999999999999999999999764 4578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
+++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|
T Consensus 588 ~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKG 667 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.++.
T Consensus 668 ~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 668 QIAESGRHEELLALQ 682 (694)
T ss_pred EEEEeCCHHHHHHcC
Confidence 999999998877654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-77 Score=632.88 Aligned_cols=411 Identities=37% Similarity=0.568 Sum_probs=367.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||++++++++++|+.+++..++.++.++..++..+..++..+.+.|.++|+++||.+|.++.+.++|++..++.
T Consensus 147 ~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 226 (571)
T TIGR02203 147 IVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRN 226 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+.......+...+ .+..++++++|++++..|.+|+|.++++.++..++..|+..+...+..+++++.+.+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 306 (571)
T TIGR02203 227 RRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAES 306 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544444333332 3345667778899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++...... ......+.|+++||+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|
T Consensus 307 i~~~l~~~~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 307 LFTLLDSPPEKDTGTR--AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred HHHHHcCCCCCCCCCC--CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 9999976654322111 11123457999999999976545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+++++++.+++|++++|+||+|++|++|++|||.++.+ .+.++++++++++.+++++++.++|+|+||.+
T Consensus 385 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i 463 (571)
T TIGR02203 385 DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-EQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463 (571)
T ss_pred CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-CCCCHHHHHHHHHHcChHHHHHhCcCccccee
Confidence 99999999999999999999999999999999999999999999863 14678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|
T Consensus 464 ~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDG 543 (571)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.+++
T Consensus 544 ~i~~~g~~~~l~~~~ 558 (571)
T TIGR02203 544 RIVERGTHNELLARN 558 (571)
T ss_pred EEEeeCCHHHHHHcC
Confidence 999999998876543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-77 Score=632.59 Aligned_cols=406 Identities=27% Similarity=0.398 Sum_probs=351.6
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+.+++..+..++.++..++..+..++.++.+.|.++|+++||+||.++.+.++|.+..++.
T Consensus 158 ~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 237 (592)
T PRK10790 158 VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSH 237 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHH
Confidence 35678999999999988898888777788888888888888999999999999999999999999999999999877766
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALI-PQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
.+...+..+..... .....++. +..+++++++++ +..|.+++|.+++++.+...+..|+..+...+..++++..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ 316 (592)
T PRK10790 238 YMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGE 316 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544433322 11111111 111222223333 5789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|+.++++.+++.... . ..+...+.|+++||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+|+
T Consensus 317 ri~~~l~~~~~~~~~-~--~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 317 RVFELMDGPRQQYGN-D--DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred HHHHHhcCCCccCCC-C--ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 999998765432111 1 111223579999999999854 469999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|.+||.|+++++.+++|++|+||||+|.+|++|++|||.+++ +.++++++++++.++++++++++|+|+||.
T Consensus 393 p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 393 LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC---CCCHHHHHHHHHHcCcHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999985 357899999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++
T Consensus 470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998778999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|++++.|+++++.++.
T Consensus 550 G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQ 565 (592)
T ss_pred CEEEEEcCHHHHHhCC
Confidence 9999999998877553
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-76 Score=628.78 Aligned_cols=409 Identities=32% Similarity=0.482 Sum_probs=361.6
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.||.++.+.++|.+..++..
T Consensus 150 ~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~ 229 (588)
T PRK13657 150 LALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLL 229 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHH
Confidence 45789999999999999998888888899999999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+......+......++ .+..++++++|++++.+|.+++|.++++..++..+..|+..+...+..+..+..+.+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i 309 (588)
T PRK13657 230 AAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEF 309 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544444333333322 23456667789999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.++++.+++..............+.|+++||+|+|+++ +++|+|+||++++||+++|+|+||||||||+|+|+|+|+|+
T Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~ 388 (588)
T PRK13657 310 FEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ 388 (588)
T ss_pred HHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 99987654322111111111223479999999999854 46999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|+|.+||+++.+++..++|++|+||||+|.+|++|++|||.++.+ +.++++++.+++.++++++++++|+|+||.+|
T Consensus 389 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~ 466 (588)
T PRK13657 389 SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVG 466 (588)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchhc
Confidence 9999999999999999999999999999999999999999999864 45788999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|+
T Consensus 467 ~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546 (588)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999998877899999999999999999999999999
Q ss_pred EEEeccccccccC
Q 014366 403 LEELNRSTLLGSN 415 (426)
Q Consensus 403 i~e~g~~~~l~~~ 415 (426)
+++.|+++++..+
T Consensus 547 i~~~g~~~~l~~~ 559 (588)
T PRK13657 547 VVESGSFDELVAR 559 (588)
T ss_pred EEEeCCHHHHHHC
Confidence 9999999877644
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=617.94 Aligned_cols=407 Identities=25% Similarity=0.389 Sum_probs=358.6
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++.+|+++++..+..++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++.
T Consensus 134 ~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 213 (544)
T TIGR01842 134 LVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKY 213 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHH
Confidence 35789999999999888888887777778888888889999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..............+ .+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++.+..+.+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 293 (544)
T TIGR01842 214 LSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKR 293 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544444333333222 2335566778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++.... ...+...+.|+++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|
T Consensus 294 i~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 370 (544)
T TIGR01842 294 LNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370 (544)
T ss_pred HHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 99999765543211 111122357999999999976545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+++.+++..++|++++||||+|++|++|++||+.++.+ +.++++++++++.++++++++++|+|+||.+
T Consensus 371 ~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred CCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999987653 3578899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++. +++|+|+||||++.+..||+|++|++
T Consensus 449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~ 528 (544)
T TIGR01842 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528 (544)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999885 57899999999999889999999999
Q ss_pred CEEEEecccccccc
Q 014366 401 GKLEELNRSTLLGS 414 (426)
Q Consensus 401 G~i~e~g~~~~l~~ 414 (426)
|++++.|+++++.+
T Consensus 529 G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 529 GRIARFGERDEVLA 542 (544)
T ss_pred CEEEeeCCHHHHhh
Confidence 99999999877643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-76 Score=620.01 Aligned_cols=380 Identities=29% Similarity=0.368 Sum_probs=331.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERL-RKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
++|+++||.+++++++.+|++.++..++.++. ++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|++..++
T Consensus 146 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~ 225 (529)
T TIGR02868 146 AAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRE 225 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHH
Confidence 35688999999999888888877766655554 56677778888999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
..+...+..+..........++ .+..++++++|++++..|.+++|.++++..+...+..|+..+...+..++++..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (529)
T TIGR02868 226 LLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAE 305 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666655554443333322 233455667889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCC--CCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 161 RLFDLTKFKSKVIEKPD--AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
|+.++++.+++..+... .....+..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 306 ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 306 RIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred HHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999987654322111 11111223579999999999864 3699999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
|+|++|+|.+||+|++++ .+++|++|+||||+|++|++||+|||.++.+ +.++++++++++.+++++++.++|+|+|
T Consensus 385 ~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 385 LDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP--DATDEELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred CCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC--CCCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 999999999999999999 9999999999999999999999999999864 4678999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccCh
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHL 386 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 386 (426)
|.+|++|.+||||||||++||||++++|++||||||||+||+++++.|.+.+.+..+++|+|+||||+
T Consensus 462 T~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 462 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred chhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988889999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=619.89 Aligned_cols=407 Identities=31% Similarity=0.448 Sum_probs=361.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 014366 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCE 85 (426)
Q Consensus 6 ~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 85 (426)
++++|.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.++.+.++|.+...+..+.
T Consensus 133 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~ 212 (569)
T PRK10789 133 TQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKK 212 (569)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999888899999999999999999999999999999999999999999999999988776666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 86 LLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~ 164 (426)
..+..+............ .+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++.+..+.+|+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ 292 (569)
T PRK10789 213 NMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRA 292 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555544433333322 2335566778999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
+++.+++..... ...+...+.|+++|++|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 293 ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 293 MLAEAPVVKDGS--EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred HHcCCCcccCCC--CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 998665422111 111122457999999999986545799999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
+|.+||+++.+++..++|++++|+||+|.+|++|++||+.++.+ +.++++++++++.+++++++.++|+|++|.+|++
T Consensus 371 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 371 DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred EEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 99999999999999999999999999999999999999999864 3578899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|+++
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~ 528 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIA 528 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
+.|+++++.+++
T Consensus 529 ~~g~~~~l~~~~ 540 (569)
T PRK10789 529 QRGNHDQLAQQS 540 (569)
T ss_pred EecCHHHHHHcC
Confidence 999998776543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-76 Score=673.21 Aligned_cols=408 Identities=25% Similarity=0.378 Sum_probs=342.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHhccHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKIS-KQ-----------------SHLSIASLSAYLNEVLPAILFVKA 64 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~ 64 (426)
+++++++|.+++++++++ +++.+.+.++.+... ++ ..+..++.+..+.|.++|+++||+
T Consensus 961 ~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka 1037 (1466)
T PTZ00265 961 VMSFYFCPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037 (1466)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHH
Confidence 356889998887765433 333444444333211 11 123466788999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 014366 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQ 143 (426)
Q Consensus 65 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~ 143 (426)
|+.|+.+.++|.+..+...+...+.....++...+...+ .+..++++++|++++..|.+++|.+++++.+......++.
T Consensus 1038 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~ 1117 (1466)
T PTZ00265 1038 YGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAG 1117 (1466)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776666555555554444444333 3446777889999999999999999998877666566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccccCCC-CCCC---CCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEE
Q 014366 144 GVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP-DAVS---LDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETV 218 (426)
Q Consensus 144 ~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~---~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~ 218 (426)
.+.+.+..++.+..+++|++++++.+++..... .... .....+.|+|+||+|+|+++ ..++|+|+||+|++|+++
T Consensus 1118 ~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~v 1197 (1466)
T PTZ00265 1118 KLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTT 1197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEE
Confidence 899999999999999999999998765321111 1111 11234679999999999853 247999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhcCCCC------------------------------------------------------Ccc
Q 014366 219 ALIGPSGGGKSTLAKLLLRLYDP------------------------------------------------------LSG 244 (426)
Q Consensus 219 ~ivG~sGsGKSTLl~ll~g~~~p------------------------------------------------------~~G 244 (426)
|||||||||||||+++|+|+|+| ++|
T Consensus 1198 AIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1277 (1466)
T PTZ00265 1198 AIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSG 1277 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 99999999999999999999998 699
Q ss_pred EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
+|++||+|+++++.+++|++|+||||+|.||++||+|||.|+.+ +.++++++++++.+++++|+..||+||||.+|++
T Consensus 1278 ~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~ 1355 (1466)
T PTZ00265 1278 KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355 (1466)
T ss_pred eEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCC
Confidence 99999999999999999999999999999999999999999965 4678999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeC--
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDN-- 400 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~-- 400 (426)
|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|.++. +++|+|+||||+++++.||+|+||++
T Consensus 1356 G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~ 1435 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPD 1435 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999984 58999999999999999999999999
Q ss_pred --CEEE-EeccccccccC
Q 014366 401 --GKLE-ELNRSTLLGSN 415 (426)
Q Consensus 401 --G~i~-e~g~~~~l~~~ 415 (426)
|+++ |+|+|++|.++
T Consensus 1436 ~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1436 RTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred CCCCEEEEecCHHHHHhc
Confidence 9954 89999988763
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-78 Score=592.87 Aligned_cols=410 Identities=31% Similarity=0.463 Sum_probs=362.6
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+....||++++++++++.++..+...+...-.+.++++..+..+-.....|++-+.+|||-||+|+.+.++|++...++.
T Consensus 353 F~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yq 432 (790)
T KOG0056|consen 353 FFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQ 432 (790)
T ss_pred hhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHH
Confidence 34568999999999998888877776666666777777777777778889999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+...-..+....-. ++.++.++.-.+.+|+|..+.+++|.++.|.+|+.++..|++.++..+..+|.....++++
T Consensus 433 k~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnm 512 (790)
T KOG0056|consen 433 KQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENM 512 (790)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHH
Confidence 655554332222222211 1222333333345677778999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++++.++|..+.++..+.....|.|+|+||+|.|.++ +++|+||||++.||+.+|+|||||+||||++++|.++++.+
T Consensus 513 fdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 513 FDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred HHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 99999888877666665555567899999999999876 57999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|+|.+||+|++.....++|++||+||||..||+.||..||.|+.+ ++++|++.++++.++++|-+..+|+||+|.+|
T Consensus 592 sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 592 SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred CceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999999999999999999986 46789999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
|+|-.|||||||||||||+++++|.+++|||+||+||..+|+.|+.+|.++..++|.|+|+||++++-+||.|+|+++|+
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGR 749 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
|+|.|+|++|...+
T Consensus 750 IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 750 IVERGRHEELLKRD 763 (790)
T ss_pred EeecCcHHHHHhcc
Confidence 99999999877663
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-75 Score=618.28 Aligned_cols=411 Identities=30% Similarity=0.442 Sum_probs=361.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||.++.+.++|++..++.
T Consensus 149 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~ 228 (585)
T TIGR01192 149 PTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNL 228 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...+.......+ .+..++++++|++++.+|.+++|.++++..++..+..|+..+...+..++.+..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~r 308 (585)
T TIGR01192 229 LSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLED 308 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555444444333332222 2345666778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.......+...+.|+++||+|+|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|
T Consensus 309 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 309 FFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred HHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC
Confidence 999987654422111111111223569999999999854 3689999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||.++.+++.+++|++++||||++.+|++|++||+.++.+ +.++++++++++.+++++++.++|+|++|.+
T Consensus 388 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 388 TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999764 3568889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|
T Consensus 466 ~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQG 545 (585)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.++.
T Consensus 546 ~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 546 RLIEKGSFQELIQKD 560 (585)
T ss_pred EEEEECCHHHHHHCC
Confidence 999999998876543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-75 Score=616.77 Aligned_cols=411 Identities=38% Similarity=0.576 Sum_probs=361.1
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|++++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.++.+.++|.+..++..
T Consensus 152 ~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 231 (576)
T TIGR02204 152 MMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAY 231 (576)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHH
Confidence 46789999999999989988888888999999999999999999999999999999999999999999999998887666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+..........+...+ .+..++++++|++++..|.+|+|.++++..+..++..|+..+...+..++.+..+.+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri 311 (576)
T TIGR02204 232 EAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL 311 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544433333332222 23345566789999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCC-CCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 163 FDLTKFKSKVIEKPDAVS-LDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.++++.+++......... ..+..+.|+++||+|+|++.. +++|+|+||+++|||+++|+||||||||||+|+|+|+++
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 312 IELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred HHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 999876554221111111 111235699999999998532 569999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|.+||.++++++..++|++++|+||+|++|++|++|||.++.+ +.++++++++++.+++.++++++|+|+||.
T Consensus 392 p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~--~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~ 469 (576)
T TIGR02204 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTY 469 (576)
T ss_pred CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCcHHHHHhCCCCCCce
Confidence 999999999999999999999999999999999999999999999864 346889999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++
T Consensus 470 i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred eCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998778999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|++++.|+++++.++.
T Consensus 550 g~~~~~g~~~~l~~~~ 565 (576)
T TIGR02204 550 GRIVAQGTHAELIAKG 565 (576)
T ss_pred CEEEeeecHHHHHHcC
Confidence 9999999988776553
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=584.27 Aligned_cols=400 Identities=30% Similarity=0.467 Sum_probs=341.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 014366 10 PVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKK 89 (426)
Q Consensus 10 ~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 89 (426)
+..+++++..+..+..+......+-.+..+++..+.......+.|.+.+.++||.||.|+++.++|.....++.+...+.
T Consensus 175 a~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~ 254 (591)
T KOG0057|consen 175 AAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKY 254 (591)
T ss_pred hHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhH
Confidence 44455555554455544444555556677888889999999999999999999999999999999999888777776666
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014366 90 RKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKF 168 (426)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~ 168 (426)
....++....-..++ .....+++.|..-+.++.+|.|.++.+..+..++..|+..++..+..+.++...+...+...+.
T Consensus 255 ~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~ 334 (591)
T KOG0057|consen 255 SSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEV 334 (591)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Confidence 554444433332322 2233444455555778899999999999999999999999999999999998888877655433
Q ss_pred cccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 169 KSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
.....+ .+.+....++.|+|+||+|+|+++ +++|+++||+|++||++||+|+|||||||++|+|.+|++ ++|+|++
T Consensus 335 ~~~i~~--~~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~I 410 (591)
T KOG0057|consen 335 DEDIQE--AALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 (591)
T ss_pred hhhhhh--ccCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEE
Confidence 222211 112233345679999999999875 469999999999999999999999999999999999999 9999999
Q ss_pred cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 249 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
||+++++++++.+|+.|||||||..||++||.+||.||++ ..+++++.++|++++++|.+.++|+||+|.+||+|..|
T Consensus 411 dG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~--sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 411 DGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP--SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred CCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC--CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 9999999999999999999999999999999999999986 46799999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
||||||||+||||+++||||+++|||||+||.+||+.+.+.+.+...++|+|+|.||+++++.||+|+++++|++.|.|+
T Consensus 489 SGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred ccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEecc
Confidence 99999999999999999999999999999999999999999999778899999999999999999999999999999999
Q ss_pred ccccccC
Q 014366 409 STLLGSN 415 (426)
Q Consensus 409 ~~~l~~~ 415 (426)
+++|...
T Consensus 569 h~ell~~ 575 (591)
T KOG0057|consen 569 HSELLAP 575 (591)
T ss_pred HHHHhhh
Confidence 9887763
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=608.88 Aligned_cols=392 Identities=28% Similarity=0.409 Sum_probs=342.4
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 137 ~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 216 (529)
T TIGR02857 137 AAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEY 216 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHH
Confidence 35678999999999999998888888888999888999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+..........++. +..+++++++++.+..|.+|+|.++++.++...+..|+..+...+..++++..+.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 296 (529)
T TIGR02857 217 RERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEA 296 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444443333333222 223333445666677899999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.. ..+ ....+.|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|
T Consensus 297 i~~ll~~~~~~~~~~-~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 297 LFAVLDAPRPLAGKA-PVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred HHHHhCCCcccCCCc-CCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 999997543321111 111 112347999999999987545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++.+++|++++||||+|++|++|++||+.++.+ +.++++++++++.++++++++++|+|+||.+
T Consensus 375 ~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 375 TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred CCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999764 3568899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|
T Consensus 453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=577.11 Aligned_cols=408 Identities=25% Similarity=0.350 Sum_probs=349.0
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 5 MLVISPVLSLISALVIPSMALVIAY-LGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 5 ~~~~s~~l~li~l~~~pl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+.++||++++.+...+.+..++.++ +.+..++..++..+.++.+.+.+.|.+.|..+++.||+++.+.+.+.+....+.
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~ 232 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWL 232 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4578999998877766666655555 455567778888899999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALF-ILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVG-KAYNEFKQGEPAIER 161 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~-~~~~~~~~~~~a~~r 161 (426)
+...+..++..+...+..++....++ .+++.+..+..|..+......++......+.++..+. ..+..+.+...|+.|
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~R 312 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARR 312 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHH
Confidence 66666666665555544444332222 3333444455677776555555555566777777777 788899999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++.+.+++...+ +.. ....+..++++||||+|+++++++|+|+||++++||++||+|+||||||||+++|.|.|+|
T Consensus 313 l~~i~~q~~e~~~~-~~~-~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 313 LNDILDQKPEVTFP-DEQ-TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred HhhhccCCcccCCC-ccc-cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 99999888775443 111 1112227999999999998877899999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.++|.++..++.+.+|+.+++++|.+++|++|+|||+.++++ +.++++++++++.++++++++..|+||+|++
T Consensus 391 ~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 391 QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred CCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 99999999999999999999999999999999999999999999886 4789999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
||.|..||||||||++|||+|++|+|++||||||.|||+.||+++++.+.+..++||+|+||||+..++.||||+||++|
T Consensus 469 ge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~G 548 (573)
T COG4987 469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548 (573)
T ss_pred ccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+++|+|+|.++..++
T Consensus 549 kiie~G~~~~Ll~~~ 563 (573)
T COG4987 549 KIIEEGTHAELLANN 563 (573)
T ss_pred eeeecCCHHhhhccc
Confidence 999999998776654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=657.74 Aligned_cols=408 Identities=24% Similarity=0.341 Sum_probs=345.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++.+|++++++++++++++++.+++.+..++..+...+..+.+.+.+.|+++|+++||+||.++++.+++.+..+...
T Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35667787777666666666666666777777777778888999999999999999999999999998888877766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVS-GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+..+.......+......++ +.+++++++.+.+. .|.++.|.+.+++.+...+..|+..+...+..++.+..+++|+
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi 1256 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECV--GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333222222222222221 12233334444443 5789999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCC-CCC--CCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 163 FDLTKFKSKVIEK-PDA--VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 163 ~~~l~~~~~~~~~-~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++.+++.... ... ....+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|.|+|
T Consensus 1257 ~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred HHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 9999877654211 111 1111345789999999999865457999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++++.+++|++|++|||||.+|++||||||.... +.++++++++++.+++++++.++|+||||
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt 1413 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS---QYSDEEVWWALELAHLKTFVSALPDKLDH 1413 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCc
Confidence 999999999999999999999999999999999999999999997432 46789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||+
T Consensus 1414 ~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld 1493 (1522)
T TIGR00957 1414 ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLD 1493 (1522)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+|+|.|+|++|.++.
T Consensus 1494 ~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1494 KGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999999887663
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-74 Score=554.76 Aligned_cols=410 Identities=32% Similarity=0.461 Sum_probs=363.2
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+...++|+.++++++++.++.++.......-....++..++.++.++...|++-+.+++|.||.|+.+..+|....+.+.
T Consensus 77 ~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~ 156 (497)
T COG5265 77 LWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYE 156 (497)
T ss_pred HHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHH
Confidence 44568999999999998888887766666666677777888899999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+...-..+....-..++ .+.......+...+..|.+|+|.++....++.+...|+..++..+.++.++...+++.
T Consensus 157 ~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~m 236 (497)
T COG5265 157 KAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKM 236 (497)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHH
Confidence 666555433333332222222 2334445567778889999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCC-CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+++++.+.+..+.+...+.. ...+.+.|++|+|.|.+. +++|+++||++++|+++|+|||||+||||++++|.+||++
T Consensus 237 fdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 237 FDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred HHhhccchhhccCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 99998887766555444443 335679999999999875 5799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|.|.+||+|+.+.....+|+.||.||||..||+.|+..|+.|+++ ..+++++..+++.+++++++..+|+||+|.|
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~--~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc--cccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999999999999999999999999999999999999999986 5678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
||+|-.||||||||+||||+++++|+|++|||+||+||..+|+.|+..|++..+++|.++|+||++++..||.|+||++|
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+|+|.|+|++|..++
T Consensus 474 ~i~erg~h~~ll~~~ 488 (497)
T COG5265 474 RIVERGTHEELLAAG 488 (497)
T ss_pred EEEecCcHHHHHHcC
Confidence 999999998877663
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-72 Score=642.32 Aligned_cols=410 Identities=21% Similarity=0.266 Sum_probs=333.5
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|.+.++++.+..++..+..++.+..++..+......+.+.+.+.|+++|+++||+||.++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34556665444333333333344455666667777777888899999999999999999999999999999988777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIY-FGALFILCGG--SLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g--~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
+..+.......+......++. +..+++.+++ ..+...+.+++|.+..++++...+..|+..+...+..++.+..+++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443332222222222211 1111222222 2233345678888888888888999999999999999999999999
Q ss_pred HHHHhhcCccccc-CC-------------------------C-CCC---CCCCCCccEEEEeEEEEeCCCCCCcceeeeE
Q 014366 161 RLFDLTKFKSKVI-EK-------------------------P-DAV---SLDHINGDVKFCNISFKYADNMPLVLDQLNL 210 (426)
Q Consensus 161 ri~~~l~~~~~~~-~~-------------------------~-~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl 210 (426)
|+.++++..+++. .. . ... +..+..+.|+|+||+|+|+++.+++|+|+||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 9999986332211 00 0 000 0111246799999999998765569999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~ 290 (426)
+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||++||||||..+.
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--- 1408 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--- 1408 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC-CCEEEeeccCCCCCHHHHHHHHHH
Q 014366 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN-SSVLILDEATSALDSRSELLVRQA 369 (426)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~-p~illlDEpts~LD~~~~~~i~~~ 369 (426)
+.++++++++++.+++++++.++|+||||.+|++|.+||||||||+||||||+++ |+|||||||||+||+++++.|++.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 370 VDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 370 l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|.+++
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~ 1535 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNR 1535 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99988889999999999999999999999999999999999887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-72 Score=643.35 Aligned_cols=381 Identities=25% Similarity=0.370 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 014366 29 YLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ--LIYFG 106 (426)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 106 (426)
++.+..++..+......+.+.+++.|+++|+++||+|+.++++.+++.+..+.. .+..........+.. ...+.
T Consensus 1072 ~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~wl~~~l~~~~ 1147 (1622)
T PLN03130 1072 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLVNMSSNRWLAIRLETLG 1147 (1622)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677788999999999999999999999887766665544332 222222111111111 11112
Q ss_pred HHHHHHHHHHHHhCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCC---C
Q 014366 107 ALFILCGGSLLVSGGS-FD-----GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP---D 177 (426)
Q Consensus 107 ~~~~~~~g~~lv~~g~-l~-----~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~ 177 (426)
.+++++.+.+.+..+. .. .+.+..++.+...+..++..+...+..++.+..+++|+.++++.++|..... .
T Consensus 1148 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~ 1227 (1622)
T PLN03130 1148 GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNR 1227 (1622)
T ss_pred HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCC
Confidence 2233333444444332 11 2233333445556667777777888888999999999999998876642211 1
Q ss_pred CCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 178 AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 178 ~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
+.+..+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++
T Consensus 1228 ~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1228 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG 1307 (1622)
T ss_pred CCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC
Confidence 11112335689999999999765457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.+++|++|++|||||.+|++||||||.++. +.++++++++++.++++++++++|+||||.+|++|.+||||||||+|
T Consensus 1308 l~~LR~~IsiVpQdp~LF~GTIreNLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSGTVRFNLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred HHHHHhccEEECCCCccccccHHHHhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999998865 35789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|++|.+++
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~ 1463 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNE 1463 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 9999999999999999999999999999999999988899999999999999999999999999999999999887664
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-71 Score=638.96 Aligned_cols=381 Identities=24% Similarity=0.374 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 32 ERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIL 111 (426)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (426)
+..++..+......+.+.+.+.|+++|+++||+||.++++.+++.+..+...+..........+...... .++.++++
T Consensus 1072 ~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~--~~~~~~~~ 1149 (1495)
T PLN03232 1072 STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLE--TLGGVMIW 1149 (1495)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4445566667788899999999999999999999999877776665544332222111111111111111 11222233
Q ss_pred HHHHHHHh-CCCC----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CC--CCCCC
Q 014366 112 CGGSLLVS-GGSF----DGCS-LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PD--AVSLD 182 (426)
Q Consensus 112 ~~g~~lv~-~g~l----~~g~-l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~--~~~~~ 182 (426)
+.+.+.+. .+.+ ..+. +..++.+...+..|+..+...+..++.+..+++|+.++++.++|.... .. +.+..
T Consensus 1150 ~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~ 1229 (1495)
T PLN03232 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW 1229 (1495)
T ss_pred HHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCC
Confidence 33444443 2332 1122 233556677788899999999999999999999999999877654321 11 11111
Q ss_pred CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 014366 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 183 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
+..+.|+++||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 1230 p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred CCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 33467999999999975545799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++|||||.+|++||||||.++. +.++++++++++.++++++++++|+|+||.+|++|.+||||||||+||||||
T Consensus 1310 ~~i~iVpQdp~LF~gTIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSGTVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred hhcEEECCCCeeeCccHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998764 4678999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+++|.|+|++|.++++
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 999999999999999999999999999999888899999999999999999999999999999999998887654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-71 Score=631.65 Aligned_cols=398 Identities=30% Similarity=0.434 Sum_probs=343.1
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++|++||.|++++++++|+++++..++.+++++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+.....
T Consensus 190 i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~ 269 (1466)
T PTZ00265 190 IWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269 (1466)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999888888888899999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGG--------SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFK 153 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g--------~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~ 153 (426)
.+...+...+..+......+ .++..++++|+|++++..| .+++|.+++++.+....+.++..+...+..++
T Consensus 270 ~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~ 349 (1466)
T PTZ00265 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYM 349 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555554333333 2445677788999999875 57888888877766655566667777889999
Q ss_pred HHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHH
Q 014366 154 QGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 154 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl 232 (426)
.+..+++|++++++.+++..........+ ....|+++||+|+|++.. .++|+|+||+|++||++||+||||||||||+
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl 428 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999998766532211111111 124799999999998542 3699999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEE-cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC----------------------
Q 014366 233 KLLLRLYDPLSGCILV-DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM---------------------- 289 (426)
Q Consensus 233 ~ll~g~~~p~~G~I~~-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~---------------------- 289 (426)
++|+|+|+|++|+|++ ||.++.+++..++|++|+||+|+|.+|++||+|||.++...
T Consensus 429 ~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1466)
T PTZ00265 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENK 508 (1466)
T ss_pred HHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccc
Confidence 9999999999999999 57999999999999999999999999999999999986410
Q ss_pred ---------------------------------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 290 ---------------------------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 290 ---------------------------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
.+.++++++++++.+++++++..+|+||||.+|++|.+||||||||+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi 588 (1466)
T PTZ00265 509 NKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588 (1466)
T ss_pred cccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH
Confidence 12456789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
+|||||+++|+|||||||||+||+.+++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 589 aIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999985 478999999999999999999999986
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-71 Score=547.17 Aligned_cols=407 Identities=27% Similarity=0.378 Sum_probs=362.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++|.++|+++++.++...+++.+.++-....++..++..+...+.+....-+.++.++|++.|......++|.+.+..++
T Consensus 153 v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L 232 (580)
T COG4618 153 VIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYL 232 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 56889999999999888887777776677777888888888999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
....+..-....+....-.+ .+....++.+|+|+++.|++|.|.+++-..++.+...|+......|.++..++.+++|+
T Consensus 233 ~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl 312 (580)
T COG4618 233 SAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRL 312 (580)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544444444433322 34467788899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.+++...++..+ .-+.+...+.+.++++++.=|+.++++++++||++++||.+||+||||||||||.|+|.|.++|.
T Consensus 313 ~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~ 389 (580)
T COG4618 313 NELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT 389 (580)
T ss_pred HHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC
Confidence 999976554322 23344556889999999987777779999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|.|++||-+++.++.+++-++|||+||+..||+|||.|||+-..+ +.+.+.+.++++.++.+|.+-++|+||||.+|
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 9999999999999999999999999999999999999999964332 46788899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
+.|..|||||||||++||||+.||.+++||||.|+||.+.|+.+.+.|.+.+ ++.|+|+||||++.+..+|+|++|++|
T Consensus 468 ~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G 547 (580)
T COG4618 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDG 547 (580)
T ss_pred CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCC
Confidence 9999999999999999999999999999999999999999999999999886 578999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
++...|+.++...+
T Consensus 548 ~~~~FG~r~eVLa~ 561 (580)
T COG4618 548 RIAAFGPREEVLAK 561 (580)
T ss_pred hHHhcCCHHHHHHH
Confidence 99999998776543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-69 Score=616.74 Aligned_cols=406 Identities=17% Similarity=0.289 Sum_probs=325.9
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|+++++++.++.+++++..++.+..++..+......+.+.+++.|+++|+.+||+||.++.+.++|.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45677787765544444444444455566667777777888899999999999999999999999999999988776443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLF 163 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~ 163 (426)
+..+.......+......++... +++.++.+.+....++.|.+..++++...+..++..+...+..+..+..+++|+.
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~--~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1176 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVF--FFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222211111211111111111 0111111111112344555555666777788899999999999999999999999
Q ss_pred HhhcCcccccCCCCC-----------------CCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCC
Q 014366 164 DLTKFKSKVIEKPDA-----------------VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGG 226 (426)
Q Consensus 164 ~~l~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGs 226 (426)
++++.+++....... .+..+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+|||
T Consensus 1177 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGs 1256 (1490)
T TIGR01271 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGS 1256 (1490)
T ss_pred HHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCC
Confidence 999876653211100 001123468999999999986556899999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhch
Q 014366 227 GKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306 (426)
Q Consensus 227 GKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l 306 (426)
|||||+++|+|+++ ++|+|++||.|+++++..++|++++||||+|.+|++||||||.... ..++++++++++.+++
T Consensus 1257 GKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~---~~tdeei~~aL~~~~L 1332 (1490)
T TIGR01271 1257 GKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE---QWSDEEIWKVAEEVGL 1332 (1490)
T ss_pred CHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc---CCCHHHHHHHHHHCCC
Confidence 99999999999997 7999999999999999999999999999999999999999996543 4578999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccCh
Q 014366 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHL 386 (426)
Q Consensus 307 ~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 386 (426)
.+++.++|+|+||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|||+||||+
T Consensus 1333 ~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred HHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 387 ETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 387 ~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++..||||+||++|+|+|.|+|++|.++
T Consensus 1413 ~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1413 EALLECQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999999999887754
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-68 Score=561.78 Aligned_cols=391 Identities=19% Similarity=0.215 Sum_probs=320.6
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchH--HHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEM--CESARFRRLAH 80 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~ 80 (426)
++|+++||.+++++++++|+.+++..+..++.++...+.++..+++++.+.|.+.|++++|+|+.++ ...++|.+..+
T Consensus 145 ~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~ 224 (555)
T TIGR01194 145 AYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHH
Confidence 4678999999999998889988888888888888888889999999999999999999999999953 45667776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 81 SDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
+..+...+..............+ .....+.++++++ .|.+++|.+++++++...+..|+..++..+..++++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~ 301 (555)
T TIGR01194 225 NIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433322222111111111 1111122223332 2789999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccccC---CCCCC-----CCCCCCccEEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcH
Q 014366 160 ERLFDLTKFKSKVIE---KPDAV-----SLDHINGDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGK 228 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~---~~~~~-----~~~~~~~~i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGK 228 (426)
+|+.++++.+++... .+... +.....+.|+++||+|+|++. .+++|+|+||++++||+++|+|||||||
T Consensus 302 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGK 381 (555)
T TIGR01194 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGK 381 (555)
T ss_pred HHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCH
Confidence 999999763221100 01000 111123579999999999753 2359999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHH
Q 014366 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308 (426)
Q Consensus 229 STLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (426)
|||+++|+|+++|++|+|.+||.++.+++..++|++++||+|++.+|++|+++|. . .+.++++++++++.+++++
T Consensus 382 STl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~--~~~~~~~~~~~~~~~~l~~ 456 (555)
T TIGR01194 382 STLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---G--EHASLDNAQQYLQRLEIAD 456 (555)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---c--cchhHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999999999999999999999999995 1 2356788999999999999
Q ss_pred HHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHH-HH-cCCceEEEeccCh
Q 014366 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD-RL-LGHHTVLVIAHHL 386 (426)
Q Consensus 309 ~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~-~~-~~~~tvi~itH~~ 386 (426)
+++.+|+|+||. .+||||||||++||||++++|+++|||||||+||+++++.+.+.+. .+ .+++|+|+||||+
T Consensus 457 ~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 457 KVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred hhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 999999999994 7999999999999999999999999999999999999999998764 34 3579999999999
Q ss_pred HHHHhcCEEEEEeCCEEEEe
Q 014366 387 ETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 387 ~~~~~~D~i~vl~~G~i~e~ 406 (426)
+.+..||+|++|++|+++|.
T Consensus 532 ~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 532 QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=590.16 Aligned_cols=413 Identities=26% Similarity=0.413 Sum_probs=351.6
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++.+..|++.++++.+..++..+..++.+-.++..+-...+++.+.+++.|++.|+.|||+|+.++++.+++.+..+...
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 45567788777777777777777777888888888888999999999999999999999999999999999988776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVS--GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~--~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
+..+-.....-++..-..+ ++.++++..+...+. .+..+.|.+-..++|...+...++.+.....++.....|+||
T Consensus 1032 ~~~f~~~~a~RWla~Rle~--ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVER 1109 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLEL--LGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVER 1109 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH
Confidence 4433221111111111111 222222222222222 222667777777888889999999999999999999999999
Q ss_pred HHHhhcCcccccC---CCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 162 LFDLTKFKSKVIE---KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 162 i~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.++.+.|+|.+. ...+++..+..|.|+|+|++.+|.++.++||+||||+|+|||+|||||++|||||||+++|.|+
T Consensus 1110 v~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1110 VLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred HHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 9999998776211 1112334566789999999999988778899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
.+|.+|+|.|||.|+.++...++|++++++||||.||+||+|.|+ +|....+|++++++++.+++.+++.++|.|+|
T Consensus 1190 ~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL---DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1190 VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL---DPFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc---CcccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 999999999999999999999999999999999999999999999 55566789999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
+.+.|+|.|+|-||||.+||||||+++++||+|||+|+++|++|...|++.|++..+++|||.|+||++++.+||||+||
T Consensus 1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVL 1346 (1381)
T ss_pred ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEeccccccccCcchhhh
Q 014366 399 DNGKLEELNRSTLLGSNHDSLVS 421 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~~~~~l~~ 421 (426)
|+|+++|.|+|..|.+++++++.
T Consensus 1347 d~G~v~EfdsP~~Ll~~~~S~f~ 1369 (1381)
T KOG0054|consen 1347 DAGRVVEFDSPAELLSDKDSLFS 1369 (1381)
T ss_pred eCCeEeecCChHHHHhCCcchHH
Confidence 99999999999999988777764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=594.77 Aligned_cols=372 Identities=22% Similarity=0.318 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYF 105 (426)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (426)
+..++.++..+..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+......+....... ..
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~-~~ 534 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS-IP 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34567788899999999999999999999999999999999999999999887766555444443333222111111 11
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCC
Q 014366 106 GALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHIN 185 (426)
Q Consensus 106 ~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 185 (426)
..+.++++|++++..|.+++|.++++++++..+..|+..++..+..+.++..+++|+.++++.+++...... ......
T Consensus 535 ~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~ 612 (1495)
T PLN03232 535 VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGA 612 (1495)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCC
Confidence 123345678888889999999999999999999999999999999999999999999999976543211111 111123
Q ss_pred ccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
+.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 469999999999753 35799999999999999999999999999999999999999998763 35778
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||+|+|++|++||+|||.++.+ .++++++++++.+++.++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 57889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHH-HHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|+|+|||||||+||+++++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 9999999999999999999988765 5555578999999999999999999999999999999998877643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=589.45 Aligned_cols=375 Identities=24% Similarity=0.337 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 22 SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ 101 (426)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (426)
+++++..++.+++++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+......+...+..
T Consensus 452 l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1622)
T PLN03130 452 LMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILN 531 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556778888889999999999999999999999999999999999999988766554443333322222211111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC
Q 014366 102 LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181 (426)
Q Consensus 102 ~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 181 (426)
.. ...+.++++|++++..|.+++|.+++++++...+..|+..++..+..+.++.++++|+.++++.++..... .. ..
T Consensus 532 ~~-~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~ 608 (1622)
T PLN03130 532 SI-PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-PL 608 (1622)
T ss_pred HH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC-cc
Confidence 11 11334556788888899999999999999999999999999999999999999999999999765432111 11 11
Q ss_pred CCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHH
Q 014366 182 DHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLD 259 (426)
Q Consensus 182 ~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-G~I~~~g~~i~~~~~~ 259 (426)
....+.|+++|++|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+
T Consensus 609 ~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------- 677 (1622)
T PLN03130 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------- 677 (1622)
T ss_pred cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------
Confidence 1113469999999999753 3569999999999999999999999999999999999999999 89974
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
|++|+||+|+|++|++||+|||.||.+ .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||
T Consensus 678 --~~~Iayv~Q~p~LfngTIreNI~fg~~---~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA 752 (1622)
T PLN03130 678 --RGTVAYVPQVSWIFNATVRDNILFGSP---FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752 (1622)
T ss_pred --cCeEEEEcCccccCCCCHHHHHhCCCc---ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence 567999999999999999999999875 468899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHH-HHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQ-AVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||++++|+|+|||||||+||+++++.+.+ .++...+++|+|+|||+++.+..||+|++|++|+++++|+++++.++
T Consensus 753 RAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 99999999999999999999999988764 56666678999999999999999999999999999999999877643
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=526.67 Aligned_cols=386 Identities=24% Similarity=0.273 Sum_probs=298.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCch---HHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAE---MCESARFRRLA 79 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 79 (426)
++|+++||.+++++++++|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 4578899999999999999998888889999999999999999999999999999999996 4443 34566777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 80 HSDLCELLKKRKMKALIPQTVQLIYFG-ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158 (426)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a 158 (426)
++..+...+.................. ..+.++++... +..+.+.+..+..+...+..|+..+...+..++.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443333332222211111111111 11111112111 11233444444444455678999999999999999999
Q ss_pred HHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 159 IERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 159 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.+|+.++++.+++.... ..... +..+.|+++||+|+|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 296 ~~ri~~l~~~~~~~~~~-~~~~~-~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 296 FNKLNKLALAPYKAEFP-RPQAF-PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred HHHHHHHhccccccccc-ccccc-CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999987654322111 11111 113479999999999854 4699999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
|+|++|+|.+||+++++.+..++|++++||+|++.+|++|++|| +. ..++++++++++.+++.+++.. |+|.
T Consensus 373 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~---~~~~~~~~~~~~~~~l~~~~~~-~~~~- 444 (547)
T PRK10522 373 YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK---PANPALVEKWLERLKMAHKLEL-EDGR- 444 (547)
T ss_pred CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC---chHHHHHHHHHHHcCCchhhhc-cccC-
Confidence 99999999999999999999999999999999999999999998 21 3456677777777777665542 3332
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~ 396 (426)
.+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+.+.. .++|+|+||||++.++.||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1478999999999999999999999999999999999999999999987653 4789999999999999999999
Q ss_pred EEeCCEEEEec
Q 014366 397 LLDNGKLEELN 407 (426)
Q Consensus 397 vl~~G~i~e~g 407 (426)
+|++|+++|..
T Consensus 521 ~l~~G~i~e~~ 531 (547)
T PRK10522 521 EMRNGQLSELT 531 (547)
T ss_pred EEECCEEEEec
Confidence 99999999874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=554.64 Aligned_cols=385 Identities=20% Similarity=0.269 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 13 SLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKM 92 (426)
Q Consensus 13 ~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 92 (426)
+++.++++++++++..++.+++++.+++.++..++..+.+.|.++|+++||++++|+.+.+++++..++..+...+....
T Consensus 460 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~ 539 (1522)
T TIGR00957 460 VLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYL 539 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777889999999999999999999999999999999999999999999988776655443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014366 93 KALIPQTVQLIYFGALFILCGGSLLVS--GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKS 170 (426)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~lv~--~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 170 (426)
..+.. +........+.++.++.+.+. .+.++.+..++.+.++..+..|+..+...+..+.++..+.+|+.++++.++
T Consensus 540 ~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~ 618 (1522)
T TIGR00957 540 HAVGT-FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE 618 (1522)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 22211 111111111222334555555 356888888888888888999999999999999999999999999997654
Q ss_pred cccCCCCCCCCC-CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 014366 171 KVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (426)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~ 249 (426)
+........... ...+.|+++|++|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 619 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 698 (1522)
T TIGR00957 619 LEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK 698 (1522)
T ss_pred cccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEEC
Confidence 321110001111 1123699999999998644579999999999999999999999999999999999999999999998
Q ss_pred CEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 250 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
| +++||||+|++|++||+|||.++.+ .++++.+++++.+++.++++.+|+|++|.+|++|.+||
T Consensus 699 g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS 762 (1522)
T TIGR00957 699 G-------------SVAYVPQQAWIQNDSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762 (1522)
T ss_pred C-------------EEEEEcCCccccCCcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence 7 4999999999999999999999864 35677888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH---HcCCceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR---LLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~---~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
||||||++||||++++|+++|||||||+||+.+++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 9999999999999999999999999999999999999999864 3457899999999999999999999999999999
Q ss_pred cccccccc
Q 014366 407 NRSTLLGS 414 (426)
Q Consensus 407 g~~~~l~~ 414 (426)
|+++++.+
T Consensus 843 g~~~~l~~ 850 (1522)
T TIGR00957 843 GSYQELLQ 850 (1522)
T ss_pred CCHHHHHh
Confidence 99877754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=527.77 Aligned_cols=386 Identities=24% Similarity=0.324 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 13 SLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKM 92 (426)
Q Consensus 13 ~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 92 (426)
+++.++++.+++.+..+++++..+.+.+.++..++....++|.++||++||.|++|+.+.++.++..++..+...+....
T Consensus 344 a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~ 423 (1381)
T KOG0054|consen 344 ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777788999999999999999999999999999999999999999999999988877666554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 014366 93 KALIPQTVQLIYFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK 171 (426)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 171 (426)
.++.......... .+.++.++++. ...+.++....++.++++..+..|+..++..+..+.++.++.+|+.+++..++.
T Consensus 424 ~~~~~~~~~~~p~-lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 424 SALNSFLNFFSPV-LVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4433322221111 11222233333 446678887888888899999999999999999999999999999999976543
Q ss_pred ccCCCCCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 172 VIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
........+..+....++++|.+|++++. ..+.|+||||+|++|+.+||+||.|||||+|+.+|+|..+..+|++.++|
T Consensus 503 ~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 503 DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 22221111222334569999999999763 34599999999999999999999999999999999999999999999988
Q ss_pred EeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 251 HDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 251 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
. ++||||+||+|++||||||.||.+ .++++.+++++.|++.+.++.+|.|..|.+||+|.+|||
T Consensus 583 s-------------iaYv~Q~pWI~ngTvreNILFG~~---~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 583 S-------------VAYVPQQPWIQNGTVRENILFGSP---YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred e-------------EEEeccccHhhCCcHHHhhhcCcc---ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 4 999999999999999999999975 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHH-HHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ-AVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
||||||+||||+++|+||++||+|.|++|.++.+.+.+ .++.+.++||+|+|||+++.++.||+|++|++|+|++.|++
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCH
Confidence 99999999999999999999999999999997777665 46556678999999999999999999999999999999999
Q ss_pred cccccC
Q 014366 410 TLLGSN 415 (426)
Q Consensus 410 ~~l~~~ 415 (426)
+++.+.
T Consensus 727 ~el~~~ 732 (1381)
T KOG0054|consen 727 EELLKS 732 (1381)
T ss_pred HHHHhc
Confidence 888754
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=511.42 Aligned_cols=380 Identities=16% Similarity=0.188 Sum_probs=315.0
Q ss_pred eee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 5 MLV-ISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 5 ~~~-~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
|+. ++|.+++++++.+|+..++.+++.+++.+..++.++..+++.+.+.|.++|+++||+|+.++.+.++|++..++..
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444 8899999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-hC----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYF---GALFILCGGSLLV-SG----GSFDGCSLVS-FITS---LVFMIEPIQGVGKAYNE 151 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~lv-~~----g~l~~g~l~~-~~~~---~~~~~~p~~~l~~~~~~ 151 (426)
+...+..+.......+..++.. ..+.++++|...+ .. |.+|.|.+++ |..+ +..++.|+..++..+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766665554444433321 2222333344233 22 6899888776 5544 55668999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccCC------CCC-----------------CCCCCCCccEEEEeEEEEeCCCCCCcceee
Q 014366 152 FKQGEPAIERLFDLTKFKSKVIEK------PDA-----------------VSLDHINGDVKFCNISFKYADNMPLVLDQL 208 (426)
Q Consensus 152 ~~~~~~a~~ri~~~l~~~~~~~~~------~~~-----------------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i 208 (426)
++++.++.+|+.++++.+++.... ... .......+.|+++||+|+|+++ +++|+|+
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~i 471 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-Ceeeecc
Confidence 999999999999999754332100 000 0011123469999999999754 3699999
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~ 288 (426)
||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|.+|++|++||+.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999998763 567999999999999999999998642
Q ss_pred C-----CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHH
Q 014366 289 M-----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363 (426)
Q Consensus 289 ~-----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~ 363 (426)
. .+.++++++++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1 22456788899999999999988 889999876 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 364 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+.+.+.+++. ++|+|+||||++.++.||++++|+.
T Consensus 619 ~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 619 GYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999874 7899999999999999999999973
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=533.14 Aligned_cols=388 Identities=19% Similarity=0.263 Sum_probs=321.8
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHH
Q 014366 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLC 84 (426)
Q Consensus 5 ~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 84 (426)
++++.++.+++.++++++++++..++++++.+.+++.+...++..+.+.|.++|+++||++++|+.+.+++++..++..+
T Consensus 216 L~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~ 295 (1490)
T TIGR01271 216 IWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELK 295 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33455667778888888888888899999999999999999999999999999999999999999999999888766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 014366 85 ELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPI-QGVGKAYNEFKQGEPAIERLF 163 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~-~~l~~~~~~~~~~~~a~~ri~ 163 (426)
...+......+... ........+.++.++.+.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.
T Consensus 296 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~ 373 (1490)
T TIGR01271 296 LTRKIAYLRYFYSS-AFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQ 373 (1490)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433322211 1111122233444556665544 67888888888888887887 479999999999999999999
Q ss_pred HhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC--------------------------------CCCcceeeeEE
Q 014366 164 DLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN--------------------------------MPLVLDQLNLH 211 (426)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--------------------------------~~~~l~~isl~ 211 (426)
+++..++...... ......++++|++|.|+.. .+++|+|+||+
T Consensus 374 ~fL~~~e~~~~~~-----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~ 448 (1490)
T TIGR01271 374 DFLCKEEYKTLEY-----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFK 448 (1490)
T ss_pred HHhcCcccccccc-----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEE
Confidence 9997654321110 0112358899999988521 13589999999
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~ 291 (426)
|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|+|++|++||+|||.|+.+
T Consensus 449 i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~--- 512 (1490)
T TIGR01271 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS--- 512 (1490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc---
Confidence 999999999999999999999999999999999999988 3999999999999999999999853
Q ss_pred CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH-H
Q 014366 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-V 370 (426)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~-l 370 (426)
.+.++..++++.+++.++++.+|.|++|.+|++|.+|||||||||+||||++++|+++|||||||+||+.+++.+.+. +
T Consensus 513 ~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l 592 (1490)
T TIGR01271 513 YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592 (1490)
T ss_pred cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 345667788888999999999999999999999999999999999999999999999999999999999999999975 6
Q ss_pred HHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 371 DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 371 ~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 593 ~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 593 CKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 666678999999999999989999999999999999998877643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=424.74 Aligned_cols=218 Identities=36% Similarity=0.502 Sum_probs=193.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-CCHHHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~-~~~~~~r~~i 265 (426)
.|+++||+++|++. .+|+|||++|++||+++|+||||||||||++||.||.+|++|+|.++|.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999864 59999999999999999999999999999999999999999999999987743 3567889999
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
|+|||+..||+. |+.||+.++... .+.+ .+...+.++++++.+..+..| .+||||||||||||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999975 999999876321 1222 233456677788888777766 69999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||+.+|+++|+|||||+|||+...++++.++++. ++.|.|+|||.+.+++ .||||++|++|+++|+|+|++++.+++
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999986 4789999999999997 699999999999999999999998764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=519.33 Aligned_cols=394 Identities=20% Similarity=0.237 Sum_probs=319.6
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHH
Q 014366 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLC 84 (426)
Q Consensus 5 ~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 84 (426)
|+.+-++.+++.++++++++++..++.++..+.+++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+
T Consensus 381 L~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~ 460 (1560)
T PTZ00243 381 LSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELR 460 (1560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777778888889999999999999999999999999999999999999999999999988776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 85 ELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~ 164 (426)
...+......+...+..... ..+.++.++.+.+..+.++++.+++++.++..+..|+..++..+..+.++.++++||.+
T Consensus 461 ~l~~~~~~~~~~~~~~~~~p-~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~ 539 (1560)
T PTZ00243 461 YLRDVQLARVATSFVNNATP-TLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIST 539 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433333222221111 12222345677788899999999999999999999999999999999999999999999
Q ss_pred hhcCccccc----C--C---------C--C------C--------CC---------------------------CCCCCc
Q 014366 165 LTKFKSKVI----E--K---------P--D------A--------VS---------------------------LDHING 186 (426)
Q Consensus 165 ~l~~~~~~~----~--~---------~--~------~--------~~---------------------------~~~~~~ 186 (426)
+++.++... + . . . . .. .....+
T Consensus 540 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1560)
T PTZ00243 540 FLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSP 619 (1560)
T ss_pred HHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 997543100 0 0 0 0 0 00 000112
Q ss_pred cEEEEeEEEEeCC--------------------------------------CCCCcceeeeEEEeCCCEEEEECCCCCcH
Q 014366 187 DVKFCNISFKYAD--------------------------------------NMPLVLDQLNLHIRAGETVALIGPSGGGK 228 (426)
Q Consensus 187 ~i~~~~v~~~y~~--------------------------------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGK 228 (426)
.+.++|++++++. +.+++|+|+||+|++||+++|+|||||||
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGK 699 (1560)
T PTZ00243 620 SVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGK 699 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcH
Confidence 4667777665321 12358999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHH
Q 014366 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308 (426)
Q Consensus 229 STLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (426)
|||+++|+|+++|++|+|.++ ++|+|+||+|++|++|++|||.++.+ .+.+++.++++.+++++
T Consensus 700 STLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~---~~~~~~~~~~~~~~l~~ 763 (1560)
T PTZ00243 700 STLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE---EDAARLADAVRVSQLEA 763 (1560)
T ss_pred HHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh---hhHHHHHHHHHHhhhHH
Confidence 999999999999999999862 46999999999999999999998753 34566788889899999
Q ss_pred HHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH-HHHHcCCceEEEeccChH
Q 014366 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 309 ~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~~~ 387 (426)
+++.+|+|++|.+|++|.+|||||||||+||||++.+|+++|||||||+||+.+.+.+.+. +....+++|+|++||+++
T Consensus 764 ~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~ 843 (1560)
T PTZ00243 764 DLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH 843 (1560)
T ss_pred HHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 9999999999999999999999999999999999999999999999999999998888764 333445789999999999
Q ss_pred HHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 388 TVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 388 ~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+..||+|++|++|++++.|+++++.++
T Consensus 844 ~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 844 VVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999998876543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-57 Score=424.95 Aligned_cols=219 Identities=34% Similarity=0.510 Sum_probs=193.6
Q ss_pred EEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HH
Q 014366 188 VKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL 261 (426)
Q Consensus 188 i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~ 261 (426)
|++++|++.|+.+ ...+|+||||+|++||++||+|+||||||||++|+.++.+|++|+|.+||+++..++.. ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999862 24699999999999999999999999999999999999999999999999999887755 45
Q ss_pred hcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
|++||++||++.|++ .||+||++|+....+.+. +++.+.++.+++.++.+..| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 788999999999996 699999999765544443 34455666666666665554 79999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|+|||.|||||+|||++.+.|++.|+++.+ +-||++|||.++.++ .||||.||++|+++|+|+..+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998853 679999999999997 79999999999999999999888
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
.+++
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 8864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-57 Score=412.92 Aligned_cols=218 Identities=34% Similarity=0.577 Sum_probs=195.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+|+||||+|.+ +.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 789999999985 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCCHH----HHHHHHHHhchH--HHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~--~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|-|...||+. ||.|||.+-....+++.+ ++.+.++.++++ +|.++.| .+|||||+|||.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999975 999999875444445544 445566666664 4666655 799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||+.+|+++++|||+++|||.++..+++.+.++.+ ++|+|+||||++++ +.+|||.+|++|++++.++|+++..++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988754 68999999999876 6899999999999999999999988874
Q ss_pred h
Q 014366 418 S 418 (426)
Q Consensus 418 ~ 418 (426)
.
T Consensus 229 n 229 (309)
T COG1125 229 N 229 (309)
T ss_pred H
Confidence 3
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=423.80 Aligned_cols=227 Identities=25% Similarity=0.463 Sum_probs=211.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..++..++|+.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3689999999997544569999999999999999999999999999999999997 789999999999988888999999
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+|+||++.+|++|++||+.... ..++++++++++.+++.++++.+|.++++.++++|.+||||||||++||||++++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999996432 2356788999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|+++||||||++||+.+++.+.+.|++...++|+|+||||++++..||||++|++|++++.|+|+++.+++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~ 227 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK 227 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc
Confidence 99999999999999999999999999887789999999999999889999999999999999998877654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=397.91 Aligned_cols=223 Identities=32% Similarity=0.481 Sum_probs=200.8
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc-----cEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-----G~I~~~g~~i~~--~~~ 258 (426)
..++++||++.|++. .+|+|||++|++++++|++||||||||||++++.++.+..+ |+|.++|+++.+ .+.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 358999999999854 59999999999999999999999999999999999998876 999999999976 467
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.++|+++|+|||.|..|+.||+||+.||.+.++.. ++.++++++.+.+++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 89999999999999999999999999986544332 3557888999998876643 345678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|+||||||+-+|+|||||||||+|||.+..+|.+.+.+++++-|||+|||++..+. .+|+..++..|+++|.|+.+.++
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 99999999999999999999999999999999999999998899999999998775 79999999999999999999999
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
.+++
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=421.90 Aligned_cols=224 Identities=33% Similarity=0.557 Sum_probs=203.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++.. +++++||+|++||+++|+|||||||||||++|+||.+|++|+|.++|.+++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999998642 999999999999999999999999999999999999999999999999999988764 7899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|||++.||+. ||+|||.|+....+. -++++.++++..++.+++++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999975 999999998654332 2466788889999999988877 6999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+++|+++|||||+|+||+..+..+...|+++.+ +.|+|.||||..++. .+|||.||++|+|.+.|+|.++++++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999988754 579999999997775 8999999999999999999999999988
Q ss_pred hhhcCcC
Q 014366 419 LVSAGLV 425 (426)
Q Consensus 419 l~~~~~~ 425 (426)
.+.++++
T Consensus 228 ~fVA~Fi 234 (338)
T COG3839 228 LFVAGFI 234 (338)
T ss_pred hhhhhhc
Confidence 8888765
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=406.75 Aligned_cols=217 Identities=33% Similarity=0.456 Sum_probs=195.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++|+|++ +++++|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999985 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHcCCCCC--------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||||++.. |..||+|-+.+|+.. ...+.+.+.++++.+++.++.++ ...+||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 99999765 566999999987532 11233457788999999888766 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHH-HhcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+++|++|+||||||+||..++.++++.++++. ++.|+|+++||++.+ ++||++++|++|+++..|+|++..+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999986 368999999999887 5899999999999999999998877
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
.+
T Consensus 229 ~e 230 (258)
T COG1120 229 EE 230 (258)
T ss_pred HH
Confidence 64
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=422.20 Aligned_cols=225 Identities=32% Similarity=0.535 Sum_probs=201.8
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..++++||+++|++ ..+++|+||+|++||+++|+|||||||||+|++|+||..|++|+|.++|+++..+++. ++.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 36999999999984 4699999999999999999999999999999999999999999999999999998765 6789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|||+..||+. ||+|||.||..... .. .+++.++++.+++.++..+.| .+|||||+||||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 999999999965 99999999865211 22 247788899999999888766 79999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+.+|++||||||.|+||.+-+..++..++++.+ +.|.|+||||.+++ ..+|||.||++|+|.+.|+|++++.++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999999999999988743 68999999999776 589999999999999999999999998
Q ss_pred chhhhcCcC
Q 014366 417 DSLVSAGLV 425 (426)
Q Consensus 417 ~~l~~~~~~ 425 (426)
...+.+.++
T Consensus 229 ~~~fVA~Fi 237 (352)
T COG3842 229 ATRFVADFI 237 (352)
T ss_pred chHHHHHHh
Confidence 887766543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=417.71 Aligned_cols=227 Identities=29% Similarity=0.416 Sum_probs=195.6
Q ss_pred CCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--C
Q 014366 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--I 256 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~ 256 (426)
..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346799999999997544569999999999999999999999999999999999996 579999999999873 3
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHH-----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER-----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+...+|+.++||||+|++|++|++||+.++......++++ +..+++.+++ +.++++.+++++.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 4457788999999999999999999998754222222222 3444555543 335567888999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHh-cCEEEEEeCCEEEEecccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMM-AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~D~i~vl~~G~i~e~g~~~ 410 (426)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|+++|.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999875 9999999999999999999
Q ss_pred ccccCcc
Q 014366 411 LLGSNHD 417 (426)
Q Consensus 411 ~l~~~~~ 417 (426)
++.+++.
T Consensus 310 ~l~~~~~ 316 (329)
T PRK14257 310 TIFIHPK 316 (329)
T ss_pred HHhcCCC
Confidence 8877654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=388.77 Aligned_cols=207 Identities=36% Similarity=0.513 Sum_probs=176.3
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H-
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L- 261 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~- 261 (426)
++++||++.|..+. ..+|+++||+|++||+++|+||||||||||+++|.|+.+|++|.|.++|+++..++.++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999997542 36899999999999999999999999999999999999999999999999999887543 3
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
|++||||||+..|++. |++||+.++....... .+.....++.+++.+.... ..+.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 4679999999999865 9999998532222222 3344555666666655541 23579999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
||||||+.+|++++.||||++||+++.+.|++.++++. .++|+|+||||+..+..|||++.|++|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999984 368999999999999999999999999954
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=397.65 Aligned_cols=226 Identities=43% Similarity=0.708 Sum_probs=205.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999997533469999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
+||++.+|+.|++||+.++.. ....+++...++..++.++++.+|.|+++.++.++.+||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EcCCchhccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999998899999987543 233455666778888999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999998767899999999999988999999999999999998776655
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=393.26 Aligned_cols=215 Identities=32% Similarity=0.447 Sum_probs=189.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++|+|++. ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999864 49999999999999999999999999999999999999999999999988765422 46799
Q ss_pred EEecCCC---CCcccHHHHHcCCCCCC--------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 267 LVSQDIT---LFSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 267 ~v~Q~~~---lf~~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
||||... -|+.||+|-+.++.... ..+.+++.++++.+++.++.++ +..+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 9999664 47889999998874321 1235788999999999988765 457999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++++ ++||++||||++.+. +||+|+.| ++++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999999964 799999999999885 89999999 56788999999888
Q ss_pred cCcch
Q 014366 414 SNHDS 418 (426)
Q Consensus 414 ~~~~~ 418 (426)
+.+..
T Consensus 227 ~~~~l 231 (254)
T COG1121 227 TEENL 231 (254)
T ss_pred CHHHH
Confidence 76543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=384.03 Aligned_cols=219 Identities=32% Similarity=0.505 Sum_probs=191.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 262 (426)
..|++++|+++|+++ .+++|+||+|++||+++|+||||||||||+|+|.|+.+|++|+|+++|+++.+++.. ++|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 369999999999864 699999999999999999999999999999999999999999999999999988765 458
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCC-CCCCCHHHHH----HHHHHhchHHH-HHhcCCCcccccCCCCCCCChHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDL-MTKIDMERVE----HTARTANADEF-VRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~-~~~~~~~~~~----~~~~~~~l~~~-~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++|++||...||+. ||+||+.|... +.+.+++.++ ..++.+|+... .+.+| ++|||||++|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 899999999999965 99999998543 2234444433 34556666555 44444 7999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+|||||++.||+++++|||||||||.+...+-+.|+++.+ +.|+++||||++.+. .|||++++.+|+|+..|+++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999864 689999999998885 7999999999999999999988
Q ss_pred ccCcc
Q 014366 413 GSNHD 417 (426)
Q Consensus 413 ~~~~~ 417 (426)
.+.++
T Consensus 234 ~~sd~ 238 (263)
T COG1127 234 LASDD 238 (263)
T ss_pred HhCCC
Confidence 87543
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=388.34 Aligned_cols=219 Identities=37% Similarity=0.646 Sum_probs=203.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754346999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|+||++.+|+.|++||+.+... ...+++.++++..++.+++.++|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EECCCCccccchHHHHhCcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999998999999976532 3456778889999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999876789999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-52 Score=391.48 Aligned_cols=227 Identities=54% Similarity=0.807 Sum_probs=206.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543369999999999999999999999999999999999999999999999999887777777889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+.++... ...++....++..++.++++.+|.|+++.++.++.+||||||||++|||||+.+|+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886432 24456667778888999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 999999999999999999999999987788999999999998889999999999999999887765443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=392.88 Aligned_cols=221 Identities=36% Similarity=0.535 Sum_probs=198.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC-CCCHHHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~-~~~~~~~r~~i 265 (426)
.++++|++|+|+++ .++++++||+|++||.++|+|+||||||||+++++|+++|++|.|.++|.++. ..+..++|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48899999999876 67999999999999999999999999999999999999999999999999987 36778899999
Q ss_pred EEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
|||+|+| .+|..||.|.++|+......+.+ ++.++++.+++.++.++.| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 58899999999998765455543 4567777888877766544 79999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
.+|+.+|++||||||||+||+..++.+.+.++++.+ ++|+|++|||++.+. .|||+++|++|+++.+|+|+++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999999864 479999999999986 69999999999999999998888775
Q ss_pred chh
Q 014366 417 DSL 419 (426)
Q Consensus 417 ~~l 419 (426)
+.+
T Consensus 231 ~~l 233 (235)
T COG1122 231 ELL 233 (235)
T ss_pred hhh
Confidence 433
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=368.55 Aligned_cols=208 Identities=38% Similarity=0.524 Sum_probs=187.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+|+||++.|+++ +++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|.++|.|+..++.+ .+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999987 6799999999999999999999999999999999999999999999999999887654 57999
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
||+||||..|.+. ||+||++|.....+.. .+++.++++.+++.+-...+| .+|||||+||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999998754 9999999865433333 356678899999999888888 69999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||++.+|++||.||||.+|||....+|++.+.++. .|.||+|.||+.+.+. .--|++.+++|+++...
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999985 4889999999999997 46799999999998654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=385.68 Aligned_cols=199 Identities=35% Similarity=0.508 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999986 4699999999999999999999999999999999999999999999999988543 45699
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.||+ .||+||+.++...... ..+++.+.++.+++.++-++.| .+||||||||+|||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 9999999996 5999999987543221 2345777888888888888877 6999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeC--CEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDN--GKL 403 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~--G~i 403 (426)
|+.+|++|+||||+++||+.|+..+++.+.++.+ ++||++||||++++ ..+|||++|.+ |+|
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999988753 58999999999877 47999999999 455
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-52 Score=389.92 Aligned_cols=225 Identities=43% Similarity=0.724 Sum_probs=205.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999743 35999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|+||++.+|+.|++||+.++... ...+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999988999999876432 2345677788888999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccccc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999876789999999999988899999999999999887766543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=413.62 Aligned_cols=218 Identities=32% Similarity=0.456 Sum_probs=187.4
Q ss_pred EEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 014366 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 262 (426)
|+++||+++|+.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998876544 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++|+|+||++.+|+ .|++||+.++......+ .+++.++++.+++.++.+. .+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 78999999999996 69999998753221222 2334556666666655544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999853 689999999999985 799999999999999999987765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 231 ~p 232 (343)
T TIGR02314 231 HP 232 (343)
T ss_pred CC
Confidence 53
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=394.44 Aligned_cols=232 Identities=31% Similarity=0.523 Sum_probs=210.7
Q ss_pred CCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 014366 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
..+.|+++|++++|++..+.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45689999999999764346999999999999999999999999999999999999999999999999998887778889
Q ss_pred ceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
.++|++|++.+|++|++||+..... ...+++..+++..++.++++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999965421 2345667788888999999999999999999999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcch
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
++|+++||||||++||+.+++.+.+.++++.++.|+|++||+++.+..||||++|++|++++.|+++++.++.+.
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 247 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccch
Confidence 999999999999999999999999999987668899999999999988999999999999999998877665443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=379.14 Aligned_cols=215 Identities=34% Similarity=0.467 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r~ 263 (426)
.|+++||++.||++ +.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++ .+++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999865 57999999999999999999999999999999999999999999999999988776 456788
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC------------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
++||+||++.|.+. ||.+|+..|... ...+.....++++++++.+..-. +..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999999865 999999766422 12233445667777887776544 5689999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||+|||+|||||+++|+++|.|||+|+|||.+.+.|++.|++.. .+.|+|+.-|+++.++ +||||+-|++|+|+..|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999885 4689999999999986 89999999999999999
Q ss_pred cccccc
Q 014366 408 RSTLLG 413 (426)
Q Consensus 408 ~~~~l~ 413 (426)
++.++.
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 997754
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=384.33 Aligned_cols=219 Identities=42% Similarity=0.704 Sum_probs=199.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999753346999999999999999999999999999999999999999999999999987766666778899
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|++|++.+|+.|++||+.++... .+.+++.+.++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888999999875432 2355677888899999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEec
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999986568999999999988889999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=388.05 Aligned_cols=227 Identities=48% Similarity=0.734 Sum_probs=204.1
Q ss_pred EEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 188 VKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 246999999999999999999999999999999999999999999999999987777667778899
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|++|++.+|+.|++||+.++... ...++....++..++.+++..+|.|+++.++....+||||||||++||||++.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888999999886432 2345566677778899999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 9999999999999999999999999887678999999999998899999999999999999887765543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-51 Score=386.15 Aligned_cols=225 Identities=41% Similarity=0.687 Sum_probs=205.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 359999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+.++... .+.+++...++..++.+++..+|.|+++.++.++.+||||||||++|||||+++|+
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886432 34455677788889999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999988667899999999999988999999999999999987766543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=389.93 Aligned_cols=226 Identities=33% Similarity=0.480 Sum_probs=195.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
+|+++|+++.|+.. .+++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.++|+.+.+.+. ....++|
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 47899999999864 58999999999999999999999999999999999999999999999994333322 2334679
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCC------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMT------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
|||||+..+|+ .||+|||+||.... .....++.+.++.+++..+-++.| .+||||||||||+
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVAL 148 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVAL 148 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHHH
Confidence 99999999995 59999999986322 122456677788888888777766 6999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++||||||+++||..-++++.+-|+++.. +.|+++||||.+++ +.||||++|++|+|...|+|++++.+
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999999999999999999999999999999998753 67999999999887 58999999999999999999999999
Q ss_pred cchhhhcCcC
Q 014366 416 HDSLVSAGLV 425 (426)
Q Consensus 416 ~~~l~~~~~~ 425 (426)
+.+-+.++++
T Consensus 229 P~s~fV~~f~ 238 (345)
T COG1118 229 PASRFVARFL 238 (345)
T ss_pred CCccceeccc
Confidence 8887776653
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=376.04 Aligned_cols=219 Identities=35% Similarity=0.451 Sum_probs=186.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhc
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~ 263 (426)
.++++|+++.|+.+. .+++++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999998652 14999999999999999999999999999999999999999999999998776543 235678
Q ss_pred ceEEEecCCC--CCc-ccHHHHHcCCCCCCC--CCHHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDIT--LFS-GTVAENIGYRDLMTK--IDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~--lf~-~ti~eni~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.+.+|||||. +-+ .||++-|.=+....+ ...+++.++++.+++. +|.++.| .+|||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999997 444 388887753322111 2345577888888884 4666655 699999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~--~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||.-+|++||||||||+||...+..|++.|.+++++ -|.|+||||++.+. .||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999998754 59999999999997 699999999999999999888776
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 232 ~~ 233 (252)
T COG1124 232 HP 233 (252)
T ss_pred CC
Confidence 63
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=407.19 Aligned_cols=219 Identities=30% Similarity=0.479 Sum_probs=190.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 3699999999999999999999999999999999999999999999999999877654 47899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+ .||+||+.|+......+ .+++.++++.+++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999999864322222 234566777777777766655 6999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999998753 689999999998775 7999999999999999999988777644
Q ss_pred h
Q 014366 419 L 419 (426)
Q Consensus 419 l 419 (426)
.
T Consensus 229 ~ 229 (356)
T PRK11650 229 T 229 (356)
T ss_pred H
Confidence 3
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=399.30 Aligned_cols=228 Identities=26% Similarity=0.373 Sum_probs=188.8
Q ss_pred ccEEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------
Q 014366 186 GDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------ 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~------ 256 (426)
..|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999743 13599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCC
Q 014366 257 ----------RLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGP 323 (426)
Q Consensus 257 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~ 323 (426)
....+|++++||||+| .+|+.|++||+.++......+.++..+. ..++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcC
Confidence 2456788999999998 6888899999988632222233222111 12334443 454 45677
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G 401 (426)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +++|||+|||+++.+ ..||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999998874 478999999999987 579999999999
Q ss_pred EEEEeccccccccCcchhh
Q 014366 402 KLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~~l~ 420 (426)
++++.|+++++..+.+.+.
T Consensus 253 ~i~~~g~~~~~~~~~~~~~ 271 (320)
T PRK13631 253 KILKTGTPYEIFTDQHIIN 271 (320)
T ss_pred EEEEeCCHHHHhcCHHHHH
Confidence 9999999988776654333
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=357.81 Aligned_cols=212 Identities=37% Similarity=0.535 Sum_probs=188.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+.+++|.|+|+.. =-..+++|++||++||+||||||||||+++|+||..|.+|+|+++|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999753 2468899999999999999999999999999999999999999999999876654 456999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCC----CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLM----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||+..||.. ||.+|+.+|... ...+.++++.++..+|+..+.+++| .+||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999965 999999987531 2234577889999999999999999 59999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+++-|||+||||+|+|||.-+.++...+.++.. +.|++||||+++.+. .+||++++++|+|.++|+.+++...+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999999999998863 579999999999886 79999999999999999987766543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=405.53 Aligned_cols=222 Identities=31% Similarity=0.478 Sum_probs=191.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999975 358999999999999999999999999999999999999999999999999987654 357899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. |++||+.|+......+ .+++.++++..++.++.++ .+.+||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999999864322222 2345566666676665554 447999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++ ..||||++|++|++++.|+++++++++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998853 68999999999987 57999999999999999999988877655
Q ss_pred hhhcC
Q 014366 419 LVSAG 423 (426)
Q Consensus 419 l~~~~ 423 (426)
.+.+.
T Consensus 231 ~~~a~ 235 (351)
T PRK11432 231 RFMAS 235 (351)
T ss_pred hHHHH
Confidence 44433
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=392.41 Aligned_cols=222 Identities=30% Similarity=0.492 Sum_probs=191.0
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++. ++..|++||+.++......+ .+++.++++.+++.++.+.. +.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 45679999998763222222 23456677777777666554 479999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||||++|++|++++.|+++++..+..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcChH
Confidence 999999999999999999999999999999998853 789999999999888899999999999999999887766543
Q ss_pred hh
Q 014366 418 SL 419 (426)
Q Consensus 418 ~l 419 (426)
.+
T Consensus 233 ~~ 234 (279)
T PRK13650 233 DL 234 (279)
T ss_pred HH
Confidence 33
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-51 Score=385.24 Aligned_cols=215 Identities=31% Similarity=0.481 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 264 (426)
|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999975 359999999999999999999999999999999999999999999999999877654 456788
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|+||++.+|+. |++||+.++... ...+. +++.++++.+++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 9999999999875 999999875221 11222 223444555544443 344557999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998753 689999999999886 6999999999999999998876544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=380.67 Aligned_cols=213 Identities=38% Similarity=0.556 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCccEEEEcCEeCCCCC--HHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILVDDHDVQNIR--LDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~-----~p~~G~I~~~g~~i~~~~--~~~ 260 (426)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999753 5999999999999999999999999999999999999 999999999999987665 456
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++++++|+||++.+|+.|++||+.++...... ..+++.++++..++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 77889999999998877999999875321111 12345556666666555443210 47999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999999865589999999999875 799999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=404.57 Aligned_cols=220 Identities=30% Similarity=0.445 Sum_probs=188.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999975 3589999999999999999999999999999999999999999999999999876543 67899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+ .|++||+.|+......+ .+++.++++..++.++. ...+.+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999999864322222 23344555555554444 44568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++. .||||++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999998753 689999999999874 7999999999999999999988877654
Q ss_pred hhh
Q 014366 419 LVS 421 (426)
Q Consensus 419 l~~ 421 (426)
.+.
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=390.87 Aligned_cols=226 Identities=29% Similarity=0.416 Sum_probs=186.9
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----~~~~~ 260 (426)
|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+|+.++||+|+| .+|+.|+.||+.++......+.+ ++.++++.+++.+ ...+..+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 788999999998 68888999999876422122222 2344444444421 1234566899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++. ++.|||++||+++.+. .||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999875 4789999999999885 7999999999999999999887
Q ss_pred ccCcchhhhcC
Q 014366 413 GSNHDSLVSAG 423 (426)
Q Consensus 413 ~~~~~~l~~~~ 423 (426)
..+.+.+...|
T Consensus 232 ~~~~~~~~~~~ 242 (288)
T PRK13643 232 FQEVDFLKAHE 242 (288)
T ss_pred HcCHHHHHHcC
Confidence 76544344333
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=402.58 Aligned_cols=222 Identities=33% Similarity=0.509 Sum_probs=192.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999975 3589999999999999999999999999999999999999999999999999876543 5689
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+||||++.+|+. ||+||+.|+......+ .+++.++++..++.++.++.| .+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 9999999864322222 234566677777777666655 699999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++. .||||++|++|++++.|+++++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 689999999999874 799999999999999999998887765
Q ss_pred hhhhc
Q 014366 418 SLVSA 422 (426)
Q Consensus 418 ~l~~~ 422 (426)
..+.+
T Consensus 238 ~~~~a 242 (375)
T PRK09452 238 NLFVA 242 (375)
T ss_pred cHHHH
Confidence 54433
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=376.96 Aligned_cols=205 Identities=35% Similarity=0.509 Sum_probs=174.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999975333599999999999999999999999999999999999999999999999998765433 36788
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|+||++.+|+ .|++||+.++...... ..+++.++++..++.++.++ ...+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 5999999864211111 13445666676666655544 3469999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
|||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999875 4689999999999886 6999999999975
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=388.84 Aligned_cols=220 Identities=32% Similarity=0.507 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHh
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r 262 (426)
|+++||+|+|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997531 36999999999999999999999999999999999999999999999999987643 34678
Q ss_pred cceEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 263 RHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 ~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++++||||++ .+|+.|++||+.++....+.+.+ ++.++++.+++. +.+..+..+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 46788999999875322222332 233444444442 01344566789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++.+. .||||++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998853 689999999999885 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
++.
T Consensus 234 ~~~ 236 (287)
T PRK13637 234 KEV 236 (287)
T ss_pred hCH
Confidence 543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=402.72 Aligned_cols=220 Identities=30% Similarity=0.450 Sum_probs=188.4
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc--cEEEEcCEeCCCCCHHHHh
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS--GCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~--G~I~~~g~~i~~~~~~~~r 262 (426)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 357999999999975 359999999999999999999999999999999999999999 999999999976554 35
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.++||||++.+|+. ||+||+.|+......+. +++.++++..++.++.++ .+.+|||||||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHHH
Confidence 689999999999965 99999987642222222 334555565555555544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG---HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++. .||||++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998753 579999999999875 79999999999999999999888
Q ss_pred cCcchh
Q 014366 414 SNHDSL 419 (426)
Q Consensus 414 ~~~~~l 419 (426)
+++...
T Consensus 228 ~~p~~~ 233 (362)
T TIGR03258 228 DAPADG 233 (362)
T ss_pred hCcCcH
Confidence 776443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=375.63 Aligned_cols=218 Identities=44% Similarity=0.694 Sum_probs=194.3
Q ss_pred CCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 014366 184 INGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
..+.|+++|++++|++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 346799999999997532 3699999999999999999999999999999999999999999999999988776666777
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+.++|++|++.+|+.|++||+.++... ....++.+..+...+.++++.+|.|+++.+++++.+||||||||++||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 889999999999989999999875432 223344455566678899999999999999999999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999998767899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=375.23 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=180.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999975324699999999999999999999999999999999999999999999999998654 3566788999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+ .|++||+.+.......+ .+++.++++..++.+.. +....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 999999884 69999997642111111 13344555555555443 334579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999999999876789999999999985 6999999999999999987654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-50 Score=379.89 Aligned_cols=217 Identities=35% Similarity=0.543 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++|+|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999975 35999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+|+.|++||+.++........+++.+.++..++. ++ ....+.+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY-----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH-----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999988999999875322222233445555555553 22 2345679999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999998753 689999999999886 79999999999999999988776543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=399.76 Aligned_cols=218 Identities=30% Similarity=0.473 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4889999999975 359999999999999999999999999999999999999999999999999976543 356899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCC----CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLM----TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||||++.+|+. |++||+.++... ...+ .+++.++++..++.++.++ .+.+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 99999999975 999999986421 1112 2344556666666555544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998853 689999999999875 799999999999999999998877
Q ss_pred Ccchh
Q 014366 415 NHDSL 419 (426)
Q Consensus 415 ~~~~l 419 (426)
++...
T Consensus 227 ~p~~~ 231 (353)
T PRK10851 227 EPATR 231 (353)
T ss_pred Cccch
Confidence 65443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=385.76 Aligned_cols=219 Identities=34% Similarity=0.498 Sum_probs=189.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754346999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. ++..|++||+.++......+ .+++.++++.+++.++++..| .+||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 55679999998753221122 234566677777776666544 699999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++.+..||++++|++|++++.|+++++..+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999998863 68999999999998889999999999999999987766543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=398.89 Aligned_cols=217 Identities=34% Similarity=0.470 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 014366 188 VKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (426)
Q Consensus 188 i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 262 (426)
|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2246999999999999999999999999999999999999999999999999998776543 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++++|+||++.+|+ .|++||+.++......+. +++.+.++..++.++ ....+.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 88999999999986 599999987532112222 233444555444443 44456799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 689999999999986 699999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=385.46 Aligned_cols=215 Identities=33% Similarity=0.481 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999743 35999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCC--CCCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~--~lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++ .++..|++||+.++......+ .+++.++++.+++.++.++.| .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 467789999998753211122 234556677777766655544 699999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
||+.+|++|||||||++||+.++..+.+.|+++. ++.|+|++||+++.+ +.||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999885 468999999999988 479999999999999999986543
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=390.04 Aligned_cols=224 Identities=28% Similarity=0.409 Sum_probs=185.2
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--------
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-------- 255 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~-------- 255 (426)
.|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997532 259999999999999999999999999999999999999999999999877531
Q ss_pred ----------------CCHHHHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhc
Q 014366 256 ----------------IRLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTL 313 (426)
Q Consensus 256 ----------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l 313 (426)
.+...+++.+|||||+| .+|..|++||+.++......+. +++.++++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----- 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE----- 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 12356788999999986 5777899999987642222232 23444555555431
Q ss_pred CCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-Hh
Q 014366 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MM 391 (426)
Q Consensus 314 p~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~ 391 (426)
...+..+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .+.|||+|||+++.+ ..
T Consensus 157 -----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 157 -----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 23345668999999999999999999999999999999999999999999999875 478999999999987 57
Q ss_pred cCEEEEEeCCEEEEeccccccccCcchhh
Q 014366 392 AKRVFLLDNGKLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 392 ~D~i~vl~~G~i~e~g~~~~l~~~~~~l~ 420 (426)
||||++|++|++++.|+++++.++.+.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~~~~~~ 260 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSDNKFLI 260 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcCHHHHH
Confidence 99999999999999999988877654433
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=387.69 Aligned_cols=220 Identities=27% Similarity=0.408 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----~~~~~ 260 (426)
++++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 359999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+++.++||||+| .+|+.|++||+.++......+.+ ++.++++.+++.+ ...+.++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 778899999997 57788999999875322222222 3344455555431 2234466899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998853 689999999999885 799999999999999999887
Q ss_pred cccCcc
Q 014366 412 LGSNHD 417 (426)
Q Consensus 412 l~~~~~ 417 (426)
+.++..
T Consensus 233 ~~~~~~ 238 (290)
T PRK13634 233 IFADPD 238 (290)
T ss_pred HhcCHH
Confidence 765543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=386.66 Aligned_cols=224 Identities=26% Similarity=0.468 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 259 (426)
.++++||+|+|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 3599999999999999999999999999999999999999999999999998653 235
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHH
Q 014366 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl 336 (426)
.+|+.|+||||+| .+|+.|++||+.++......+.++..+. +.+.++.+ |++ ...+..+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999997 5788899999987532212232222211 12233332 554 234556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .+.|||++||+++.+. .||||++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 3689999999999885 79999999999999999988776
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
++..
T Consensus 235 ~~~~ 238 (286)
T PRK13646 235 KDKK 238 (286)
T ss_pred hCHH
Confidence 6543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-50 Score=378.03 Aligned_cols=219 Identities=29% Similarity=0.458 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 266 (426)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999975 359999999999999999999999999999999999999999999999999987766554 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC----------CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI----------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
|+||++.+|+. |++||+.++...... ..++. ...+.++++.+ |++...+....+||||||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQRR 151 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence 99999999876 999999875321110 01111 11223444444 55666667788999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++||||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999999999875 5789999999999985 69999999999999999887765
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
++
T Consensus 232 ~~ 233 (236)
T cd03219 232 NN 233 (236)
T ss_pred cC
Confidence 44
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=378.23 Aligned_cols=214 Identities=34% Similarity=0.527 Sum_probs=180.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999975 359999999999999999999999999999999999999999999999999865543 256799
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCC----C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKI----D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~----~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
|++|++.+|+ .|++||+.++...... + .+++.++++..++.++. ...+.+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999886 5999999875321111 1 12334455555554444 3455799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 689999999999875 799999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=370.37 Aligned_cols=201 Identities=37% Similarity=0.528 Sum_probs=172.7
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 359999999999999999999999999999999999999999999999998753 4567789999
Q ss_pred ecCCC--CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 269 SQDIT--LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 269 ~Q~~~--lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
||++. +|+.|++||+.++........+++.++++.+++.++.++. ..+||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCC
Confidence 99983 5678999999875432222234566777777776655443 4699999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999874 5689999999999986 69999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=400.30 Aligned_cols=219 Identities=31% Similarity=0.502 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 4899999999975 359999999999999999999999999999999999999999999999999976654 356799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. |++||+.++......+ .+++.++++..++.++.++ ...+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999998764221222 2345556666666555444 457999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998743 689999999999875 7999999999999999999888766544
Q ss_pred hh
Q 014366 419 LV 420 (426)
Q Consensus 419 l~ 420 (426)
.+
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 33
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-50 Score=373.64 Aligned_cols=205 Identities=35% Similarity=0.502 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----H
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS----L 261 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~----~ 261 (426)
|+++||+++|++.. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 36999999999999999999999999999999999999999999999999987765322 3
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++.++|+||++.+|+. |++||+.++......+ .+++.++++..++. ...+..+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-----------DRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhcChhhcCHHHHHHH
Confidence 5679999999999875 9999998753222111 12334444444444 344445679999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998854 6899999999998889999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-50 Score=372.57 Aligned_cols=205 Identities=36% Similarity=0.548 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 468999999975 36999999999999999999999999999999999999999999999999987644 24678999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+ .|++||+.++......+ .+++.++++..++.++.+ ....+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999998643211111 223445555555555444 34579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|++|||||||++||+.+++.+.+.|+++. .++|||++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999874 3689999999999875 79999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=378.44 Aligned_cols=214 Identities=34% Similarity=0.484 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r~~ 264 (426)
++++||+++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 35999999999999999999999999999999999999999999999999987765 3456788
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
++|+||++.+|+ .|++||+.++.... ....+++.++++..++ ....+..+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCHH
Confidence 999999999886 59999997643210 0112233344444444 33445567899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999874 3689999999999987 799999999999999998
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 87764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=382.34 Aligned_cols=219 Identities=29% Similarity=0.511 Sum_probs=186.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|+++.+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999743356999999999999999999999999999999999999999999999999998766677888999
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. ++..|++||+.++......+.+ .+.++++..++.++.++ .+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999984 4467999999875321112222 24455666666655544 45799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++..++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998753 48999999999988889999999999999999887766554
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=375.41 Aligned_cols=217 Identities=32% Similarity=0.453 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 262 (426)
|+++|++++|++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 2699999999999999999999999999999999999999999999999998766543 346
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.++|+||++.+|+ .|++||+.++......+ .+++.++++..++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 78999999999997 59999997642111111 223445555555554443 455799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
||||++.+|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999874 3 689999999999985 699999999999999998776654
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=397.52 Aligned_cols=221 Identities=29% Similarity=0.454 Sum_probs=188.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++ .++.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999975 359999999999999999999999999999999999999999999999999977653 46789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|||||++.+|+. |++||+.|+....+.+. +++.++++..++.++.++ .+.+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998643222222 334455555555555444 45799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||+.+|++||||||||+||+.+++.+.+.|+++. .+.|+|++||+++++ ..|||+++|++|++++.|++++++.++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999999888764 268999999999987 5799999999999999999998887765
Q ss_pred hhhh
Q 014366 418 SLVS 421 (426)
Q Consensus 418 ~l~~ 421 (426)
..+.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 4433
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-50 Score=398.64 Aligned_cols=208 Identities=27% Similarity=0.439 Sum_probs=180.0
Q ss_pred EeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcceEEEecC
Q 014366 196 KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQD 271 (426)
Q Consensus 196 ~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~i~~v~Q~ 271 (426)
+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+..++ |+.++||||+
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4543 359999999999999999999999999999999999999999999999999998888776 7789999999
Q ss_pred CCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 272 ITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 272 ~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+.+|+. ||+||+.++....+.+ .+++.++++.+++.++.++ .+.+||||||||++|||||+.+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-----------~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-----------YPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 999975 9999998754322222 2345566666666655554 45799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++||||||||+||+.+++.+++.+.++. .++|+|+|||+++.+ +.||||++|++|++++.|+++++.+++
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 9999999999999999999999999874 268999999999986 579999999999999999998877654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=368.99 Aligned_cols=205 Identities=30% Similarity=0.439 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999965 3699999999999999999999999999999999999999999999999987654 456778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.+|+ .|++||+.++......+.+++.++++..++.+..++ .+.+||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 699999976432112245567777788887766554 34799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999875 4689999999999885 79999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=384.11 Aligned_cols=219 Identities=28% Similarity=0.448 Sum_probs=185.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 264 (426)
.|+++|++++|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 58999999999633 36999999999999999999999999999999999999999999999999984 2334567889
Q ss_pred eEEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|+||++ .+|+.|++||+.++......+. +++..+++..++.++. +..+.+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHHH
Confidence 99999998 4678899999987432111222 3345556666665544 34568999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998853 789999999999986 7999999999999999998877665
Q ss_pred cc
Q 014366 416 HD 417 (426)
Q Consensus 416 ~~ 417 (426)
..
T Consensus 233 ~~ 234 (283)
T PRK13636 233 KE 234 (283)
T ss_pred HH
Confidence 43
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=364.60 Aligned_cols=203 Identities=35% Similarity=0.616 Sum_probs=179.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46999999999975434699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+|+||++.+|++|++||+.+... .+.+++.++++ +++++.+|||||+||++||||++.+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~---~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE---YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC---CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999976432 23333333222 2346789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999998767899999999999878999999999999988754
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=376.76 Aligned_cols=214 Identities=34% Similarity=0.478 Sum_probs=180.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 264 (426)
|+++||+++|+.+ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999722 469999999999999999999999999999999999999999999999999876553 345778
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
++|+||++.+|+ .|++||+.++.... ....+++.++++..++.+ ..+..+.+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHH
Confidence 999999999886 59999997653210 011223344444444443 344466899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999874 2 689999999999985 799999999999999999
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 88763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=372.60 Aligned_cols=211 Identities=30% Similarity=0.422 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 261 (426)
.++++||+|+|+++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 36999999999999999999999999999999999999999999999999998776543 3
Q ss_pred h-cceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 R-RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 r-~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+ +.++|+||++.+|+. |++||+.++......+ .+++.++++..++ +...+..+.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----------EHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHH
Confidence 3 679999999998865 9999997632111111 1233444454444 444445568999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
++||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 3689999999999998889999999999998775
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=382.74 Aligned_cols=219 Identities=30% Similarity=0.431 Sum_probs=188.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~I~~~g~~i~~~~~~~~r~ 263 (426)
.|+++|++|+|++...++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999997533469999999999999999999999999999999999999998 89999999998766667788
Q ss_pred ceEEEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+++|+||++. +++.|++||+.++......+. +++.++++.+++.++.++. ..+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHH
Confidence 9999999984 457799999987532222232 3355566667776655554 4799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+..|||+++|++|++++.|+++++..+
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 6899999999999888999999999999999998876654
Q ss_pred c
Q 014366 416 H 416 (426)
Q Consensus 416 ~ 416 (426)
.
T Consensus 234 ~ 234 (282)
T PRK13640 234 V 234 (282)
T ss_pred H
Confidence 3
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=388.82 Aligned_cols=215 Identities=30% Similarity=0.447 Sum_probs=182.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 36999999999975 35999999999999999999999999999999999999999999999999987644 4568889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+||++.+|+ .|++||+.+.......+. +++.++++.+++.+. ......+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-----------ADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-----------hcCchhhCCHHHHHHHHHHH
Confidence 99999999986 599999975322222222 223344444444333 33455799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
||+.+|++|+|||||+|||+.+++.+.+.|+++. +++|||++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 4689999999999986 699999999999999999887754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=377.95 Aligned_cols=219 Identities=33% Similarity=0.492 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~~--~~~~ 260 (426)
|+++||+++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998753 3455
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++.++|+||++.+|+.|++||+.++..... .+ .+++.++++..++.+++. ..++..+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 6788999999999988999999986422111 11 233445555555542211 23345668999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999866689999999999885 799999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 233 ~ 233 (247)
T TIGR00972 233 N 233 (247)
T ss_pred C
Confidence 4
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=370.13 Aligned_cols=211 Identities=31% Similarity=0.448 Sum_probs=179.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999975 3599999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+++. |++||+.++...... ..+++.++++..++.++.+. ...+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999998875 999999764211111 12345666677776665544 3479999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999875 3 689999999999886 6999999999999999877653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=377.05 Aligned_cols=220 Identities=30% Similarity=0.431 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999975 369999999999999999999999999999999999984 69999999999998777777788
Q ss_pred ceEEEecCCCCCcccHHHHHcCCCCCCC------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDITLFSGTVAENIGYRDLMTK------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eni~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.++|+||++.+|+.|++||+.++..... ...+++.++++.+++.+++.. ...+++.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 9999999999998999999987532111 112234556666666443322 234567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999866889999999999885 7999999999999999998877654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=370.25 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=178.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 266 (426)
|+++||+++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 5789999999753 59999999999999999999999999999999999999999999999999887766544 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC--CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
|+||++.+|+. |++||+.++...... ..+++.++++.. + +++...+..+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF---------P-RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH---------H-hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999876 999999875432110 111222222222 1 1233345567899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999875 4689999999999875 79999999999999998876654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=397.72 Aligned_cols=217 Identities=30% Similarity=0.477 Sum_probs=191.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++..+++++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999975 36999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCC-CcccHHHHHcCCCCC-----C---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLM-----T---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~-----~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||+|++.+ |+.|++||+.++... . ..+.++++++++.+++.++.++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 467999999876421 1 1123456677777777666544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|||||+++|++|||||||++||+.++.++++.|+++. ++.|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999985 4689999999999985 7999999999999999999876654
Q ss_pred c
Q 014366 416 H 416 (426)
Q Consensus 416 ~ 416 (426)
+
T Consensus 230 ~ 230 (402)
T PRK09536 230 D 230 (402)
T ss_pred H
Confidence 3
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=376.32 Aligned_cols=218 Identities=32% Similarity=0.520 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++||+++|++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 359999999999999999999999999999999999999999999999999887777777889999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+ .|++||+.++......+ .+++.++++..++.+ ....++.+.+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999986 59999997643211112 122333444444332 0134556789999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++.+.++
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998753 689999999999875 7999999999999999988766543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=377.30 Aligned_cols=222 Identities=32% Similarity=0.472 Sum_probs=186.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 35999999999975 359999999999999999999999999999999999974 689999999999864 334
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++...... ..+++.++++.+++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 5677889999999999988999999864211111 1234455566666543322 234556789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999866789999999999885 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
.+++
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 6553
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=368.71 Aligned_cols=208 Identities=29% Similarity=0.470 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
|+++||+++|++.. .++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997531 159999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++.+|+. |++||+.+.......+ .+++.++++..++.+..+ ..+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999875 9999997632211111 234455566665555443 456799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
|++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 4689999999999875 79999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=368.05 Aligned_cols=205 Identities=32% Similarity=0.529 Sum_probs=177.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++|+|++. ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 5789999999753 5999999999999 99999999999999999999999999999999999987665 667889999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.+.......+ .+++.++++..++.++.+. .+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999997632111111 2345666777777665443 4478999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999876789999999999985 79999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=375.71 Aligned_cols=221 Identities=31% Similarity=0.437 Sum_probs=185.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999975 3599999999999999999999999999999999999997 48999999998753 2345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++..... .+ .+.+.++++.+++.+.+. ...+.++.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHHHH
Confidence 67888999999999988899999987532111 11 233455555555532221 1233467899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999875 79999999999999999998877
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 238 ~~~ 240 (254)
T PRK14273 238 FNP 240 (254)
T ss_pred hCC
Confidence 654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-49 Score=379.47 Aligned_cols=219 Identities=27% Similarity=0.429 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.|+++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999876667788899
Q ss_pred EEEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|++|++. ++..|+.||+.++......+. +++..+++.+++.++.+. .+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 557799999986532111222 234566666677665544 4579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+++|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+..||+|++|++|++++.|+++++..+.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999998853 68999999999998889999999999999999988776543
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=368.22 Aligned_cols=206 Identities=34% Similarity=0.477 Sum_probs=172.2
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 262 (426)
|+++||+++|++.. .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 35999999999999999999999999999999999999999999999999987766543 33
Q ss_pred -cceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 263 -RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 -~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+.++|+||++.+|+ .|++||+.++......+ .+++.++++..++. ......+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHH
Confidence 67999999999885 59999997632111111 12333444444444 344445689999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
+||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875 268999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=379.21 Aligned_cols=217 Identities=27% Similarity=0.447 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999643 35999999999999999999999999999999999999999999999999987766677888999
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. +|+.|++||+.++......+. +++.++++.+++.++.++ .+..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999984 677899999986432112222 234566666666665554 34799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 689999999999984 7999999999999999998877654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=377.98 Aligned_cols=216 Identities=31% Similarity=0.482 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~~i~ 266 (426)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999987654 356778899
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. +++.|++||+.++......+ .+++.++++..++.++.+ ..+..||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHHH
Confidence 9999985 45679999998753211122 233445555555555443 455799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|+++||||||++||+.++..+.+.|+++. ++.|+|++||+++.+..|||+++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999875 47899999999999988999999999999999998776554
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=371.05 Aligned_cols=219 Identities=28% Similarity=0.460 Sum_probs=181.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 266 (426)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999975 359999999999999999999999999999999999999999999999999877665443 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+|+. |++||+.++........++... .+.++++.+ |++...+..+.+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 9999998643211112111111 122333333 444455566789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 99999999999999999999999999875 4689999999998775 7999999999999999988876544
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=377.36 Aligned_cols=222 Identities=29% Similarity=0.462 Sum_probs=187.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754345999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEecCCC-CC-cccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT-LF-SGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~-lf-~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. +| ..|+++|+.++........ +++.++++..++.++. +..+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9999985 44 5589999987532111122 2344455555554443 3456799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcch
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||||++|++|++++.|+++++.++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 235 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCHHH
Confidence 99999999999999999999999999999998753 6899999999998877999999999999999998877665433
Q ss_pred h
Q 014366 419 L 419 (426)
Q Consensus 419 l 419 (426)
+
T Consensus 236 ~ 236 (269)
T PRK13648 236 L 236 (269)
T ss_pred H
Confidence 3
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=379.41 Aligned_cols=219 Identities=31% Similarity=0.452 Sum_probs=187.6
Q ss_pred cEEEEeEEEEeCCC----CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHH
Q 014366 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~ 261 (426)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 246999999999999999999999999999999999999999999999999987543 3556
Q ss_pred hcceEEEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 RRHVGLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 r~~i~~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++.++|+||++. +|..|+.||+.++......+ .+++.++++.+++.++.++. ..+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence 888999999984 56669999998753211112 23456667777777666554 47999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+.+|+++||||||++||+.++..+.+.|+++. .+.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999884 378999999999998789999999999999999988876
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 554
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=389.22 Aligned_cols=220 Identities=27% Similarity=0.346 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCC-----------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 014366 187 DVKFCNISFKYADN-----------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-----------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~ 255 (426)
-|+++||+++|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2358999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEEecCC--CCCc-ccHHHHHcCCCCCC--CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 256 IRLDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLMT--KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 256 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~eni~~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
.+..+ +|++++||||++ .+++ .|+.||+.++.... ..+. +.+.+.++.+++.+ ...+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 76543 567899999998 4774 69999996531100 1222 23344455555521 12344
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
.+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999998853 689999999999986 6999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+++|.|+++++.+++
T Consensus 238 G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 238 GHAVELGTYDEVYHNP 253 (331)
T ss_pred CEEEEEcCHHHHHcCC
Confidence 9999999988776553
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=365.67 Aligned_cols=203 Identities=37% Similarity=0.600 Sum_probs=171.4
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++|++++|++..+++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975323699999999999999999999999999999999999999999999999998877667778899999
Q ss_pred ecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 269 SQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 269 ~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
||++. +++.|++||+.++......+ .+++.+.++..++.++.+ .++.+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 99984 56779999997642211111 223444555555554443 45579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998753 689999999999987 599999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-49 Score=367.29 Aligned_cols=207 Identities=33% Similarity=0.460 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
|+++|++++|++.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998753 35789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++.+|+ .|++||+.++......+ .+++.++++..++.++.++ ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999887 59999997642211111 2345556666666555544 44799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe--CCEEEEecccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD--NGKLEELNRST 410 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~--~G~i~e~g~~~ 410 (426)
||+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999874 3689999999999875 799999999 79999887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=370.94 Aligned_cols=218 Identities=30% Similarity=0.460 Sum_probs=181.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 789999999975 3599999999999999999999999999999999999999999999999998766543 3458999
Q ss_pred EecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.++ ..|++||+.+.......+.++..+ .+.++++.+ |++...+..+.+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999885 569999997643211222211111 122333333 4555556677899999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+++.+.++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 36899999999999888999999999999999988766543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=364.24 Aligned_cols=205 Identities=32% Similarity=0.557 Sum_probs=173.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4789999999753 599999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+ .|++||+.++....... .+++.++++..++.++.+. .+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999998752211112 2234455566666555444 4579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999875 3689999999999876 69999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=377.18 Aligned_cols=222 Identities=31% Similarity=0.474 Sum_probs=186.9
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~ 257 (426)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 357999999999975 3599999999999999999999999999999999999975 89999999999864 33
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC--C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~--~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
...+|+.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+++. +..+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 45678889999999999988999999864311111 1 233455666666644321 2234567899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999866789999999999985 79999999999999999988
Q ss_pred ccccC
Q 014366 411 LLGSN 415 (426)
Q Consensus 411 ~l~~~ 415 (426)
++..+
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 77654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-49 Score=371.70 Aligned_cols=216 Identities=31% Similarity=0.467 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r~~i 265 (426)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999975 35999999999999999999999999999999999999999999999999987542 34567889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++.+|+ .|++||+.++.. ....+. +++.++++..++ +...+..+.+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHHH
Confidence 99999999886 599999987421 111122 223344444444 4444455689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.+++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999999875 4689999999999985 69999999999999999987765543
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=360.28 Aligned_cols=199 Identities=34% Similarity=0.568 Sum_probs=180.1
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
|+++||+++|++.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997642 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++|++|++.+|+.|++||+.+... .+.++..++++.+++.+++..+|.|+++.+++++.+||||||||++||||++.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP---FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC---cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988643 23455667788889999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHH-HHHHc-CCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 345 NSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~-l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
+|+++||||||++||+.+.+.+.+. +++.. ++.|+|++||+++.+..||++++|++|+
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999999999884 56553 4689999999999987899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=375.91 Aligned_cols=222 Identities=32% Similarity=0.461 Sum_probs=186.3
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~ 257 (426)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 346999999999975 359999999999999999999999999999999999986 589999999999853 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCC-CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
...+|++++|+||++.+|+.|++||+.++.... ..+. +++.++++.+++.+.+ .+.+++.+.+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 456788999999999999899999998753211 1122 3345555555543222 223455678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999866789999999999885 799999999999999999887
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 7654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=379.91 Aligned_cols=215 Identities=29% Similarity=0.487 Sum_probs=182.0
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcc
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~ 264 (426)
.++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 467888888753 59999999999999999999999999999999999999999999999999877654432 457
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|+||++.+|+ .|++||+.++......+ .+++.++++.+++.+++++.| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 59999997642111111 234556677777766665544 68999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+++|++|||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|++++.|+++++.+++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999999874 3 689999999999875 79999999999999999988776544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=378.05 Aligned_cols=219 Identities=29% Similarity=0.423 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 259 (426)
.|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997532 3599999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|+||++ .+|+.|++||+.++......+.++ +.++++..++.+ .....++.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 6778899999997 577889999998642211122222 223333333321 234556789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998753 689999999999885 799999999999999998877
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 6554
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=382.88 Aligned_cols=215 Identities=33% Similarity=0.491 Sum_probs=187.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++||+++|++. +.+|+||||+|++||++|++||||||||||+|+|+|+.+|++|+|.++|.+...- ..+.++++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999832 3699999999999999999999999999999999999999999999999988654 667889999
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCC----CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+++. |++||+.|...... ...+++.+.++..++.+.. +.+...||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998865 99999987433222 2245677788877776632 23567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-H-HTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||+||||.++..+.+.|+++.+ + +||+++||.++.+. .||||++|++|+++..|+++++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999864 4 69999999999997 599999999999999998876653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=378.86 Aligned_cols=219 Identities=29% Similarity=0.423 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 259 (426)
.|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997421 3599999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..++.++|+||++ .+|+.|++||+.++......+. +++.++++.+++.. .....+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 5677899999998 4677899999986432111222 22334444444421 233456689999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++. ++.|||++||+++.+. .||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999885 4689999999999885 799999999999999999887
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 6554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=374.75 Aligned_cols=217 Identities=31% Similarity=0.403 Sum_probs=187.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 10 ~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 35999999999975 3599999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC--------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|+||++.+++. |+.||+.++... .....+++.++++.+++.++++.. ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877654 999999875310 011233456677777776655543 468999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+||||++.+|++|||||||++||+.+++.+.+.|.++. . +.|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 2 689999999999885 79999999999999999887765
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
+.
T Consensus 237 ~~ 238 (265)
T PRK10575 237 RG 238 (265)
T ss_pred CH
Confidence 43
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=376.07 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~i 265 (426)
|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999975 35999999999999999999999999999999999999999999999999985 23345667889
Q ss_pred EEEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++. ++..|+.+|+.++......+. +++.++++..++.++. ...+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHHH
Confidence 99999986 456789999976421111222 2334455555555443 335679999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||+.+|++|||||||++||+.++..+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++.|+++++.++..
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 228 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTE 228 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChh
Confidence 99999999999999999999999999999999875 4689999999999985 799999999999999999877765543
Q ss_pred hh
Q 014366 418 SL 419 (426)
Q Consensus 418 ~l 419 (426)
..
T Consensus 229 ~~ 230 (271)
T PRK13638 229 AM 230 (271)
T ss_pred HH
Confidence 33
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=351.82 Aligned_cols=214 Identities=26% Similarity=0.427 Sum_probs=187.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+++.+++++|++. ..+++||||+++.||++||.|||||||||++++|++++.|++|.|++||.|.... +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6889999999873 3589999999999999999999999999999999999999999999999998764 5678999999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++-+..++. .|++|||.|.....+.+ +.++.+..+..++.+.+++ +..++|.||||||+|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-----------Rv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-----------RVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-----------HHhhhchhhHHHHHHHHHH
Confidence 998888885 59999998754332322 3445555666666666544 6789999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+++|++++|||||||||..+.+.+.+.+.+++. +++||+.||.+++++ .||||+++++|+++..|+++.+..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999975 899999999999997 899999999999999999876654
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=373.43 Aligned_cols=221 Identities=29% Similarity=0.406 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~~~~~ 261 (426)
.|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 48999999999753 599999999999999999999999999999999999974 69999999999987777778
Q ss_pred hcceEEEecCCCCC-cccHHHHHcCCCCCCC--CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 262 RRHVGLVSQDITLF-SGTVAENIGYRDLMTK--ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 262 r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~~--~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
++.++|+||++.+| ..|++||+.++..... .. .+++.++++.+++.+.+ +...+..+.+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHH
Confidence 88999999999866 5699999986432111 01 22344555555543322 12344567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999866789999999999885 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14247 234 TNP 236 (250)
T ss_pred cCC
Confidence 553
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=382.83 Aligned_cols=214 Identities=30% Similarity=0.433 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999975 3599999999999999999999999999999999999999999999999998653 345678899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+++ .|++||+.+.......+.. ++.++++..++.+ .......+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999999885 5999999753211112222 2333344444433 3344567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||++||+.+++.+.+.|+++. ++.|||++||+++.+. .||++++|++|++++.|+++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999875 4689999999999986 799999999999999999877653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=375.63 Aligned_cols=221 Identities=30% Similarity=0.468 Sum_probs=185.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 46999999999975 359999999999999999999999999999999999987 689999999998853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.++|+.++|+||++.+|+.|++||+.++....... ++++.++++.+++.. ++++.....+.+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 67788899999999999889999998754322111 223344455444422 22334556778999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeC-----------CEE
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDN-----------GKL 403 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~-----------G~i 403 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999999876789999999999885 7999999996 678
Q ss_pred EEeccccccccC
Q 014366 404 EELNRSTLLGSN 415 (426)
Q Consensus 404 ~e~g~~~~l~~~ 415 (426)
++.|+++++.++
T Consensus 243 ~~~~~~~~~~~~ 254 (269)
T PRK14259 243 VEFNETKKIFNS 254 (269)
T ss_pred EEeCCHHHHHhC
Confidence 999998877654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=363.08 Aligned_cols=204 Identities=37% Similarity=0.543 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 264 (426)
++++|++++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999753 369999999999999999999999999999999999999999999999999876653 246778
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|++|++.+|+. |++||+.++......+ .+++.++++..++.+..++ ...+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHH
Confidence 9999999999874 9999998643211111 2344556666666555444 4469999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 4689999999999986 6999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=376.61 Aligned_cols=221 Identities=28% Similarity=0.465 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i 265 (426)
|+++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999743 359999999999999999999999999999999999999999999999999852 2334577889
Q ss_pred EEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++ .+|+.|++||+.++........ +++.++++.+++.++. ...+.+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999997 4677899999986432111121 2344455555554433 345679999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||++.+|+++||||||++||+.++..+.+.|+++. ++.|||++||+++.+. .||++++|++|++++.|+++++.++..
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 229 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIE 229 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChH
Confidence 99999999999999999999999999999999885 3789999999999886 799999999999999999888766544
Q ss_pred hhh
Q 014366 418 SLV 420 (426)
Q Consensus 418 ~l~ 420 (426)
.+.
T Consensus 230 ~~~ 232 (275)
T PRK13639 230 TIR 232 (275)
T ss_pred HHH
Confidence 333
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=382.62 Aligned_cols=214 Identities=25% Similarity=0.434 Sum_probs=183.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 3789999999975 359999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+|+. |++||+.+.......+ .+++.++++..++ +...+....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL-----------RPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------chHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999865 9999997532211122 1233444444444 444455678999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||+|||+.+++.+.+.|+++.+++|||++||+++.+. .||||++|++|+++..|+++++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999877789999999999886 799999999999999999887643
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=387.39 Aligned_cols=214 Identities=30% Similarity=0.430 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.+|
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999753 5999999999999999999999999999999999999999999999999987543 46788999
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+++ .|++||+.+.......+.. ++.++++.+++ +........+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-----------~~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-----------ESKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhCCChhhCCHHHHHHHHHHHH
Confidence 9999999874 5999999753221122222 22233333333 333444567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||+|||+.+++.+.+.|+++. +++|||++||+++.+. .||||++|++|+++..|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999985 4789999999999986 799999999999999999887754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=363.55 Aligned_cols=203 Identities=36% Similarity=0.524 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999998876533 46778
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|++|++.+|+ .|++||+.++...... ..+++.++++..++.++.++. ..+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHHH
Confidence 999999999886 5999999764211111 124456667777766655443 469999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
|||+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999875 4789999999999886 699999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=378.87 Aligned_cols=221 Identities=26% Similarity=0.431 Sum_probs=181.2
Q ss_pred ccEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----C-C
Q 014366 186 GDVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----I-R 257 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----~-~ 257 (426)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997532 259999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 258 LDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
...+|+.++|++|++ .+|+.|++||+.++........++ +.+.++..++ | +...+..+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~---~~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------P---EDYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------C---hhHhcCChhhCCHH
Confidence 456778899999998 356779999998753211122222 2223333332 1 12345567899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 689999999999875 799999999999999999
Q ss_pred ccccccCc
Q 014366 409 STLLGSNH 416 (426)
Q Consensus 409 ~~~l~~~~ 416 (426)
++++.+++
T Consensus 235 ~~~~~~~~ 242 (289)
T PRK13645 235 PFEIFSNQ 242 (289)
T ss_pred HHHHhcCH
Confidence 87766544
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=369.53 Aligned_cols=220 Identities=25% Similarity=0.373 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999975 359999999999999999999999999999999999999999999999999877665543 4579
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC--------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK--------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|+||++.+|+. |++||+.++..... ...++ ....+.++++.+ |++........+||||||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAE-----EKDRIEEVLETI--GLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHH-----HHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHH
Confidence 999999999976 99999987532100 00010 011123333333 455555667789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 232 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD 232 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999999999999876789999999999986 6999999999999999998877654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=372.45 Aligned_cols=221 Identities=33% Similarity=0.494 Sum_probs=181.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--------H
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--------L 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--------~ 258 (426)
.++++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 48999999999753 5999999999999999999999999999999999999999999999999986432 2
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
..+++.++|+||++.+|+ .|++||+.++.. ......++..+. +.+.++.+ |++...+..+.+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456778999999999886 599999976421 011121111111 12233332 444444556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998754 689999999999985 699999999999999999887765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 234 ~~ 235 (250)
T PRK11264 234 DP 235 (250)
T ss_pred CC
Confidence 43
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=372.63 Aligned_cols=221 Identities=31% Similarity=0.453 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p---~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999975 359999999999999999999999999999999999997 3 59999999999863 3345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++..... .+. +++.++++..++.+++ .+.++..+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 67788999999999998899999987532111 111 2233445555543322 12345577899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999876789999999999885 79999999999999999998876
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 243 ~~~ 245 (259)
T PRK14274 243 SNP 245 (259)
T ss_pred hCC
Confidence 554
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=367.49 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=180.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999975 36999999999999999999999999999999999999999999999999988776544 56789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCC--CHHHHHHHHHHh-chHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTA-NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|++|++.+|+. |++||+.++...... ..+++.++++.. ++.+ .......+||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999875 999999875321111 011222223322 1222 2234567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+ +.|||+++|++|++++.|+++++..+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999875 478999999999877 47999999999999999999887654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=392.49 Aligned_cols=202 Identities=31% Similarity=0.507 Sum_probs=173.0
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcceEEEecCCCCCc-cc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQDITLFS-GT 278 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~-~t 278 (426)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...+ +++++|+||++.+|+ .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999987765543 457999999999986 49
Q ss_pred HHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 279 VAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 279 i~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
++||+.++......+ .+++.++++.+++.++.++ ...+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998753211122 2344555666666555544 4479999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 355 TSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|++||+.+++.+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 99999999999999999874 3689999999999875 79999999999999999988776553
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=362.74 Aligned_cols=206 Identities=30% Similarity=0.443 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+++|++++|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 3699999999999999999999999999999999999999999999999998766543 35788
Q ss_pred eEEEecCCCCC-cccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|+||++.+| ..|++||+.++......+.+ ++.++++..++.++.++ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 99999999875 56999999875321122222 33455565565554443 4579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
||++.+|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999875 4689999999999986 699999999999863
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=373.80 Aligned_cols=220 Identities=29% Similarity=0.403 Sum_probs=183.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC--CCCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ--NIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~--~~~~~ 259 (426)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999975 3599999999999999999999999999999999999987 4999999999986 34455
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCC--CH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI--DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~--~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
.++++++|+||++.+|+. |++||+.++...... +. +++.++++..++.+.+ ....+..+.+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 678889999999999975 999999864211110 11 2334445554443222 123455678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999866789999999999875 799999999999999999887
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 7654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=375.29 Aligned_cols=216 Identities=24% Similarity=0.382 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~ 263 (426)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999975 3599999999999999999999999999999999999999999999999998765543 3467
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.++|+||++.+|+. |++||+.++... ...+. +++.+.++..++.+. ......+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999875 999999764211 11121 223344454444443 34456799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 689999999999886 699999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=365.79 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=179.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i~ 266 (426)
|+++||+++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999988776544 466899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC-HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID-MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||++.+|+. |++||+.++....... .+...++++..+ +++...+....+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 9999998653221111 112233333322 12233445678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998753 689999999999987 69999999999999999988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=371.51 Aligned_cols=215 Identities=33% Similarity=0.490 Sum_probs=180.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----------
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---------- 257 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---------- 257 (426)
|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999975 36999999999999999999999999999999999999999999999999886542
Q ss_pred ---HHHHhcceEEEecCCCCCc-ccHHHHHcCCCCC-CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 258 ---LDSLRRHVGLVSQDITLFS-GTVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 258 ---~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
...+++.++|++|++.+|+ .|++||+.++... .... .+++.++++..++.++. +..+.+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhhc
Confidence 2356788999999999885 6999999864210 1111 12334445555554444 4455799
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+. .|||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 689999999999985 799999999999999
Q ss_pred eccccccccC
Q 014366 406 LNRSTLLGSN 415 (426)
Q Consensus 406 ~g~~~~l~~~ 415 (426)
.|+++++.++
T Consensus 228 ~g~~~~~~~~ 237 (252)
T TIGR03005 228 QGKPDEIFRQ 237 (252)
T ss_pred eCCHHHHhcC
Confidence 9998877654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=364.55 Aligned_cols=209 Identities=29% Similarity=0.388 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 261 (426)
.|+++|++++|++.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 24999999999999999999999999999999999999999999999999988766543 2
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++.++|+||++.+|+. |++||+.++...... ..+++.++++..++.++.++. +.+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3579999999998875 999999763211111 123456666777766655543 46899999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + +.|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999874 3 6899999999998888999999999999764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=370.81 Aligned_cols=216 Identities=29% Similarity=0.435 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 3789999999975 36999999999999999999999999999999999999999999999999987777777788899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCC-----CC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDL-----MT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~-----~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
|+||++.+++. |++||+.++.. .. ....+++.++++..++.++.+ ..+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999998865 99999987521 00 111234455566666655443 355799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999999875 4689999999999885 7999999999999999988776543
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=369.83 Aligned_cols=216 Identities=29% Similarity=0.383 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999975 35999999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+ +..|++||+.++...... ..+++.++++..++.++.+ ....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999987 467999999875321111 1233455566666555443 3557999999999999999
Q ss_pred hc------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 342 LY------QNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 342 l~------~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|+ .+|++|||||||++||+.+++.+.+.|+++. .+.|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 3689999999999886 7999999999999999988766
Q ss_pred ccC
Q 014366 413 GSN 415 (426)
Q Consensus 413 ~~~ 415 (426)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=372.68 Aligned_cols=223 Identities=28% Similarity=0.424 Sum_probs=187.0
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~ 257 (426)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 346999999999964 469999999999999999999999999999999999996 589999999999864 23
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
...+++.++|+||++.+|+.|++||+.++...... + ++++.++++..++.+.+ ++.++..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 45668889999999999988999999875321111 1 12344455555553322 234556788999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++||||++++|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999876789999999999885 799999999999999999887
Q ss_pred cccCc
Q 014366 412 LGSNH 416 (426)
Q Consensus 412 l~~~~ 416 (426)
+.+++
T Consensus 249 ~~~~~ 253 (267)
T PRK14237 249 IFTNP 253 (267)
T ss_pred HhcCC
Confidence 76543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=368.94 Aligned_cols=221 Identities=33% Similarity=0.517 Sum_probs=184.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~ 258 (426)
+.|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 358999999999753 599999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+|+.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+.+ ....+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence 5678889999999999889999999875321111 1 23344445555543222 1234456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999866789999999999875 6999999999999999998876
Q ss_pred ccC
Q 014366 413 GSN 415 (426)
Q Consensus 413 ~~~ 415 (426)
..+
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=351.23 Aligned_cols=178 Identities=35% Similarity=0.576 Sum_probs=164.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976433699999999999999999999999999999999999999999999999988655 5567888999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+ +.+||||||||++||||++.+|+
T Consensus 80 ~~q~~~~~~~tv~~~i-----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 80 LNQRPYLFDTTLRNNL-----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EccCCeeecccHHHhh-----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999988999997 36899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEec
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
+|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999886678999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=370.96 Aligned_cols=220 Identities=28% Similarity=0.434 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC--HH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR--LD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~--~~ 259 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999975 3599999999999999999999999999999999999985 7999999999886432 34
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.+++.++|+||++.+|+.|++||+.++......+. +++.++++.+++.+.+ ....+..+.+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 56778999999999988999999986422111222 2234445544442211 223455678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999999866789999999999885 799999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 243 ~ 243 (258)
T PRK14268 243 N 243 (258)
T ss_pred C
Confidence 4
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=371.66 Aligned_cols=218 Identities=32% Similarity=0.450 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC---------
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--------- 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~--------- 256 (426)
+.|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999975 3599999999999999999999999999999999999999999999999987532
Q ss_pred ----CHHHHhcceEEEecCCCCCcc-cHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCC
Q 014366 257 ----RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326 (426)
Q Consensus 257 ----~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~ 326 (426)
....+++.++|+||++.+|+. |++||+.++.. ..... .+++.++++..++.++. .+..+.
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 124567889999999999975 99999976321 01111 22334445554444332 134568
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
+||||||||++|||||+++|+++||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+. .||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999885 4789999999999987 69999999999999
Q ss_pred EeccccccccC
Q 014366 405 ELNRSTLLGSN 415 (426)
Q Consensus 405 e~g~~~~l~~~ 415 (426)
+.|+++++.++
T Consensus 232 ~~~~~~~~~~~ 242 (257)
T PRK10619 232 EEGAPEQLFGN 242 (257)
T ss_pred EeCCHHHhhhC
Confidence 99998876544
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=370.23 Aligned_cols=221 Identities=31% Similarity=0.474 Sum_probs=183.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC---CCC--CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL---YDP--LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~---~~p--~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999975 3599999999999999999999999999999999997 455 589999999998653 235
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... .++++.++++.+++.+++ .+..+..+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 667889999999999988999999764221111 112334445544443222 23345677899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999876789999999999885 79999999999999999998876
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 554
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=369.41 Aligned_cols=222 Identities=25% Similarity=0.443 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999975 369999999999999999999999999999999999999999999999999987765554 4569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC-------C------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT-------K------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~-------~------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+|+||++.+|+. |++||+.++.... . ..... .+ ....+.++++.+ |++...+.++.+||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 999999999875 9999998752100 0 00000 00 001122333333 4555556677899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++||||++.+|++|||||||++||+.+++.+.+.|.++.+ +.|||++||+++.+. .||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998753 689999999999985 699999999999999999
Q ss_pred ccccccC
Q 014366 409 STLLGSN 415 (426)
Q Consensus 409 ~~~l~~~ 415 (426)
++++.++
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 8877654
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=362.74 Aligned_cols=200 Identities=30% Similarity=0.480 Sum_probs=168.9
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999975 35999999999999999999999999999999999999999999999998763 467789999
Q ss_pred ecCCCC---CcccHHHHHcCCCCCC--------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 269 SQDITL---FSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 269 ~Q~~~l---f~~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||++.+ ++.|++||+.++.... ....+++.++++..++.++.++ ...+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHH
Confidence 999876 4579999998753211 0112345566666666655544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999875 5689999999999885 69999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=364.31 Aligned_cols=213 Identities=34% Similarity=0.450 Sum_probs=172.7
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r 262 (426)
|+++||+++|++.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997531 259999999999999999999999999999999999999999999999999877653 4667
Q ss_pred cceEEEecCCC--CC-cccHHHHHcCCCCCC--CCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHH
Q 014366 263 RHVGLVSQDIT--LF-SGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 ~~i~~v~Q~~~--lf-~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl 336 (426)
+.++|++|++. ++ ..|++||+.++.... ....+....+ ..+.++.+ |+. ...+..+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH-----HHHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 88999999993 44 469999997532111 1111111110 01223322 332 344556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998853 689999999999987 79999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=371.88 Aligned_cols=216 Identities=28% Similarity=0.387 Sum_probs=185.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999975 3599999999999999999999999999999999999999999999999999877777777889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCC--------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|+||++.+|. .|++||+.++.... ....+++.++++..++.++.+ ..+.+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHHH
Confidence 99999999875 59999997642100 011234455666666655543 35679999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+||||++.+|+++||||||++||+.+++.+.+.|.++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 689999999999875 79999999999999999887665
Q ss_pred c
Q 014366 414 S 414 (426)
Q Consensus 414 ~ 414 (426)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=382.18 Aligned_cols=220 Identities=28% Similarity=0.358 Sum_probs=182.4
Q ss_pred cEEEEeEEEEeCCC--------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH
Q 014366 187 DVKFCNISFKYADN--------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~ 258 (426)
.|+++|++++|+.. ...+++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2368999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEEecCCC--CCc-ccHHHHHcCCCCC-CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 259 D---SLRRHVGLVSQDIT--LFS-GTVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 259 ~---~~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
. .+|++++||||++. +++ .|+.+|+...... ...+ .+++.++++.+++.+ ......+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP----------EHYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh----------HHhcCCCcc
Confidence 3 45778999999984 665 4999988532100 0111 234455566666532 112335579
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
||||||||++|||||+.+|++||+||||++||..++..+++.|+++.+ +.|+|+|||+++.+. .||||++|++|+++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998853 689999999999996 69999999999999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
|.|+++++.+++
T Consensus 235 e~g~~~~~~~~p 246 (327)
T PRK11308 235 EKGTKEQIFNNP 246 (327)
T ss_pred EECCHHHHhcCC
Confidence 999988777653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=368.07 Aligned_cols=221 Identities=31% Similarity=0.465 Sum_probs=185.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999975 35999999999999999999999999999999999999997 69999999988643 345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC-----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++....... ++.+.++++..++.+.+ .+..+..+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence 6788899999999999889999998753211111 12233344444443322 23456678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998866789999999999986 68999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 553
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=373.24 Aligned_cols=222 Identities=32% Similarity=0.474 Sum_probs=184.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 369999999999753 59999999999999999999999999999999999997 699999999999853 334
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC-H----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-M----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++......+ . +.+.++++..++.+ ++....+.++.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 56678899999999999889999998642211111 1 11223333332211 223344567789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999985 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
.+++
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 6554
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=357.54 Aligned_cols=203 Identities=35% Similarity=0.523 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999752 2 39999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCC-C---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMT-K---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+. |++||+.++.... . ..++++.++++.+++.++.++.| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 9999998753211 1 12345666777777776665544 68999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++. .+.|+|++||+++.+. .||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 2689999999999985 69999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=367.42 Aligned_cols=205 Identities=32% Similarity=0.465 Sum_probs=177.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999975 35999999999999999999999999999999999999999999999998753 457789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|++|++.+|+ .|++||+.++.. ....+++.++++..++.++.+ ..+.+||||||||++|||||++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK--GQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc--chHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 599999987532 112345566666666655443 3557999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999873 3689999999999875 79999999999999988754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=365.68 Aligned_cols=215 Identities=30% Similarity=0.422 Sum_probs=178.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN------IRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~------~~~~~ 260 (426)
.|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999975 359999999999999999999999999999999999999999999999998731 12345
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCC-CCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
++++++|+||++.+|+. |++||+.+.. ....... +++.+.++..++ +..++..+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 67889999999999865 9999996421 1111111 223334444444 44444556799999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999999999998754 789999999999985 6999999999999999998776
Q ss_pred cc
Q 014366 413 GS 414 (426)
Q Consensus 413 ~~ 414 (426)
..
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 53
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=369.00 Aligned_cols=221 Identities=30% Similarity=0.443 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CC---CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DP---LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p---~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999975 35999999999999999999999999999999999995 36 599999999998643 334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... . ++++.++++.+++.+.+ .+..+..+.+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence 567889999999999989999999864211111 1 12334445555543222 22345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998866689999999999875 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 553
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=368.57 Aligned_cols=233 Identities=26% Similarity=0.396 Sum_probs=197.4
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+.+++..+++... ..+.......|+++|+++. + +++|+++||+|++||+++|+||||||||||+++|+|++
T Consensus 15 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 15 EGFGELLEKAKQENN---DRKHSSDDNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHHhccccccc---ccccCCCCCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566654443221 2222334457999999985 2 35999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.++| .++|++|++.+|+.|++||+.++... ...+....++.+++.+.+..+|.++++
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccc
Confidence 99999999988 39999999999989999999875421 233455667778888999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
.+++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+ +++.++.|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999998754 5555578999999999998899999999
Q ss_pred eCCEEEEeccccccccC
Q 014366 399 DNGKLEELNRSTLLGSN 415 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~~ 415 (426)
++|++++.|+++++.++
T Consensus 232 ~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 232 HEGSSYFYGTFSELQSL 248 (282)
T ss_pred ECCEEEEECCHHHHHhc
Confidence 99999999998777654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=368.41 Aligned_cols=223 Identities=27% Similarity=0.437 Sum_probs=185.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCCC--CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQNI--RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p---~~G~I~~~g~~i~~~--~~ 258 (426)
+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46999999999975 359999999999999999999999999999999999986 4 689999999998643 33
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
..+++.++|+||++.+|+ .|++||+.++..... .+ ++++.++++.+++.+++. ...+..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence 456888999999999987 599999976421111 11 123445555555543322 12344678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999876789999999999885 799999999999999999887
Q ss_pred cccCcc
Q 014366 412 LGSNHD 417 (426)
Q Consensus 412 l~~~~~ 417 (426)
+..++.
T Consensus 234 ~~~~~~ 239 (252)
T PRK14256 234 IFTTPE 239 (252)
T ss_pred HHhCCC
Confidence 766543
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=382.50 Aligned_cols=222 Identities=23% Similarity=0.298 Sum_probs=180.7
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD----PLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~----p~~G~I~~~g~~i~~~~~~~ 260 (426)
.|+++|++++|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999997532 359999999999999999999999999999999999997 48999999999998887655
Q ss_pred Hh----cceEEEecCCC--CCc-ccHHHHHcCC----CCC-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 261 LR----RHVGLVSQDIT--LFS-GTVAENIGYR----DLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 261 ~r----~~i~~v~Q~~~--lf~-~ti~eni~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
++ +.++||||++. +++ .|+.+++... ... .....+++.++++.+++.+.. ..++..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 43 36999999985 444 3777665321 100 011123455666666664211 1234466899
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||++|||||+.+|++||+||||++||+.++..+++.|+++.+ +.|+|+|||+++.+. .||||++|++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999853 689999999999985 799999999999999
Q ss_pred eccccccccCc
Q 014366 406 LNRSTLLGSNH 416 (426)
Q Consensus 406 ~g~~~~l~~~~ 416 (426)
.|+++++.+++
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99988877654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=365.73 Aligned_cols=220 Identities=26% Similarity=0.464 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4889999999975 36999999999999999999999999999999999999999999999999987766543 46789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCC-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+|+||++.+|+ .|++||+.+..... ..+.++.. ..+.++++.+ |++........+||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 99999999887 49999998653211 11111111 1122334333 4444455667899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+|++|||||||++||+.+++.+.+.++++. .++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999998875 4789999999998775 7999999999999999998876544
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=359.22 Aligned_cols=203 Identities=25% Similarity=0.458 Sum_probs=171.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999975 359999999999999999999999999999999999999999999999987742 45778999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.+.......+ .+++.+.++..++.+ .......+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999997642111111 223344444444444 33445689999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4689999999999885 69999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=370.86 Aligned_cols=222 Identities=32% Similarity=0.465 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~ 258 (426)
+.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999975 3599999999999999999999999999999999999984 89999999999864 234
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+|+.++|+||++.+|+.|++||+.++...... . .+++.++++.+++.+.+. +..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence 5678899999999999988999999864221111 1 123445555555543222 234567789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999875 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
..++
T Consensus 255 ~~~~ 258 (272)
T PRK14236 255 FTSP 258 (272)
T ss_pred hcCC
Confidence 6543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=359.61 Aligned_cols=203 Identities=35% Similarity=0.528 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i 265 (426)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999975 359999999999999999999999999999999999999999999999998853 2345667889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++.+|+ .|++||+.++.. ....+. +++.++++..++.+.+ .....+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHHHHHHHHH
Confidence 99999999886 599999976421 111222 2334444444544443 445579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998854 689999999999985 7999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=358.19 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=185.5
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhcc
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRH 264 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~~ 264 (426)
.+.|++|+|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999865 469999999999999999999999999999999999999999999999998765432 234677
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++|++|++.+|+.|++||+.+... .+.++..++++..++.+.++.+|.|+++.++..+.+||||||||++||||++.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSP---FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCc---CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 999999999998899999987642 23455667788889888899999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHH--HHHHHcC-CceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 345 NSSVLILDEATSALDSRSELLVRQ--AVDRLLG-HHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~--~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
+|+++||||||++||+.+++.+.+ .++.+.+ +.|+|++||+++.+..||++++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999988 5555543 689999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-48 Score=367.40 Aligned_cols=220 Identities=33% Similarity=0.473 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC-CCCHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ-NIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~-~~~~~~ 260 (426)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999975 3599999999999999999999999999999999999986 5999999999885 344556
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCCCC-----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++.++|+||++.+|+.|++||+.++....... .+++.++++..++.+.+ .+.++..+.+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 788899999999999899999998753211111 12233444444443322 233455678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++||||++.+|+++||||||++||+.+...+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|+++.+.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999999999999876789999999999886 699999999999999999877654
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=350.51 Aligned_cols=222 Identities=29% Similarity=0.437 Sum_probs=191.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.++++||+..|+.. ++|++|||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|+|++..++.+. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 48899999999863 69999999999999999999999999999999999999999999999999999987654 6679
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||||...+|+. ||+||+.++..... .++. ....+++..+.+| -+....+.++.+|||||+|.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~-~~~~-----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARR-DKEA-----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccc-cccc-----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999965 99999998643211 1000 1111334455556 46667778899999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+|++|+|||||.||-|.-.++|.+.++++++ +.||++|-++...+ +.+||.|||++|+|+..|+.++|.++++
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999999999974 46999999999876 5899999999999999999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=369.42 Aligned_cols=221 Identities=28% Similarity=0.413 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999975 359999999999999999999999999999999999864 7999999999998642 334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... . ++.+.++++..++.+. +....+..+.+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-------VKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-------hHHHHhcCcccCCHHHHH
Confidence 567889999999999988999999864211111 1 1223444444444211 112345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999866789999999999875 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 553
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=384.34 Aligned_cols=217 Identities=26% Similarity=0.407 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRR 263 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~ 263 (426)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999752 23 899999999999999999999999999999999999999999999986431 334577
Q ss_pred ceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+++|+||++.+|+ .|++||+.++.. ....+++.++++..++.++.++ .+.+||||||||++|||||
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHH
Confidence 8999999999996 599999988642 2234556667777766655544 4579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcchh
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~l 419 (426)
+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||++++|++|++++.|+++++.+++...
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~ 223 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMR 223 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchh
Confidence 999999999999999999999999999998753 689999999999875 79999999999999999999888776544
Q ss_pred hhc
Q 014366 420 VSA 422 (426)
Q Consensus 420 ~~~ 422 (426)
+.+
T Consensus 224 ~~~ 226 (352)
T PRK11144 224 PWL 226 (352)
T ss_pred hhh
Confidence 433
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=369.66 Aligned_cols=221 Identities=29% Similarity=0.440 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 59999999999753 59999999999999999999999999999999999986 489999999998853 3445
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
.+++.++|++|++.+|+.|++||+.++...... ..+++.++++.+++.+++. ...+..+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 678889999999999888999999875321111 1233445556666654432 223556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe---------CCEEEEe
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD---------NGKLEEL 406 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~---------~G~i~e~ 406 (426)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999999999999999876689999999999885 799999998 8999999
Q ss_pred ccccccccCc
Q 014366 407 NRSTLLGSNH 416 (426)
Q Consensus 407 g~~~~l~~~~ 416 (426)
|+++++.+++
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9998886554
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-48 Score=367.32 Aligned_cols=221 Identities=30% Similarity=0.425 Sum_probs=182.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++|++|+|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999975 369999999999999999999999999999999999997 479999999998854 2334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|++|++.+|+.|++||+.++...... . .+++.++++..++.+. .....+..+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-------TKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-------hHHHhccChhhCCHHHHH
Confidence 567889999999999989999999864321111 1 1233344444444211 012234567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999866789999999999875 69999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14251 235 IAP 237 (251)
T ss_pred hCC
Confidence 543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=370.39 Aligned_cols=218 Identities=33% Similarity=0.435 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
.|+++||+|+|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999631 24699999999999999999999999999999999999999999999999998876554
Q ss_pred H---HhcceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 260 S---LRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 260 ~---~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
+ +++.++|+||++. +++ .|++||+.+... ..... .+++.++++..++. +...+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR----------SEDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----------hhhhhCChhhC
Confidence 3 5678999999983 443 599999964311 00111 12333444444332 12345567899
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998753 689999999999986 799999999999999
Q ss_pred ecccccccc
Q 014366 406 LNRSTLLGS 414 (426)
Q Consensus 406 ~g~~~~l~~ 414 (426)
.|+++++.+
T Consensus 232 ~g~~~~~~~ 240 (265)
T TIGR02769 232 ECDVAQLLS 240 (265)
T ss_pred ECCHHHHcC
Confidence 999987765
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-48 Score=361.54 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=179.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999975 35999999999999999999999999999999999999999999999999998777777788999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCC--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||++.+|+.|++||+.+...... ...+++.+.++..++. ++..+..+.+||||||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999998899999976421111 1122333444444432 133455678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEe-CCEEEEeccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLD-NGKLEELNRSTL 411 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~-~G~i~e~g~~~~ 411 (426)
+|+++||||||++||+.+.+.+.+.|+++. .+.|+|++||+++.+..||++++|+ ++..+++|++++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 224 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYEL 224 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhcc
Confidence 999999999999999999999999999874 2689999999999988899999995 566677887763
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=367.94 Aligned_cols=214 Identities=28% Similarity=0.412 Sum_probs=183.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999975 369999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EecCCCCC-cccHHHHHcCCCCCC------C--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 268 VSQDITLF-SGTVAENIGYRDLMT------K--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~~------~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|++.++ ..|++||+.++.... . ...+++.++++.+++.+.. ...+.+||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHH
Confidence 99998754 579999998753100 0 1122345555555554443 34567999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998853 689999999999995 799999999999999999877654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=366.25 Aligned_cols=221 Identities=30% Similarity=0.445 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999975 3599999999999999999999999999999999999875 799999999998643 234
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
..++.++|+||++.+|+.|++||+.++...... + .+++.++++.+++.+.+ ....+.++..|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 567889999999999999999999875321111 1 12344555555543222 12334567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998866689999999999875 69999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=369.01 Aligned_cols=221 Identities=29% Similarity=0.455 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCCC--HHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIR--LDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~~--~~~ 260 (426)
-+++|++|+|++ +++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999974 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCCC--C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~--~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+++.++|+||++.+|+.|++||+.++....+. . ++++.++++..++.+++ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 67889999999999988999999864211111 1 12334455555543321 12345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998876789999999999986 69999999999999999988776
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
+++.
T Consensus 237 ~~~~ 240 (251)
T PRK14244 237 KNPQ 240 (251)
T ss_pred cCCC
Confidence 6543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=365.20 Aligned_cols=220 Identities=28% Similarity=0.477 Sum_probs=194.3
Q ss_pred cEEEEeEEEEeCCCC----------------------CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 187 DVKFCNISFKYADNM----------------------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~----------------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
.|+++||++-|+.+. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588889988886531 1247899999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHHh----cceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCC
Q 014366 245 CILVDDHDVQNIRLDSLR----RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQ 315 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~ 315 (426)
+|+++|.|+..++.+++| +++++|||...||+. ||.||+.||....+.+. ++..++++.++++.|-++.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999887653 579999999999975 99999999876555443 34567788888888888877
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-Hhc
Q 014366 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMA 392 (426)
Q Consensus 316 g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~ 392 (426)
.+|||||||||.|||||..+|+||++|||+|+|||--+.++++.|.++.+ .+||++||||++++ +..
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 69999999999999999999999999999999999999999999988753 68999999999876 689
Q ss_pred CEEEEEeCCEEEEeccccccccCcc
Q 014366 393 KRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 393 D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||..|++|+|++.|+|+++..++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCcc
Confidence 9999999999999999999888764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=346.19 Aligned_cols=172 Identities=47% Similarity=0.747 Sum_probs=161.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~~l--------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 81 LPQDDELFSGSIAENI--------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred ECCCCccccCcHHHHC--------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 9999999988999997 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999999998753 6899999999998888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=360.29 Aligned_cols=212 Identities=33% Similarity=0.508 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++. ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999742 239999999999999999999999999999999999999999999999876543 2567999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCC----CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLM----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |+.||+.++... ....++++.++++.+++.+++++.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 999999864211 1112345667777777777666654 68999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 999999999999999999999999999998743 689999999999885 69999999999999999988776554
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=379.33 Aligned_cols=222 Identities=23% Similarity=0.345 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~ 261 (426)
.|+++|++++|+. +...+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 2235999999999999999999999999999999999999996 9999999999988876654
Q ss_pred h----cceEEEecCC--CCCc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 262 R----RHVGLVSQDI--TLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 262 r----~~i~~v~Q~~--~lf~-~ti~eni~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
+ +.|+||||++ .+++ .|+.+|+..... ....+. +++.+.++.+++ |++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999998 4555 488888753211 011122 223333444333 2221 23456778999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEe
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+. .||||++|++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998854 689999999999986 7999999999999999
Q ss_pred ccccccccCc
Q 014366 407 NRSTLLGSNH 416 (426)
Q Consensus 407 g~~~~l~~~~ 416 (426)
|+++++.+++
T Consensus 244 g~~~~i~~~p 253 (330)
T PRK09473 244 GNARDVFYQP 253 (330)
T ss_pred CCHHHHHhCC
Confidence 9998887654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=384.47 Aligned_cols=212 Identities=27% Similarity=0.411 Sum_probs=176.8
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCCHHHH---h-c
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSL---R-R 263 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~----~i~~~~~~~~---r-~ 263 (426)
++.++|+. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+ ++...+...+ | +
T Consensus 29 ~~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 29 EILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 34455543 35899999999999999999999999999999999999999999999997 5655555443 3 5
Q ss_pred ceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
+++||||++.+|+ .|++||+.++......+ .++..++++.+++.++.+. .+.+||||||||++|
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~L 175 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGL 175 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 7999999999997 59999998763221122 2344556666666555544 447899999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++||||||||+||+.++..+++.|.++.+ ++|+|+|||+++.+ +.||||++|++|++++.|+++++..+
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999999999998753 68999999999987 57999999999999999999887655
Q ss_pred c
Q 014366 416 H 416 (426)
Q Consensus 416 ~ 416 (426)
+
T Consensus 256 p 256 (382)
T TIGR03415 256 P 256 (382)
T ss_pred c
Confidence 3
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=366.24 Aligned_cols=221 Identities=28% Similarity=0.440 Sum_probs=183.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999975 3699999999999999999999999999999999999984 899999999988643 234
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... . ++++.++++..++.+.+ ++..+.++.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 567889999999999989999999864211111 1 12234445555543322 12345577899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999775 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=365.01 Aligned_cols=221 Identities=29% Similarity=0.427 Sum_probs=184.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999975 3599999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
..++.++|++|++.+|+.|++||+.++....+. + ++.+.++++.+++.+. +.+.++..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHHH
Confidence 667889999999999988999999875321111 1 1223344444444322 223456678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999985 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 543
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-48 Score=377.57 Aligned_cols=206 Identities=29% Similarity=0.426 Sum_probs=173.8
Q ss_pred EEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC
Q 014366 195 FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 195 ~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 274 (426)
++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|+||++.+
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC
Confidence 35654 359999999999999999999999999999999999999999999999999865 345678889999999999
Q ss_pred Ccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 014366 275 FSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (426)
Q Consensus 275 f~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~il 349 (426)
|+. |++||+.+.......+ .+++.++++.+++.+.. ..+..+||||||||++|||||+.+|++|
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 875 9999997642211222 22344555555554433 3456799999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 350 ILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 350 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
||||||+|||+.+++.+.+.|+++. +++|||++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999885 4689999999999986 799999999999999999876643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=369.93 Aligned_cols=221 Identities=29% Similarity=0.476 Sum_probs=183.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45999999999975 359999999999999999999999999999999999997 689999999999854 234
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
..+++.++|+||++.+|+.|++||+.++...... ..+++.++++..++.+.+. ..++.++.+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHH
Confidence 5678899999999999888999999764211111 1234455555555432221 23345678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEE-EEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVF-LLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~-vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+++|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .|||++ +|++|++++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999866689999999999986 699975 57999999999987765
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
.+
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 44
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=353.72 Aligned_cols=204 Identities=33% Similarity=0.547 Sum_probs=175.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 468999999963 468999999999999999999999999999999999999999999999986543 35778999
Q ss_pred EecCCCCCcc-cHHHHHcCCCC-CC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDL-MT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~-~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.++.. .. ....+++.++++..++.+..++.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999864 99999976421 11 112345666777777777666654 68999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
+.+|+++||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 689999999999875 799999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=379.41 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD----PLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~----p~~G~I~~~g~~i~~~~~~~ 260 (426)
.|+++|++++|+. +...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++...+..+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22359999999999999999999999999999999999986 58999999999998877655
Q ss_pred H----hcceEEEecCCC--CCc-ccHHHHHcCCCC---CC-----C--CCHHHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 261 L----RRHVGLVSQDIT--LFS-GTVAENIGYRDL---MT-----K--IDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 261 ~----r~~i~~v~Q~~~--lf~-~ti~eni~~~~~---~~-----~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
+ ++.|+||||++. +++ .|+.+|+..... .. . ...+++.++++.+++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 4 247999999986 344 489999863110 00 0 0123455566666664211 11233
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
.+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999999853 689999999999995 7999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+|+|.|+++++.+++
T Consensus 235 G~ive~g~~~~i~~~p 250 (330)
T PRK15093 235 GQTVETAPSKELVTTP 250 (330)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999988776543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=366.99 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=185.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999975 3599999999999999999999999999999999999985 48999999998854 334
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++..... .+ .+.+.++++.+++.+.+. ...+..+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 567788999999999999999999976421111 11 223445566666543332 223456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe-----CCEEEEec
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD-----NGKLEELN 407 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~-----~G~i~e~g 407 (426)
||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999999876789999999999985 799999998 59999999
Q ss_pred cccccccCc
Q 014366 408 RSTLLGSNH 416 (426)
Q Consensus 408 ~~~~l~~~~ 416 (426)
+++++.+++
T Consensus 237 ~~~~~~~~~ 245 (259)
T PRK14260 237 VTTQIFSNP 245 (259)
T ss_pred CHHHHhcCC
Confidence 998776543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=355.35 Aligned_cols=227 Identities=27% Similarity=0.432 Sum_probs=190.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
-+++++++++|++- .+++||||++++||+++|+|||||||||++++|+|+|+|++|+|.++|+++..+++.+. |..|
T Consensus 4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 36799999999864 59999999999999999999999999999999999999999999999999999988765 5569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC---------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT---------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+.-||.+.+|+. ||.||+..+.... .....+..++.+ ...++++.+ |++...++...+||+||++|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999975 9999997652210 000001111111 112233332 66677777889999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+.|||||+.+|++|+||||.+||.+....++.+.|+++++ +.|+++|-||++.+. .||||+||+.|+++.+|+|++.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999974 489999999999986 7999999999999999999999
Q ss_pred ccCcchh
Q 014366 413 GSNHDSL 419 (426)
Q Consensus 413 ~~~~~~l 419 (426)
.+|+.=.
T Consensus 238 ~~dp~Vi 244 (250)
T COG0411 238 RNNPRVI 244 (250)
T ss_pred hcCHHhH
Confidence 9887543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=366.74 Aligned_cols=223 Identities=32% Similarity=0.447 Sum_probs=185.7
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~ 257 (426)
...|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ..
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 346999999999975 3599999999999999999999999999999999999863 69999999998854 23
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
...+++.++|+||++.+|+.|+.||+.++...... .++.+.++++.+++.+.+. ...+..+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHH
Confidence 34567889999999999988999999875321111 1233444555555543332 2344567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe---------CCEEE
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD---------NGKLE 404 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~---------~G~i~ 404 (426)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999999999999876789999999999885 799999998 89999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
+.|+++++.+++
T Consensus 249 ~~g~~~~~~~~~ 260 (274)
T PRK14265 249 EFSPTEQMFGSP 260 (274)
T ss_pred EeCCHHHHHhCC
Confidence 999998876553
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=360.14 Aligned_cols=214 Identities=34% Similarity=0.522 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|.+ |++||+.++......+ .+++..+++..++.++++. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-----------KPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999997642111111 2344555666666655554 4479999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++...+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999998753 789999999999885 69999999999999999877665543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=366.78 Aligned_cols=218 Identities=25% Similarity=0.366 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
.|+++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 23699999999999999999999999999999999999999999999999998754444
Q ss_pred HHhcceEEEecCCC--CCcc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCCh
Q 014366 260 SLRRHVGLVSQDIT--LFSG-TVAENIGYRDLM-TKID----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~-ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
..++.++|+||++. +++. |+.+|+.+.... .... .+++.++++.+++. +..+ ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 55678999999985 4444 899998652111 0111 23455666666662 3332 24479999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
|||||++||||++.+|++|||||||++||+.+++.+.+.|.++.+ +.|||++||+++.+. .||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998752 689999999999987 69999999999999999
Q ss_pred cccccccC
Q 014366 408 RSTLLGSN 415 (426)
Q Consensus 408 ~~~~l~~~ 415 (426)
+++++.++
T Consensus 233 ~~~~~~~~ 240 (267)
T PRK15112 233 STADVLAS 240 (267)
T ss_pred CHHHHhcC
Confidence 98877654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=367.41 Aligned_cols=221 Identities=28% Similarity=0.402 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC-HHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR-LDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~-~~~ 260 (426)
.|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999975 3699999999999999999999999999999999999986 7999999999987653 346
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCC-CCCHHHH----HHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDMERV----EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~-~~~~~~~----~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++.++|+||++.+|+.|++||+.++.... ..+.++. .+.++.+++.++ +.+.++..+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHHH
Confidence 688899999999999899999998753211 1122222 223333333221 2234456778999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998866689999999999875 799999999999999999887765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 252 ~~ 253 (276)
T PRK14271 252 SP 253 (276)
T ss_pred Cc
Confidence 43
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=358.84 Aligned_cols=213 Identities=35% Similarity=0.526 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999876542 4678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.+.......+ .+++.++++..++.++.+ ....+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999998653211111 223444555555544443 34579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++.+.+.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998753 689999999999875 6999999999999999998877654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=346.40 Aligned_cols=217 Identities=27% Similarity=0.453 Sum_probs=185.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.+..+|+.++|..+ ++++++||++++||+|++.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..|
T Consensus 4 ~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 58899999999764 69999999999999999999999999999999999999999999999999999987654 5569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCC------HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKID------MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
||+||++.+|.. ||+|||.........+ .++++..++..++.+ .-...+.+||||||+|+.|
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----------lr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----------LRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----------HhcCcccccccchHHHHHH
Confidence 999999999966 9999997532221111 112334444444444 3445678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChH-HHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLE-TVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||||+.+|+.++||||++|+||.+...|++.++.++. +--|++.-|+.. ++..|||.|++.+|++...|+|+++.+++
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999999999999874 678999999984 56899999999999999999999998885
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=363.25 Aligned_cols=221 Identities=29% Similarity=0.426 Sum_probs=182.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p---~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 5899999999975 369999999999999999999999999999999999975 5 59999999998854 2334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|++|++.+|+.|++||+.++...... . ++++.+.++.+++.+ ++....+..+.+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 567889999999999989999999864211111 1 122333344444322 1223345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||+|++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999999866689999999999985 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 236 ~~~ 238 (252)
T PRK14255 236 LNP 238 (252)
T ss_pred cCC
Confidence 654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=364.37 Aligned_cols=220 Identities=30% Similarity=0.473 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 259 (426)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 58999999999753 599999999999999999999999999999999999974 79999999998853 3345
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|++|++.+|+ .|++||+.++...... + ++.+.++++..++.+.+ ....+..+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 67888999999999887 5999999764211111 1 12334455555543221 2234456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe------CCEEEEe
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD------NGKLEEL 406 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~------~G~i~e~ 406 (426)
||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|+ +|++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999999866689999999999885 799999997 7999999
Q ss_pred ccccccccC
Q 014366 407 NRSTLLGSN 415 (426)
Q Consensus 407 g~~~~l~~~ 415 (426)
|+++++..+
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 998876544
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=361.47 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHH-hcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSL-RRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~~-r~~ 264 (426)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999975 35999999999999999999999999999999999994 7999999999999887766554 445
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCC-CC------CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCC-CCChH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLM-TK------ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~-~~------~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~-~LSgG 331 (426)
++|++|++.+|+. |++||+.+.... .. .+ .+++.++++..++.+ ...+.... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE----------EFLNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch----------hhcccccccCcCHH
Confidence 9999999999875 999999653210 00 11 122333444444321 12233344 59999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-h-cCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-M-AKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~-~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. . ||++++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999885 4689999999999986 4 89999999999999998
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87554
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-47 Score=361.39 Aligned_cols=205 Identities=29% Similarity=0.433 Sum_probs=172.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999975 3599999999999999999999999999999999999999999999999987642 245899
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+ .|++||+.++....... .+++.++++..++.+.. ...+.+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999998642211111 22344555555554443 345679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe--CCEEEEecccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD--NGKLEELNRST 410 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~--~G~i~e~g~~~ 410 (426)
+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|+ +|++++.++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999873 3789999999999885 799999998 59999987643
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=368.81 Aligned_cols=222 Identities=30% Similarity=0.448 Sum_probs=183.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~ 258 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +.
T Consensus 38 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 359999999999753 59999999999999999999999999999999999864 4999999999988643 23
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+|+.++|++|++.+|+.|++||+.++...... + .+++.++++..++.+.+ ....+..+..||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 3567889999999999988999999875321111 1 12333444444442211 1233456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+. .|||+++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999985 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
.+++
T Consensus 269 ~~~~ 272 (286)
T PRK14275 269 FTNP 272 (286)
T ss_pred HhCC
Confidence 6543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=362.26 Aligned_cols=220 Identities=30% Similarity=0.454 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~~ 259 (426)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 4789999999975 359999999999999999999999999999999999864 4899999999998653 345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++....+ .+ .+++.++++.+++.+++.. .++..+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 67889999999999998899999986532111 11 2334556666666554432 234567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++++|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999886 69999999999999999988776
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
.+
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 54
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=362.48 Aligned_cols=221 Identities=30% Similarity=0.436 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~--~~~~ 259 (426)
.++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999975 36999999999999999999999999999999999999874 8999999999864 2344
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCC-CHHHH----HHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMERV----EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~-~~~~~----~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|++|++.+|+. |++||+.++...... ..++. .+.++..++.+. +....+..+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-------VKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-------hhhhhcCCcccCCHHHH
Confidence 667889999999998874 999999764211111 12222 222233332221 11223456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999886 6999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
..++
T Consensus 235 ~~~~ 238 (252)
T PRK14272 235 FTNP 238 (252)
T ss_pred HhCc
Confidence 6553
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=362.84 Aligned_cols=221 Identities=22% Similarity=0.345 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDS- 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~-----i~~~~~~~- 260 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999975 359999999999999999999999999999999999999999999999998 76665543
Q ss_pred ---HhcceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHH
Q 014366 261 ---LRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (426)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGq 332 (426)
+++.++|+||++. ++. .|+.+|+.+... ....+..+... ...++++.+ |++ +.++..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 3567999999984 443 488999864210 00011111111 123445544 333 35567789999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998753 689999999999996 7999999999999999998
Q ss_pred cccccCc
Q 014366 410 TLLGSNH 416 (426)
Q Consensus 410 ~~l~~~~ 416 (426)
+++.+++
T Consensus 237 ~~~~~~~ 243 (258)
T PRK11701 237 DQVLDDP 243 (258)
T ss_pred HHHhcCC
Confidence 8776554
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=363.18 Aligned_cols=213 Identities=30% Similarity=0.386 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCC-----CH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNI-----RL 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~-----~~ 258 (426)
.|+++||+++|++ .++++++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999975 35999999999999999999999999999999999999986 49999999988643 23
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCC
Q 014366 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g 325 (426)
..+++.++|+||++.+|+ .|++||+.++.... ....+++.++++..++.+..+ ..+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CCc
Confidence 456778999999999887 59999998653110 001233455555555554443 355
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGK 402 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~ 402 (426)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+ ..||++++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999852 68999999999986 5799999999999
Q ss_pred EEEecccccc
Q 014366 403 LEELNRSTLL 412 (426)
Q Consensus 403 i~e~g~~~~l 412 (426)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999998876
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=355.11 Aligned_cols=207 Identities=25% Similarity=0.380 Sum_probs=178.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999975 36999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.+|+ .|++||+.++......+.+++.++++..++.++.+. .+.+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 599999975422112234566677777777665544 44799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .|||+++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999875 4689999999999885 799999999999999998754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-47 Score=364.10 Aligned_cols=214 Identities=26% Similarity=0.305 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--------ccEEEEcCEeCCCCCHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--------SGCILVDDHDVQNIRLD 259 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~--------~G~I~~~g~~i~~~~~~ 259 (426)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999999877777
Q ss_pred HHhcceEEEecCCC-CCcccHHHHHcCCCCCC----C-CC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 260 SLRRHVGLVSQDIT-LFSGTVAENIGYRDLMT----K-ID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~-lf~~ti~eni~~~~~~~----~-~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
.+++.++|+||++. +|+.|++||+.++.... . .. .+.+.++++.. |+++.++....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCH
Confidence 77888999999986 46789999998753110 0 11 12233344444 444455567789999
Q ss_pred HHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEE
Q 014366 331 GQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLL 398 (426)
Q Consensus 331 GqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl 398 (426)
|||||++|||||+ .+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998753 689999999999885 79999999
Q ss_pred eCCEEEEecccccccc
Q 014366 399 DNGKLEELNRSTLLGS 414 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~ 414 (426)
++|++++.|+++++.+
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999998877654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=363.28 Aligned_cols=222 Identities=29% Similarity=0.440 Sum_probs=185.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~--~~~ 258 (426)
+.|+++|++++|++. .+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 369999999999753 5999999999999999999999999999999999999985 8999999998753 234
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++...... + .+++.++++..++.+++. ...+..+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 4667889999999999989999999764211111 1 223445556665544332 234557789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC-----CEEEE
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN-----GKLEE 405 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~-----G~i~e 405 (426)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999864 3789999999999885 7999999999 99999
Q ss_pred eccccccccCc
Q 014366 406 LNRSTLLGSNH 416 (426)
Q Consensus 406 ~g~~~~l~~~~ 416 (426)
.|+++++.+++
T Consensus 237 ~~~~~~~~~~~ 247 (261)
T PRK14258 237 FGLTKKIFNSP 247 (261)
T ss_pred eCCHHHHHhCC
Confidence 99998887654
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=363.02 Aligned_cols=222 Identities=28% Similarity=0.424 Sum_probs=185.5
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC----
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN---- 255 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~---- 255 (426)
.+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4579999999999753 599999999999999999999999999999999999875 79999999987642
Q ss_pred CCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 256 IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 256 ~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
.....+++.++|++|++.+|+.|++||+.++...... .++++..+++.+++.+ ++.+.++..+.+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCH
Confidence 2345678889999999999988999999865211111 1234445555555432 222344566789999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|+|||+++.+. .|||+++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999999876789999999999985 7999999999999999998
Q ss_pred cccccC
Q 014366 410 TLLGSN 415 (426)
Q Consensus 410 ~~l~~~ 415 (426)
+++..+
T Consensus 245 ~~~~~~ 250 (265)
T PRK14252 245 DTIFIK 250 (265)
T ss_pred HHHHhC
Confidence 877643
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=353.94 Aligned_cols=205 Identities=31% Similarity=0.455 Sum_probs=173.7
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 262 (426)
++++|+++.|+++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999997531 4699999999999999999999999999999999999999999999999998766543 457
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCC-CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+.++|+||++.+|. .|+.||+.++.... ..+. +++.++++.+++.++.+. .+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----------YPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 88999999999987 69999998643211 1122 234455555555555444 4579999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
+||||++++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998753 6899999999997778999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=377.21 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=176.6
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcceEE
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGL 267 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~~i~~ 267 (426)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999753 34 999999999999999999999999999999999999999999999986432 2345778999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||++.+|+. |++||+.++....... .+++.+.++..++.+ ..+..+.+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-----------LLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999998764221111 123444555555444 4444568999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++..++.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 9999999999999999999999999998753 689999999999885 699999999999999999887776553
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=360.15 Aligned_cols=221 Identities=29% Similarity=0.383 Sum_probs=187.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.+.+++++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 5889999999975 3599999999999999999999999999999999999986 799999999998643 334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
.+++.++|+||++.+|..|++||+.++..... ...+++.++++.+++.+.+.. ..++.+.+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 56788999999999998899999987532111 112455666777766544322 23456789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe--------CCEEEEec
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD--------NGKLEELN 407 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~--------~G~i~e~g 407 (426)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 999999999999999999999999999999999999876789999999999875 799999996 89999999
Q ss_pred cccccccCc
Q 014366 408 RSTLLGSNH 416 (426)
Q Consensus 408 ~~~~l~~~~ 416 (426)
+++++.+++
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 988776543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=361.37 Aligned_cols=223 Identities=30% Similarity=0.421 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC------EeCCCCCHH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD------HDVQNIRLD 259 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g------~~i~~~~~~ 259 (426)
..|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 36999999999975 3599999999999999999999999999999999999999997666665 566555666
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCC-CH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~-~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|+||++.+|++ |++||+.++...... +. +++.++++..++.+++ ....+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 778899999999999875 999999865321111 12 2234444544443221 1223456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH-HhcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887678999999999998 47999999999999999998877
Q ss_pred ccCcc
Q 014366 413 GSNHD 417 (426)
Q Consensus 413 ~~~~~ 417 (426)
.+++.
T Consensus 240 ~~~~~ 244 (257)
T PRK14246 240 FTSPK 244 (257)
T ss_pred HhCCC
Confidence 76543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=355.40 Aligned_cols=212 Identities=33% Similarity=0.514 Sum_probs=180.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999974 28999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+ .|+.||+.++......+ .+++.++++.+++.+++++ .+.+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHHHHHHH
Confidence 999999885 69999998643211111 2334556666666665554 4478999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++|++++|||||++||+.+++.+.+.|+++.. ++|+|++||+++.+. .||++++|++|++++.|+++.+.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998753 789999999999886 6999999999999999988766544
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=337.98 Aligned_cols=171 Identities=55% Similarity=0.853 Sum_probs=159.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997643369999999999999999999999999999999999999999999999999887777777889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~~~~~~~~~t~~e~l--------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 81 VPQDPFLFSGTIRENI--------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EcCCchhccchHHHHh--------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 9999999988999997 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998876789999999999987799999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=365.99 Aligned_cols=221 Identities=31% Similarity=0.471 Sum_probs=184.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~ 258 (426)
..|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 35999999999975 359999999999999999999999999999999999986 6899999999998643 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCC------------C-----CHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK------------I-----DMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~------------~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
..+++.++|+||++.+|+.|++||+.++..... . ..+++.++++.+++.+ ++.+.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHh
Confidence 567788999999999998999999987521100 0 0122344444444322 333455
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEE-EEEe
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRV-FLLD 399 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i-~vl~ 399 (426)
+.++.+||||||||++|||||+++|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 667889999999999999999999999999999999999999999999999876689999999999985 79997 5789
Q ss_pred CCEEEEeccccccccC
Q 014366 400 NGKLEELNRSTLLGSN 415 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~ 415 (426)
+|++++.|+++++.++
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999998877654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=358.73 Aligned_cols=226 Identities=28% Similarity=0.418 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-C----CccEEEEcCEeCCCCCHHH
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-P----LSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p----~~G~I~~~g~~i~~~~~~~ 260 (426)
++++|++..|.... ..+++||||++++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+|+..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997532 369999999999999999999999999999999999998 4 5799999999999998765
Q ss_pred H---h-cceEEEecCCC--CCcc-cHHHHHc----CCCCC--CCCCHHHHHHHHHHhchHH---HHHhcCCCcccccCCC
Q 014366 261 L---R-RHVGLVSQDIT--LFSG-TVAENIG----YRDLM--TKIDMERVEHTARTANADE---FVRTLPQGYNTHIGPR 324 (426)
Q Consensus 261 ~---r-~~i~~v~Q~~~--lf~~-ti~eni~----~~~~~--~~~~~~~~~~~~~~~~l~~---~~~~lp~g~~t~~~~~ 324 (426)
+ | +.|++|||+|. |-+. ||.+-+. ..... .....++..+.++.+++.+ .++. .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~-----------Y 150 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS-----------Y 150 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhh-----------C
Confidence 3 3 46999999986 3332 6655553 21100 0011335566677777653 3344 4
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.+|||||||||.||.|++.+|++||.||||+|||...+.+|++.|+++.+ +.++|+||||+..+. .||||+||..|
T Consensus 151 PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 579999999999999999999999999999999999999999999999864 689999999999886 79999999999
Q ss_pred EEEEeccccccccCcchhhhcCc
Q 014366 402 KLEELNRSTLLGSNHDSLVSAGL 424 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~~l~~~~~ 424 (426)
+|+|.|+.++++.++..=+..||
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999998888755444443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=348.26 Aligned_cols=200 Identities=28% Similarity=0.456 Sum_probs=166.6
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcceEE
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGL 267 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~~i~~ 267 (426)
||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999864 34 99999999 999999999999999999999999999999999999876422 2345778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCC--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||++.+|+ .|++||+.++..... ...+++.+.++..++ +...+..+.+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-----------DHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-----------HhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999886 599999986532111 112233444444444 444445668999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998743 689999999999885 79999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=351.61 Aligned_cols=211 Identities=27% Similarity=0.473 Sum_probs=170.6
Q ss_pred EEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHh
Q 014366 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~r 262 (426)
+.++||+++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5689999999865 2579999999999999999999999999999999999999 99999999999875 34667
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCC--CCCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
+.++|+||++.+|+. |++||+.++.... ....+.... ....+ .++.+ ++.........+||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK----KRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHH----HHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 889999999999976 9999998642111 000111000 00111 12221 33334445678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccCh-HHH-HhcCEEEEEeCCEEEEec
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHL-ETV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~-~~~-~~~D~i~vl~~G~i~e~g 407 (426)
|||++++|+++||||||++||+.+++.+.+.++++. ++.|+|++||++ +.+ ..||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875 468999999998 455 589999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=330.58 Aligned_cols=218 Identities=32% Similarity=0.447 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----------
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---------- 256 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~---------- 256 (426)
.++++|++++|+.. .+|++|||+.++|+.+.|+|.|||||||+++||.=+..|++|.|.++|+.++-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999875 499999999999999999999999999999999999999999999999987522
Q ss_pred C---HHHHhcceEEEecCCCCCc-ccHHHHHcCC------CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCC
Q 014366 257 R---LDSLRRHVGLVSQDITLFS-GTVAENIGYR------DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326 (426)
Q Consensus 257 ~---~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~ 326 (426)
+ ...+|.+.++|||+..|++ .|+.||+.-+ .+. ....++.+..+.++++.+-.+..| .
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k-~ea~e~Ae~~L~kVGi~ek~~~YP-----------~ 151 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK-AEAIERAEKYLAKVGIAEKADAYP-----------A 151 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCH-HHHHHHHHHHHHHhCchhhhhcCc-----------c
Confidence 2 2346788999999999995 5999998532 211 111234455666777766665554 7
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
.|||||+||++|||||+.+|+++++|||||+|||+-.-++++.++++. +++|.++|||.+.+++ .+.+|+++++|.|.
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 999999999999999999999999999999999999999999999986 5899999999999997 58999999999999
Q ss_pred EeccccccccCcch
Q 014366 405 ELNRSTLLGSNHDS 418 (426)
Q Consensus 405 e~g~~~~l~~~~~~ 418 (426)
|+|+|+.++.++++
T Consensus 232 E~G~P~qvf~nP~S 245 (256)
T COG4598 232 EEGPPEQVFGNPQS 245 (256)
T ss_pred ccCChHHHhcCCCC
Confidence 99999999988754
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=336.14 Aligned_cols=172 Identities=47% Similarity=0.707 Sum_probs=158.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r~~i 265 (426)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999975 35999999999999999999999999999999999999999999999999987765 45678899
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|++|++.+|+ .|++||+.+. ||||||||++||||+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 99999999886 4999998542 99999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999998754 589999999999997 799999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=356.11 Aligned_cols=221 Identities=34% Similarity=0.453 Sum_probs=180.6
Q ss_pred cEEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-
Q 014366 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL- 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~- 258 (426)
.|+++||+|+|+++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999741 2469999999999999999999999999999999999999999999999999877654
Q ss_pred --HHHhcceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChH
Q 014366 259 --DSLRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGG 331 (426)
Q Consensus 259 --~~~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgG 331 (426)
..+++.++|++|++. +++ .|+.||+.+... ....+.++ ....+.+.++.+ |+++ ..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346788999999984 443 599999864211 00111111 111223344443 5542 456678899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999998753 689999999999986 799999999999999999
Q ss_pred cccccc
Q 014366 409 STLLGS 414 (426)
Q Consensus 409 ~~~l~~ 414 (426)
++++.+
T Consensus 236 ~~~~~~ 241 (268)
T PRK10419 236 VGDKLT 241 (268)
T ss_pred hhhccC
Confidence 887764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=334.25 Aligned_cols=170 Identities=38% Similarity=0.633 Sum_probs=156.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999999987654 566788999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.+|+. |++||+. ||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 9999998876 9999973 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
+++||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999885 4589999999999887 7999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=356.92 Aligned_cols=212 Identities=24% Similarity=0.326 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999643 369999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEecCCCC---CcccHHHHHcCCCCC-------C-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 267 LVSQDITL---FSGTVAENIGYRDLM-------T-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 267 ~v~Q~~~l---f~~ti~eni~~~~~~-------~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
|+||++.+ +..++++|+.++... . ....+++.++++..++.++.+ ....+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHH
Confidence 99999865 345789998653210 0 011233445556666655443 3557899999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999885 4689999999998875 79999777 89999999988765
Q ss_pred c
Q 014366 414 S 414 (426)
Q Consensus 414 ~ 414 (426)
+
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=355.07 Aligned_cols=217 Identities=21% Similarity=0.303 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHh
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~r 262 (426)
.|+++|++++| + +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 3599999999999999999999999999999999999999 999999999988632 2234
Q ss_pred cceEEEecCCC-CC-c-ccHHHHHcCCC--CCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDIT-LF-S-GTVAENIGYRD--LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~-lf-~-~ti~eni~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.++|+||++. .| + .|+.+|+.+.. ......++++.+.++.+++.++ ++.++..+.+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 34 3 48888875421 0011223445556665555331 12345567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .|||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998743 689999999999985 799999999999999999887765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 231 ~~ 232 (254)
T PRK10418 231 AP 232 (254)
T ss_pred CC
Confidence 43
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=379.23 Aligned_cols=220 Identities=35% Similarity=0.445 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEeCC---------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 014366 186 GDVKFCNISFKYAD---------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~---------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~ 256 (426)
.-++++|++++|.. +...+++||||++++||++||||+||||||||.|+|+|+++|++|+|.++|.+ .++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~ 357 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDL 357 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-ccc
Confidence 35889999999973 12468999999999999999999999999999999999999999999999987 333
Q ss_pred C---HHHHhcceEEEecCCC--CCc-ccHHHHHcCCCCCC-C----CCHHHHHHHHHHhchHH-HHHhcCCCcccccCCC
Q 014366 257 R---LDSLRRHVGLVSQDIT--LFS-GTVAENIGYRDLMT-K----IDMERVEHTARTANADE-FVRTLPQGYNTHIGPR 324 (426)
Q Consensus 257 ~---~~~~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~~~-~----~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~ 324 (426)
+ ....|+++-+|||||+ |-+ .||+++|.-....+ . ...+++.+.++.+++.+ ++.+ .
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r-----------y 426 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR-----------Y 426 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 2 3456788999999997 433 59999996432111 1 11233555566666654 4444 5
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.+||||||||+||||||+.+|+++++|||||+||+..+..|.+.|+++.+ +.|.|+||||++.++ .||||+||++|
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 579999999999999999999999999999999999999999999999864 689999999999997 69999999999
Q ss_pred EEEEeccccccccCcc
Q 014366 402 KLEELNRSTLLGSNHD 417 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~ 417 (426)
+|+|.|+.+.++++++
T Consensus 507 ~iVE~G~~~~v~~~p~ 522 (539)
T COG1123 507 RIVEEGPTEKVFENPQ 522 (539)
T ss_pred eEEEeCCHHHHhcCCC
Confidence 9999998888887753
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=344.47 Aligned_cols=196 Identities=30% Similarity=0.428 Sum_probs=163.9
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhcce
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRHV 265 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~~i 265 (426)
++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999975 359999999999999999999999999999999999999999999999999764432 2356789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|++|++.+|+ .|++||+.++....... .+++.++++..++.++. +....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999986 59999998642211111 23344555555554443 4456799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
||+++|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+..||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999875 368999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=341.80 Aligned_cols=190 Identities=25% Similarity=0.343 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~ 261 (426)
.+.++||+|.|+.+ .+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999853 4579999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
++.++|++|++.+|+. |++||+.++... . ..+....||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--------~----------------------~~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC--------K----------------------GNEFVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh--------c----------------------cccchhhCCHHHHHHHHHHH
Confidence 7789999999988864 999999764210 0 12345789999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEec-cChHHH-HhcCEEEEEeCCEEEEec
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIA-HHLETV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~~~~~-~~~D~i~vl~~G~i~e~g 407 (426)
||+.+|+++||||||++||+.+++.+.+.|+++.+ +.|+|+++ |+.+.+ ..||++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999998753 45666655 555666 579999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=387.04 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-cce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 265 (426)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 3599999999999999999999999999999999999999999999999998876665544 469
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|+||++.+|+. |++||+.++........+++.++++..+ ++........+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALG-----------CQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcC-----------CCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998865 9999998864211111233344444444 3334455678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|++|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999999875 4689999999999885 799999999999999998876643
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=352.16 Aligned_cols=221 Identities=23% Similarity=0.355 Sum_probs=178.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDS- 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~-----i~~~~~~~- 260 (426)
.|+++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 48999999999753 58999999999999999999999999999999999999999999999987 66555443
Q ss_pred ---HhcceEEEecCCC--CC-cccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHH
Q 014366 261 ---LRRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (426)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf-~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGq 332 (426)
+++.++|++|++. ++ ..|+.+|+.+... .......+. ...+.++++.+ |++ +..+..+.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 2457999999985 33 3488888853210 000011111 11233455555 343 45666788999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + +.|+|++||+++.+. .||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998874 2 689999999999987 6999999999999999998
Q ss_pred cccccCc
Q 014366 410 TLLGSNH 416 (426)
Q Consensus 410 ~~l~~~~ 416 (426)
+++.+++
T Consensus 234 ~~~~~~~ 240 (253)
T TIGR02323 234 DQVLDDP 240 (253)
T ss_pred HHHhcCC
Confidence 7776543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=329.45 Aligned_cols=217 Identities=28% Similarity=0.413 Sum_probs=190.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+.+|+|++-.++ .+++++||++++||.+||+||||||||||+|.|+|...|++|++.++|.++..++..++.++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999988654 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC-CcccHHHHHcCCCCCCC--CC--HHH--HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 268 VSQDITL-FSGTVAENIGYRDLMTK--ID--MER--VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 268 v~Q~~~l-f~~ti~eni~~~~~~~~--~~--~~~--~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+||+..+ |+.||+|-+.+|..... .. +++ ..+++..+++..+-.+ .-..|||||||||.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHH
Confidence 9999987 89999999999864221 11 222 5677888887776644 34689999999999999
Q ss_pred HhcC------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 341 ALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 341 al~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
.|.+ ++++|+||||||+||...+..+++..+++. ++..|+.|-||++... +||||++|++|+++..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9976 345899999999999999999999999985 4689999999999885 8999999999999999999988
Q ss_pred ccCcc
Q 014366 413 GSNHD 417 (426)
Q Consensus 413 ~~~~~ 417 (426)
.+.+.
T Consensus 229 lt~Et 233 (259)
T COG4559 229 LTDET 233 (259)
T ss_pred cCHHH
Confidence 77653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=392.68 Aligned_cols=219 Identities=28% Similarity=0.368 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCC---------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 187 DVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~~---------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
.|+++||+++|+.. ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 135899999999999999999999999999999999999999999999999987665
Q ss_pred HH---HHhcceEEEecCC--CCCc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchH-HHHHhcCCCcccccCCCC
Q 014366 258 LD---SLRRHVGLVSQDI--TLFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 258 ~~---~~r~~i~~v~Q~~--~lf~-~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g 325 (426)
.. .+|++|+||||++ .+++ .|+.||+.++...... . .+++.+.++.+++. +..+ ...
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CCc
Confidence 43 3567899999998 3665 4999999753211111 1 13344556666553 3333 345
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998753 689999999999986 799999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
+++.|+++++..++
T Consensus 542 iv~~g~~~~i~~~p 555 (623)
T PRK10261 542 IVEIGPRRAVFENP 555 (623)
T ss_pred EEEecCHHHHhcCC
Confidence 99999988876543
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=338.02 Aligned_cols=182 Identities=32% Similarity=0.485 Sum_probs=161.4
Q ss_pred cEEEEeEEEEeCCC----CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~ 260 (426)
.|+++||+|+|++. .+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+++.++|+||++.+|+. |++||+.++.. . .+||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---------------------~---------------~~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK---------------------L---------------RGLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH---------------------h---------------ccCCHHHHHHHHHH
Confidence 67889999999998864 99999854210 0 07999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-HH-HhcCEEEEEeCCEEEEec
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-TV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~~-~~~D~i~vl~~G~i~e~g 407 (426)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++ .+ ..||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999875 4789999999996 45 479999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=348.94 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHHhc-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSLRR- 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~r~- 263 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999975 3599999999999999999999999999999999998 6899999999999998776655444
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC-------CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCC-CCCh
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM-------TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSG 330 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~-------~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~-~LSg 330 (426)
.++|++|++.+|++ |+.+|+.+.... .+.+ .+++.++++.+++.+ +.++.... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999998876 899998753210 0011 112233344444321 23344444 5999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-h-cCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-M-AKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~-~D~i~vl~~G~i~e~g 407 (426)
|||||++||||++++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. . ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 4789999999999886 3 8999999999999999
Q ss_pred ccccc
Q 014366 408 RSTLL 412 (426)
Q Consensus 408 ~~~~l 412 (426)
+++.+
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 88743
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=320.62 Aligned_cols=209 Identities=29% Similarity=0.382 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 261 (426)
-|+++++++.-+.. .-.+|++|+|.|++||.+|||||||||||||+-+++|+..|++|+|.+.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888898887643 346999999999999999999999999999999999999999999999999999887643 3
Q ss_pred h-cceEEEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 R-RHVGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 r-~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
| +++|+|||...|.+ .|..||+.......+. ..+...+.++.+++.+-+.+ .+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 4 57999999999875 5999999876443321 12234455555555555444 457999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
||||||+...|+||+.||||-+||..|-++|.+.+-.+. .+.|.++||||+.....|||++-|++|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998775 36799999999999999999999999999853
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=337.26 Aligned_cols=181 Identities=28% Similarity=0.415 Sum_probs=160.0
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
.|+++|++++|++. .+++++++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48899999999752 246999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+.++|++|++.+|+. |++||+.++. .++ +||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~------------~~~------------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA------------LLR------------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH------------HHh------------------------cCCHHHhHHHHHHHH
Confidence 789999999988875 9999996421 000 799999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH-H-HhcCEEEEEeC-CEEEEec
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET-V-MMAKRVFLLDN-GKLEELN 407 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~D~i~vl~~-G~i~e~g 407 (426)
++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999875 36899999999984 4 68999999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=382.91 Aligned_cols=218 Identities=26% Similarity=0.400 Sum_probs=181.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~-~r~ 263 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+..+ +++
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999975 3599999999999999999999999999999999999996 8999999999997766543 457
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
.++||||++.+|+. |++||+.++.... ..+.++..+ .+.++++.+ |++...+....+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988864 9999998764211 112211111 122334443 455555667789999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||+.+|++|||||||++||+.++..+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999999874 4689999999999886 79999999999999999887654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=347.26 Aligned_cols=194 Identities=28% Similarity=0.384 Sum_probs=158.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe-cCCCCCc-ccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLFS-GTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~-~ti 279 (426)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++|++ |++.+|+ .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999986542 345677899998 5667764 599
Q ss_pred HHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC
Q 014366 280 AENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt 355 (426)
+||+.+.......+.++ +..+++..++.+ .......+||||||||++|||||+.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-----------LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99997542211222222 233344444433 333456789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 356 SALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998743 689999999999875 69999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=383.44 Aligned_cols=218 Identities=25% Similarity=0.358 Sum_probs=180.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999975 35999999999999999999999999999999999999999999999999987655443 35679
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC----CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT----KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++.+|+. |++||+.++.... ..+.++..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988864 9999998753211 111211111 122333333 4544556667899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
||+.+|++|||||||++||+.+++.+.+.|+++. .+.|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999999874 4689999999999885 79999999999999999887653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=384.53 Aligned_cols=218 Identities=22% Similarity=0.367 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999975 35999999999999999999999999999999999999999999999999998776544 34679
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC----CCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM----TKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~----~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+|+||++.+|+. |++||+.++... ... +.++..+ .+.+.++.+ |+....+....+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 999999875310 010 1111111 122333333 4444556677899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999875 4689999999999986 79999999999999999887654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=332.90 Aligned_cols=177 Identities=38% Similarity=0.564 Sum_probs=158.7
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3599999999999999999999999999999999999999999999999999887777778889999
Q ss_pred ecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 269 SQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 269 ~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|| +++.+++.++.+. .+.+||||||||++||||++++|++
T Consensus 79 ~q-----------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 79 PQ-----------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HH-----------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99 4555566555443 4579999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEec
Q 014366 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g 407 (426)
+||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ ..||++++|++|++++.|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998854 68999999999998 579999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=336.60 Aligned_cols=183 Identities=29% Similarity=0.441 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~~ 264 (426)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999975 3699999999999999999999999999999999999 58999999999999988766544 456
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
++|+||++.+|++ ++++|+ ... ..+||||||||++||||++
T Consensus 79 i~~v~q~~~~~~~~~~~~~l---------------------------~~~-----------~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL---------------------------RYV-----------NEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEEeecChhhccCccHHHHH---------------------------hhc-----------cccCCHHHHHHHHHHHHHh
Confidence 9999999998875 666655 011 1479999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH--hcCEEEEEeCCEEEEecccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM--MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~--~~D~i~vl~~G~i~e~g~~~ 410 (426)
.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 99999999999999999999999999998854 689999999999887 69999999999999999554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=347.04 Aligned_cols=209 Identities=27% Similarity=0.373 Sum_probs=174.0
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56788874 27999999999999999999999999999999999996 499999999999887777778889999
Q ss_pred ecCCCCC-cccHHHHHcCCCCCCCCC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 269 SQDITLF-SGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 269 ~Q~~~lf-~~ti~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
||++.++ ..|+++|+.++....... .+++.++++..++.+. ....+..||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 9998655 569999998763221111 2234445555554433 344568999999999999999997
Q ss_pred -------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 345 -------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 -------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|+++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999999885 4689999999999774 7999999999999999988766543
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-45 Score=346.33 Aligned_cols=201 Identities=28% Similarity=0.460 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 48999999999753 599999999999999999999999999999999999999999999986 24699
Q ss_pred EEecCCCCCc---ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 267 LVSQDITLFS---GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 267 ~v~Q~~~lf~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
|+||++.++. .|+++|+.+.. ....+++.++++.+++.++.+. ....||||||||++||||++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP---GTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALL 136 (251)
T ss_pred EeccccccccccChhHHHHHhccc---cccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999998764 48899986532 2345667778888888776654 34799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++ ++++.|+++++.++
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~ 210 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH 210 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC
Confidence 99999999999999999999999999988753 689999999999985 7999999965 79999998777654
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=332.41 Aligned_cols=172 Identities=31% Similarity=0.518 Sum_probs=155.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.|+++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999987763 3467789
Q ss_pred EEEecCC---CCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDI---TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~---~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|++|++ .++ ..|++||+.++.. ||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHHHHHHHH
Confidence 9999995 355 4699999965310 99999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999875 4689999999999886 6999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=337.26 Aligned_cols=197 Identities=22% Similarity=0.320 Sum_probs=169.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999975 35999999999999999999999999999999999999999999999999987543 456778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
++|++.+++ .|++||+.++..... .+.+++.++++..++.++.++ ...+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 599999976532211 234566777888777765544 4579999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHh-cCEEEEE
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMM-AKRVFLL 398 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~D~i~vl 398 (426)
|+++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999874 46899999999999964 5687776
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=335.61 Aligned_cols=195 Identities=26% Similarity=0.355 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999876543 456788999
Q ss_pred EecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.++ ..|++||+.+.... ...+++.++++..++.++.++ ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHAD--HSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred eccccccCCCcCHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 46999999875422 245667777787777655433 35789999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLL 398 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl 398 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+...+ ..||+++++
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998875 468999999998766 589999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=326.08 Aligned_cols=163 Identities=35% Similarity=0.469 Sum_probs=149.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|+++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 46999999999999999999999999999999999999999999999872 57999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+++.|++||+.++ .+.+||||||||++||||++++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred ECCCCccccccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999998888999999652 136899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
++||||||++||+.+++.+.+.++++ ++|+|++||+++....||++++|++|
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999999887 58999999999887899999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=343.18 Aligned_cols=192 Identities=32% Similarity=0.452 Sum_probs=160.8
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHH
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENI 283 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni 283 (426)
++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++|++.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999875433 2489999999987 5999999
Q ss_pred cCCCC--CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCC
Q 014366 284 GYRDL--MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (426)
Q Consensus 284 ~~~~~--~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~ 357 (426)
.++.. ....+. +++.+.++..++.+.. ...+.+||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 76421 111222 2234455555554443 345679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 358 LDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 358 LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+...+
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999874 2689999999999875 7999999999999999886554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=317.13 Aligned_cols=204 Identities=30% Similarity=0.474 Sum_probs=175.2
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++++. |.....++|+++||++.+||.++|+||||||||||+|.++-+.+|++|.+++.|++++.++++.+|++|+|+
T Consensus 5 e~kq~~--y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVG--YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHH--hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 334443 333335799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccHHHHHcCCCCC--CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 269 SQDITLFSGTVAENIGYRDLM--TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 269 ~Q~~~lf~~ti~eni~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
.|.|.||.+||+||+.|.... ...+.+.....++.+++.+ +.+..+..+||||||||+||+|-|.--|
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCC
Confidence 999999999999999885322 1234444455555555544 3455678899999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHH-HHhcCEEEEEeCCEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLET-VMMAKRVFLLDNGKLE 404 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~-~~~~D~i~vl~~G~i~ 404 (426)
+||+||||||+||+.+.+.|.+.|.++. ++..++.|||+.+. ++++|+++-+..|++-
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999999999999999998885 35799999999987 6799999999999873
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=342.56 Aligned_cols=213 Identities=22% Similarity=0.307 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh-cc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR-RH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~~r-~~ 264 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999975 35999999999999999999999999999999999994 69999999999998777665544 57
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCC----CCC---CCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCC-CCCChH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDL----MTK---IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRG-SSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~----~~~---~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g-~~LSgG 331 (426)
++|++|++.+++. |..+++.+... ... .+. +.+.+.++..+ +|.++.+ ..+ .+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~---~~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLT---RSVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcc---cCCCCCCCHH
Confidence 9999999987754 65555432100 000 010 11112222222 2222222 233 379999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh--cCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM--AKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~--~D~i~vl~~G~i~e~g~ 408 (426)
||||++||||++++|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999988754 6899999999999874 89999999999999998
Q ss_pred cccc
Q 014366 409 STLL 412 (426)
Q Consensus 409 ~~~l 412 (426)
++..
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 7644
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=343.51 Aligned_cols=203 Identities=28% Similarity=0.334 Sum_probs=164.9
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHhcceEEEecCCC-CC-c-
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LF-S- 276 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 276 (426)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988653 222357999999985 34 3
Q ss_pred ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEee
Q 014366 277 GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (426)
Q Consensus 277 ~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlD 352 (426)
.|+.||+.+....... ..+++.+.++.+++.+. ++..+..+.+||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4999998542111111 12234445555444310 13345567899999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 353 EATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++...+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 217 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999998753 689999999999985 79999999999999999988776543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=369.79 Aligned_cols=225 Identities=26% Similarity=0.354 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCC--CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL----SGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~----~G~I~~~g~~i~~~~~~~ 260 (426)
-++++|++..|..... .+++||||+|.+||++||||+|||||||+.+.|.|+.++. +|+|.++|.|+..++.++
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 5999999999999999999999999999999999999987 899999999998888765
Q ss_pred Hh----cceEEEecCCC-CC-c-ccHHHHHc----CCCCC-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 261 LR----RHVGLVSQDIT-LF-S-GTVAENIG----YRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 261 ~r----~~i~~v~Q~~~-lf-~-~ti~eni~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
+| +.|+|+||+|. .+ + .||.+-|. ..... .....++..+.++.+++.+-... +..+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 46999999986 34 4 37766663 11100 11123444556666666443332 3356899
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||+.||+||+.+|++||+||||++||+.++++|++.|+++. .+.++|+||||+..+. .||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 3689999999999986 799999999999999
Q ss_pred eccccccccCcchhh
Q 014366 406 LNRSTLLGSNHDSLV 420 (426)
Q Consensus 406 ~g~~~~l~~~~~~l~ 420 (426)
.|+++++++++..=+
T Consensus 236 ~G~~~~i~~~p~hpY 250 (539)
T COG1123 236 TGPTEEILSNPQHPY 250 (539)
T ss_pred ecCHHHHHhccCCcc
Confidence 999999888764433
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=333.89 Aligned_cols=195 Identities=24% Similarity=0.342 Sum_probs=164.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999975 359999999999999999999999999999999999999999999999998864 34567788999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.+++ .|++||+.++... ......+.++++..++.+.. +....+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHF-SPGAVGITELCRLFSLEHLI-----------DYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhc-CcchHHHHHHHHHcCCchhh-----------hCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999875 6999999875321 11223444555555443332 3345689999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~v 397 (426)
++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+..||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999874 46899999999999998987543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=376.00 Aligned_cols=214 Identities=29% Similarity=0.422 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999975 359999999999999999999999999999999999999999999999999865543 3457789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC--CC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM--TK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|+||++.+|+. |++||+.++... .. .+..+..+ .+.++++.+ |++......+.+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988865 999999875321 01 11111111 122334443 44444556778999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||||++|++|++++.+++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999875 4689999999999885 7999999999999877654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=381.96 Aligned_cols=219 Identities=28% Similarity=0.383 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCC---------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 187 DVKFCNISFKYAD---------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~---------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
.|+++|++++|+. +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 5899999999962 12469999999999999999999999999999999999994 8999999999987655
Q ss_pred HHH---HhcceEEEecCC--CCCc-ccHHHHHcCCCCCC--CCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCC
Q 014366 258 LDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLMT--KID----MERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 258 ~~~---~r~~i~~v~Q~~--~lf~-~ti~eni~~~~~~~--~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g 325 (426)
... ++++++|+||++ .+|+ .|++||+.++.... ..+ .+++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 433 467899999998 3665 59999997642110 011 123344455555431 1233456
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++.+. .||||++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999998753 689999999999886 799999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
+++.|+++++.+++
T Consensus 504 i~~~~~~~~~~~~~ 517 (529)
T PRK15134 504 VVEQGDCERVFAAP 517 (529)
T ss_pred EEEEcCHHHHhcCC
Confidence 99999988876654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=376.21 Aligned_cols=211 Identities=23% Similarity=0.283 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 48999999999753 5999999999999999999999999999999999999999999999998876666666677899
Q ss_pred EEecCCCC--C-------cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITL--F-------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~l--f-------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
|++|++.+ + ..|++||+.++. ...+++.++++..++.+..++ ...+||||||||++
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 145 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV----KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTL 145 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch----hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHH
Confidence 99998753 2 358999876431 123456667777766655444 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|+++..|+++++.+
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 689999999999886 799999999999999998776543
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=377.60 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=178.4
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcceEEE
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLV 268 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i~~v 268 (426)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999975 359999999999999999999999999999999999999999999999999876544 3456789999
Q ss_pred ecCCCCCc-ccHHHHHcCCCC-CCC--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 269 SQDITLFS-GTVAENIGYRDL-MTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 269 ~Q~~~lf~-~ti~eni~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
||++.+++ .|++||+.++.. ... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998775 599999987532 111 12221111 123344443 55555667788999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999999875 4689999999999885 79999999999999999877653
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=333.49 Aligned_cols=197 Identities=24% Similarity=0.329 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ..++.++
T Consensus 2 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 37899999999753 59999999999999999999999999999999999999999999999998652 2 2678899
Q ss_pred EEecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|++|++.++ ..|++||+.+........++++.++++..++.++.+. +..+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----------PFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 5699999976432222234556777777777665433 3468999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
|+++||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999999864 46899999999999887 99988854
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=332.09 Aligned_cols=195 Identities=25% Similarity=0.345 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987654 356778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.+|+ .|++||+.+.........+++.++++..++.++.+. ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999976432212123456677777777766544 34789999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~v 397 (426)
+++||||||++||+.+++.+.+.|+++. ++.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999874 468999999998433 4566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=318.54 Aligned_cols=159 Identities=39% Similarity=0.558 Sum_probs=147.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i~ 266 (426)
|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 599999999999999999999999999999999999999999999999999877653 4567899
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|++| ||||||||++||||++++|
T Consensus 79 ~~~q---------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 79 MVYQ---------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEe---------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
+++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999885 4689999999999875 699999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=334.29 Aligned_cols=198 Identities=23% Similarity=0.308 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 59999999999753 599999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC-CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|++|++.+++. |++||+.+....... ..+...+.++..++.+. .+....+||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998875 999999764221111 12333444554444333 344567999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998864 4689999999999885 7999999864
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=383.82 Aligned_cols=221 Identities=26% Similarity=0.334 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC----------
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ---------- 254 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~---------- 254 (426)
.|+++|++++|+.. ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999642 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEecCC--CCCc-ccHHHHHcCCCCC-CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 255 NIRLD---SLR-RHVGLVSQDI--TLFS-GTVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 255 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~eni~~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
..+.. .+| +.|+||+|+| .+++ .||+||+.++... ...+. +++.++++.+++.+. +..+.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 12222 233 4799999998 5776 5999999864211 01122 234444555444210 12334
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEe
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++. + ++|||+|||+++.+. .||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5668999999999999999999999999999999999999999999999985 3 689999999999885 799999999
Q ss_pred CCEEEEeccccccccC
Q 014366 400 NGKLEELNRSTLLGSN 415 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~ 415 (426)
+|++++.|+++++..+
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999988776543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=373.95 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=176.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~-~r~~ 264 (426)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999975 3599999999999999999999999999999999999987 7999999999998766544 4567
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCC--C--CCHHHHHHHHHHhchHHHHHhcCCCccccc-CCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMT--K--IDMERVEHTARTANADEFVRTLPQGYNTHI-GPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~-~~~g~~LSgGqkQRl~i 338 (426)
++||||++.+|+. |++||+.++.... . .+.++..+ .+.++++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988864 9999998753211 0 11111111 122333333 333322 34467999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|+++.+
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999875 4689999999999886 6999999999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=375.82 Aligned_cols=220 Identities=29% Similarity=0.372 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~~~ 259 (426)
.|+++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999742 23699999999999999999999999999999999999987 799999999998776543
Q ss_pred H---Hh-cceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 260 S---LR-RHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 260 ~---~r-~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
+ +| ++++|+||++. +++ .|+++|+.+... ....+ .+++.++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2 33 57999999985 444 489999863210 00111 23445556665553311 012335679
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .+.|||+|||+++.+. .||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999874 2689999999999886 79999999999999
Q ss_pred Eecccccccc
Q 014366 405 ELNRSTLLGS 414 (426)
Q Consensus 405 e~g~~~~l~~ 414 (426)
+.|+++++.+
T Consensus 237 ~~g~~~~~~~ 246 (529)
T PRK15134 237 EQNRAATLFS 246 (529)
T ss_pred EeCCHHHHhh
Confidence 9998876644
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=334.00 Aligned_cols=386 Identities=23% Similarity=0.268 Sum_probs=285.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHH--HHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMC--ESARFRRLAH 80 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~--~~~~~~~~~~ 80 (426)
+++.|+||.+.++.++.+.+.++...+...+..+.....++...++.+..+..+.|.++++....-.+ ..+.|....+
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 46789999999999888888888888888888899999999999999999999999999997543221 1122222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 81 SDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
...+...+...+......+.+++.++. +....|+ ...++-+.....++++...++-.|+.++....+.+..+.+|.
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~l---IGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~ 296 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGL---IGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAF 296 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 111111111111111111222211111 1111112 223333444445566666677889999999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++.++-..|+.. +-+.+.+.+ .-..|+++||.|.|++.. .-+..||++|++||++-|+|.|||||||++++|.|+|
T Consensus 297 ~kiakle~~~~~a-~~~~~q~~p-~~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 297 NKIAKLELAPYKA-DFPRPQAFP-DWKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred HHHHHhhcCCccc-cCCCCCcCC-cccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc
Confidence 9999875433221 111111122 235799999999998753 4688999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|++||++++.-+++++|+-++-||.|.+||+.++- +....+++.+...++...+.+...-....+
T Consensus 374 ~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~-------~e~~as~q~i~~~LqrLel~~ktsl~d~~f-- 444 (546)
T COG4615 374 QPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-------PEGKASPQLIEKWLQRLELAHKTSLNDGRF-- 444 (546)
T ss_pred CCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-------CccCCChHHHHHHHHHHHHhhhhcccCCcc--
Confidence 99999999999999999999999999999999999986541 112246777888888777766543322111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH-c-CCceEEEeccChHHHHhcCEEEE
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-L-GHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~-~~~tvi~itH~~~~~~~~D~i~v 397 (426)
....||.|||+|+|+--|++-+.||+++||=-+--||.-++.+.+.+..+ + .||||+.||||-.....|||++.
T Consensus 445 ----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~ 520 (546)
T COG4615 445 ----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520 (546)
T ss_pred ----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHH
Confidence 12579999999999999999999999999999999999999998887544 3 48999999999999999999999
Q ss_pred EeCCEEEEec
Q 014366 398 LDNGKLEELN 407 (426)
Q Consensus 398 l~~G~i~e~g 407 (426)
|++|+++|.-
T Consensus 521 ~~~G~~~e~t 530 (546)
T COG4615 521 MRNGQLSELT 530 (546)
T ss_pred HhcCceeecc
Confidence 9999999864
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=350.06 Aligned_cols=377 Identities=19% Similarity=0.216 Sum_probs=296.7
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 014366 7 VISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCEL 86 (426)
Q Consensus 7 ~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 86 (426)
-+...+..++++-+++.-++..++++++.+.+.+.....+.+...+...-++.+.|-.++.|+.+.++.++.........
T Consensus 203 ~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~ 282 (604)
T COG4178 203 GIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNW 282 (604)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666678899999999999999999999999999999999999999999988887766554433
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014366 87 LKKRKMKALIPQTVQLIYF-GALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~ 165 (426)
.+......-+..+...... ..++-+.+++-....|+++.|.++.....+..+...+..+...+..++.-++...|+.++
T Consensus 283 ~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f 362 (604)
T COG4178 283 RRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEF 362 (604)
T ss_pred HHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222211111111111111 122223344555678999999999999999999999999999999999999999999988
Q ss_pred hcCc------ccccCCCCC-CCC-CCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 166 TKFK------SKVIEKPDA-VSL-DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 166 l~~~------~~~~~~~~~-~~~-~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.+.- ++....... ... ......|+++|++..-|++. ..+++.||++++||.+-|.||||||||||+|.|+|
T Consensus 363 ~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 363 RQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred HHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 6321 111111000 000 00146799999999998764 79999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCc
Q 014366 238 LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317 (426)
Q Consensus 238 ~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 317 (426)
+.|--+|+|.+-. -..+-|+||.|++..||.||-++|++..++.+++++.+++.++++.++++++.+ .
T Consensus 442 LWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~ 509 (604)
T COG4178 442 LWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-E 509 (604)
T ss_pred cCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-c
Confidence 9999999987531 134789999999999999999999887655889999999999999999998753 2
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEE
Q 014366 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 318 ~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~v 397 (426)
+ +=...||+|||||+++||.++++|++++|||+||+||++++..+.+.+++...+.|+|-|+||.......++.+-
T Consensus 510 ~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~ 585 (604)
T COG4178 510 D----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLE 585 (604)
T ss_pred C----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhhee
Confidence 2 234689999999999999999999999999999999999999999999998788999999999998887776665
Q ss_pred EeC
Q 014366 398 LDN 400 (426)
Q Consensus 398 l~~ 400 (426)
+.+
T Consensus 586 l~~ 588 (604)
T COG4178 586 LLD 588 (604)
T ss_pred ecc
Confidence 543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=356.96 Aligned_cols=214 Identities=34% Similarity=0.447 Sum_probs=181.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-cce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 265 (426)
-++++|++++|++- ++|+++||++++||++||+|+||||||||+|+|+|.|+|++|+|.+||++..-.++.+-+ ..|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48899999999864 699999999999999999999999999999999999999999999999999877776654 569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC----CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+.|+||..|++. ||.|||.+++.... .+..+..+.++ +.++.+ |++........+||.||||.|+|||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHHH
Confidence 999999999865 99999988764322 23333332222 233333 2211245567899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|+..+++++|||||||+|+....+.+.+.+++++ ++.++|+||||++++. .||||.||+||+.+..++.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999997 5789999999999885 7999999999999987763
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=333.25 Aligned_cols=201 Identities=30% Similarity=0.390 Sum_probs=161.3
Q ss_pred EEEEeEEEEeCCC-----CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc--CE--eCCCCCH
Q 014366 188 VKFCNISFKYADN-----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD--DH--DVQNIRL 258 (426)
Q Consensus 188 i~~~~v~~~y~~~-----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~--g~--~i~~~~~ 258 (426)
|+++|++++|+.. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1369999999999999999999999999999999999999999999998 42 5554444
Q ss_pred HH---H-hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 259 DS---L-RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 259 ~~---~-r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
.. + ++.++|+||++.+++. |++||+.+.......+ .+++.++++..++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 32 2 4579999999998864 9999997532111111 12333344444443221 234568999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEE
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLL 398 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl 398 (426)
||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999875 3689999999999885 79999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=373.60 Aligned_cols=220 Identities=24% Similarity=0.350 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCC-CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCH-HHHhc
Q 014366 187 DVKFCNISFKYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRL-DSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~g~~i~~~~~-~~~r~ 263 (426)
.|+++|++++|+. +..++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999953 12459999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred ceEEEecCC---CCCc-ccHHHHHcCCCC--CCC---CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHH
Q 014366 264 HVGLVSQDI---TLFS-GTVAENIGYRDL--MTK---IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQR 333 (426)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eni~~~~~--~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqk 333 (426)
.++|++|++ .+|+ .|+.||+.++.. ... .+.++. ...+.++++.+ |++ ........+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3664 599999986421 100 011111 11233444444 443 245567789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+. .|||+++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999875 4789999999999885 799999999999999998877
Q ss_pred cc
Q 014366 412 LG 413 (426)
Q Consensus 412 l~ 413 (426)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=374.55 Aligned_cols=220 Identities=24% Similarity=0.422 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCC---CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc-CEe---CCCCC--
Q 014366 187 DVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD-DHD---VQNIR-- 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~-g~~---i~~~~-- 257 (426)
.|+++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 22469999999999999999999999999999999999999999999996 643 33222
Q ss_pred -HHHHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 258 -LDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 258 -~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
...++++++|+||++.+|+ .|++||+.+.... ... .+++.++++..++.+. ..+...+....+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 1245677999999998886 4999999753111 111 1223344444443210 0001234566899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + +.|||+|||+++.+. .|||+++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999874 3 689999999999886 799999999999999988
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 512 ~~~~~ 516 (520)
T TIGR03269 512 PEEIV 516 (520)
T ss_pred HHHHH
Confidence 76543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=372.68 Aligned_cols=213 Identities=23% Similarity=0.412 Sum_probs=172.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEc----------------
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVD---------------- 249 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~---------------- 249 (426)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcceEEEecC-CCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhch
Q 014366 250 -------DHDVQ-------NIR---LDSLRRHVGLVSQD-ITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANA 306 (426)
Q Consensus 250 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l 306 (426)
|.++. ..+ ...+|+.++|+||+ +.+|+ .|++||+.++......+ .+++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12456789999998 56776 59999997642111112 1234455555555
Q ss_pred HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEecc
Q 014366 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAH 384 (426)
Q Consensus 307 ~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH 384 (426)
.+.. .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|||+|||
T Consensus 159 ~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 5444 34557999999999999999999999999999999999999999999999874 3 689999999
Q ss_pred ChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 385 HLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 385 ~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+++.+. .||+|++|++|++++.|+++++.
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 999986 79999999999999988876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=370.87 Aligned_cols=212 Identities=17% Similarity=0.328 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998763 38999999999999999999999999999999999999999999999998865443 3456789
Q ss_pred EEEecCC---CCCc-ccHHHHHcCCCCCC--------C-CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChH
Q 014366 266 GLVSQDI---TLFS-GTVAENIGYRDLMT--------K-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGG 331 (426)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eni~~~~~~~--------~-~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgG 331 (426)
+|+||++ .+|+ .|++||+.++.... . ...... ...+.+.++.+ |+. ........+||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGG 413 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChH
Confidence 9999984 5675 49999998753210 0 011110 11123344443 453 3456677899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|||+|||+++.+. .|||+++|++|++++.++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999999874 4789999999999885 7999999999999988865
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=325.18 Aligned_cols=176 Identities=34% Similarity=0.490 Sum_probs=146.6
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcceEEEecCC--CCCcc
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHVGLVSQDI--TLFSG 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i~~v~Q~~--~lf~~ 277 (426)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|+||++ .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 22345677899999998 46778
Q ss_pred cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeec
Q 014366 278 TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDE 353 (426)
|++||+.++......+. +++.++++..++.++.++ ...+||||||||++|||||+.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421111222 234555666666555444 457999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH
Q 014366 354 ATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET 388 (426)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~ 388 (426)
||++||+.+++.+.+.|+++. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999999875 46899999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=405.00 Aligned_cols=218 Identities=25% Similarity=0.394 Sum_probs=186.7
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|+++.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+.|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996433569999999999999999999999999999999999999999999999999864 455678899
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+||++.+|+. |++||+.++......+. +++.+.++..++. ...+....+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-----------HKRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHHH
Confidence 999999999865 99999987432222222 2344445554444 4445566899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|+++||||||||||+.+++.+.+.|+++++++|||++||+++.+. .||||++|++|+++..|+++.|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999999877899999999999986 7999999999999999998877654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=312.66 Aligned_cols=208 Identities=27% Similarity=0.409 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.+.+++++.+|++....+|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.+||.++..-.. .-|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 466789999998765669999999999999999999999999999999999999999999999999876432 248
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|||++.|++ .|+.||+.||......++.+ ..+.+..+++.++- .....+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-----------~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-----------HKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-----------ccceEeecchHHHHHHHHHH
Confidence 9999999986 59999999986655544432 23334444444433 33568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEecccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRST 410 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~ 410 (426)
|..+|++|+||||+++||.-+++.+++.|-++. .++.+++|||++++.- .++|++||+. |+|++.-+++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999998874 3789999999998875 7999999985 7998875554
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=332.24 Aligned_cols=188 Identities=34% Similarity=0.467 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeCCCC-------CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADNM-------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~-------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
-++++|+++.|+... ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 488999999997432 26899999999999999999999999999999999999999999999999977654
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
.....+++.+.++.+++.+ ++.+.| .+||||||||++|
T Consensus 82 ------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~I 120 (268)
T COG4608 82 ------------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGI 120 (268)
T ss_pred ------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHH
Confidence 1112456788888888754 566655 7999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|+++++|||+|+||...+.++.+.|.++.+ +.|.++||||++.++ .||||.||..|+|+|.|+.++++.+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 9999999999999999999999999999999998863 679999999999998 6999999999999999999888876
Q ss_pred cc
Q 014366 416 HD 417 (426)
Q Consensus 416 ~~ 417 (426)
+.
T Consensus 201 p~ 202 (268)
T COG4608 201 PL 202 (268)
T ss_pred CC
Confidence 53
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=329.29 Aligned_cols=195 Identities=23% Similarity=0.316 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~----- 90 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G----- 90 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c-----
Confidence 678889999976 3699999999999999999999999999999999999999999999999875311 1
Q ss_pred EecCCCC-CcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITL-FSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~l-f~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+...+ .+.|++||+.++......+.+ ++.++++..++ +........+||||||||++||||+
T Consensus 91 --~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 91 --LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-----------GDFIDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred --ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHHHHHH
Confidence 11222 246999999764321111222 22333333333 3333445679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999874 3589999999999885 79999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=303.34 Aligned_cols=216 Identities=31% Similarity=0.475 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC--CCCC----HHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--QNIR----LDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i--~~~~----~~~ 260 (426)
+|+++|++|.|+.. .+|.||+|+-+.||.+.+.||||+|||||++.|.-+.-|.+|+..+.|... +..+ ..+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 58999999999865 599999999999999999999999999999999999999999999988643 3222 346
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+|+.+|+|||..+|++. ||.||+.-.. ...+.+ ..+..+.+++..+.++.+++| -.|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999965 9999985321 111122 234566778888888888877 589999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|+||||||+.+|++|++||||++|||+-...+.+.|+++.+ +-|-++|||..+..+ .|.+|+.|++|+|+|.|+..-+
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999999975 689999999999986 6999999999999999987765
Q ss_pred ccC
Q 014366 413 GSN 415 (426)
Q Consensus 413 ~~~ 415 (426)
-+.
T Consensus 229 t~p 231 (242)
T COG4161 229 TEP 231 (242)
T ss_pred cCc
Confidence 443
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=371.93 Aligned_cols=216 Identities=33% Similarity=0.464 Sum_probs=183.1
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH---
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~--- 261 (426)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 2469999999999999999999999999999999999999999999999999988776553
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++.++|+||++.+|+. |+.||+.+.......+ +++..+.++.+ |+++.++..+.+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~l-----------gl~~~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRL-----------GLEDRVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CChhhhcCCcccCCHHHHHH
Confidence 5689999999999964 9999997632111111 12233334444 44444555667999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+..|||+++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999999875 478999999999988889999999999999999987654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=329.03 Aligned_cols=189 Identities=32% Similarity=0.449 Sum_probs=157.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC---CcccHHHHHcCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL---FSGTVAENIGYR 286 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~ti~eni~~~ 286 (426)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+ ++.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999876 346999999764
Q ss_pred CCC-------C-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC
Q 014366 287 DLM-------T-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (426)
Q Consensus 287 ~~~-------~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L 358 (426)
... . ....+++.++++..++.++. .....+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 0 01123345556665554443 3355789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 359 DSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|+.+++.+.+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999875 4789999999999875 79999999 8999999998877654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=364.65 Aligned_cols=219 Identities=23% Similarity=0.354 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCH-HHHhc
Q 014366 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRL-DSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~~~~-~~~r~ 263 (426)
.|+++|++++|+.+ ...+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421 23599999999999999999999999999999999999985 89999999999865433 45678
Q ss_pred ceEEEecCC---CCCc-ccHHHHHcCCCC--CC---CCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHH
Q 014366 264 HVGLVSQDI---TLFS-GTVAENIGYRDL--MT---KIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQR 333 (426)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eni~~~~~--~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqk 333 (426)
+++|+||++ .+|+ .|++||+.++.. .. ...... ....+.++++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 4665 599999987521 00 011111 011123334443 3432 34556789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|||++||+++.+. .|||+++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 4689999999999886 799999999999998776544
Q ss_pred c
Q 014366 412 L 412 (426)
Q Consensus 412 l 412 (426)
+
T Consensus 490 ~ 490 (500)
T TIGR02633 490 L 490 (500)
T ss_pred C
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=333.75 Aligned_cols=205 Identities=21% Similarity=0.316 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCC------------------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 187 DVKFCNISFKYAD------------------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 187 ~i~~~~v~~~y~~------------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
+|+++||++.|.. ..+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5778888777643 1235899999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHH----HHHHHhchHHHHHhcCCCcccccCC
Q 014366 249 DDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVE----HTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 249 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
+|. +++++|++.+++ .|++||+.++......+.++.. .+++..+ ++..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE-----------LGEFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcC
Confidence 984 456788877664 5999999764211122233222 2333333 3344455
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
.+.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 678999999999999999999999999999999999999999999998875 4689999999999886 69999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
++++.|+++++..+
T Consensus 220 ~i~~~g~~~~~~~~ 233 (264)
T PRK13546 220 KLKDYGELDDVLPK 233 (264)
T ss_pred EEEEeCCHHHHHHH
Confidence 99999988766554
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=315.12 Aligned_cols=216 Identities=27% Similarity=0.421 Sum_probs=193.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++. .+++++|++|++|.+++++||||||||||+.+++++.++++|+|+++|.++.+.+.+++.++++.
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 7899999999864 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC-cccHHHHHcCCCCC------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 268 VSQDITLF-SGTVAENIGYRDLM------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+-|+..+- ..||+|-+.||+.. ...+...+.++++..++.+.-++. -.+||||||||.-||.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence 99999986 45999999998532 122345567788877777665553 3589999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
.++++.+.++||||.++||......+++.|+++.+ ++|+++|-||.+.+. ++|+|+-|++|+++.+|+|+++.+.+
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 99999999999999999999999999999998854 699999999999996 89999999999999999999988654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=336.02 Aligned_cols=223 Identities=32% Similarity=0.397 Sum_probs=187.7
Q ss_pred ccEEEEeEEEEeCCCC---------CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 014366 186 GDVKFCNISFKYADNM---------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~---------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~ 256 (426)
.-++.+||...|+-+. ..+++++||++++||.+||||+||||||||-..|+++.+++ |+|.++|+++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4589999999986321 24799999999999999999999999999999999999876 9999999999988
Q ss_pred CHHH---HhcceEEEecCCC--CCc-ccHHHHHcCCCCCC--CC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 257 RLDS---LRRHVGLVSQDIT--LFS-GTVAENIGYRDLMT--KI----DMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 257 ~~~~---~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~~~--~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
+.++ +|+++-+|||||+ |-+ .||.+-|.-|...+ .. .++++.++++.+|++.-.. .+.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 8765 5788999999997 433 58888886543211 11 2355677777777764322 234
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.++|||||||+|||||++-+|++++||||||+||..-+..|.+.|+++.+ +-+-++||||+..++ .||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 579999999999999999999999999999999999999999999999853 579999999999997 79999999999
Q ss_pred EEEEeccccccccCcchh
Q 014366 402 KLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~~l 419 (426)
+|||+|+.+.++.+++.-
T Consensus 504 kiVE~G~~~~if~~P~~~ 521 (534)
T COG4172 504 KIVEQGPTEAVFANPQHE 521 (534)
T ss_pred EEeeeCCHHHHhcCCCcH
Confidence 999999999999887543
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=319.72 Aligned_cols=189 Identities=20% Similarity=0.314 Sum_probs=158.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999964 2345 599999999999999999999999999999999999999999999876532 346999
Q ss_pred EecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.+ +..|++||+.+...... ..+++..+++.+++.++.+ ..+.+||||||||++||||++++|
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcc-cHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 9998865 56799999987532211 2445566667766655543 356799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHH-cCCceEEEeccChHHHHhcCEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRL-LGHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~~D~i 395 (426)
+++||||||++||+.+++.+.+.+++. .+++|+|++||+++.++.||-+
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999999999999754 3568999999999999988876
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=399.05 Aligned_cols=218 Identities=19% Similarity=0.309 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|+++.+.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. +..+.|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533469999999999999999999999999999999999999999999999999864 345677889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+||++.+++ .|++||+.+.....+.+. +.+.+.++.+++.++.++ ...+||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999886 599999976322222222 233445666666555444 45799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|++++|||||+|||+.+++.+++.|+++. +++|||++||++++++ .||||++|++|+++..|+++++.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999874 5789999999999986 7999999999999999999887654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=324.60 Aligned_cols=198 Identities=29% Similarity=0.452 Sum_probs=175.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcceEEEecCCCCCcc-cHH
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGLVSQDITLFSG-TVA 280 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (426)
=++||+.+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||.-+.+.. ..--+++|||||||..||+. ||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3689999886799999999999999999999999999999999998775432 23346789999999999965 999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
.|++||... .+.++..+++...++.+.+++.| .+|||||||||||+|||+.+|++|+||||.|+||.
T Consensus 95 gNL~YG~~~--~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 95 GNLRYGMWK--SMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred cchhhhhcc--cchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 999999753 24667888899999999998887 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 361 RSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 361 ~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
..+++++-.|+++.+ +-.|+.|||.++++. .||+|++|++|++...|+.++..+..
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999999999875 358999999998875 79999999999999999988776553
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=361.99 Aligned_cols=213 Identities=23% Similarity=0.391 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
.++++|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 589999984 279999999999999999999999999999999999999999999999998766543 456789
Q ss_pred EEEecCC---CCCc-ccHHHHHcCCCCC--CC----CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHH
Q 014366 266 GLVSQDI---TLFS-GTVAENIGYRDLM--TK----IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (426)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQ 334 (426)
+|+||++ .+|+ .|++||+.++... .. .+.++. ...+.++++.+ |+. ...+..+.+|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3554 5999999864210 00 111111 11133444443 452 3456678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|+++..|+++++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999999985 4689999999999885 7999999999999999988765
Q ss_pred c
Q 014366 413 G 413 (426)
Q Consensus 413 ~ 413 (426)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=342.26 Aligned_cols=213 Identities=33% Similarity=0.472 Sum_probs=182.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.+++++++++|++ ..+++||||+|++||+.||+|+||||||||+++|.|+|+|++|+|++||++++--++.+ .|..|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5899999999984 46999999999999999999999999999999999999999999999999998666654 56779
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+|+|++.|++. ||.|||.++.... ..+..+..+ .+.+..+++ |++-...+....||-||||||.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999976 9999999886421 112222222 233334443 66666677889999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
|+++|++||||||||-|-|...+++++.+++++ +++|||+|||++.++. .|||+-||++|+++..-+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999986 5899999999999986 799999999999876554
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=319.40 Aligned_cols=215 Identities=21% Similarity=0.404 Sum_probs=187.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.+++++|+++|++. .+++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.|+|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 47899999999864 59999999999999999999999999999999999999999999999998764 4567899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+|.+..|++ .||.|-+.|.....+.+.+++.+- +..|++++ ++-....++..+||-|++|+|.+--|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 9999999996 599999988655556665554432 34566665 334445567889999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+++|||||+|||||.+.+.+.+.+.+++ +|.|||+.||+++.++ .||+++.|++|+.|-.|+.+...+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999999986 4899999999999996 799999999999999998877665
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=348.64 Aligned_cols=205 Identities=24% Similarity=0.351 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 187 DVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.++++|++|+|+++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997642 3599999999999999999999999999999999999999999999999751
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
++.+.+.+++ .|++||+.+.......+.++ +.++++.+++.+++++ .+.+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 1223334443 59999997643211222222 3345555555555443 55799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999999875 4689999999999886 6999999999999999998776654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=361.15 Aligned_cols=214 Identities=24% Similarity=0.365 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...++.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4889999742 38999999999999999999999999999999999999999999999998865433 3456789
Q ss_pred EEEecCCC---CCc-ccHHHHHcCCCCCC----C--CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHH
Q 014366 266 GLVSQDIT---LFS-GTVAENIGYRDLMT----K--IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (426)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eni~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQ 334 (426)
+|+||++. +|+ .|+.||+.++.... . ...... ...+.+++..+ |++ .....+..+|||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence 99999973 664 69999998643211 0 011110 01123344443 442 3456677899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. .+.|||++||+++.+. .||++++|++|++++.|++++.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998875 4689999999999985 7999999999999999987765
Q ss_pred c
Q 014366 413 G 413 (426)
Q Consensus 413 ~ 413 (426)
.
T Consensus 484 ~ 484 (501)
T PRK11288 484 T 484 (501)
T ss_pred C
Confidence 4
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=341.38 Aligned_cols=185 Identities=35% Similarity=0.527 Sum_probs=155.2
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----
Q 014366 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM---- 294 (426)
Q Consensus 220 ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~---- 294 (426)
|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++|+||++.+|+. |++||+.++......+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876554 36789999999999965 99999987632212222
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
+++.++++..++.++ ......+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEF-----------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcch-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 234445555554444 444567999999999999999999999999999999999999999999999875
Q ss_pred C--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 375 G--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 375 ~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+ +.|+|+|||+++.+. .||||++|++|++++.|+++++.+++.
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 3 689999999999875 799999999999999999988876653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=368.51 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=167.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-cc
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GT 278 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 278 (426)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..+++++||+|++.+++ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 8999999998742 34667999999999986 49
Q ss_pred HHHHHcCCCCC---CCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCC-CCCCCChHHHHHHHHHHHhcCCCCEEE
Q 014366 279 VAENIGYRDLM---TKIDMER----VEHTARTANADEFVRTLPQGYNTHIGP-RGSSLSGGQRQRLAIARALYQNSSVLI 350 (426)
Q Consensus 279 i~eni~~~~~~---~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~-~g~~LSgGqkQRl~iARal~~~p~ill 350 (426)
|+||+.+.... ...+.++ +++.++..++. +..||.+|+ .+..||||||||++|||||+.+|++|+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999874211 1122222 23333333332 234677764 478999999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH-H-HhcCEEEEEeCCEEEEeccccccc
Q 014366 351 LDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET-V-MMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||||+|||+.++..+.+.|+++. +++|||++||+++. + ..||++++|++|++++.|+++++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999999999886 47899999999973 4 579999999999999999987665
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=357.10 Aligned_cols=215 Identities=24% Similarity=0.374 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 589999983 1699999999999999999999999999999999999999999999999987665543 45679
Q ss_pred EEEecCC---CCCc-ccHHHHHcCCCC--CC-CCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHH
Q 014366 266 GLVSQDI---TLFS-GTVAENIGYRDL--MT-KIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eni~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~ 337 (426)
+|+||++ .+|+ .|+.+|+..... .. .......+ ..+.++++.+ |+. ...+.+..+||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999985 3665 499999853210 00 00111111 1133444444 454 4566778899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||++.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+. .|||+++|++|+++..|+++++..+
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 9999999999999999999999999999999999875 4689999999999986 7999999999999999988776543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=356.20 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=170.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 369999999999753 5999999999999999999999999999999999999999999999872 469
Q ss_pred EEEecCCC--CCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDIT--LFS-GTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~--lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|++|++. +++ .|++||+.+... .....+++.+.++..++. +.. ..++.+||||||||++||||
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHH
Confidence 99999974 443 599999864321 112344566666666652 333 34568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l~~ 414 (426)
++.+|++|||||||++||+.+.+.+.+.|+++ +.|||+|||+++.+. .|||+++|++|+++ ..|+++++.+
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999999999999999999887 359999999999886 69999999999998 7787766543
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=322.27 Aligned_cols=194 Identities=24% Similarity=0.383 Sum_probs=155.3
Q ss_pred EEeCCCCCCcceeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 195 FKYADNMPLVLDQLNLHIR-----AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 195 ~~y~~~~~~~l~~isl~i~-----~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
|+|++.. ..+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 5676543 47888888887 69999999999999999999999999999999999884 589999
Q ss_pred cCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 270 Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|++.. +..|++||+.+.............++++..++.+. .+....+||||||||++|||||+.+|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 57899999965322111112233445555555443 3445679999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEE--Eecccccc
Q 014366 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLE--ELNRSTLL 412 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~--e~g~~~~l 412 (426)
+||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||++++|+++..+ ..++|+.+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 999999999999999999999998753 689999999999987 69999999765433 34445443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=355.76 Aligned_cols=209 Identities=23% Similarity=0.343 Sum_probs=165.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999975 35999999999999999999999999999999999999999999999872 35999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCC--------------CC--CCH-HHHHHH----------HHHhchHHHHHhcCCCccc
Q 014366 268 VSQDITLFSG-TVAENIGYRDLM--------------TK--IDM-ERVEHT----------ARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~--------------~~--~~~-~~~~~~----------~~~~~l~~~~~~lp~g~~t 319 (426)
++|++.+|+. |++||+.++... .. ... ..+.+. -....+.+.++.+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988764 999999764210 00 000 000000 0011223334443 4433
Q ss_pred cc-CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEE
Q 014366 320 HI-GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFL 397 (426)
Q Consensus 320 ~~-~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~v 397 (426)
.. .....+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+|||+++.+. .||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 22 345689999999999999999999999999999999999999999999975 3689999999999885 7999999
Q ss_pred EeCCEEE-Eeccccccc
Q 014366 398 LDNGKLE-ELNRSTLLG 413 (426)
Q Consensus 398 l~~G~i~-e~g~~~~l~ 413 (426)
|++|+++ +.|+++++.
T Consensus 225 l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 225 LDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCEEEEecCCHHHHH
Confidence 9999994 788776553
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=351.75 Aligned_cols=214 Identities=16% Similarity=0.338 Sum_probs=170.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
.|+++|++++| +++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 59999999974 2499999999999999999999999999999999999999999999999998766543 346779
Q ss_pred EEEecCCC---CCc-ccHHHHHcCC-----CCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHH
Q 014366 266 GLVSQDIT---LFS-GTVAENIGYR-----DLMTK-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (426)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eni~~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQ 334 (426)
+|+||++. +|+ .|+.+|..+. ..... .+..+.. ....++++.+ |+. ...+....+|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999963 565 4777763221 11001 0111111 1122334443 332 2346678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. .+.|||++||+++.+. .|||+++|++|+++..++.+.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999998875 4789999999999885 799999999999998876653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=353.61 Aligned_cols=210 Identities=23% Similarity=0.272 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..++
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999732 3699999999999999999999999999999999999999999999875 24699
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCC---------------C-CCC--------HHHHHHHHHHhch-------HHHHHhcC
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLM---------------T-KID--------MERVEHTARTANA-------DEFVRTLP 314 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~---------------~-~~~--------~~~~~~~~~~~~l-------~~~~~~lp 314 (426)
||||++.+++ .|++||+.++... . ... ..++.++++.++. .+.++.+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 9999999885 4999999864210 0 000 0123333333332 2233333
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcC
Q 014366 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAK 393 (426)
Q Consensus 315 ~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D 393 (426)
|++. .+....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .|+|+|||+++.+. .||
T Consensus 151 -~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 -RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred -CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 4432 456788999999999999999999999999999999999999999999998863 59999999999986 699
Q ss_pred EEEEEeCCEEE-Eeccccccc
Q 014366 394 RVFLLDNGKLE-ELNRSTLLG 413 (426)
Q Consensus 394 ~i~vl~~G~i~-e~g~~~~l~ 413 (426)
++++|++|+++ ..|+++++.
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred eEEEEECCEEEEecCCHHHHH
Confidence 99999999976 667766543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=356.46 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..++
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999722 4699999999999999999999999999999999999999999999874 24699
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCC---------------CCCCH---------HHHHHHHHH-------hchHHHHHhcC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLM---------------TKIDM---------ERVEHTART-------ANADEFVRTLP 314 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~---------------~~~~~---------~~~~~~~~~-------~~l~~~~~~lp 314 (426)
||||++.+++. |++||+.++... ..... .++.+.++. ..+.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999998865 999999764210 00000 001111111 1123334443
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcC
Q 014366 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAK 393 (426)
Q Consensus 315 ~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D 393 (426)
|++ ....+..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+. .||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 443 2466778999999999999999999999999999999999999999999999873 59999999999986 699
Q ss_pred EEEEEeCCEEE-Eecccccc
Q 014366 394 RVFLLDNGKLE-ELNRSTLL 412 (426)
Q Consensus 394 ~i~vl~~G~i~-e~g~~~~l 412 (426)
+|++|++|+++ ..|+.+.+
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eEEEEeCCEEEEecCCHHHH
Confidence 99999999986 67776654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=359.26 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=170.7
Q ss_pred CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc
Q 014366 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (426)
Q Consensus 201 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (426)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+++.++||+|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 357999999999999999999999999999999999999885 799999999875 35678899999999999864
Q ss_pred -cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHh--cCCCcccccCCC--CCCCChHHHHHHHHHHHhcCCCCEE
Q 014366 278 -TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRT--LPQGYNTHIGPR--GSSLSGGQRQRLAIARALYQNSSVL 349 (426)
Q Consensus 278 -ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~--lp~g~~t~~~~~--g~~LSgGqkQRl~iARal~~~p~il 349 (426)
||+||+.++.... ..+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 9999998753221 1122211 1112333333 233568999974 4789999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-H-HHhcCEEEEEeCCEEEEeccccccc
Q 014366 350 ILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-T-VMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 350 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~-~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||||||+.+...+.+.|+++. +++|+|+++|+++ . ...||++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999999986 4789999999985 4 4689999999999999999987664
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=322.94 Aligned_cols=202 Identities=26% Similarity=0.336 Sum_probs=159.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLD 259 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~ 259 (426)
.+|+|+|++. ..+++|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+....
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999754 359999994 999999999999999999999999999999999996 788887654332
Q ss_pred HHhc--ceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 260 SLRR--HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 260 ~~r~--~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
..+. .++|++|++.+++.++.+|+...... ....+...++++..++ +...+..+.+||||||||++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-KDERGKLDELVDQLEL-----------RHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhch-hHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHH
Confidence 2222 47899998877766666665432111 1112334445554444 44445567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||||++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999998854 689999999999987 699999994 6665543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=350.97 Aligned_cols=210 Identities=25% Similarity=0.338 Sum_probs=166.9
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC-CCHHHHhc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN-IRLDSLRR 263 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~-~~~~~~r~ 263 (426)
..|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. .....+|+
T Consensus 259 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 259 PRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred ceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 359999999999753 599999999999999999999999999999999999876 79999999987632 22334677
Q ss_pred ceEEEecCCCCC-c--ccHHHHHcCCCC-----CCCCC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 264 HVGLVSQDITLF-S--GTVAENIGYRDL-----MTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 264 ~i~~v~Q~~~lf-~--~ti~eni~~~~~-----~~~~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
+++|++|++.++ . .++++++.++.. ..... .+++.++++..++.+ .....++.+|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK----------RTADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch----------hhccCchhhCCHHH
Confidence 899999998764 2 367777643211 00111 123344444444432 03445668999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEeccChHHHH--hcCEEEEEeCCEEEEec
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-H-HTVLVIAHHLETVM--MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~--~~D~i~vl~~G~i~e~g 407 (426)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ + .|||++||+++.+. .||++++|++|++++.-
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999999853 3 46999999999985 48999999999998654
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=291.35 Aligned_cols=143 Identities=34% Similarity=0.569 Sum_probs=134.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 36999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
+|| ||+||+||++||||++++|+
T Consensus 68 ~~~---------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 68 FEQ---------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred Ecc---------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 998 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
++||||||++||+.+...+.+.++++ ++|+|++||+++.+. .||++++|++|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999887 469999999999985 699999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=311.52 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=148.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-EcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAE 281 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 281 (426)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.+++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777532 12356677765 9999
Q ss_pred HHcCCCCCCCCCHHHHHHH-HHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 282 NIGYRDLMTKIDMERVEHT-ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
|+.+.....+.+.++..+. .+..++.+. .+.....||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQC-----------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhHH-----------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9976432112233332222 222233322 2334578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 361 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
.+++.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+.+..
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 999999998865444578999999999985 7999999999999999876654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=379.93 Aligned_cols=214 Identities=24% Similarity=0.377 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~ 261 (426)
.++++||+++|+. +.+.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 3789999999952 23469999999999999999999999999999999999997 78999999999874 246
Q ss_pred hcceEEEecCCCCC-cccHHHHHcCCCCCC---CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 262 RRHVGLVSQDITLF-SGTVAENIGYRDLMT---KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 262 r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~---~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
|+.++||+|++.++ ..||+||+.++...+ ..++ ++++++++..++.+ -.|+.+|+.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88899999997765 569999998742111 1222 23455566655543 357788888889999999
Q ss_pred HHHHHHHHhcCCCC-EEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH--HhcCEEEEEeCC-EEEEecc
Q 014366 334 QRLAIARALYQNSS-VLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV--MMAKRVFLLDNG-KLEELNR 408 (426)
Q Consensus 334 QRl~iARal~~~p~-illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~--~~~D~i~vl~~G-~i~e~g~ 408 (426)
||++|||||+.+|+ +|+|||||||||+.+...+.+.|+++. +++|||+++|+++.. ..||++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999984 578999999999863 579999999997 9999998
Q ss_pred ccc
Q 014366 409 STL 411 (426)
Q Consensus 409 ~~~ 411 (426)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 753
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=345.90 Aligned_cols=206 Identities=27% Similarity=0.334 Sum_probs=166.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 359999999999753 599999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEecCC-CCCc-ccHHHHHcCCCCCCCC--CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDI-TLFS-GTVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~-~lf~-~ti~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||+||++ .+++ .|++||+.++...... ...+...+++..++.+ ........+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5665 5999999875321111 1222333444444321 12344568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeC-CEEEE-eccccccccCc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDN-GKLEE-LNRSTLLGSNH 416 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~-G~i~e-~g~~~~l~~~~ 416 (426)
++.+|++|||||||++||+.+.+.+.+.|.++. .|+|+|||+++.+. .||+|++|++ |++.+ .|+.+++.++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 999999999999999999999999999999873 48999999999886 7999999996 78864 67766665543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=344.67 Aligned_cols=202 Identities=25% Similarity=0.344 Sum_probs=163.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 321 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred eEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 359999999999753 599999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEecCCC-CCc-ccHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDIT-LFS-GTVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~-lf~-~ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++. +++ .|++||+.++....... ..+...+++..+ ++. .......+||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN-----------FKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCC-----------CChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999974 664 59999998753211111 122233333333 322 234566899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeC-CEEEE-eccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDN-GKLEE-LNRSTLLG 413 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~-G~i~e-~g~~~~l~ 413 (426)
|++.+|++|||||||++||+.+.+.+.+.|+++. .|||+|||+++.+. .||+|++|++ |+++. .|+.+++.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 9999999999999999999999999999999874 48999999999886 6999999997 58764 45555443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=294.90 Aligned_cols=216 Identities=28% Similarity=0.384 Sum_probs=179.7
Q ss_pred EEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 189 KFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 189 ~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.++|..+.|.++ ++++|+++|++|++|+++.|+|.||||||||++.|+|-.+|++|+|.+||+|+...+.......+
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 445555555322 35799999999999999999999999999999999999999999999999999999988877889
Q ss_pred EEEecCCC--CC-cccHHHHHcCCCCC---CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LF-SGTVAENIGYRDLM---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf-~~ti~eni~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+-|+|||. .+ +.||.||+.++... ....... ..-++....+.+..+|.|++-.++.+..-|||||||-++++
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 99999996 35 45999999864321 1122111 11122234456788999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHH-HhcCEEEEEeCCEEEEe
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETV-MMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~ 406 (426)
.|.++.|+||+|||-|++|||.+...|++.=.+.- + +-|.+||||+++.+ .+-+|.++|++|+|+-.
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999999999999999999999998877763 2 46999999999775 68899999999999854
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=316.77 Aligned_cols=223 Identities=29% Similarity=0.389 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeC--CCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~--~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~~~ 259 (426)
-++++|++..|. ++...++++|||+|++||++||||+||||||-....++|+++- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 488999998885 3345699999999999999999999999999999999999964 479999999999888887
Q ss_pred HHhc----ceEEEecCCC--CCcc-cHHHHH----cCCCCC-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 260 SLRR----HVGLVSQDIT--LFSG-TVAENI----GYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 260 ~~r~----~i~~v~Q~~~--lf~~-ti~eni----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
++|+ +|+++||+|. |-+. ||..-+ .+-... .....+++.+.++.+++.+--. .+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 7764 6999999996 3333 554444 332211 1122455666777777654322 23345689
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
|||||||||.||.||+.+|++||.||||.+||...+.+|++.|+++.+ +..+++||||+..++ .||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999999864 689999999999997 79999999999999
Q ss_pred EeccccccccCcc
Q 014366 405 ELNRSTLLGSNHD 417 (426)
Q Consensus 405 e~g~~~~l~~~~~ 417 (426)
|.|+.+.++.++.
T Consensus 238 E~~~t~~lF~~Pq 250 (534)
T COG4172 238 ETGTTETLFAAPQ 250 (534)
T ss_pred ecCcHHHHhhCCC
Confidence 9999988887654
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=300.48 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~ 264 (426)
.-|+++||+++|+++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+.....+. .++|++
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 359999999999764 69999999999999999999999999999999999999999999999999887776 899999
Q ss_pred eEEEecCCCC-C--cccHHHHHcCC------CCCCCCCHHHH---HHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 265 VGLVSQDITL-F--SGTVAENIGYR------DLMTKIDMERV---EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 265 i~~v~Q~~~l-f--~~ti~eni~~~------~~~~~~~~~~~---~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
||+|+-+-.. | +.+++|-+.-| ......++++. ...++.+ |.....++.-.+||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~-----------g~~~la~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL-----------GAKHLADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHc-----------chhhhccCchhhcCHhH
Confidence 9999976442 3 34788877532 11113333332 2333333 44444556678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG---HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
|||+.|||||+++|++|||||||+|||...++.+.+.|.++.. ..++|+|||+.+++. ..++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999998853 468999999999986 679999999999998873
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=342.64 Aligned_cols=193 Identities=25% Similarity=0.369 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++. .|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 59999999999642 5999999999999999999999999999999999999999999985 1499
Q ss_pred EEecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.++ +.|++||+.++..... ......++++..++.+..++ ...+||||||||++|||||+++
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLG-SSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcC-hHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 999998765 5699999987522111 12344566666666655444 4579999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .|||+++|+ |++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999999999843 689999999999886 799999996 47777665
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=289.84 Aligned_cols=219 Identities=25% Similarity=0.359 Sum_probs=190.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC-EeCCCCCHHHH-hcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD-HDVQNIRLDSL-RRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g-~~i~~~~~~~~-r~~ 264 (426)
.++++||+.+|++- .+|+++||++.+||.-+|+|||||||||++..|+|-.+|+.|+++++| .|++.++..++ |..
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 58999999999864 599999999999999999999999999999999999999999999999 99999887665 556
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
||--||.|..|.. ||+||+.+..... .....++++.+...++.+.. +.....||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~~A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DRLAALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hhhhhhhccc
Confidence 9999999999965 9999997643211 11223455555555554443 3455799999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
|||++.|+..++++|++|+||||++|+-.+.....-+.|+++++.++|++|-||+.+++ .||+|-||++|.+...|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 99999999999999999999999999999999999999999998899999999999997 79999999999999999999
Q ss_pred ccccCcch
Q 014366 411 LLGSNHDS 418 (426)
Q Consensus 411 ~l~~~~~~ 418 (426)
++.++++-
T Consensus 232 ~v~~dp~V 239 (249)
T COG4674 232 EVQNDPKV 239 (249)
T ss_pred HhhcCcce
Confidence 99888753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=344.15 Aligned_cols=201 Identities=26% Similarity=0.378 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ .++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999975 35999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEecCC-CCCcc-cHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 267 LVSQDI-TLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 267 ~v~Q~~-~lf~~-ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
|++|++ .+++. |+.||+.++......+ ..++...++..++.. .....+...||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP----------KRAMTPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH----------HHHhChhhhCCHHHHHHHHHHHHH
Confidence 999986 46654 9999998643211111 223344444444321 123345679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe-CCEEEEe-cccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD-NGKLEEL-NRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~-~G~i~e~-g~~~~l 412 (426)
+.+|++|||||||++||+.+...+.+.|+++ +.|||+|||+.+.+. .||++++|+ +|++++. |+.++.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999999886 459999999999886 799999998 8999763 444443
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=284.46 Aligned_cols=154 Identities=45% Similarity=0.733 Sum_probs=143.6
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
++|++|+|++. ++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.......+++.++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999754 5999999999999999999999999999999999999999999999999988766677788899999
Q ss_pred cCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 014366 270 QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (426)
Q Consensus 270 Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~il 349 (426)
| |||||+||++||||++.+|+++
T Consensus 80 q---------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 80 Q---------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred e---------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9 9999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh-cCEEEEEeCCE
Q 014366 350 ILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM-AKRVFLLDNGK 402 (426)
Q Consensus 350 llDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~D~i~vl~~G~ 402 (426)
+|||||++||+.++..+.+.+.++.+ ++|++++||+++.+.. ||++++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999998754 5899999999999975 79999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=343.32 Aligned_cols=200 Identities=24% Similarity=0.350 Sum_probs=164.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 35999999999975 35999999999999999999999999999999999999999999999741 259
Q ss_pred EEEecCC--CCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDI--TLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~--~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
||++|++ .+.. .|+.+++....+ ....+++...++..++.. .....+...||||||||++|||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAP--QELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCc--hhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999985 3443 488888742111 112344555555555421 123345679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eecccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l 412 (426)
+.+|++|||||||++||+.+...+.+.|.++ + .|||+|||+++.+. .||+|++|++|+++ ..|+.+++
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999987 3 49999999999986 79999999999997 67776655
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=289.01 Aligned_cols=151 Identities=28% Similarity=0.366 Sum_probs=134.5
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEec
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q 270 (426)
.|++++|++. .++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~~--~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVF--FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECCE--EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 5899999753 58888 49999999999999999999999999999999999999999853 788888
Q ss_pred CCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 014366 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (426)
Q Consensus 271 ~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ill 350 (426)
++. ||||||||++||||++.+|++++
T Consensus 69 ~~~------------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 69 YID------------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred cCC------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 642 99999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-CC-ceEEEeccChHHHH-hcCEEEEEeCCEEEEe--cccc
Q 014366 351 LDEATSALDSRSELLVRQAVDRLL-GH-HTVLVIAHHLETVM-MAKRVFLLDNGKLEEL--NRST 410 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~--g~~~ 410 (426)
|||||++||+.+++.+.+.++++. ++ .|+|++||+++.+. .||++++|+++-.+.. |.|.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999999998874 33 79999999999987 6999999998765533 5555
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=343.04 Aligned_cols=201 Identities=22% Similarity=0.334 Sum_probs=162.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3599999999999999999999999999999999999999999999865 2469
Q ss_pred EEEecCCCCCcccHHHHHc--CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDITLFSGTVAENIG--YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+|++|++. ...++.+|.. +.........+++..+++.+++.+.. ...++.+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2234444432 11111123456666777777664321 22345799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eeccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTL 411 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~ 411 (426)
.+|++|||||||++||+.+.+.+.+.|.+. + .|+|+|||+++.+. .||++++|++|+++ ..|++++
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999999999999999999999999998875 3 49999999999986 69999999999998 5666544
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=285.59 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 263 (426)
.++++|++.+-.+. +.+|+++||+|++||+.+|.||||||||||.+.|+|. |++++|+|.++|+|+.++++.+. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 48999999998764 3699999999999999999999999999999999997 58999999999999999998765 56
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC-CC------CCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TK------IDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~-~~------~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+..-+|.|.=++| |+.+-++.+... .+ ...+++.++++..++++ ++++ . ++ ..+|||||+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R---~----vN---~GFSGGEkK 151 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER---Y----VN---EGFSGGEKK 151 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc---c----cC---CCcCcchHH
Confidence 69999999998888 999988643211 01 11355667777777766 4433 1 22 479999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh--cCEEEEEeCCEEEEeccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM--AKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~--~D~i~vl~~G~i~e~g~~~~ 411 (426)
|.-|+.+++.+|++.|||||-||||..+-+.|.+.+.+++. +.++++|||....+.+ .|++.||-+|+|+..|.++.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~el 231 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPEL 231 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999864 7899999999999986 49999999999999999843
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=358.70 Aligned_cols=214 Identities=24% Similarity=0.345 Sum_probs=176.2
Q ss_pred cEEEEeEEEEeCC-----------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeC
Q 014366 187 DVKFCNISFKYAD-----------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDV 253 (426)
Q Consensus 187 ~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i 253 (426)
.+.++||++..+. +...+|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123699999999999999999999999999999999999763 789999999875
Q ss_pred CCCCHHHHhcceEEEecCCCCCc-ccHHHHHcCCCCC---CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCC
Q 014366 254 QNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~---~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g 325 (426)
. ...+++.+|||+|++.+++ .||+||+.+.... ...+. +.+++.++..++.+.. ++.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 4 2456778999999988876 5999999864211 11222 2355666776665543 45555443
Q ss_pred -CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH-H-HhcCEEEEEeC-
Q 014366 326 -SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET-V-MMAKRVFLLDN- 400 (426)
Q Consensus 326 -~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~D~i~vl~~- 400 (426)
..||||||||++|||+|+.+|++|+|||||||||+.+...+.+.|+++. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999985 47899999999974 3 68999999996
Q ss_pred CEEEEecccc
Q 014366 401 GKLEELNRST 410 (426)
Q Consensus 401 G~i~e~g~~~ 410 (426)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=336.21 Aligned_cols=207 Identities=23% Similarity=0.354 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++. .+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 7899999999753 59999999999999999999999999999999999999999999998741 3788
Q ss_pred EecCCCCCcccHHHHHcCCCCC-CCC-----------CHHHH---HHHHH-------HhchHHHHHhcCCCcc-cccCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLM-TKI-----------DMERV---EHTAR-------TANADEFVRTLPQGYN-THIGPR 324 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~-~~~-----------~~~~~---~~~~~-------~~~l~~~~~~lp~g~~-t~~~~~ 324 (426)
++|++..+..|+.+++.-.... ... ....+ ..... ...+.+.+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 8886544444555554211000 000 00000 00000 01223344444 453 345667
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|||+|||+.+.+. .||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 7899999999999999999999999999999999999999999999876 469999999999986 7999999999999
Q ss_pred EE-eccccc
Q 014366 404 EE-LNRSTL 411 (426)
Q Consensus 404 ~e-~g~~~~ 411 (426)
+. .|+...
T Consensus 225 ~~~~g~~~~ 233 (638)
T PRK10636 225 FEYTGNYSS 233 (638)
T ss_pred EEecCCHHH
Confidence 74 565543
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=280.52 Aligned_cols=155 Identities=26% Similarity=0.325 Sum_probs=128.7
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
.++|+|+||++++|++++|+||||||||||++++. +++|++.++|.. .. ..++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH-----------
Confidence 46899999999999999999999999999999985 379999998752 11 12345788877
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccCCCC
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSAL 358 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqkQRl~iARal~~~--p~illlDEpts~L 358 (426)
.++++..+ +.. .++.++.+||||||||++||||++.+ |+++||||||++|
T Consensus 68 ----------------~~~l~~~~-----------L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ----------------LQFLIDVG-----------LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ----------------HHHHHHcC-----------CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 11222222 222 25567789999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 359 DSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
|+.+.+.+.+.|+++. .++|||++||+++.+..||++++|++|+.
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 9999999999999875 47899999999999889999999977543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=276.16 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH
Q 014366 188 VKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~ 260 (426)
++++|++++|... ...+++.|||++++|+.+|++|.||||||||.|+|+|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 6778888776422 235899999999999999999999999999999999999999999999999987666666
Q ss_pred HhcceEEEecCCCC-Ccc--cHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 261 LRRHVGLVSQDITL-FSG--TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 261 ~r~~i~~v~Q~~~l-f~~--ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
..++|-++||||.- |+- .|-.-+..... ..+.+ .+++.+-++.+|+ +|+- ..-.+..||.||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdh----an~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDH----ANYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Cccc----cccchhhcCchh
Confidence 66789999999973 331 22222221111 11222 2344455555554 4432 122457899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||||+||||+-+|+|+|.||+.++||...+.++.+...++. .|-+-|.|+.++..++ .+|+|+||++|+++|.|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999999987775 3678999999999998 5999999999999999999
Q ss_pred cccccCc
Q 014366 410 TLLGSNH 416 (426)
Q Consensus 410 ~~l~~~~ 416 (426)
.+++.++
T Consensus 235 ~~v~a~P 241 (267)
T COG4167 235 ADVLASP 241 (267)
T ss_pred hhhhcCC
Confidence 8888765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=329.67 Aligned_cols=207 Identities=29% Similarity=0.337 Sum_probs=156.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 4899999999975 359999999999999999999999999999999999999999999998631 257
Q ss_pred EEecCCCCC-cccHHHHHcCCCC----------------CCCCCHHHHHHH------HH-------HhchHHHHHhcCCC
Q 014366 267 LVSQDITLF-SGTVAENIGYRDL----------------MTKIDMERVEHT------AR-------TANADEFVRTLPQG 316 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~----------------~~~~~~~~~~~~------~~-------~~~l~~~~~~lp~g 316 (426)
+++|++... .+++.+++..+.. ......+.+... +. ...+.+.++.+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 777765322 2456555421100 000000000000 00 01123334443 3
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEE
Q 014366 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRV 395 (426)
Q Consensus 317 ~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i 395 (426)
+. ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++. .|||+|||+.+.+. .||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeE
Confidence 43 255678999999999999999999999999999999999999999999998873 59999999999986 69999
Q ss_pred EEEeCCEEEE-ecccccc
Q 014366 396 FLLDNGKLEE-LNRSTLL 412 (426)
Q Consensus 396 ~vl~~G~i~e-~g~~~~l 412 (426)
++|++|+++. .|+...+
T Consensus 224 ~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEECCEEEEecCCHHHH
Confidence 9999999975 4765543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=331.96 Aligned_cols=193 Identities=27% Similarity=0.333 Sum_probs=156.7
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLD 259 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~ 259 (426)
++++++|+++ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..+
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3488999753 35899999 9999999999999999999999999999999999997 899887643211
Q ss_pred --HHhcceE----EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 --SLRRHVG----LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 --~~r~~i~----~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+.+++ |++|.|.+|.+|++||+.... ..+++.++++..++.+. .+....+||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-----~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~ 218 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-----ERGKLDEVVERLGLENI-----------LDRDISELSGGEL 218 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh-----HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHH
Confidence 1112344 455556677789999996421 12445556666555443 3445679999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
||++|||||+++|++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|+++
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999855889999999999986 69999999873
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=262.37 Aligned_cols=197 Identities=28% Similarity=0.406 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.+.++||+.+.++. ..|-++||+|.+||++.|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 46789999888764 5899999999999999999999999999999999999874 79999999999877643 67
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|++|||+.||+. +|.+|+.|..+..- ........++++.+++.+..+.| .+||||||-||++-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 89999999999976 99999998654221 11233456778888888777766 69999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH-Hc-CCceEEEeccChHHHHhcCEEEEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDR-LL-GHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
|+|+..|+.++||||+|.||..-+..+.+..-. .+ .+-.+++||||.+.+..-.||+.|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999999988888887643 32 367889999999988755566655
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=352.49 Aligned_cols=203 Identities=24% Similarity=0.268 Sum_probs=165.6
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~----~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (426)
+++|+|+|+++++||+++|+||||||||||+|+|+|.. +|++|+|.+||+++.+.. ..+|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 579999999999876443 3456779999999988864
Q ss_pred -cHHHHHcCCCCCC-------CCCHHHH-----HHHHHHhchHHHHHhcCCCcccccCC-CCCCCChHHHHHHHHHHHhc
Q 014366 278 -TVAENIGYRDLMT-------KIDMERV-----EHTARTANADEFVRTLPQGYNTHIGP-RGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 278 -ti~eni~~~~~~~-------~~~~~~~-----~~~~~~~~l~~~~~~lp~g~~t~~~~-~g~~LSgGqkQRl~iARal~ 343 (426)
||+||+.++.... +.+.++. +.+++..++.+ -.+|.+|+ ....|||||||||+|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999998742110 1122221 22333333332 34666664 56799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccCh-HHH-HhcCEEEEEeCCEEEEecccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHL-ETV-MMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~-~~~-~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|+++|++ +.+ ..+|+|++|++|+++..|+++++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 99999999999999999999999999999853 68999999997 455 57999999999999999988655
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=313.43 Aligned_cols=207 Identities=32% Similarity=0.414 Sum_probs=164.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 5899999999965 46999999999999999999999999999999999999999999987641 2599
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHH------------------HH-------hchHHHHHhcCCCcccc
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA------------------RT-------ANADEFVRTLPQGYNTH 320 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~------------------~~-------~~l~~~~~~lp~g~~t~ 320 (426)
|++|++.+.+. ||.|.+..+......-..+.+.+. +. +.+...+..+ |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999865 999998765321000001111110 00 1222233333 34444
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
..+..+||||||.|++|||||+.+|++|||||||++||.++...+.+.|.+.. + |+|+||||-.++. .|++|+.++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEec
Confidence 66778999999999999999999999999999999999999999999998764 4 9999999999996 699999999
Q ss_pred CCEEEE-eccccc
Q 014366 400 NGKLEE-LNRSTL 411 (426)
Q Consensus 400 ~G~i~e-~g~~~~ 411 (426)
+|++.. .|+.+.
T Consensus 225 ~g~l~~y~Gny~~ 237 (530)
T COG0488 225 RGKLTPYKGNYSS 237 (530)
T ss_pred CCceeEecCCHHH
Confidence 998864 455443
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=277.26 Aligned_cols=191 Identities=26% Similarity=0.347 Sum_probs=159.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC--cccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF--SGTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf--~~ti 279 (426)
.++|+||||++++||.+||+|+||||||||+|+|+|.|+|++|+|.++|.- +++..-..=| +.|.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-------------~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-------------APLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-------------ehhhhcccCCCcccch
Confidence 368999999999999999999999999999999999999999999999853 2222211113 3599
Q ss_pred HHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC
Q 014366 280 AENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (426)
Q Consensus 280 ~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt 355 (426)
+||+.+.....+.+ ++.+++..+-+++.+|++. +..++|.||+-|+++|-|...+|+|||+||..
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99997532222223 3455667777788888765 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-cCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 356 SALDSRSELLVRQAVDRL-LGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+.-|+.=.++=.+.+.++ .+++|+|+|||+++.++ .|||+++|++|++...|++++..+..
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y 238 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHH
Confidence 999999988888888888 56799999999999996 79999999999999999998776543
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=288.02 Aligned_cols=364 Identities=16% Similarity=0.216 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 014366 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQL-IY 104 (426)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 104 (426)
+...+.+.+.+..-++.+..++..-.-.+...+.+.|-.|+.+..+....+...++..+...+...++-....+..+ -+
T Consensus 242 i~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y 321 (659)
T KOG0060|consen 242 INKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY 321 (659)
T ss_pred HHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666667777777777788888999999999998887666655554443332222222111111111 12
Q ss_pred HHHHHHHH-HHHHHH---hCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc----
Q 014366 105 FGALFILC-GGSLLV---SGGSFDGCSLVSFITS----LVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV---- 172 (426)
Q Consensus 105 ~~~~~~~~-~g~~lv---~~g~l~~g~l~~~~~~----~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~---- 172 (426)
++.++..+ ++.-+. ..+.++...+...+.. ...+++.+..+.....++.+-..-..|+.++++.-.+.
T Consensus 322 lg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~ 401 (659)
T KOG0060|consen 322 LGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGS 401 (659)
T ss_pred HHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCC
Confidence 22222111 111111 2345677776655543 22344555556656666666667778887765421100
Q ss_pred ----------cC-------CCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 014366 173 ----------IE-------KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 173 ----------~~-------~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll 235 (426)
.+ .++.....+.+..|++++|+++-|++...+++|+||+|+.|+.+.|.||||||||+|++.+
T Consensus 402 ~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvl 481 (659)
T KOG0060|consen 402 QECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVL 481 (659)
T ss_pred cchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHH
Confidence 00 0000111122356999999999987555678889999999999999999999999999999
Q ss_pred hcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCC-----CCCCCCHHHHHHHHHHhchHHHH
Q 014366 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD-----LMTKIDMERVEHTARTANADEFV 310 (426)
Q Consensus 236 ~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 310 (426)
.|+++..+|++.--...- -+.+-|+||.|+.-.||.||-+.|+. .....+++++.+.++.+++.+.+
T Consensus 482 ggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 482 GGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred hcccccCCCeEEecccCC--------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999997533210 14589999999988999999999872 22346788999999999999988
Q ss_pred HhcCCCcccccC-CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 311 RTLPQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 311 ~~lp~g~~t~~~-~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
++. +|+|+.+. +-...||+||+||+|+||.++.+|++-+|||.|||+|.+.|..+.+.+++. +.|.|-|+||.+..
T Consensus 554 ~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~ 630 (659)
T KOG0060|consen 554 ERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLW 630 (659)
T ss_pred HHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHH
Confidence 886 48987665 457899999999999999999999999999999999999999999999876 78999999999999
Q ss_pred HhcCEEEEEeC
Q 014366 390 MMAKRVFLLDN 400 (426)
Q Consensus 390 ~~~D~i~vl~~ 400 (426)
++=|.++-|+.
T Consensus 631 kfHd~~L~~~g 641 (659)
T KOG0060|consen 631 KFHDYVLRMDG 641 (659)
T ss_pred hhhhEEEEecC
Confidence 99999999975
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=261.12 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE-----eCCCCCHHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH-----DVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~-----~i~~~~~~~~ 261 (426)
-++++++|+.|++. .-.+||||++.|||..+|||+||||||||++||++-+.|+.|+|.+.-. ++-.++..+.
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 47899999999865 4789999999999999999999999999999999999999999998652 3334444333
Q ss_pred ----hcceEEEecCCC--C-CcccHHHHH----c-CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 262 ----RRHVGLVSQDIT--L-FSGTVAENI----G-YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 262 ----r~~i~~v~Q~~~--l-f~~ti~eni----~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
|...|+|.|+|. | ...|.-.|| . .|.+....-.++ ..+|+++..-. .+.+++.+..+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~---------a~~WL~~VEI~-~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE---------AQDWLEEVEID-LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHH---------HHHHHHhcccC-cccccCcccccc
Confidence 456899999995 2 122333333 1 222211111122 23444443211 245677789999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEe
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
||++||+.|||-|+..|+++++||||.|||..-+.++++.++.+.. +-.++++||++..++ .+||.+||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999998753 569999999999997 6999999999999999
Q ss_pred ccccccccCc
Q 014366 407 NRSTLLGSNH 416 (426)
Q Consensus 407 g~~~~l~~~~ 416 (426)
|-.+....++
T Consensus 234 GLTDrvLDDP 243 (258)
T COG4107 234 GLTDRVLDDP 243 (258)
T ss_pred ccccccccCC
Confidence 9877665543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=347.94 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=165.5
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-c
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (426)
..+|+|+|++|++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999886543 2678999999988875 5
Q ss_pred cHHHHHcCCCCCCC----------CCHH----------HHHHHHHHh---------chHHHHHhc--CCCcccccCC-CC
Q 014366 278 TVAENIGYRDLMTK----------IDME----------RVEHTARTA---------NADEFVRTL--PQGYNTHIGP-RG 325 (426)
Q Consensus 278 ti~eni~~~~~~~~----------~~~~----------~~~~~~~~~---------~l~~~~~~l--p~g~~t~~~~-~g 325 (426)
||+||+.|+..... .+.+ +++...+.. -.++.++.+ .+-.||.+|+ ..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421110 0011 110000100 012333333 2234677764 56
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChH-H-HHhcCEEEEEeCC
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLE-T-VMMAKRVFLLDNG 401 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~-~-~~~~D~i~vl~~G 401 (426)
..|||||||||+|||+++.+|++++|||||+|||+.+...+.+.|+++. .++|+|+++|++. . ...||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 7999999999999999999999999999999999999999999999985 3689999999973 4 4689999999999
Q ss_pred EEEEeccccccc
Q 014366 402 KLEELNRSTLLG 413 (426)
Q Consensus 402 ~i~e~g~~~~l~ 413 (426)
+++..|+++++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999877654
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=281.50 Aligned_cols=205 Identities=28% Similarity=0.388 Sum_probs=157.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe-cCCCCC-cccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLF-SGTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~ti~ 280 (426)
++++|+||+|++|++++++|+|||||||++|+|+|++.|++|.|.++|.+--+ +.+++-+++++|+ |...+. ...+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999987544 2334444566554 433332 22344
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
|-+.......+.++++..+-++ .+.+-| +++..+..+...||-|||.|..||.||+++|+||+|||||-+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 4332211112334443333221 122222 455556667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 361 RSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 361 ~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
..+..|.+.+++.. .+.||+..||+++.+. .||||++|++|+++..|+.+.|..+
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999875 4689999999999885 8999999999999998887666543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=321.57 Aligned_cols=218 Identities=22% Similarity=0.282 Sum_probs=161.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEEcCEeCCCC--CH--
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILVDDHDVQNI--RL-- 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~I~~~g~~i~~~--~~-- 258 (426)
..|+++|++|+|++. ++|+|+||+|++|+++|||||||||||||+++|+|.. .|++|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 469999999999753 5999999999999999999999999999999999864 58899998766543211 11
Q ss_pred ----------HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhch----------HHHHHhcC
Q 014366 259 ----------DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANA----------DEFVRTLP 314 (426)
Q Consensus 259 ----------~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l----------~~~~~~lp 314 (426)
..+++.+++++|++.+...+..+|...... ...+. +++.++++..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 112445888999876543344444322110 11111 223333332221 2223332
Q ss_pred CCcc-cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hc
Q 014366 315 QGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MA 392 (426)
Q Consensus 315 ~g~~-t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~ 392 (426)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+.+.+. .|
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 332 2234456899999999999999999999999999999999999999999999887 579999999999986 69
Q ss_pred CEEEEEeCCEEE-Eecccc
Q 014366 393 KRVFLLDNGKLE-ELNRST 410 (426)
Q Consensus 393 D~i~vl~~G~i~-e~g~~~ 410 (426)
|+|++|++|+++ ..|+.+
T Consensus 409 d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred CEEEEEECCEEEEeCCCHH
Confidence 999999999996 456554
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=313.67 Aligned_cols=218 Identities=32% Similarity=0.457 Sum_probs=181.5
Q ss_pred ccEEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHH
Q 014366 186 GDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~I~~~g~~i~~~~~~ 259 (426)
..++++|++..-++. .+.+|+|||.+++|||+.||+||||||||||+++|+|..++ .+|+|++||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 468899999888654 36799999999999999999999999999999999999974 78999999954 3456
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCC---CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCC-CCCCCCh
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLM---TKID----MERVEHTARTANADEFVRTLPQGYNTHIGP-RGSSLSG 330 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~---~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~-~g~~LSg 330 (426)
.+++..|||.||..+++. ||+|++.|.... ...+ ++++++.++..++.+.- ||.+|. ....+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~-------~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCA-------DTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhc-------cceecCCCCCcccc
Confidence 788999999999999875 999999764211 1112 34455566666655332 566653 3468999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH--HHhcCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET--VMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~D~i~vl~~G~i~e~g 407 (426)
|||+|++||.-++.||+||+|||||||||+.+...+.+.|+++. +|+|||++=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999985 58999999999953 4679999999999999999
Q ss_pred cccccc
Q 014366 408 RSTLLG 413 (426)
Q Consensus 408 ~~~~l~ 413 (426)
+++++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 886543
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=263.29 Aligned_cols=189 Identities=23% Similarity=0.333 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++.+|++..-+. ..++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.++... +++.++.+-|
T Consensus 3 L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALLY 79 (209)
T ss_pred chhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHHH
Confidence 455777765543 4699999999999999999999999999999999999999999999999988764 3445778889
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+-..+-+=+ .|++||+.|...... .+.+.++++++.+++..+.+ + +..+||.|||+|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-l----------p~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-L----------PVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-c----------chhhcchhHHHHHHHHHHHcCC
Confidence 999998864 599999998655333 35678899999998876543 2 4579999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
+|++||||||++||.+.+..+-..+.... ++-.||..||.+--+.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999999999999987764 4679999999976543
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=255.01 Aligned_cols=136 Identities=48% Similarity=0.769 Sum_probs=122.4
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.++...+....++.++|++|++.+|+. |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999987788889999999999999876 79999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts 356 (426)
...++++++++.+++.+ ..++.++.++..||||||||++||||++++|+++|||||||
T Consensus 80 --------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 --------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp --------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred --------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 13456777777776655 24566777889999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=268.89 Aligned_cols=190 Identities=24% Similarity=0.347 Sum_probs=127.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHH-HHHhcCCCCCccEEEEcC-------EeCCCC---CHHHHh-cceEEEe
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLA-KLLLRLYDPLSGCILVDD-------HDVQNI---RLDSLR-RHVGLVS 269 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl-~ll~g~~~p~~G~I~~~g-------~~i~~~---~~~~~r-~~i~~v~ 269 (426)
.++|+++||+|++||+++|+||||||||||+ ..+.. +|++.+.+ ..+... .....+ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4699999999999999999999999999995 44431 34332210 000000 001111 1244455
Q ss_pred cCCCC-C-cc-cHH---HHHcCCCCC-CCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHHHHHHHHHH
Q 014366 270 QDITL-F-SG-TVA---ENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 270 Q~~~l-f-~~-ti~---eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqkQRl~iARa 341 (426)
|++.. + +. ++. +...+.... ......+.. +.++.+ |+.. ..+..+.+||||||||++||||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERL---------GFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHH---------HHHHHC--CCCcccccCccCcCCHHHHHHHHHHHH
Confidence 54432 1 11 322 221110000 000011111 223333 3433 3566788999999999999999
Q ss_pred hcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eCCEEEEec
Q 014366 342 LYQNS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DNGKLEELN 407 (426)
Q Consensus 342 l~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g 407 (426)
++.+| +++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+..||++++| ++|+|+++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99998 5999999999999999999999999875 468999999999988899999999 999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=288.31 Aligned_cols=200 Identities=31% Similarity=0.402 Sum_probs=167.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.-++++|++++|+++ +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.-. -++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 459999999999765 57999999999999999999999999999999999999999999987531 259
Q ss_pred EEEecCCC-CCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDIT-LFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~-lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
||.+|+.. +++ .|+.|++.-..+ +..+..++..+...+....-. ..+...||||||-|+.+|+.++
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~--~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFP--DGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCc--cccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhc
Confidence 99999984 454 399999975432 222567777777776643322 2356799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEe-cccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL-NRSTLL 412 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~-g~~~~l 412 (426)
.+|.+|||||||+.||.++...+.++|.+.. -|||+||||..++. .|++++.+++ ++.+. |..++.
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999998874 49999999999997 6999999998 77665 554443
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=314.83 Aligned_cols=219 Identities=24% Similarity=0.393 Sum_probs=189.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~-~~~~~r~~ 264 (426)
..+.++|+++.|+.... +++++|+.|++||+.|+.|+|||||||++|++.|..+|++|++.++|.++..- +..+.+++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 45889999999987543 99999999999999999999999999999999999999999999999998754 33458999
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+||+||+..+++. |.||.+.+.....+... +.++..++..++.+..+. ....+|||+|+|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-----------~~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-----------QVRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-----------chhhCCCcchhhHHHH
Confidence 9999999999865 99999976543333332 335666677776665544 4579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC-ceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
-|++.+|++++|||||+|+||.+++.+++.+.+.+++ +.+|+.||.+++.+ .|||+.+|.+|++...|+++++.++.
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 9999999999999999999999999999999998764 59999999999997 79999999999999999999887553
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=244.97 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=156.5
Q ss_pred cEEEEeEEEEeCC----C-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCC
Q 014366 187 DVKFCNISFKYAD----N-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIR 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~----~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~----~i~~~~ 257 (426)
.+.++|++++|.- + .-++++++||+++.|||+++=||||||||||+++|.+-|.|++|+|++... |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 4788999888741 1 236999999999999999999999999999999999999999999998543 333333
Q ss_pred HHH----HhcceEEEecCCCCCc-ccHHHHHc-----CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 258 LDS----LRRHVGLVSQDITLFS-GTVAENIG-----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 258 ~~~----~r~~i~~v~Q~~~lf~-~ti~eni~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
+.+ .|+.||||+|--...+ -+..|-+. .|.+ .+...++....+.+.++.+-+-.|| +.+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~-~~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP-REVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC-HHHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 332 3556999999755443 24444432 2221 1112233445566666666665554 479
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeC
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
+||||+||+.|||.++.+-+||+|||||++||..+++.+.+.|.+.+ +|..+|=|-||-+.-+ .|||++-|..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999876 4788999999987765 6999988754
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=256.00 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=132.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---------cEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---------GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS 276 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~---------G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 276 (426)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|++.... ..+++++++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677777765432 2357899999999877
Q ss_pred ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEee
Q 014366 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILD 352 (426)
Q Consensus 277 ~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlD 352 (426)
++.. ..+++.++++. + + .......+||||||||++|||+++ .+|++++||
T Consensus 89 --------~~~~----~~~~~~~~l~~----------~-~---~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD 142 (197)
T cd03278 89 --------YSII----SQGDVSEIIEA----------P-G---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD 142 (197)
T ss_pred --------eeEE----ehhhHHHHHhC----------C-C---ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 2110 12334444443 1 1 123456799999999999999986 567999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 353 EATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
|||++||+.+...+.+.|+++.++.|+|+|||+++.+..||+++.+..
T Consensus 143 EP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 143 EVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999999998767899999999998889999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=259.44 Aligned_cols=194 Identities=26% Similarity=0.411 Sum_probs=139.5
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-----c-CC----CCCcc-----------EEEEcCEeCCCCCHH--
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-----R-LY----DPLSG-----------CILVDDHDVQNIRLD-- 259 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-----g-~~----~p~~G-----------~I~~~g~~i~~~~~~-- 259 (426)
.-|+|+|++|+.|..++|+|+||||||||++.+. + +. .|..+ -|.+|..++..-+..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998652 1 11 12222 356666665432111
Q ss_pred --------HHhc----------------ceEEEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcC
Q 014366 260 --------SLRR----------------HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314 (426)
Q Consensus 260 --------~~r~----------------~i~~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp 314 (426)
++|+ .+.|..++... ...|+.||+.|..... ..++..++ ++.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--~~~~~~~~---------L~~v- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--KIARKLQT---------LCDV- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--hHHHHHHH---------HHHc-
Confidence 0111 13333333332 2446666665532211 11222222 3332
Q ss_pred CCccc-ccCCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH
Q 014366 315 QGYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV 389 (426)
Q Consensus 315 ~g~~t-~~~~~g~~LSgGqkQRl~iARal~~~---p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~ 389 (426)
|++. .+++...+|||||+||++|||+|+++ |+++||||||++||+...+.+.+.|+++. ++.|+|+|||+++.+
T Consensus 157 -gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i 235 (261)
T cd03271 157 -GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235 (261)
T ss_pred -CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 4544 46777899999999999999999996 79999999999999999999999999875 468999999999999
Q ss_pred HhcCEEEEE------eCCEEEEeccc
Q 014366 390 MMAKRVFLL------DNGKLEELNRS 409 (426)
Q Consensus 390 ~~~D~i~vl------~~G~i~e~g~~ 409 (426)
..||++++| ++|+++++|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=251.16 Aligned_cols=189 Identities=22% Similarity=0.303 Sum_probs=131.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh----------------cCCCCCcc------
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL----------------RLYDPLSG------ 244 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~----------------g~~~p~~G------ 244 (426)
.|+++|. ++|++. .++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~~--~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKDQ--TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCcccC--cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 4667765 357543 4777776 7899999999999999999998 44455555
Q ss_pred --EEEEcCEeCCC-C--CHHHHhcceEEEecCCCCCcc--cHHHHHcCCCCCCCCCHHHHHHHHHHhchHH---------
Q 014366 245 --CILVDDHDVQN-I--RLDSLRRHVGLVSQDITLFSG--TVAENIGYRDLMTKIDMERVEHTARTANADE--------- 308 (426)
Q Consensus 245 --~I~~~g~~i~~-~--~~~~~r~~i~~v~Q~~~lf~~--ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~--------- 308 (426)
+|.+++.+-.. . .....++.+++++|++.+++. |..|.. ..++..++..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~---------------~~l~~~gl~~~~~~~~~~q 139 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM---------------NLLESAGFSRSNPYYIVPQ 139 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH---------------HHHHHcCCCCCCCcEEEEc
Confidence 55555532110 0 112345667888877766542 443332 2222222211
Q ss_pred -HHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEec
Q 014366 309 -FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIA 383 (426)
Q Consensus 309 -~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 383 (426)
.+..+. ++....++++.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.|+++.++.|+|++|
T Consensus 140 g~i~~l~-~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~ 218 (243)
T cd03272 140 GKINSLT-NMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT 218 (243)
T ss_pred CchHHhh-hccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 000000 1222345678899999999999999996 4689999999999999999999999999986677899999
Q ss_pred cChHHHHhcCEEEEEe
Q 014366 384 HHLETVMMAKRVFLLD 399 (426)
Q Consensus 384 H~~~~~~~~D~i~vl~ 399 (426)
|+.+....||++++|+
T Consensus 219 h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 219 FRPELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHhhCCEEEEEE
Confidence 9988778999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=245.87 Aligned_cols=190 Identities=18% Similarity=0.197 Sum_probs=138.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~-~Ge~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58889987 77542 56777654 589999999999999999999994 665555555543 11112222344567
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHH--HHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA--RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
|++++|++.-.. .+..++ ..+.+...+.. +..+ +++.++.++.+||||||||++||||+
T Consensus 78 v~~~f~~~~~~~----~~~r~~----gl~~~~~~~~~~l~~g~-----------l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 78 VSFTFQLGGKKY----RVERSR----GLDYDQFTRIVLLPQGE-----------FDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEEECCeEE----EEEEec----CCCHHHHHHhhhhhhcc-----------hHHHhcCCccccCHHHHHHHHHHHHH
Confidence 999999874221 122222 23333333221 2222 34455667789999999999999999
Q ss_pred cC----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 343 YQ----------NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 343 ~~----------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
+. +|+++||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+++++++|-
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 84 6789999999999999999999999998865 789999999999886 699999999985
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-32 Score=234.69 Aligned_cols=210 Identities=27% Similarity=0.374 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++||+.+- -|-.+|.++..||++-+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++-+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 5677776532 356789999999999999999999999999999988 679999999999999999999888899
Q ss_pred EecCCC-CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC--
Q 014366 268 VSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ-- 344 (426)
Q Consensus 268 v~Q~~~-lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~-- 344 (426)
+.|+.. .|...|...+.+..|.. .-..++..++... +++..+++...+|||||.|||-+|-..++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~-~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDK-TRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchH-HHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998765 67889999998866531 1112233333333 45566667788999999999999998875
Q ss_pred ---CC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-HHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 345 ---NS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-TVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 345 ---~p--~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|| ++||+|||.++||...+..+-..|.++. .+.+|||.+||++ +++.||+++.+++|++...|+.++..+.+
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~ 223 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChH
Confidence 33 7999999999999999999999998886 4799999999996 67899999999999999999988877654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=258.35 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
-++++|++.. ..++|+||++++||+++|.|--|||+|-++++|.|..++.+|+|.+||+++.-.++. ..+..|
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4667776531 157899999999999999999999999999999999999999999999998877655 567789
Q ss_pred EEEecCCC---CC-cccHHHHHcCCCCCCCCCHH-HHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT---LF-SGTVAENIGYRDLMTKIDME-RVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~---lf-~~ti~eni~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iA 339 (426)
+|||.|.. +| ..+|++|+.+.... ..... -+....+.....+++..+ +..+. ......+||||.+||+.||
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~-~~~~~~~i~~~~e~~~~~~~~~~l--~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLR-RFSRRGLIDRRKERALAERYIRRL--RIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhh-hhccccccChHHHHHHHHHHHHhc--CcccCCccchhhcCCchhhhhHHHH
Confidence 99999864 66 55999999875211 10000 122233333344555554 22221 2346789999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|.|..+|++|||||||-|+|.-++.+|.+.|+++. +|++||+||-++.++- .||||+||++|+++..=+.++
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999986 5799999999998875 899999999999987554444
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=245.24 Aligned_cols=361 Identities=18% Similarity=0.240 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 014366 22 SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELL---KKRKMKALIPQ 98 (426)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 98 (426)
+-..+.+.+.++..+...+.....+.+...=...+++-++|-.|+..+.+.++.++..+....... +...+..+..+
T Consensus 276 lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleq 355 (728)
T KOG0064|consen 276 LTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQ 355 (728)
T ss_pred HHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777777888888889999999999999999988887776654332211 11111111111
Q ss_pred HHH-HHHHHHHHHH----HHHHHHHhCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014366 99 TVQ-LIYFGALFIL----CGGSLLVSGGSFD--------GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165 (426)
Q Consensus 99 ~~~-~~~~~~~~~~----~~g~~lv~~g~l~--------~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~ 165 (426)
+.. -.+.++-.++ .+..-....+... ...++..=-++......+..++..+.++.+-.....|++++
T Consensus 356 F~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~m 435 (728)
T KOG0064|consen 356 FVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTM 435 (728)
T ss_pred HHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111 0000000000 0000011111111 11122222223333456667777788888888888888765
Q ss_pred hcCcc-------------cccCC------CCCCCCC-----CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEE
Q 014366 166 TKFKS-------------KVIEK------PDAVSLD-----HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALI 221 (426)
Q Consensus 166 l~~~~-------------~~~~~------~~~~~~~-----~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~iv 221 (426)
++.-. +..+. .+..+.+ .....|.++|+-.--|+++ .++..++|+|++|-.+.|+
T Consensus 436 f~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLIt 514 (728)
T KOG0064|consen 436 FSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLIT 514 (728)
T ss_pred HHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEecCCceEEEE
Confidence 43110 00000 0000000 0123589999988877764 5899999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC-----CCCCCHHH
Q 014366 222 GPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL-----MTKIDMER 296 (426)
Q Consensus 222 G~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~-----~~~~~~~~ 296 (426)
||||||||+|+++|.|++|...|...+- .+.++-|+||.|+.--||.||-|-|+.. ..+..+++
T Consensus 515 GPNGCGKSSLfRILggLWPvy~g~L~~P-----------~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~d 583 (728)
T KOG0064|consen 515 GPNGCGKSSLFRILGGLWPVYNGLLSIP-----------RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQD 583 (728)
T ss_pred CCCCccHHHHHHHHhccCcccCCeeecC-----------CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHH
Confidence 9999999999999999999988876541 1345999999999877899999988643 13567888
Q ss_pred HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC
Q 014366 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (426)
Q Consensus 297 ~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~ 376 (426)
++..++.+.++..+++ ..|+|...+- -.-||||||||+++||.++++|+.-+|||.||+..++-|..+.+..+.. +
T Consensus 584 L~~iL~~v~L~~i~qr-~~g~da~~dW-kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--g 659 (728)
T KOG0064|consen 584 LEAILDIVHLEHILQR-EGGWDAVRDW-KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--G 659 (728)
T ss_pred HHHHHHHhhHHHHHHh-ccChhhhccH-HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--C
Confidence 9999999999887766 4466655443 3579999999999999999999999999999999999999999998775 6
Q ss_pred ceEEEeccChHHHHhcCEEEEE
Q 014366 377 HTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 377 ~tvi~itH~~~~~~~~D~i~vl 398 (426)
-+.|-||||++..++-...+-.
T Consensus 660 i~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 660 ISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred ceEEEeecCccHHHHHHHHHhc
Confidence 7999999999998765555544
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=246.36 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=144.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCE-eCCCCC-H-HHHh
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDH-DVQNIR-L-DSLR 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~-~i~~~~-~-~~~r 262 (426)
.|+++|. ++|.+. .++. .+. ..+++|+||||||||||+++|++++.|+ .|++++.|. ++-... . ...+
T Consensus 5 ~~~~~~f-~~~~~~--~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~ 76 (251)
T cd03273 5 EIILDGF-KSYATR--TVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITK 76 (251)
T ss_pred EEEEeCc-cccCcC--Eeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcE
Confidence 4666665 456432 1111 233 4599999999999999999999999886 468888776 432111 1 1224
Q ss_pred cceEEEecCCC---------CC-cccHHHHHcCCCCC------CCCCHHHHHHHHHHhchH--HH--------HHhcCCC
Q 014366 263 RHVGLVSQDIT---------LF-SGTVAENIGYRDLM------TKIDMERVEHTARTANAD--EF--------VRTLPQG 316 (426)
Q Consensus 263 ~~i~~v~Q~~~---------lf-~~ti~eni~~~~~~------~~~~~~~~~~~~~~~~l~--~~--------~~~lp~g 316 (426)
..+++++|++. +. ..||.+|+..+... .....+++.++++.+++. .. +..+- .
T Consensus 77 ~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~-~ 155 (251)
T cd03273 77 ASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVL-N 155 (251)
T ss_pred EEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHH-H
Confidence 57999999862 22 34888888654311 112345666677776653 00 00000 0
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhc
Q 014366 317 YNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMA 392 (426)
Q Consensus 317 ~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 392 (426)
........+.+||||||||++||||++ .+|+++|+||||++||+.+.+.+.+.|+++.++.|+|+|||+.+.+..|
T Consensus 156 ~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 156 MGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNA 235 (251)
T ss_pred hHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhC
Confidence 012344567899999999999999997 6889999999999999999999999999987778999999998888899
Q ss_pred CEEEEEe
Q 014366 393 KRVFLLD 399 (426)
Q Consensus 393 D~i~vl~ 399 (426)
|+++-+.
T Consensus 236 d~v~~~~ 242 (251)
T cd03273 236 NVLFRTR 242 (251)
T ss_pred CEEEEEE
Confidence 9998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=234.08 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=128.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHh----cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCC-----CCCc-cc
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLL----RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-----TLFS-GT 278 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~----g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~-----~lf~-~t 278 (426)
++++.+| +++|+||||||||||+++|. |..+|++|.+..+...+.. ...+..+++++|++ .++. .|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4567777 99999999999999999994 9988988877622222222 23456799999998 3333 38
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH------HHHHHHhcCCCCEEEee
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR------LAIARALYQNSSVLILD 352 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR------l~iARal~~~p~illlD 352 (426)
+.||+.+.. .+++.+ .+ ++.+.+||+||+|| ++||||++.+|++++||
T Consensus 93 ~~~~~~~~~------~~~~~~---------~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 93 ILENVIFCH------QGESNW---------PL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred Hhhceeeec------hHHHHH---------HH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 999987641 222221 22 23457999999996 79999999999999999
Q ss_pred ccCCCCCHHHHH-HHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCC
Q 014366 353 EATSALDSRSEL-LVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 353 Epts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|||++||+.+.. .+.+.++++.+ +.|+|++||+++.+..||++++|++.
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999999999 99999998864 67999999999988899999999753
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-30 Score=239.43 Aligned_cols=186 Identities=18% Similarity=0.265 Sum_probs=133.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-cce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 265 (426)
.|+++|.. +|++. .+++++++ ++++|+|||||||||++++|. +++|.+.. ..| +++
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC--eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhH
Confidence 57788875 77643 58898887 899999999999999999997 33443321 223 579
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC--------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK--------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++++|+..+++. |+++++.+...... ...+..........+. .+..+|++.++ ....||+|||||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~-~~~~L~~~~~~----~~~~lS~G~~~r~ 136 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVE-QIAQMPKKSWK----NISNLSGGEKTLS 136 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEE-Eeecccccccc----chhhcCHHHHHHH
Confidence 999999887654 78877765432110 0000000000000111 12233444443 4568999999999
Q ss_pred HHHHHhcC----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 337 AIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 337 ~iARal~~----~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+....|||+++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998777899999999887789999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=252.51 Aligned_cols=196 Identities=26% Similarity=0.396 Sum_probs=162.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.-|.++||+|.|+++. .+++++||-|..++.+|+|||||+|||||+|+++|.+.|+.|.|.-.-. .++
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 3589999999998764 7999999999999999999999999999999999999999999864332 234
Q ss_pred EEEecCCC---CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDIT---LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~~---lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++..|+.. .++.|..|++.-..+. ....+++...+.++++....+..| ..+||+|||.||++||.+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLA 524 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHH
Confidence 45555433 2456788887522111 245677888899988876555544 479999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEe
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
+++|.+|+|||||++||.++...+.++|.++. .+||+||||...+. .+++|++.++|.+...
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999998874 37999999999996 6999999999987643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=272.52 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=150.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHH---------HHhcCCCCCcc----E----EEEc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAK---------LLLRLYDPLSG----C----ILVD 249 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~---------ll~g~~~p~~G----~----I~~~ 249 (426)
.+++++++. ..|+++||+|++||+++|+|+||||||||++ .+.|...+..+ . |.+|
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 477777652 3799999999999999999999999999999 56665433111 1 3444
Q ss_pred CEeCCCCCH----------HHHh---------c-----ceEEEecC------------------C---------------
Q 014366 250 DHDVQNIRL----------DSLR---------R-----HVGLVSQD------------------I--------------- 272 (426)
Q Consensus 250 g~~i~~~~~----------~~~r---------~-----~i~~v~Q~------------------~--------------- 272 (426)
-.++..... .++| + ...+.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 433322110 0222 1 12233332 0
Q ss_pred -----CCCcc-cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHh
Q 014366 273 -----TLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 273 -----~lf~~-ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal 342 (426)
..+.+ ||.||+.++.... ..+.+++.+.+ +.++.+ |++.. +++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 8888887753210 00112222222 123332 66665 6888899999999999999999
Q ss_pred c---CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEe------CCEEEEecccccc
Q 014366 343 Y---QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLD------NGKLEELNRSTLL 412 (426)
Q Consensus 343 ~---~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~------~G~i~e~g~~~~l 412 (426)
+ .+|+++||||||++||+.+.+.+.+.|+++. ++.|||+|||+++.+..||++++|. +|+++..|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999999885 4789999999999998999999996 7899999999877
Q ss_pred cc
Q 014366 413 GS 414 (426)
Q Consensus 413 ~~ 414 (426)
.+
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 64
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=267.95 Aligned_cols=201 Identities=28% Similarity=0.378 Sum_probs=168.5
Q ss_pred CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEEcCEeCCCCCHHHHhcceEEEecCCC-CCc
Q 014366 200 NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LFS 276 (426)
Q Consensus 200 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~ 276 (426)
+.+.+|+||+=-++||-.+||+|+||||||||+++|+|-.. ..+|+|+++|.+..+ +..++.+|||.|+.. +-.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34569999999999999999999999999999999998753 357999999998654 567889999999775 445
Q ss_pred ccHHHHHcCCCCC---CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC-CE
Q 014366 277 GTVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS-SV 348 (426)
Q Consensus 277 ~ti~eni~~~~~~---~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p-~i 348 (426)
.||||-+.|.... ++.+. +.++++++..++.++- |..||..|..||..||+|+.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 6999999874321 12232 3456777777777665 44688899999999999999999999999 88
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH--HHhcCEEEEEeC-CEEEEecccc
Q 014366 349 LILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET--VMMAKRVFLLDN-GKLEELNRST 410 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~D~i~vl~~-G~i~e~g~~~ 410 (426)
|+|||||||||+++...|++.++++. .|+||++.-|+++. .+..|+++.|++ |+.+..|+..
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 89999999999999999999999986 58999999999975 368999999986 7899998764
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=228.24 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=137.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-C-C-----CCCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-V-Q-----NIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~-i-~-----~~~~~ 259 (426)
.|+++|. .+|.+. . ++...++ +++|+||||||||||+.+|+++..+..|++..++.+ + . ..+..
T Consensus 3 ~i~l~nf-~~~~~~--~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR--H-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC--e-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 4777886 556432 1 2233344 999999999999999999999998888887654421 1 0 01111
Q ss_pred HHhcceEEEecCCC--CCcccHHHHHc-CCCCCCCCCHHHHHHHHHHhchHH--------------HHHhcCCCcccccC
Q 014366 260 SLRRHVGLVSQDIT--LFSGTVAENIG-YRDLMTKIDMERVEHTARTANADE--------------FVRTLPQGYNTHIG 322 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~ti~eni~-~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~lp~g~~t~~~ 322 (426)
...-.+.|..|++. ++..++++... +.......+.+++.+.++.+++.. +.+..|.+. ..
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~---~~ 150 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGK---RF 150 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcch---hh
Confidence 22233455555443 23344443321 111112345666777778877742 222222111 11
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC----CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQN----SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~----p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~v 397 (426)
....+||||||||++||||++.+ |+++||||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.+..||++++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~ 230 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVG 230 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEE
Confidence 23478999999999999999864 899999999999999999999999999865 6899999999988889999999
Q ss_pred EeC
Q 014366 398 LDN 400 (426)
Q Consensus 398 l~~ 400 (426)
|..
T Consensus 231 ~~~ 233 (247)
T cd03275 231 VYR 233 (247)
T ss_pred EEe
Confidence 864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=259.87 Aligned_cols=103 Identities=28% Similarity=0.445 Sum_probs=93.9
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|++. .+++...+||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. +++|||+|||+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5654 468889999999999999999999999 9999999999999999999999999885 4789999999999999
Q ss_pred hcCEEEEE------eCCEEEEeccccccccCcch
Q 014366 391 MAKRVFLL------DNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 391 ~~D~i~vl------~~G~i~e~g~~~~l~~~~~~ 418 (426)
.||+|++| ++|++++.|+++++.+++.+
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s 931 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEAS 931 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCccc
Confidence 99999999 79999999999988876544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=227.28 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=175.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC-CCCCHHHHhc-
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV-QNIRLDSLRR- 263 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i-~~~~~~~~r~- 263 (426)
.-++++|++..-..+ ...+++|||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...+..++|+
T Consensus 256 ~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 458999999865433 4689999999999999999999999999999999999999999999999997 6667777654
Q ss_pred ceEEEecCCC---C-CcccHHHHHcCCCCCCC-------CCHHHHHHHHHHhchHHHHHhc---CCCcccccCCCCCCCC
Q 014366 264 HVGLVSQDIT---L-FSGTVAENIGYRDLMTK-------IDMERVEHTARTANADEFVRTL---PQGYNTHIGPRGSSLS 329 (426)
Q Consensus 264 ~i~~v~Q~~~---l-f~~ti~eni~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~l---p~g~~t~~~~~g~~LS 329 (426)
.++|||.|.+ + .+.|+.||+.+.....+ .+...+.+..+ +.++++ +.+- ..+..+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~----~~~a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSP----DAPARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCC----CcchhhcC
Confidence 5999999984 3 46799999976542211 12233332222 122221 2222 23467999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||++||+-+||-|.++|++||..+||-|||..+.+.|.+.|.+.+ +++.|++||-+++++. .||||.||.+|+++...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999999998875 5789999999998874 89999999999999888
Q ss_pred cccc
Q 014366 408 RSTL 411 (426)
Q Consensus 408 ~~~~ 411 (426)
++++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 7765
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-27 Score=208.24 Aligned_cols=221 Identities=22% Similarity=0.302 Sum_probs=174.2
Q ss_pred EEEEeEEEEeC--CCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHH
Q 014366 188 VKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 188 i~~~~v~~~y~--~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~ 261 (426)
+.++|++..+. .+...+++++|++++.||+-++||+||||||-+.|.|+|..+. +.-...+++.++-.+++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 44566665553 3334689999999999999999999999999999999998763 45677889999989988887
Q ss_pred hc----ceEEEecCCC--CCc-cc----HHHHHcCC----CCC--CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 262 RR----HVGLVSQDIT--LFS-GT----VAENIGYR----DLM--TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 262 r~----~i~~v~Q~~~--lf~-~t----i~eni~~~----~~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
|+ .|+++||+|. |-+ .+ +.+||-.. +.. -.....+..+.+.++|+.|--+- +...
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--------M~SY 155 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--------MRSY 155 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH--------HHhC
Confidence 75 5789999996 322 23 34555321 110 12234556677888888654322 1223
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.+|--||-|+|.||.|++.+|++||.||||+++|+.+..+|.+.|.++.+ +.|+++++||+..+. .||+|-||--|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 468999999999999999999999999999999999999999999988853 579999999999885 89999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+-+|.++.+++.+.+
T Consensus 236 Q~~ESa~~e~l~~~P 250 (330)
T COG4170 236 QTVESAPSEELVTMP 250 (330)
T ss_pred ccccccchhHHhcCC
Confidence 999999988877654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=229.12 Aligned_cols=196 Identities=23% Similarity=0.357 Sum_probs=165.2
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
++.+++.+|+|.|+.++.+.+.+++++++.-+.+++||+||+||||++|++.+-..|.+|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 356999999999987654689999999999999999999999999999999999999999887754 667
Q ss_pred eEEEecCCC-CCcc--cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 265 VGLVSQDIT-LFSG--TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 265 i~~v~Q~~~-lf~~--ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+|-+|... .++. +..|-.. ...++..++++++.+...|++..+...+ ...||||||=||++|..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~--~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFME--KSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAAC 496 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHH--HhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHH
Confidence 999999654 2333 2333332 1223457889999999888876665432 36899999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
...+|.+|+|||||+.||.++-..+.++|+.+.. .||+|||+.+.+. .|+.+++.++|++..
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999998754 6999999999997 699999999999964
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=243.63 Aligned_cols=97 Identities=28% Similarity=0.458 Sum_probs=88.6
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcC---CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQ---NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~---~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|++. .++++..+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|+++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 4688899999999999999999997 599999999999999999999999999885 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecccccc
Q 014366 391 MAKRVFLL------DNGKLEELNRSTLL 412 (426)
Q Consensus 391 ~~D~i~vl------~~G~i~e~g~~~~l 412 (426)
.||+|++| ++|++++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999988765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-26 Score=222.25 Aligned_cols=170 Identities=27% Similarity=0.467 Sum_probs=132.9
Q ss_pred cceeeeEE-----EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCC-CCcc
Q 014366 204 VLDQLNLH-----IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LFSG 277 (426)
Q Consensus 204 ~l~~isl~-----i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~ 277 (426)
.+.+..|+ |..||+++++||||-||||++++|+|.++|++|+ ..+ -+++|=||--. -|++
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCC
Confidence 34455555 4567899999999999999999999999999998 222 24888888543 3789
Q ss_pred cHHHHHcCCCCCCCCCHH-HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC
Q 014366 278 TVAENIGYRDLMTKIDME-RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts 356 (426)
||++-+.-..+.. +... -..+.++-.++++.+ ..+..+|||||.||||||-||.+++++++||||++
T Consensus 417 tV~~~l~~~~~~~-~~~s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA 484 (591)
T COG1245 417 TVEDLLRSAIRSA-FGSSYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 (591)
T ss_pred cHHHHHHHhhhhh-cccchhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhccccCEEEecCchh
Confidence 9999885432211 1111 122344444444444 44678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe
Q 014366 357 ALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 357 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
.||.+.+-.+.+.|++.. .++|.++|-||+-.+. .+||++|++
T Consensus 485 ~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 485 YLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999875 3589999999999998 599999996
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-26 Score=228.49 Aligned_cols=222 Identities=22% Similarity=0.309 Sum_probs=145.3
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
...++++|++++|.+. .+++|+.|++.+|+.+||+|+|||||||++++|.|-..|..-++-+--.+ +++.+..+. -
T Consensus 73 s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~-a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQ-A 148 (614)
T ss_pred cccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHH-H
Confidence 3469999999999764 69999999999999999999999999999999999988865544321111 111111111 1
Q ss_pred eEEEecCCCCCc---ccHHHHHcCCCCCCC-CCHHHHHHHHHHhchH-------HHHHhcCCCcc-cccCCCCCCCChHH
Q 014366 265 VGLVSQDITLFS---GTVAENIGYRDLMTK-IDMERVEHTARTANAD-------EFVRTLPQGYN-THIGPRGSSLSGGQ 332 (426)
Q Consensus 265 i~~v~Q~~~lf~---~ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~-------~~~~~lp~g~~-t~~~~~g~~LSgGq 332 (426)
+-++.+...=-. .--.|++.-.....+ ...+.+.+.+...+.+ ..+..+ |.. +.......+|||||
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchH
Confidence 111111000000 001111111100000 0001111111111111 111111 322 34455678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCE-EEEecccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK-LEELNRST 410 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~-i~e~g~~~ 410 (426)
|.|++|||||+.+|++|+|||||++||.++...+.+.|.+.... ++++++|..+++. .|..|+.|++++ +...|+.+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence 99999999999999999999999999999999999999887433 8999999999996 799999999999 45677765
Q ss_pred ccc
Q 014366 411 LLG 413 (426)
Q Consensus 411 ~l~ 413 (426)
.+.
T Consensus 306 qy~ 308 (614)
T KOG0927|consen 306 QYV 308 (614)
T ss_pred HHh
Confidence 444
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-26 Score=209.71 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=119.8
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~-~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
++++++++.+| +.+|+||||||||||+..|.-.+..... ....|..+.++ ....-...+.+++|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46678888887 8899999999999999998744332221 11112211110 00011345888888776555 2
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh----cCCCCEEEeeccCCCCC
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALD 359 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal----~~~p~illlDEpts~LD 359 (426)
.....+.+.+. ++++. .....++..+||+|||||++||||+ +.+|+++||||||++||
T Consensus 84 ----~~~~~~~~~~~---------~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 84 ----PLCVLSQDMAR---------SFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred ----cCCHHHHHHHH---------HHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 11111122222 23322 2223456789999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHHHHc-C---CceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 360 SRSELLVRQAVDRLL-G---HHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 360 ~~~~~~i~~~l~~~~-~---~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
+.+...+.+.|.+.. + ++|+|++||+++.+..+|+|-+|..++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999998863 2 258999999999998889999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-25 Score=216.95 Aligned_cols=192 Identities=27% Similarity=0.427 Sum_probs=153.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.-+-+.||+|.|++. ++.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+.+-+ -|-+|
T Consensus 585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 457889999999876 579999999999999999999999999999999999999999987532 24469
Q ss_pred EEEecCCC--CC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDIT--LF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~~--lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
|+..|... |- ..|--|.+.-.. +.+.++.++.+-..++....... ....||||||-||++|-.-
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F---Nlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF---NLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELA 719 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc---CCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHh
Confidence 99999764 32 347777774321 23456666777666664432221 3578999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH--hcCEEEEEeCCEEEE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM--MAKRVFLLDNGKLEE 405 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~D~i~vl~~G~i~e 405 (426)
++.|+||||||||++||.++...+.++|.+... .||||||+-..+. .| ..+|+++-.|-|
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~G--gVi~VsHDeRLi~eT~C-~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNG--GVIMVSHDERLIVETDC-NLWVVENQGIDE 781 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccC--cEEEEecccceeeecCc-eEEEEccCChhh
Confidence 999999999999999999999999999998753 6999999999885 45 456666655544
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-25 Score=219.66 Aligned_cols=200 Identities=25% Similarity=0.334 Sum_probs=142.4
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
..+|..++++..|+++ .+|++-++++..|..+||||+||+|||||+++|+. |.|..-..+ .++|.-
T Consensus 78 ~~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred ccceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 3579999999999864 59999999999999999999999999999999997 444332211 111111
Q ss_pred eEEEecCC-CCCcccHHHHHcCCCC-C-CCCCHHHHHH-HHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 265 VGLVSQDI-TLFSGTVAENIGYRDL-M-TKIDMERVEH-TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 265 i~~v~Q~~-~lf~~ti~eni~~~~~-~-~~~~~~~~~~-~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+++-.- .+-..+-+.-+..-.. . ...+.+++.. ++.-.+..+.....| ..+||||=|-|++|||
T Consensus 144 --~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 --DTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALAR 211 (582)
T ss_pred --chHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHH
Confidence 111111 1122222222211100 0 0112333433 566666666555555 4799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eecccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLL 412 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l 412 (426)
||..+||+|||||||+.||..+...+.+.|..+. .|+|+||||-.++. .|.-|+.+++-++- ..|+.+.+
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999999999999999999999998864 79999999999996 69999999887663 45665443
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=183.92 Aligned_cols=204 Identities=23% Similarity=0.262 Sum_probs=153.6
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-CC------
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IR------ 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~-~~------ 257 (426)
...|++.++.|+|+... |++-|+|++++.|....+||.||||||||+|+|+|-.-.-.|.|.+.|.+--. -.
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 34699999999998764 79999999999999999999999999999999999887778999999976422 10
Q ss_pred ----HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 258 ----LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 258 ----~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
-.+|++..++--.-|.--..++.+-| ++-. ..+.++-++..+.. |-.+.-+...+|-|||
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~--g~dp~Rre~LI~iL-------------DIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG--GDDPERREKLIDIL-------------DIDLRWRMHKVSDGQR 153 (291)
T ss_pred eeEecccccccccccccccccccccHHHHH-hhcc--CCChhHhhhhhhhe-------------eccceEEEeeccccch
Confidence 01233333332211111122454433 3221 11233333333322 2223345678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
+||.|+..|++.=++|+|||-|--||...+..+++.+++.. +++||+..||-.+-++ ...+++.|.+|+++.
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999999999999999998865 4689999999998775 799999999999986
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=186.59 Aligned_cols=85 Identities=25% Similarity=0.268 Sum_probs=75.6
Q ss_pred HHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEecc
Q 014366 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAH 384 (426)
Q Consensus 310 ~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH 384 (426)
+..+|+|-.|.+ ||||||||++|||+++ .+|+++++|||+++||+...+.+.+.+.++.+ +.|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 445677766665 9999999999999995 79999999999999999999999999998754 489999999
Q ss_pred ChHHHHhcCEEEEEeC
Q 014366 385 HLETVMMAKRVFLLDN 400 (426)
Q Consensus 385 ~~~~~~~~D~i~vl~~ 400 (426)
+++.+..+|+++.+..
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9998889999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-23 Score=190.18 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=109.0
Q ss_pred cceeeeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC
Q 014366 204 VLDQLNLHIRAGE-TVALIGPSGGGKSTLAKLLL--------RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 204 ~l~~isl~i~~Ge-~~~ivG~sGsGKSTLl~ll~--------g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 274 (426)
.+-++||++.+|+ +++|+||||||||||++.|. |.+-|....+ .++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe
Confidence 3557899999996 79999999999999999998 5554432111 13333333110
Q ss_pred CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 275 f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
++ ..+.+ .++..++|+||||+..+++++ .+|+++++|||
T Consensus 79 ----------lg-------------------~~~~l-----------~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp 117 (200)
T cd03280 79 ----------IG-------------------DEQSI-----------EQSLSTFSSHMKNIARILQHA-DPDSLVLLDEL 117 (200)
T ss_pred ----------cC-------------------chhhh-----------hcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCC
Confidence 00 00001 113368999999999999985 89999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEec
Q 014366 355 TSALDSRSELLVRQ-AVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 355 ts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
|+++|+.....+.. .++++. .+.|+|++||+.+....||++++|++|+++..+
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999999988864 566654 368999999997766789999999999997653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=189.41 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=114.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-h-----cceEEEecCCCCCccc-
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-R-----RHVGLVSQDITLFSGT- 278 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r-----~~i~~v~Q~~~lf~~t- 278 (426)
+++.+++.+| +.+|+||||||||||+..|.-..-...... ... ....++ + ..|-..++... ..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~~---~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGNP---GNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeCC---Ccc
Confidence 5566666665 789999999999999998875542211100 000 011111 1 11222221110 01
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH----hcCCCCEEEeecc
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA----LYQNSSVLILDEA 354 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa----l~~~p~illlDEp 354 (426)
..+|+.+. .+.+.+.+....... +.+..+|.+.+. -..++.+||||||||+.+|++ ++.+|+++|+|||
T Consensus 85 ~~~n~~~~-----~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 85 QVDNLCQF-----LPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred ccCCceEE-----EchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 22333321 123444444444333 555566655442 355778999999999887755 4689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcC--C-ceEEEeccChHHH-HhcC--EEEEEeCCE
Q 014366 355 TSALDSRSELLVRQAVDRLLG--H-HTVLVIAHHLETV-MMAK--RVFLLDNGK 402 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~~--~-~tvi~itH~~~~~-~~~D--~i~vl~~G~ 402 (426)
|++||+.++..+.+.+.+..+ + .|+|++||++... ..|| +|++|++|+
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999999988753 3 4799999998655 4555 888898886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=190.30 Aligned_cols=76 Identities=28% Similarity=0.375 Sum_probs=70.1
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~----~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
.|||||+||+++|++++. +|+++++||||++||+.+...+.+.++++.++.|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998877789999999999878999999999874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-22 Score=218.28 Aligned_cols=202 Identities=25% Similarity=0.322 Sum_probs=165.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-c
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (426)
..+|+|+|.-++||+.+.+.||.|||||||++.++|-.+- ..|+|.+||.+.++... ++.++|++|+...|+ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3699999999999999999999999999999999997753 35699999999988755 778999999887775 5
Q ss_pred cHHHHHcCCCCCC-------CCCHHHH-----HHHHHHhchHHHHHhcCCCcccccCCC-CCCCChHHHHHHHHHHHhcC
Q 014366 278 TVAENIGYRDLMT-------KIDMERV-----EHTARTANADEFVRTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 278 ti~eni~~~~~~~-------~~~~~~~-----~~~~~~~~l~~~~~~lp~g~~t~~~~~-g~~LSgGqkQRl~iARal~~ 344 (426)
||+|-+.|..+.. +.++.+. +..++..|+ ....||.+|.+ ....|||||+||++|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL-------~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGL-------DHCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCc-------hhhccceecccccccccCcccceeeeeeeeec
Confidence 9999998753321 1122221 123333333 33578999865 56899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChH--HHHhcCEEEEEeCCEEEEeccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLE--TVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|+++.+||+|.|||..|.-++.+.|+++.+ +.|.++.-|+++ .....|.|++|.+|+++.+|+.++..
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 9999999999999999999999999999853 678888888874 45689999999999999999876543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=199.04 Aligned_cols=189 Identities=31% Similarity=0.413 Sum_probs=131.4
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHHH
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLDS 260 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~~ 260 (426)
++..+|+.+. ..|..+- ..++|+++||+||||-||||-+|+|+|.+.|.=|+-. +.|..+.++ .+.
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~Y-F~~ 155 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY-FKK 155 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHH-HHH
Confidence 4567787542 1222221 2468999999999999999999999999999877631 111111110 000
Q ss_pred Hh-------cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 261 LR-------RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 261 ~r-------~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
+. .++-||.--|..+.|+|.|-+.-.. +.-..++.++++ +++..+++...+|||||-
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d--------------e~g~~devve~l--~L~nvl~r~v~~LSGGEL 219 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD--------------ERGKFDEVVERL--GLENVLDRDVSELSGGEL 219 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhh--------------hcCcHHHHHHHh--cchhhhhhhhhhcCchHH
Confidence 11 1122332234445666666653211 111223333333 444455557889999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEe
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
||+|||-|++++++++++|||||-||...+-...+.++++.+ +++||+|.||+..+. .+|-|.++-
T Consensus 220 Qr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999999976 699999999999998 589988874
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=189.41 Aligned_cols=197 Identities=29% Similarity=0.444 Sum_probs=152.4
Q ss_pred CCccEEEEeEEEEeCCC------------------------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-
Q 014366 184 INGDVKFCNISFKYADN------------------------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL- 238 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~------------------------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~- 238 (426)
..+.+.++++++.|.+. ...+++|+||+|++|+.++|+|+|||||||++++|+|.
T Consensus 354 L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 354 LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 34567888888776321 23589999999999999999999999999999999984
Q ss_pred -------CCCCccEEEEcCEeCCCCCHHHHhcceEEEecC--CCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHH
Q 014366 239 -------YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD--ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309 (426)
Q Consensus 239 -------~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~--~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (426)
|+|++|.|.+--..++ +.+|-+ |.+=..|+.|.+.-- ..|.....+.+..+++.+-
T Consensus 434 ~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep~f~~~tilehl~s~----tGD~~~AveILnraGlsDA 498 (593)
T COG2401 434 KGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLRSK----TGDLNAAVEILNRAGLSDA 498 (593)
T ss_pred hcccccccCCCCCceeccccchh-----------hccCcccccccCchhHHHHHhhc----cCchhHHHHHHHhhccchh
Confidence 6799999987432221 344443 332234888887421 1233345667888888765
Q ss_pred HHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChH
Q 014366 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLE 387 (426)
Q Consensus 310 ~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~ 387 (426)
+-- -.....||.|||.|..||+++...|.+++.||..|.||+.|..++.+.+.++. .+.|++++|||++
T Consensus 499 vly---------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 499 VLY---------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hhh---------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 421 12457999999999999999999999999999999999999999999999986 4789999999999
Q ss_pred HHH--hcCEEEEEeCCEEE
Q 014366 388 TVM--MAKRVFLLDNGKLE 404 (426)
Q Consensus 388 ~~~--~~D~i~vl~~G~i~ 404 (426)
... .-|+++.+.=|+..
T Consensus 570 v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 570 VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHhccCCceeEEeeccccc
Confidence 986 37999988777654
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-21 Score=170.93 Aligned_cols=136 Identities=25% Similarity=0.328 Sum_probs=101.0
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE-EEecCCCCCcccHHHHHcCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYR 286 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eni~~~ 286 (426)
.++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.+ .+++...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3445556679999999999999999998766655555544310 00 011 111111101
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC----CCCEEEeeccCCCCCHHH
Q 014366 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRS 362 (426)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~----~p~illlDEpts~LD~~~ 362 (426)
+.. -.+||+||+||+++||++.. +|+++|+|||++++|+..
T Consensus 72 -----------------------i~~------------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~ 116 (162)
T cd03227 72 -----------------------IFT------------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRD 116 (162)
T ss_pred -----------------------ehh------------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHH
Confidence 000 01399999999999999986 789999999999999999
Q ss_pred HHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 363 ELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 363 ~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
...+.+.+.+.. ++.++|++||+++....+|+++.|+.
T Consensus 117 ~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 117 GQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999999998764 35799999999999999999999964
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=215.87 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=94.9
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~---p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|+.. .+|++..+|||||.|||-||.-|.++ +.++||||||.||++...+.+++.|+++. .+.|||+|.|+++.++
T Consensus 1687 GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~ 1766 (1809)
T PRK00635 1687 GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLK 1766 (1809)
T ss_pred CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 4442 47999999999999999999999876 78999999999999999999999999985 5799999999999999
Q ss_pred hcCEEEEEe------CCEEEEeccccccccCcchhhh
Q 014366 391 MAKRVFLLD------NGKLEELNRSTLLGSNHDSLVS 421 (426)
Q Consensus 391 ~~D~i~vl~------~G~i~e~g~~~~l~~~~~~l~~ 421 (426)
.||.|+-|. .|+|+..|+|+++.+++++...
T Consensus 1767 ~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~ 1803 (1809)
T PRK00635 1767 QADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLK 1803 (1809)
T ss_pred hCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHH
Confidence 999999995 4799999999999988766543
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-21 Score=179.06 Aligned_cols=152 Identities=21% Similarity=0.209 Sum_probs=111.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE-EEecCCCCCcccHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVA 280 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 280 (426)
..+.+|+++++++|++++|.||||+||||+++.+.- ..+..++| |||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 358999999999999999999999999999999981 12233455 6766543211 22
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeecc---C
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEp---t 355 (426)
+.+ +...++.+.. ...+|.|++|+..+++++ +.+|+++||||| |
T Consensus 74 ~~i-----------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 74 DCI-----------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred cee-----------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 221 1111221111 257999999999999999 999999999999 9
Q ss_pred CCCCHHHHHHHH-HHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 356 SALDSRSELLVR-QAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 356 s~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
+++|+....... +.+.+ ..+.++|++||..+....||++..+++|++...++
T Consensus 123 ~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999998775433 44443 23689999999766667899999999999976654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=194.14 Aligned_cols=103 Identities=28% Similarity=0.444 Sum_probs=93.4
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|+.. .+|....+|||||.|||-||.-|.++. -++||||||.||-.+..+++++.|.++. ++.|||+|-|+++.++
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 5553 579999999999999999999999987 8999999999999999999999999985 5799999999999999
Q ss_pred hcCEEEEE------eCCEEEEeccccccccCcch
Q 014366 391 MAKRVFLL------DNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 391 ~~D~i~vl------~~G~i~e~g~~~~l~~~~~~ 418 (426)
.||.|+-| +.|+|+.+|+|+++.+.+.+
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S 923 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKAS 923 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccc
Confidence 99999998 35899999999999876543
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=172.08 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=98.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 281 (426)
++++|++++. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+|. .|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 5778776664 79999999999999999999987543 22355554321 36677555664 59999
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
|+.++... ...+.. .+.+.++.+. ..+|+++|+||||+++|+.
T Consensus 79 ~l~~~~s~---~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 79 DLRDGISY---FYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred ccccccCh---HHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence 99775421 111111 2333343321 1799999999999999999
Q ss_pred HHHHHHH-HHHHHc-CCceEEEeccChHHHHh---cCEEEEE
Q 014366 362 SELLVRQ-AVDRLL-GHHTVLVIAHHLETVMM---AKRVFLL 398 (426)
Q Consensus 362 ~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~~---~D~i~vl 398 (426)
....+.. .++++. .+.|+|++||+++.+.. .++|-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 8877654 566553 46799999999988753 4455443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=172.41 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=63.0
Q ss_pred CCCCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH-Hhc--
Q 014366 325 GSSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV-MMA-- 392 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~-- 392 (426)
...+|+||||++++||+|+ .+|+++|+||||++||+...+.+.+.+.+.. .+++++|+.+.+ ..|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~ 257 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLR 257 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhcc
Confidence 3458999999999999984 7999999999999999999999999997753 355566555554 456
Q ss_pred -CEEEEEeCCEE
Q 014366 393 -KRVFLLDNGKL 403 (426)
Q Consensus 393 -D~i~vl~~G~i 403 (426)
++++.+++|++
T Consensus 258 ~~~i~~l~~g~i 269 (270)
T cd03242 258 RAQIFRVDAGTL 269 (270)
T ss_pred CccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-20 Score=171.80 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=104.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~-~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
..++++.+|++++|+||||||||||+++|++. +.+..|.... ..+..+++..|....| +..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~--~~~d~i-- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRI--GAEDSI-- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEe--cCcccc--
Confidence 44666779999999999999999999999943 3233332110 0012233332211111 111111
Q ss_pred CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHH
Q 014366 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~ 365 (426)
.+..+.+|++++| +..+.+++.+|+++|+||||+++|+.....
T Consensus 86 ------------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 ------------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ------------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 1122456666665 666678889999999999999999998877
Q ss_pred HHHH-HHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccc
Q 014366 366 VRQA-VDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 366 i~~~-l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+... ++.+. .+.++|++||+.+.+..||++..+++|++.+.++...+
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 7554 45443 36799999999999999999999999999888765433
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-19 Score=195.76 Aligned_cols=100 Identities=25% Similarity=0.354 Sum_probs=90.8
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHh
Q 014366 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 316 g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~ 391 (426)
|++.. +++...+|||||+||++|||||..+| +++||||||+|||+.+...+.+.|+++. +++|||+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 56544 67888999999999999999999986 8999999999999999999999999985 47899999999999999
Q ss_pred cCEEEEE------eCCEEEEeccccccccC
Q 014366 392 AKRVFLL------DNGKLEELNRSTLLGSN 415 (426)
Q Consensus 392 ~D~i~vl------~~G~i~e~g~~~~l~~~ 415 (426)
||+|++| ++|+|++.|+++++..+
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 89999999998877543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-19 Score=197.59 Aligned_cols=105 Identities=21% Similarity=0.355 Sum_probs=93.8
Q ss_pred HHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEecc
Q 014366 309 FVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAH 384 (426)
Q Consensus 309 ~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH 384 (426)
+++.+ |++.. ++....+|||||+|||+|||||..+| +++||||||++||+...+.+.+.|+++.+ +.|||+|+|
T Consensus 472 ~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEH 549 (943)
T ss_pred Hhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34444 67654 68889999999999999999999997 99999999999999999999999999864 789999999
Q ss_pred ChHHHHhcCEEEEE------eCCEEEEeccccccccC
Q 014366 385 HLETVMMAKRVFLL------DNGKLEELNRSTLLGSN 415 (426)
Q Consensus 385 ~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~ 415 (426)
+++.+..||+|++| ++|+++..|+++++.++
T Consensus 550 ~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 550 DEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 99999899999999 99999999998877554
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-19 Score=167.67 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=123.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeCCCCCHHHHhcce--EEEecCCCCCcccHHHHHcC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQNIRLDSLRRHV--GLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~i~~~~~~~~r~~i--~~v~Q~~~lf~~ti~eni~~ 285 (426)
+.+.+||+++|+||+|+|||||++.+.+......+ .+.+....-+..+..++.+.+ .+|-.... .+....+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~---~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD---EPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC---CCHHHHHHH
Confidence 57899999999999999999999999998876533 323221111123444444433 11111100 011111100
Q ss_pred CCCCCCCCHHHHHHHHHHhc-----hHHHHHhcCCCcccccCCCCCCCChHH--------HHHHHHHHHhcCCCCEEEee
Q 014366 286 RDLMTKIDMERVEHTARTAN-----ADEFVRTLPQGYNTHIGPRGSSLSGGQ--------RQRLAIARALYQNSSVLILD 352 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-----l~~~~~~lp~g~~t~~~~~g~~LSgGq--------kQRl~iARal~~~p~illlD 352 (426)
.. . -.+..+.. ...+ +-|.+.+++.++++..++.|..+|||+ +||+++||+++++++|.+|
T Consensus 88 ~~---~-~~~~a~~~-~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 AE---M-VLEKAKRL-VEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HH---H-HHHHHHHH-HHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 00 0 00001110 1111 234578889999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHH-HHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 353 EATSALDSRSELL-VRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 353 Epts~LD~~~~~~-i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
||+.+|+.++.. ++ +.+++ .++|.|++||++....++|.|.||+.|++.
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK 212 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc
Confidence 999999766543 43 44444 467999999999999999999999999973
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=163.49 Aligned_cols=181 Identities=23% Similarity=0.420 Sum_probs=136.5
Q ss_pred EEeCCCCCCcceeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 195 FKYADNMPLVLDQLNLHIRAGE-----TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 195 ~~y~~~~~~~l~~isl~i~~Ge-----~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
++|++- +..+.+..|.|+.|+ ++..+|+||.||||++++++|..+|++|. ++..+ .++|=|
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 456643 457889999999985 68899999999999999999999999873 22222 377888
Q ss_pred cCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 270 Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|...- +.+|||.-+.---+....+.+-+.+.++-..+++.+ +....+|||||.||+|+|-+|=+.+++
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~-----------dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENII-----------DQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHH-----------hHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 86553 678888866210001112233344455544444444 345689999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHH--cCCceEEEeccChHHHH-hcCEEEEEeC
Q 014366 349 LILDEATSALDSRSELLVRQAVDRL--LGHHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
++.|||.+-||.+.+..--+.+++. ..++|-.+|.|+.-... .|||++|.+.
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999999999988887888775 35689999999988776 5999999864
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=159.62 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~ 294 (426)
..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||....-..++.||- + .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-----k 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-----K 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-----H
Confidence 678999999999999999999999999999999999997654 45677778899996532233565542 0 0
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
.+ | ...++|+ .+|+++++|||++ .+.+...++.+.
T Consensus 183 ~~----------------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~ 217 (270)
T TIGR02858 183 AE----------------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH 217 (270)
T ss_pred HH----------------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh
Confidence 00 1 1344455 4999999999974 333444455555
Q ss_pred CCceEEEeccChHH--H------------HhcCEEEEEeCCEEEEeccccccc
Q 014366 375 GHHTVLVIAHHLET--V------------MMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 375 ~~~tvi~itH~~~~--~------------~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
.+.|+|++||+.+. + ..+||+++|++|+ ..|+++++.
T Consensus 218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 68899999997655 3 2479999999887 667666554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-19 Score=171.80 Aligned_cols=204 Identities=26% Similarity=0.422 Sum_probs=136.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHH---
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSL--- 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g~~i~~~~~~~~--- 261 (426)
+|.++|.+.+-.+ +..+.+.||.|-.|..+++|||||-|||||++-|+- +--|..=.+++..+.+..-+...+
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 5888888877654 358999999999999999999999999999999874 333443445555554432111100
Q ss_pred ----hcceEEEecCCCC----Ccc--cHHHHHc--------CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 262 ----RRHVGLVSQDITL----FSG--TVAENIG--------YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 262 ----r~~i~~v~Q~~~l----f~~--ti~eni~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
.++..++-.+..| -.| |+.|-+. .|. ...+.+.++. +..| |++..+.+
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA---~sAEarARRI---------LAGL--GFskEMQ~ 407 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA---DSAEARARRI---------LAGL--GFSKEMQE 407 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc---ccchhHHHHH---------Hhhc--CCChhHhc
Confidence 0111111111111 011 2222220 010 0011122222 2222 45544443
Q ss_pred C-CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 324 R-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 324 ~-g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+ ...+|||-|-||+|||||...|-+|.|||||+.||......+-..|.-+ .+|.++|||+..++. .|..|+.|++-
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhh
Confidence 3 4689999999999999999999999999999999999988888888777 469999999999997 69999999998
Q ss_pred EEEE-ecc
Q 014366 402 KLEE-LNR 408 (426)
Q Consensus 402 ~i~e-~g~ 408 (426)
++.. .|+
T Consensus 486 kLhyYrGN 493 (807)
T KOG0066|consen 486 KLHYYRGN 493 (807)
T ss_pred hhhhhcch
Confidence 8753 444
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=153.00 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=97.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE-EEecCCCCCcccHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVA 280 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 280 (426)
..+.+|+++++++|++++|+||||+||||++++++++. +..++| +||-.. ...++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 36899999999999999999999999999999998874 222333 222211 123666
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
|+|...-.. +..+.++.+++|+|++|+ ..+-+++.+|+++|||||++|+|+
T Consensus 73 d~I~~~~~~----------------------------~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 73 NRLLSRLSN----------------------------DDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hheeEecCC----------------------------ccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 776432110 001122346889999976 455667899999999999999999
Q ss_pred HHHHHHH-HHHHHHc-CCceEEEeccChHHHHh
Q 014366 361 RSELLVR-QAVDRLL-GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 361 ~~~~~i~-~~l~~~~-~~~tvi~itH~~~~~~~ 391 (426)
.....+. ..++.+. .+.++|++||+.+.+..
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 7655443 3444443 36899999999998864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=137.03 Aligned_cols=76 Identities=24% Similarity=0.138 Sum_probs=70.4
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
++|++++|++++||+++|+||||||||||++++. +|++.++|.|+..++..+.++.++++||+ +|++||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999988888888888899888 899999999
Q ss_pred HcCC
Q 014366 283 IGYR 286 (426)
Q Consensus 283 i~~~ 286 (426)
|.+.
T Consensus 75 i~~~ 78 (107)
T cd00820 75 IFLI 78 (107)
T ss_pred ceee
Confidence 9873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-17 Score=152.51 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=102.5
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 280 (426)
.+.+|++++.++ ++++|+|||||||||++|++++..-. ..|. .+ + ..+..++++.| +|+ .++.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~v---p--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------FV---P--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------ee---c--cccceecceee---EeccCCch
Confidence 588999999887 99999999999999999999875421 1121 11 1 11345676654 343 3666
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeecc---C
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEp---t 355 (426)
||+..+. |.=...+..+++++ +.+|+++||||| |
T Consensus 84 ~~ls~g~-----------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 84 DDLAGGR-----------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhhccCc-----------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 6664431 11111222333333 579999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 356 SALDSRSE-LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 356 s~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+++|.... ..+.+.+.+. .+.|+|++||+.+....+|++..+++|++...+..+++.
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 99998652 4445555432 267999999998777788888778889887666555443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-16 Score=146.26 Aligned_cols=73 Identities=29% Similarity=0.419 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHh----cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 327 SLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 327 ~LSgGqkQRl~iARal----~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.||||||-+++||--| ..++|++|||||.++||......+.+.|++..++.-+|++||+......||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998544 467899999999999999999999999999887788999999999999999887653
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=152.10 Aligned_cols=76 Identities=25% Similarity=0.419 Sum_probs=66.2
Q ss_pred CCCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-h--cC
Q 014366 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-M--AK 393 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~--~D 393 (426)
..+|.||+|++++|++++ .+|+|+|||||+++||+..++.+.+.+.++ +..++++||+.+.+. . .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 799999999999999999999999988754 357899999987664 3 46
Q ss_pred EEEEEeCCEE
Q 014366 394 RVFLLDNGKL 403 (426)
Q Consensus 394 ~i~vl~~G~i 403 (426)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=175.28 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=101.8
Q ss_pred CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH------HHHHHHHhcCCCC
Q 014366 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ------RLAIARALYQNSS 347 (426)
Q Consensus 274 lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ------Rl~iARal~~~p~ 347 (426)
.|+||++|||.+ .+ +.+++ ..+++.++..+|+..+|.| +|.++.++ .||||||| |++||||++.+|+
T Consensus 1153 ~~~~~~~~~i~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~ 1225 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS--DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCG 1225 (1311)
T ss_pred HcCccHHHHhhc-CC--CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCC
Confidence 489999999999 44 33333 5788889999999999999 99998775 89999999 9999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHc------CCceEEEeccChHHHH------hcCEEEEEe
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLL------GHHTVLVIAHHLETVM------MAKRVFLLD 399 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~~------~~D~i~vl~ 399 (426)
+|+|||||++||+.+...+.+.|.++. .+.|+|+|||++..+. .||+.|-+.
T Consensus 1226 il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1226 IIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999999999998887762 2579999999998875 257777554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=135.90 Aligned_cols=134 Identities=21% Similarity=0.255 Sum_probs=90.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc--ccH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS--GTV 279 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~--~ti 279 (426)
+-+|++++=..+.+++|+||||+|||||+|.+.. .. +..|...... ...++|..|...-+. .|+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 4455554322237999999999999999999983 33 5667655421 124677777543221 122
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
.+++ ..| .-+-||+++|++++.+|+++|||||++|+|
T Consensus 86 ~~~~-----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 86 SSGQ-----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred hhcc-----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 2221 011 234599999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHcC----CceEEEeccChHHHHhc
Q 014366 360 SRSELL-VRQAVDRLLG----HHTVLVIAHHLETVMMA 392 (426)
Q Consensus 360 ~~~~~~-i~~~l~~~~~----~~tvi~itH~~~~~~~~ 392 (426)
+..... ....++++.+ +.++|++||+.+.+...
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 975444 4456666532 24899999999988643
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-15 Score=161.33 Aligned_cols=152 Identities=21% Similarity=0.223 Sum_probs=99.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCC-CEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAG-ETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G-e~~~ivG~sGsGKSTLl~ll~g~-~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.++++..-+-... -.-.+|+++.++ ++++|+||||+|||||+|+++|. +.+..|.
T Consensus 295 ~i~l~~~rhPll~~~--~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEP--KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------- 353 (771)
T ss_pred CEEEccccCceecCC--ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------------
Confidence 477776654221110 122378888887 89999999999999999999987 3344331
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||..... ...+.+++.. ..+++ +.+. ++.+++|+|++|+..+++++ .
T Consensus 354 --~Vpa~~~~-~~~~~d~i~~-----~i~~~------------~si~-----------~~LStfS~~m~~~~~il~~~-~ 401 (771)
T TIGR01069 354 --PIPANEHS-EIPYFEEIFA-----DIGDE------------QSIE-----------QNLSTFSGHMKNISAILSKT-T 401 (771)
T ss_pred --CccCCccc-cccchhheee-----ecChH------------hHHh-----------hhhhHHHHHHHHHHHHHHhc-C
Confidence 33333210 0012222210 01110 0011 12368999999999999987 7
Q ss_pred CCCEEEeeccCCCCCHHHHHHHH-HHHHHHc-CCceEEEeccChHHHHh
Q 014366 345 NSSVLILDEATSALDSRSELLVR-QAVDRLL-GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~-~~l~~~~-~~~tvi~itH~~~~~~~ 391 (426)
+|+++|+|||++|+|+.....+. ..+..+. .+.++|++||..+....
T Consensus 402 ~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 402 ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 89999999999999999988884 4555554 46899999999876543
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-15 Score=136.70 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHH-HHHHHHc--CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+.+++|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++.+. .+.++|++||+.+..+.||+---+++
T Consensus 58 ~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~ 136 (185)
T smart00534 58 GLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRN 136 (185)
T ss_pred cccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceE
Confidence 346788888874433332 3499999999999999999777765 4455553 26799999999987777775333344
Q ss_pred CEE
Q 014366 401 GKL 403 (426)
Q Consensus 401 G~i 403 (426)
++.
T Consensus 137 ~~~ 139 (185)
T smart00534 137 LHM 139 (185)
T ss_pred EEE
Confidence 433
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-15 Score=158.50 Aligned_cols=91 Identities=30% Similarity=0.474 Sum_probs=80.2
Q ss_pred hcCCCcccccCCCC------CCCChHHHHHHHHHHHhc----------CCCCEEEeeccC-CCCCHHHHHHHHHHHHHHc
Q 014366 312 TLPQGYNTHIGPRG------SSLSGGQRQRLAIARALY----------QNSSVLILDEAT-SALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 312 ~lp~g~~t~~~~~g------~~LSgGqkQRl~iARal~----------~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~ 374 (426)
.+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++||+.+...+.+.|.++
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~- 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL- 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-
Confidence 45777777777666 789999999999999987 599999999998 789999999999999988
Q ss_pred CCceEEEeccChHHHHhcCEEEEEeC-CEE
Q 014366 375 GHHTVLVIAHHLETVMMAKRVFLLDN-GKL 403 (426)
Q Consensus 375 ~~~tvi~itH~~~~~~~~D~i~vl~~-G~i 403 (426)
++.|+|+|||++.....||++++|++ |+.
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 67899999999888888999999986 544
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=139.64 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=117.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC---CC-----CCHHHHhcceEEEecCCCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QN-----IRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i---~~-----~~~~~~r~~i~~v~Q~~~l 274 (426)
.+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|+.- .+ ++...+++.+.++.+...
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~- 224 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ- 224 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC-
Confidence 589999 99999999999999999999999999999999999999965543 32 233456777888865321
Q ss_pred CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC-hHHHHH-HHHHHHhcCCCCEEEee
Q 014366 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS-GGQRQR-LAIARALYQNSSVLILD 352 (426)
Q Consensus 275 f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS-gGqkQR-l~iARal~~~p~illlD 352 (426)
+. ..+...+.-.+.+.|+.... |.|-.+=- .+++ --|.|| +++ .+.+|+
T Consensus 225 ---~~--------------~~r~~~~~~a~~iAEyfr~~--g~~Vll~~--Dsltr~A~A~rEisl---~~ge~P----- 275 (438)
T PRK07721 225 ---PA--------------LMRIKGAYTATAIAEYFRDQ--GLNVMLMM--DSVTRVAMAQREIGL---AVGEPP----- 275 (438)
T ss_pred ---CH--------------HHHHHHHHHHHHHHHHHHHC--CCcEEEEE--eChHHHHHHHHHHHH---hcCCCC-----
Confidence 00 11111111112223333221 33321110 0111 011111 111 134555
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc---CCc-----eEEEeccChHHHHhcCEEEEEeCCEEEEecccc
Q 014366 353 EATSALDSRSELLVRQAVDRLL---GHH-----TVLVIAHHLETVMMAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~ 410 (426)
.|+|+|+.....+.+.++++. ++. ||++.+|+++. ..||++.++.+|+|+..++..
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 689999999999999998875 354 99999999985 789999999999999887653
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.5e-15 Score=143.46 Aligned_cols=170 Identities=28% Similarity=0.378 Sum_probs=118.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhc--------------ceEEEecCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRR--------------HVGLVSQDITL 274 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~~~r~--------------~i~~v~Q~~~l 274 (426)
++|+..++||.||-||||-++.++|-.+|.-|.-. ++-+..++ .-.++.. +.-||.|-|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 58999999999999999999999999999877632 12111110 1111111 11122222222
Q ss_pred CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 275 f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
..+++.+++.--. +.+...++++..++...++ +...+||||+-||.+||.+.+.+++++++|||
T Consensus 177 ~k~~v~~~l~~~~-----~r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 177 VKGTVGSLLDRKD-----ERDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHHh-----hcccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 3345555542111 1122334444444444433 35679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEe
Q 014366 355 TSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
.|.||...+.+-...|+.+. .++-||+|-||++.+. ..|-|.++-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99999999999888998875 4688999999999997 588888875
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-14 Score=148.71 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCChHHHHHHHHHHHhcCC----CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 326 SSLSGGQRQRLAIARALYQN----SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~----p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
..|||||+||++|||+++.. |+++||||||+|||+.+...+.+.|+++.+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999885 69999999999999999999999999987789999999999988899999999987
Q ss_pred E
Q 014366 402 K 402 (426)
Q Consensus 402 ~ 402 (426)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=121.55 Aligned_cols=140 Identities=29% Similarity=0.403 Sum_probs=121.0
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||.++++.+++.|+..++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|++..++.
T Consensus 134 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 213 (275)
T PF00664_consen 134 ILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKY 213 (275)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPI 142 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l-v~~g~l~~g~l~~~~~~~~~~~~p~ 142 (426)
.+...+............... ....++++++|+++ +..|.+++|.++++..+...+.+|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 214 RKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 777766666555544444433 33356677789999 9999999999999999999998885
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-14 Score=130.19 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccC-----CCCCHHHHHHHHHHHHHHc
Q 014366 331 GQRQRLAIARALYQNSSVLILDEAT-----SALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpt-----s~LD~~~~~~i~~~l~~~~ 374 (426)
-|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998874
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=143.87 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=71.0
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~----~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
.+||||+||++|||+++. +|+++|||||++|||..+...+.+.|+++.++.+||+|||++..+..||+.++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 579999999999999997 5899999999999999999999999999877789999999999888999999998754
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=9e-13 Score=143.84 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH-HHHHc-CCceEEEeccChHHHHh-cCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVLVIAHHLETVMM-AKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~-~~~tvi~itH~~~~~~~-~D~i~vl~~G 401 (426)
.+++|+|++|++.|++++ .+|+++|+|||++|+|+.....+... +..+. .+.++|++||+.+.... +|+..++ ++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NA 465 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EE
Confidence 368999999999999999 89999999999999999988877654 54443 46799999999888764 5554443 45
Q ss_pred EEE
Q 014366 402 KLE 404 (426)
Q Consensus 402 ~i~ 404 (426)
.+.
T Consensus 466 ~~~ 468 (782)
T PRK00409 466 SVE 468 (782)
T ss_pred EEE
Confidence 543
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-13 Score=131.63 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEE
Q 014366 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~ 396 (426)
.-+|+||++++++|+.|+ .+|++++||||+|.||......+.+.|.... .++|..|+ .-..||+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 457999999999999998 8999999999999999999999998886532 34444443 334789999
Q ss_pred EEeCCEEEEec
Q 014366 397 LLDNGKLEELN 407 (426)
Q Consensus 397 vl~~G~i~e~g 407 (426)
.+++|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999876443
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-13 Score=124.68 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=86.3
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti 279 (426)
+.+.+|+++++++|++++|+||||+||||+++++++ .+.++.|...... . -.+++..| +|. ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecC
Confidence 358999999999999999999999999999999999 6778888765432 1 12333332 111 112
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
.|++.-+.. .+ ..|-+|++-.-.-+.+|+++|||||.+|.|
T Consensus 84 ~d~~~~~~S--------------------------------------tF-~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 84 SDSIQHGMS--------------------------------------TF-MVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred ccccccccc--------------------------------------hH-HHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 222211100 00 011122222222346899999999988887
Q ss_pred HHHHHHH-HHHHHHHc--CCceEEEeccChHHHHh
Q 014366 360 SRSELLV-RQAVDRLL--GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 360 ~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~ 391 (426)
+.....+ ...++.+. .+.++|++||+.+....
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 6655443 33444443 36799999999987654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-13 Score=118.76 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeec--cCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDE--ATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDE--pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
....+||+++-+..+++..+.+|+++++|| |+..+|....+.+.+.+ ..++++|+++|+-.....+|+|..+.+|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 345699999999999999999999999999 55566655554454444 2368999999996555689999999999
Q ss_pred EEEEe
Q 014366 402 KLEEL 406 (426)
Q Consensus 402 ~i~e~ 406 (426)
++.+.
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 99876
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-12 Score=134.82 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=92.1
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM 391 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~--p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 391 (426)
|++. -+++...+|||||.||+-||.-+-.+ -=+++||||+.||-+..-.++.+.|++++. |+|+|+|.||.+++..
T Consensus 469 GL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~ 548 (935)
T COG0178 469 GLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA 548 (935)
T ss_pred CcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh
Confidence 4543 24677889999999999999999776 358899999999999999999999999874 7999999999999999
Q ss_pred cCEEEEE------eCCEEEEeccccccccCcchhh
Q 014366 392 AKRVFLL------DNGKLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 392 ~D~i~vl------~~G~i~e~g~~~~l~~~~~~l~ 420 (426)
||+|+-| +.|+|+.+|+|++++++++++.
T Consensus 549 AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlT 583 (935)
T COG0178 549 ADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLT 583 (935)
T ss_pred cCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchh
Confidence 9999988 4689999999999998887654
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=144.65 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCCCCCChHHHHHHHHHHHhcC----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-
Q 014366 323 PRGSSLSGGQRQRLAIARALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM- 390 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~----------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~- 390 (426)
....+|||||++|++||+||+. +|++||+||||++||+.+...+.+.|.++. .+++|++|||+++...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 4578999999999999999985 799999999999999999999999999885 4689999999999886
Q ss_pred hcCEEEEEeCC
Q 014366 391 MAKRVFLLDNG 401 (426)
Q Consensus 391 ~~D~i~vl~~G 401 (426)
.||+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 79999999765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=116.31 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=91.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHH-HHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL-AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTL-l~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
+.++++.+.+++ .+++|+++.|.|++||||||| ++++.++.++....+++.... ++.++
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~----- 67 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEF----- 67 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHH-----
Confidence 556666666643 278999999999999999999 699998876544444443211 11111
Q ss_pred EEecCCCCCcccHHHHH-cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--
Q 014366 267 LVSQDITLFSGTVAENI-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-- 343 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~-- 343 (426)
.++. .++. +.++ +... ..+. .+.-. ..+|+++.++-.+++.+-
T Consensus 68 -------------~~~~~~~g~-----~~~~------------~~~~--~~l~-~~~~~-~~~~~~~~~~~~l~~il~~~ 113 (230)
T PRK08533 68 -------------IKQMMSLGY-----DINK------------KLIS--GKLL-YIPVY-PLLSGNSEKRKFLKKLMNTR 113 (230)
T ss_pred -------------HHHHHHhCC-----chHH------------Hhhc--CcEE-EEEec-ccccChHHHHHHHHHHHHHH
Confidence 1111 1110 1110 0000 0000 00000 135666555545444333
Q ss_pred --CCCCEEEeeccCCCC----CHHHHHHHHHHHHHHcC-CceEEEeccChHHH--------H-hcCEEEEEe
Q 014366 344 --QNSSVLILDEATSAL----DSRSELLVRQAVDRLLG-HHTVLVIAHHLETV--------M-MAKRVFLLD 399 (426)
Q Consensus 344 --~~p~illlDEpts~L----D~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~--------~-~~D~i~vl~ 399 (426)
.+|+++++||||+.+ |+...+.+.+.++++.+ +.|+ ++||+.... . .||-|+.|+
T Consensus 114 ~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 114 RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 77777888888887754 5555 556664432 2 368888887
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-12 Score=139.21 Aligned_cols=76 Identities=29% Similarity=0.433 Sum_probs=67.5
Q ss_pred CCCCCChHHHHHHHH------HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH-cC--C-ceEEEeccChHHHHhcC
Q 014366 324 RGSSLSGGQRQRLAI------ARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-LG--H-HTVLVIAHHLETVMMAK 393 (426)
Q Consensus 324 ~g~~LSgGqkQRl~i------ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~--~-~tvi~itH~~~~~~~~D 393 (426)
++..|||||+||++| ||+++.+|++++|||||++||+.....+.+.+... .. + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 577899999999975 59999999999999999999999999999988753 22 2 48999999999888999
Q ss_pred EEEEEe
Q 014366 394 RVFLLD 399 (426)
Q Consensus 394 ~i~vl~ 399 (426)
+++.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-12 Score=124.67 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=98.3
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD 287 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~ 287 (426)
+++.+++|+.++|+||+|||||||+++|+++++|+.|.+.+++ ..++.... +..+.++.+... + +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~-------~----~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGG-------Q----G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCC-------C----C-
Confidence 4577889999999999999999999999999999999888753 23322211 112222221100 0 0
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHH
Q 014366 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367 (426)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~ 367 (426)
. ...+ ..-.++++|-.+|+++++|||.+ .++.
T Consensus 202 -~------------------------------------~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~ 233 (308)
T TIGR02788 202 -L------------------------------------AKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAF 233 (308)
T ss_pred -c------------------------------------CccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHH
Confidence 0 0011 11145567788999999999996 2345
Q ss_pred HHHHHHcCC-ceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 368 QAVDRLLGH-HTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 368 ~~l~~~~~~-~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+.++....+ .+++.++|..+.....||+..|..|++...|.+.+..
T Consensus 234 ~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 556655444 4679999999977789999999999988888776554
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.2e-12 Score=139.21 Aligned_cols=77 Identities=32% Similarity=0.367 Sum_probs=68.1
Q ss_pred CCCCCChHHHH------HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEE
Q 014366 324 RGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 324 ~g~~LSgGqkQ------Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~ 396 (426)
++..|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+.+....||+++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 45689999999 56667789999999999999999999999999999988643 579999999998878899999
Q ss_pred EEeC
Q 014366 397 LLDN 400 (426)
Q Consensus 397 vl~~ 400 (426)
+|+.
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9983
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-11 Score=109.20 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=63.3
Q ss_pred cccCCCCCCCChHHHH------HHHHHHHhcCCCCEEEeeccCCCCC---HHHHHHHHHHHHHHc-CCceEEEeccChHH
Q 014366 319 THIGPRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALD---SRSELLVRQAVDRLL-GHHTVLVIAHHLET 388 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQ------Rl~iARal~~~p~illlDEpts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~~~~ 388 (426)
...+.....+|+|++| +...+.+...+|+++++|||++.+| ......+.+.++.++ .+.|+|+++|....
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3445566789999998 4444555667999999999999999 777777888877764 46899999998764
Q ss_pred ---------HH-hcCEEEEEe
Q 014366 389 ---------VM-MAKRVFLLD 399 (426)
Q Consensus 389 ---------~~-~~D~i~vl~ 399 (426)
+. .||.|+.|+
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CCcccCcCceeEeeeEEEEEE
Confidence 43 599999997
|
A related protein is found in archaea. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=131.55 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=58.5
Q ss_pred hcCCCCEEEeeccCCCC-CHHHHHHHHHHHHHHc-CCceEEEeccChHHH----------HhcCEEEEEeCCEEEEeccc
Q 014366 342 LYQNSSVLILDEATSAL-DSRSELLVRQAVDRLL-GHHTVLVIAHHLETV----------MMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 342 l~~~p~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~----------~~~D~i~vl~~G~i~e~g~~ 409 (426)
+..+|+++++|||+.+| |+...+.+.+.+++.+ .+.+++++||+++.+ ..||++++|.+|++.+.|..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 35799999999999999 6899999999998875 467999999999876 36999999999998766543
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=140.61 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=69.5
Q ss_pred CCCCCCChHHHHHHHHHHHh----cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 323 PRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal----~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
..+..||||||||++|||++ +++|+++||||||++||+.+...+.+.|..+.++.++|+|||++..+..||+++.+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 45678999999999999998 47789999999999999999999999999887668999999999988899999765
Q ss_pred e
Q 014366 399 D 399 (426)
Q Consensus 399 ~ 399 (426)
.
T Consensus 1165 ~ 1165 (1179)
T TIGR02168 1165 T 1165 (1179)
T ss_pred e
Confidence 3
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-12 Score=127.76 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=56.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcceEEEecCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~ 272 (426)
.+|++||+++++||+++|+||||||||||++ .|+.+|++| +|.++|+++...+..++.. .-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999 788888888 7999999998766544322 11888864
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-11 Score=110.40 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=84.6
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti 279 (426)
..+-+|++|+.++|++++|.||||+||||+++.+....-.. -|. .+. .+ +..++++ ..+| ....
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vp---a~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVP---AK--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccC---cc--ccEeccc---cEEEEecCc
Confidence 35889999999999999999999999999999987653211 121 000 00 0112211 1122 1133
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
.|++..+.. . +. .|-+|++-.-....+|+++|+|||++|+|
T Consensus 83 ~d~~~~~~S--t------------------------------------F~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 83 RDDIMKGES--T------------------------------------FM-VELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred ccccccCcc--h------------------------------------HH-HHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 344322210 0 00 11122222222236799999999999999
Q ss_pred HHHHHHHHHH-HHHHcC--CceEEEeccChHHHHh
Q 014366 360 SRSELLVRQA-VDRLLG--HHTVLVIAHHLETVMM 391 (426)
Q Consensus 360 ~~~~~~i~~~-l~~~~~--~~tvi~itH~~~~~~~ 391 (426)
+.....+... ++.+.+ +.++|++||+.+....
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 9988777777 555543 6899999999988753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=118.59 Aligned_cols=168 Identities=20% Similarity=0.178 Sum_probs=117.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++-+.++..|..+ ..+++++ |++.+|++++|+|+||+|||||+++|+|..+|+.|.|.+.|+.-.
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 46667777777654 3578875 999999999999999999999999999999999988877664321
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc---
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--- 343 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--- 343 (426)
+++|.+.. .+...++. .+.+=....+-|.|+|+|++.+.+.+
T Consensus 196 -----------ev~e~~~~--------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 196 -----------EVKDFIRK--------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------cHHHHHHH--------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 23333210 00000000 00011123678999999999999887
Q ss_pred ----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 344 ----QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 344 ----~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
.++-++++|+||...|+. +++...+.+.. .+.+..+.||-...++.|-+ .++|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 789999999999999997 55555555554 46788888885555555544 47888865543
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-11 Score=112.79 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=53.3
Q ss_pred CCCChHHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHH
Q 014366 326 SSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETV 389 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~ 389 (426)
..+|.|+||.+.++-++...+ .++++|||-++|+|...+.+.+.|.+..+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 456999999999998888776 89999999999999999999999988765 67899999998764
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.7e-12 Score=133.68 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHH-----HHHHHHHHHH
Q 014366 11 VLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARF-----RRLAHSDLCE 85 (426)
Q Consensus 11 ~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~ 85 (426)
.++++++++++++++......+..++.........+...+.+.|.+.++.+||..+.+......| .....+..+.
T Consensus 5 ~L~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~ 84 (644)
T PRK10733 5 LILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTK 84 (644)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHc
Confidence 34455555555544443333333344444445555677888899999999999998877655445 2222222222
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 86 LLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGC---SLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g---~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
..+..........+.. +.....++++++|++++..+.++.| .+++|..+...+..| ..+...+.++.....+.+|
T Consensus 85 ~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~ 163 (644)
T PRK10733 85 NVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEE 163 (644)
T ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHH
Confidence 2222111111111111 2223356667789999999999888 778887777777777 6667778888877888888
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+.++.+...+. . . | +.+...+++| +.|+||+|+||||+.+.+++...
T Consensus 164 l~~i~~~~~~~---~---~----------------~--------~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 164 VAELVEYLREP---S---R----------------F--------QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred HHHHHHHhhCH---H---H----------------H--------HhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 88876542210 0 0 0 0111245566 99999999999999999988553
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.9e-11 Score=134.42 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=69.4
Q ss_pred CCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 325 GSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
...||||||++++||++++ .+||+++||||+++||+.....+.+.|.++..+.++|+|||+...+..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 4589999999999999997 478999999999999999999999999988767789999999998889999987753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=98.99 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=78.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~ 296 (426)
++.|.||||+||||+++.+++...+..|.+.+.+.+... ...+ ++...... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~~~--~----- 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGESL--K----- 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhhhh--c-----
Confidence 378999999999999999999887766666554432111 1111 11000000 0
Q ss_pred HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC----------CHHHHHHH
Q 014366 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL----------DSRSELLV 366 (426)
Q Consensus 297 ~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L----------D~~~~~~i 366 (426)
. .+.. ...+.......+.++.++++.+++...+|+++++||+++-+ |....+.+
T Consensus 53 --------~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l 116 (165)
T cd01120 53 --------G-------ALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEEL 116 (165)
T ss_pred --------c-------cccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH
Confidence 0 0000 00111112233455666888999999999999999999544 44445566
Q ss_pred HHHHHHHcC-CceEEEeccChHHH
Q 014366 367 RQAVDRLLG-HHTVLVIAHHLETV 389 (426)
Q Consensus 367 ~~~l~~~~~-~~tvi~itH~~~~~ 389 (426)
.+.....++ +.|+|+++|.....
T Consensus 117 ~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 117 RELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHhcCCceEEEEEecCCcc
Confidence 666555543 68999999987543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-10 Score=101.09 Aligned_cols=81 Identities=16% Similarity=0.291 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh-cCEEEEEeCCEE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM-AKRVFLLDNGKL 403 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~D~i~vl~~G~i 403 (426)
...|.||-=---+.|.+ ++.-++|||||-|+|.+.-+-.++..|+++.+ |.-+||+||.+-.+.. --+|+-++.+-+
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 46699997776677776 45679999999999999999999999999864 6789999999988764 568888988876
Q ss_pred EEec
Q 014366 404 EELN 407 (426)
Q Consensus 404 ~e~g 407 (426)
.+.+
T Consensus 207 ~~~~ 210 (233)
T COG3910 207 EERD 210 (233)
T ss_pred cccc
Confidence 5543
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=130.85 Aligned_cols=78 Identities=27% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcC--------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hc
Q 014366 323 PRGSSLSGGQRQRLAIARALYQ--------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MA 392 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~--------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~ 392 (426)
.++.+|||||+|+++|||||+. +|++|++||||++||+.+...+++.|..+. .++||++|||..+... ..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 5678999999999999999995 899999999999999999999999999885 5789999999777765 45
Q ss_pred CEEEEEeC
Q 014366 393 KRVFLLDN 400 (426)
Q Consensus 393 D~i~vl~~ 400 (426)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67766654
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-10 Score=103.94 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=75.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME 295 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~ 295 (426)
.+.|+||+||||||+++.|++.+++. .|.|...+.++. +.. ....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc-----------------------
Confidence 78999999999999999999888744 567665443321 100 00111111110
Q ss_pred HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC
Q 014366 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (426)
Q Consensus 296 ~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 375 (426)
+|.....++. ++++++..+|+++++|||. |.++...+.+ ....
T Consensus 56 -------------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~ 98 (198)
T cd01131 56 -------------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAET 98 (198)
T ss_pred -------------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHc
Confidence 0000011111 4789999999999999996 6665443333 3345
Q ss_pred CceEEEeccChHHHHhcCEEEEEe
Q 014366 376 HHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 376 ~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
+.+++.++|..+.....||++.|-
T Consensus 99 G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 99 GHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred CCEEEEEecCCcHHHHHhHHHhhc
Confidence 788999999998777788887663
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-10 Score=125.76 Aligned_cols=77 Identities=32% Similarity=0.392 Sum_probs=67.6
Q ss_pred CCCCChHHHH------HHHHHHHhcCC-----C-CEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEeccChHHHH
Q 014366 325 GSSLSGGQRQ------RLAIARALYQN-----S-SVLILDEATSALDSRSELLVRQAVDRLLG-H-HTVLVIAHHLETVM 390 (426)
Q Consensus 325 g~~LSgGqkQ------Rl~iARal~~~-----p-~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~ 390 (426)
+..||||||| |+++|+++..+ | +++||||||++||+.....+.+.|..+.. + .+||+|||+...+.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4689999999 99999999864 2 67999999999999999999999988753 3 47999999999998
Q ss_pred hcCEEEEEeCC
Q 014366 391 MAKRVFLLDNG 401 (426)
Q Consensus 391 ~~D~i~vl~~G 401 (426)
.||+++.|...
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999754
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=86.81 Aligned_cols=117 Identities=38% Similarity=0.498 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~ 292 (426)
++..+.|+||+||||||+++.++..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467999999999999999999999887654 4455544332221111100
Q ss_pred CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHH----
Q 014366 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ---- 368 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~---- 368 (426)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~ 105 (148)
T smart00382 51 -------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEEL 105 (148)
T ss_pred -------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhh
Confidence 001112335678888889999999888899999999999999988776554
Q ss_pred ---HHHHHcCCceEEEeccC
Q 014366 369 ---AVDRLLGHHTVLVIAHH 385 (426)
Q Consensus 369 ---~l~~~~~~~tvi~itH~ 385 (426)
..........+|+++|.
T Consensus 106 ~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 106 RLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHhcCCCEEEEEeCC
Confidence 12222345688888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-09 Score=98.08 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHhcC--CCCEEEeeccCCCCC---HHHHHHHHHHHHHHc-CCceEEEeccChHH-------HH-hc
Q 014366 327 SLSGGQRQRLAIARALYQ--NSSVLILDEATSALD---SRSELLVRQAVDRLL-GHHTVLVIAHHLET-------VM-MA 392 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~--~p~illlDEpts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-------~~-~~ 392 (426)
..|.++++.+..++..+. +|+++++||||+.+| ......+.+.++.+. .+.|+++++|.... +. .+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 456788999999999997 899999999996544 444445545555543 46799999997643 33 47
Q ss_pred CEEEEEeC
Q 014366 393 KRVFLLDN 400 (426)
Q Consensus 393 D~i~vl~~ 400 (426)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 88888873
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-09 Score=109.87 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=70.9
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc---CEeCCCCCHHH-
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD---DHDVQNIRLDS- 260 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~---g~~i~~~~~~~- 260 (426)
.+.++.++++..|..+ ..+++.++ +|.+||+++|+||||||||||+++|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 3568999999999765 46899886 999999999999999999999999999999999999885 46655443322
Q ss_pred ---HhcceEEEecCC
Q 014366 261 ---LRRHVGLVSQDI 272 (426)
Q Consensus 261 ---~r~~i~~v~Q~~ 272 (426)
+++.+++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 235799999965
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-09 Score=105.53 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcce-----------eeeEEEeCCCEEEEECC
Q 014366 155 GEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLD-----------QLNLHIRAGETVALIGP 223 (426)
Q Consensus 155 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~-----------~isl~i~~Ge~~~ivG~ 223 (426)
+..+.+|++++++.++..... +....+.++|+||+|.||+. +.+|+ |+++.|.+|+.++|+||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~~-----~e~~~~ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGDD-----PEKAKNRVLFENLTPLYPNE-RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred ccccHhHHHHHhCCCccCCCC-----ccccCCCeEEEEeeecCCCc-cceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 446789999999876542211 12234679999999999875 46897 99999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCC
Q 014366 224 SGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 224 sGsGKSTLl~ll~g~~~p 241 (426)
+|||||||++.|...+..
T Consensus 177 ~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCChhHHHHHHHHhhcc
Confidence 999999999999998754
|
Members of this family differ in the specificity of RNA binding. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-09 Score=96.32 Aligned_cols=66 Identities=35% Similarity=0.392 Sum_probs=53.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHH
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (426)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++..++++. +.++.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 58888877777777664 3466666777888
Q ss_pred HHH
Q 014366 281 ENI 283 (426)
Q Consensus 281 eni 283 (426)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 773
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-07 Score=103.96 Aligned_cols=53 Identities=30% Similarity=0.327 Sum_probs=47.3
Q ss_pred HHHHhcCCCCEEEeeccCCCC-CHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 338 IARALYQNSSVLILDEATSAL-DSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 338 iARal~~~p~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|+|++..+|+++++|||+.+| |+...+.+.+.++..+ .+.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 688999999999999999999 7899999999998875 4679999999998774
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-10 Score=115.99 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=99.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--hcCCCCCccEEEEcCEeCCCCCHHHHh---cceEEEecCCCCCcccHHHHHcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSGCILVDDHDVQNIRLDSLR---RHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll--~g~~~p~~G~I~~~g~~i~~~~~~~~r---~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
-+++|..+.|.|++|||||||..-. .|..++.+.-+++... -++++++ +.+||-.++..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4889999999999999999999865 4555545566776553 2344443 345655543210 011111
Q ss_pred CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH--HHhcCCCCEEEeeccCCCCCHHHH
Q 014366 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA--RALYQNSSVLILDEATSALDSRSE 363 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA--Ral~~~p~illlDEpts~LD~~~~ 363 (426)
-... +........+..++.++++.++ ..+|+|++|||.|+ .++..+|+.. ...+
T Consensus 88 ~~~~---~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r 143 (484)
T TIGR02655 88 LDAS---PDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVR 143 (484)
T ss_pred EecC---chhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHH
Confidence 1000 0011112234445566665544 58899999999999 6666665543 4667
Q ss_pred HHHHHHHHHHc-CCceEEEeccChHH--------H-H-hcCEEEEEe
Q 014366 364 LLVRQAVDRLL-GHHTVLVIAHHLET--------V-M-MAKRVFLLD 399 (426)
Q Consensus 364 ~~i~~~l~~~~-~~~tvi~itH~~~~--------~-~-~~D~i~vl~ 399 (426)
+.+.+.++.++ .++|+|+++|+.+. + . .||.|+.|+
T Consensus 144 ~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 144 REIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77888887765 47899999998753 2 3 489999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=5e-09 Score=106.56 Aligned_cols=81 Identities=25% Similarity=0.213 Sum_probs=63.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc---EEEEcCEeCCCCCHHHH------hcceEEEecCCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG---CILVDDHDVQNIRLDSL------RRHVGLVSQDIT 273 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G---~I~~~g~~i~~~~~~~~------r~~i~~v~Q~~~ 273 (426)
.+++++ |++.+|++++|+|+||||||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 589999 99999999999999999999999999999998864 33344444444332222 456999999988
Q ss_pred CCc-ccHHHHHc
Q 014366 274 LFS-GTVAENIG 284 (426)
Q Consensus 274 lf~-~ti~eni~ 284 (426)
.+. .++.++..
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 774 47888764
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-08 Score=102.69 Aligned_cols=63 Identities=30% Similarity=0.395 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHHhcC---------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH
Q 014366 326 SSLSGGQRQRLAIARALYQ---------NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM 390 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~---------~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~ 390 (426)
..+|.||+++++||.+|+. +|+|+|||||+|+||+..++.+.+.|.+. +.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999754 568999999987653
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-08 Score=103.61 Aligned_cols=60 Identities=25% Similarity=0.317 Sum_probs=48.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
+.++.+++|++++++||||+||||++..|++.+.+..|. ++|+++++|+ |..+..|++.+
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHH
Confidence 344456678999999999999999999999988766663 2578999887 66678888864
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-08 Score=93.00 Aligned_cols=77 Identities=25% Similarity=0.275 Sum_probs=55.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCC--CCc-ccHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFS-GTVA 280 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~ 280 (426)
..+=+.+.+++|+.++|+|||||||||+++.|+|+++|+.|.|.+.+..-...+ .+..+++++|... .++ .|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 444556779999999999999999999999999999999999999764322221 2344666665543 222 3555
Q ss_pred HHH
Q 014366 281 ENI 283 (426)
Q Consensus 281 eni 283 (426)
+.+
T Consensus 91 ~~l 93 (186)
T cd01130 91 DLL 93 (186)
T ss_pred HHH
Confidence 554
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-07 Score=95.27 Aligned_cols=184 Identities=18% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.+...|..-+++. ++... +......+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l~ 218 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGLK 218 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccccc
Confidence 3589999 999999999999999999999999999999999988777665443321 11100 00000011
Q ss_pred HH-cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC-hHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 282 NI-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS-GGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 282 ni-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS-gGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
+. .+.....+...++...+.-.+.+.++... .|.|-.+=- .+|+ --|.|| .++- .+.+|+ .+.|.|
T Consensus 219 ~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~--DslTr~A~A~R-Eisl-~~ge~P------~~~Gyp 286 (440)
T TIGR01026 219 RSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLM--DSVTRFAMAQR-EIGL-AAGEPP------ATKGYT 286 (440)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEE--eChHHHHHHHH-HHHH-hcCCCC------cccccC
Confidence 11 01000001112333322233334444433 254432210 1222 122222 1111 123333 467999
Q ss_pred HHHHHHHHHHHHHHcC-Cc-------eEEEeccChHHHHhcCEEEEEeCCEEEEecccc
Q 014366 360 SRSELLVRQAVDRLLG-HH-------TVLVIAHHLETVMMAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 360 ~~~~~~i~~~l~~~~~-~~-------tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~ 410 (426)
+.....+.+.+.+... ++ ||++-+|++. -..||++.-+.||+|+-.++..
T Consensus 287 p~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la 344 (440)
T TIGR01026 287 PSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALA 344 (440)
T ss_pred hhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchh
Confidence 9999999999988743 45 8888999983 2368999999999998766543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-08 Score=95.99 Aligned_cols=121 Identities=22% Similarity=0.310 Sum_probs=75.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~ 290 (426)
.+++..+.|.||+||||||+++.+.+.++ +.+|.|..-+.++.-. .......+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 35788999999999999999999998766 4467776544332100 00000111110
Q ss_pred CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHH
Q 014366 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370 (426)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l 370 (426)
.+|....+ -.-++++||-.+|+++++||+. |+++.....+.
T Consensus 176 -----------------------------evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a- 216 (343)
T TIGR01420 176 -----------------------------EVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA- 216 (343)
T ss_pred -----------------------------ccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH-
Confidence 00000001 1124678888999999999997 88877654443
Q ss_pred HHHcCCceEEEeccChHHHHhcCEEE
Q 014366 371 DRLLGHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 371 ~~~~~~~tvi~itH~~~~~~~~D~i~ 396 (426)
...|.+++.+.|..+.....+|++
T Consensus 217 --a~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 217 --AETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred --HHcCCcEEEEEcCCCHHHHHHHHH
Confidence 345788999999976655445443
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-08 Score=91.36 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=36.1
Q ss_pred hcCCCCEEEeeccCCC------CCHHHHHHHHHHHHHHc--CCceEEEeccCh
Q 014366 342 LYQNSSVLILDEATSA------LDSRSELLVRQAVDRLL--GHHTVLVIAHHL 386 (426)
Q Consensus 342 l~~~p~illlDEpts~------LD~~~~~~i~~~l~~~~--~~~tvi~itH~~ 386 (426)
...+|+++++| |+++ +|+.....+.+.|.++. .+.|+++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7754 69988888998888764 368999999976
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-07 Score=91.48 Aligned_cols=172 Identities=25% Similarity=0.345 Sum_probs=114.8
Q ss_pred EEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecC
Q 014366 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD 271 (426)
Q Consensus 193 v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~ 271 (426)
|++..|++. .+.+ +-|++| ++.|+|.+=-||||||+.|. |.|+---| ||.+ ||--+
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE--------------~VVT~ 283 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE--------------FVVTD 283 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce--------------EEEEC
Confidence 667666542 4454 478999 99999999999999999986 77764333 2321 11111
Q ss_pred CCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEe
Q 014366 272 ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351 (426)
Q Consensus 272 ~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illl 351 (426)
+... .|+ .. + -+....+++..|++.||.|.||. .-.-.+=||-.-|=-.|..|+=..+++||+
T Consensus 284 ~~av--kir------AE----D----GR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLi 346 (448)
T PF09818_consen 284 PDAV--KIR------AE----D----GRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLI 346 (448)
T ss_pred CCce--EEE------ec----C----CceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEE
Confidence 1100 010 00 0 11234556889999999999987 333457799999999999999999999999
Q ss_pred eccCCCCCHHH-----HHHH----------HHHHHHHc--CCc-eEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 352 DEATSALDSRS-----ELLV----------RQAVDRLL--GHH-TVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 352 DEpts~LD~~~-----~~~i----------~~~l~~~~--~~~-tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
||=||+-.-.- ++.+ .+.++++. .+- ||+++.---+.+..||+|++|++=+-.
T Consensus 347 DEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 347 DEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred cCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 99999976543 3322 22233442 243 555554444667899999999987654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-08 Score=98.93 Aligned_cols=81 Identities=30% Similarity=0.342 Sum_probs=66.2
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
-++.+.-.+++|++++++|+||+|||||++.|+|..+|..|+|.+++..-.. ...++++.+++|+..+++.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3556666788999999999999999999999999999999999998754322 2335679999999999988777777
Q ss_pred cCCC
Q 014366 284 GYRD 287 (426)
Q Consensus 284 ~~~~ 287 (426)
.+..
T Consensus 261 ~l~~ 264 (356)
T PRK01889 261 QLWD 264 (356)
T ss_pred cccC
Confidence 6653
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-08 Score=92.20 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=61.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH-----HcCCCCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN-----IGYRDLMTK 291 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en-----i~~~~~~~~ 291 (426)
+++|+||||||||||.+.|.+++ ..|.+.+-+ +|.+..+.+..++ ..+..+. .
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~-------------------~D~~~~~~~~~~~~~~~~~~~~~~~-~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS-------------------QDSYYKDLSHEELEERKNNNYDHPD-A 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE-------------------ecccccccccccHHHhccCCCCCCC-c
Confidence 48999999999999999999988 334443333 3322111111111 1111111 1
Q ss_pred CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
.+.+...+.+.. +. .| ..+..+..+.|.|++++..+ .+.+|+++|+|+|+...++.
T Consensus 59 ~~~~~~~~~l~~-----l~----~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 59 FDFDLLISHLQD-----LK----NG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred ccHHHHHHHHHH-----HH----CC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 222222222221 11 11 12333456788888776555 57889999999999999863
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=106.54 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=68.2
Q ss_pred CCCCCCChHHHHHHHHHHHh------cCC--CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcC
Q 014366 323 PRGSSLSGGQRQRLAIARAL------YQN--SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAK 393 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal------~~~--p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D 393 (426)
....+|||||+=.++||-+| ..+ -+.++|||||..||+++...+.+.|..+.. +.+|++|||+.+....+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 45679999999876666554 456 699999999999999999999999999865 589999999999999999
Q ss_pred EEEEEeCC
Q 014366 394 RVFLLDNG 401 (426)
Q Consensus 394 ~i~vl~~G 401 (426)
.++.++..
T Consensus 891 ~~i~V~k~ 898 (908)
T COG0419 891 VRIRVKKD 898 (908)
T ss_pred eEEEEEec
Confidence 99988754
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-06 Score=94.93 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=41.9
Q ss_pred HhcCCCCEEEeeccCCCCC-HHHHHHHHHHHHHHc-CCceEEEeccChHHH
Q 014366 341 ALYQNSSVLILDEATSALD-SRSELLVRQAVDRLL-GHHTVLVIAHHLETV 389 (426)
Q Consensus 341 al~~~p~illlDEpts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~ 389 (426)
.+-.+|.++++|||...|| +...+.+.+.++..+ .+..++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567899999999999999 788889999988875 367899999998664
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=95.29 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=72.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC--Ccc-EEEEcCEeCCCCCHHHHhcceEEEecCCC-----CCcccHHHHHc
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP--LSG-CILVDDHDVQNIRLDSLRRHVGLVSQDIT-----LFSGTVAENIG 284 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-----lf~~ti~eni~ 284 (426)
++|..++|+||+||||||++++|++.+.+ .++ .|.....++ ++..+.++...++++|... -|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48899999999999999999999999843 334 565554444 4555555556788888642 35668888886
Q ss_pred CCCCC----CCCCHHHHHHHHHH-------------hchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 285 YRDLM----TKIDMERVEHTART-------------ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 285 ~~~~~----~~~~~~~~~~~~~~-------------~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
..... .-.+.+.+..+++. .++.+.+.++- ..+|+||+--+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~-----------~~~~~~~~~~~ 268 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLV-----------GSFPAEERIGR 268 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHH-----------HhCCccchhhH
Confidence 53211 11234445556665 44445555542 35788876433
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.2e-08 Score=98.00 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=58.9
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHh----cceEEEecCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLR----RHVGLVSQDI 272 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~I~~~g~~i~~~~~~~~r----~~i~~v~Q~~ 272 (426)
.+++++ +++.+||+++|+|+||+|||||+++|++..+++. |.|-.+|.++.++..+.++ +++++|+...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 589999 9999999999999999999999999999999987 8999999988776544433 5677777644
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.5e-08 Score=87.42 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=46.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~ 272 (426)
|++++|+||||||||||+++|++...| .+.+.+..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 5888888777655555667788888875
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-07 Score=101.36 Aligned_cols=67 Identities=22% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHhcC--CCCEEEeecc---CCCCCHHH-HHHHHHHHHHHcCCceEEEeccChHHHHhcCE
Q 014366 327 SLSGGQRQRLAIARALYQ--NSSVLILDEA---TSALDSRS-ELLVRQAVDRLLGHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~--~p~illlDEp---ts~LD~~~-~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~ 394 (426)
.+|.-+.....+++++-. ++.++|+||| |+.+|... ...+.+.|.+. .+++++++||..+....+++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence 456666666666666654 8999999999 99999654 22244444332 24789999999776666654
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=109.39 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=56.0
Q ss_pred CCCCCCCChHHHHHHH----HHHH--------hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 322 GPRGSSLSGGQRQRLA----IARA--------LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~----iARa--------l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
..+...||||||||++ +|++ +..+|++++|||||++||+.+...+++.+.++ +.++||+||++-
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 3346899999999996 5755 55899999999999999999999999999888 678999999873
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-07 Score=86.01 Aligned_cols=65 Identities=23% Similarity=0.379 Sum_probs=46.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc-ceEEEecCCCCC-cccHHHHHc
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HVGLVSQDITLF-SGTVAENIG 284 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~-~i~~v~Q~~~lf-~~ti~eni~ 284 (426)
+||+++|+|+|||||||++++|++++.| +.++|.++... ..+|+ ..++.+|+...+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999877 58899877432 22332 356666664433 335555553
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-07 Score=87.34 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=38.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHH---hcceEEEecCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLL-RLYDPLSGCILVDDHDVQNIRLDSL---RRHVGLVSQDI 272 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~I~~~g~~i~~~~~~~~---r~~i~~v~Q~~ 272 (426)
-+++|+.+.|.||+|||||||...++ ....+.++.+++.... +.+++ .+.+++.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 58899999999999999999987554 2334555667776532 23332 33466666643
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-07 Score=87.97 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=27.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=100.51 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=36.7
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDD 250 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g 250 (426)
-+++..+++++++|+|++|+|||||++.+.+ +....+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 3567788899999999999999999999954 4455689998875
|
syringae 6; Provisional |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.8e-07 Score=81.14 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=44.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-----------cCEeCCCCCHHHH-----hcceEEEecCCCCCcc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-----------DDHDVQNIRLDSL-----RRHVGLVSQDITLFSG 277 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~lf~~ 277 (426)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.+++ .+.++.++|...++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65544 5555555554443 2347788887665544
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.7e-07 Score=94.68 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--------EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSG--------CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--------~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
..+.+.|+||+|+||||+++++.++.++..| -+.++|.++. .+...+ .|-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence 4567999999999999999999998865444 4777765542 122111 11112
Q ss_pred CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHH
Q 014366 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~ 365 (426)
+.. .+...+...+.++..++.+.. ......+||| +|+||| +..||+..+..
T Consensus 234 g~~-~~~~~~~a~~~l~~~gl~~~~-----------~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~ 284 (615)
T TIGR02903 234 GSV-HDPIYQGARRDLAETGVPEPK-----------TGLVTDAHGG----------------VLFIDE-IGELDPLLQNK 284 (615)
T ss_pred CCc-cHHHHHHHHHHHHHcCCCchh-----------cCchhhcCCC----------------eEEEec-cccCCHHHHHH
Confidence 211 000011122233333333222 2233577888 999999 79999999999
Q ss_pred HHHHHHH
Q 014366 366 VRQAVDR 372 (426)
Q Consensus 366 i~~~l~~ 372 (426)
+.+.+++
T Consensus 285 Ll~~Le~ 291 (615)
T TIGR02903 285 LLKVLED 291 (615)
T ss_pred HHHHHhh
Confidence 9999875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-07 Score=93.28 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=59.7
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEc---CEeCCCCCHHHHh---cceEEE-----ec
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVD---DHDVQNIRLDSLR---RHVGLV-----SQ 270 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~---g~~i~~~~~~~~r---~~i~~v-----~Q 270 (426)
.+++++ |++.+||+++|+|+||||||||+++|+|+.++ +.|.|.+. |.++.++..+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 478887 99999999999999999999999999999854 44667664 4666555444443 235556 89
Q ss_pred CCCC-----C-cccHHHHHcC
Q 014366 271 DITL-----F-SGTVAENIGY 285 (426)
Q Consensus 271 ~~~l-----f-~~ti~eni~~ 285 (426)
+|.. + ..++.|.++.
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~ 252 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRD 252 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHH
Confidence 8742 1 2367787753
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.3e-06 Score=90.59 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=48.7
Q ss_pred HHhcCCCCEEEeeccCCCCC-HHHHHHHHHHHHHHc-CCceEEEeccChHHH----------HhcCEEEEEeCCE
Q 014366 340 RALYQNSSVLILDEATSALD-SRSELLVRQAVDRLL-GHHTVLVIAHHLETV----------MMAKRVFLLDNGK 402 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~----------~~~D~i~vl~~G~ 402 (426)
+.+-.+|+++++|||+..|| +...+.+.+.++..+ .+.+++++||+++.+ ..|+..++|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 33456899999999999999 677888888888774 467999999998744 2466666666643
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-06 Score=71.18 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc------CCceEEEeccChH
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL------GHHTVLVIAHHLE 387 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~ 387 (426)
.+.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556666777889999999998765 6666777788887763 3568888888654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-07 Score=88.89 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=53.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~------~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|.... .....+..+.+++|.....+. ++++++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999999999999889999988776432 112235568888886544332 445554
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.9e-07 Score=91.08 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=57.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
..++.++++..|..+ ..+++++ +++.+||+++|+|+||+|||||+++|+|..+++.|.+.+.|..-
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 357778888888654 4699999 99999999999999999999999999999999999888877643
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-07 Score=91.05 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=49.9
Q ss_pred CcceeeeEEE---eCCCE-----EEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 014366 203 LVLDQLNLHI---RAGET-----VALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 203 ~~l~~isl~i---~~Ge~-----~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.+++++++++ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4788888887 67776 9999999999999999999999875 588999998876554444443
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-07 Score=92.87 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=56.5
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
++|++..|+.. .+++++++.+..|+.++++||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~--~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH--HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888643 5899999999999999999999999999999999999999999999886653
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=99.67 Aligned_cols=143 Identities=15% Similarity=0.268 Sum_probs=81.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH----hcCCCCC-ccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL----LRLYDPL-SGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll----~g~~~p~-~G~I~~~g~~i~~~~~~~~ 261 (426)
.+.++|+ .+|++.+. --.-|.| .+| +++|+|||||||||++.+| .|..+|. +|.+++.+.++... ...
T Consensus 5 kl~i~g~-rSf~~~~~-~~~~I~F--~~~-~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~ 77 (1311)
T TIGR00606 5 KMSILGV-RSFGIEDK-DKQIIDF--FSP-LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDV 77 (1311)
T ss_pred eeeeece-ecCCCccc-cceeeec--ccc-eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--Hhh
Confidence 4778887 35643110 0122344 344 9999999999999999999 5999996 78888887665432 355
Q ss_pred hcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 262 RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+..|.++|++..-...+|.-.+............. +.......++|-...+..+...++.+..+.+.+..+
T Consensus 78 ~a~V~l~F~~~~g~~~~v~R~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~ 148 (1311)
T TIGR00606 78 RAQIRLQFRDVNGEECAVVRSMVCTQKTKKTEFKT---------LEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKA 148 (1311)
T ss_pred hheeEEEEEcCCCCEEEEEeeeeeeeccCcccchh---------hhhhheecCCCceeeccccHHHHHHHHHHHhCCCHH
Confidence 67788888754333222222221110000000000 111111223343333444555777889999988887
Q ss_pred hcCC
Q 014366 342 LYQN 345 (426)
Q Consensus 342 l~~~ 345 (426)
.+.+
T Consensus 149 ~f~~ 152 (1311)
T TIGR00606 149 VLNN 152 (1311)
T ss_pred HHhh
Confidence 7664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.4e-06 Score=72.11 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=36.2
Q ss_pred cCCCCCCCChHHHHHHHHHHH-----hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH
Q 014366 321 IGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARa-----l~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 373 (426)
+..+...+|++++++...... ....|+++ |+|++|.....++.+.|.++
T Consensus 116 v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 116 VLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 444556678898887765554 24556766 99999999999999888754
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-06 Score=64.57 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=30.3
Q ss_pred ceeeeEEEeC-CCEEEEECCCCCcHHHHHHHHhcCCCCCc
Q 014366 205 LDQLNLHIRA-GETVALIGPSGGGKSTLAKLLLRLYDPLS 243 (426)
Q Consensus 205 l~~isl~i~~-Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~ 243 (426)
+++-++++.+ |+.+.|.|||||||||++.++.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445677775 57999999999999999999876554443
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=85.41 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 193 v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
++..|..+ ..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.+..-|++-
T Consensus 49 ~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 49 IDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred ceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 33445443 3589999 99999999999999999999999999999999998887766543
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=80.25 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=43.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 274 (426)
.++|+||+|||||||++.+.+.+++..| +.+-..+.......++....++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999887655 55545565554455566677888887654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-06 Score=83.06 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
+..++||.||||||||||++.|.+++++++|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 457999999999999999999999999999983
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.1e-06 Score=77.25 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHH--H-HhcCEEEEEeCC
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLET--V-MMAKRVFLLDNG 401 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~-~~~D~i~vl~~G 401 (426)
|+-+|..||.++..+|+.+..+| +-+||...+++.+.+.+... +.++++.+|.+.. + ..||++++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988887 78999999999999987753 4699999999854 3 479999999876
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 426 | ||||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-65 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-62 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-61 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 9e-61 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-58 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-57 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-54 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-53 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-53 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-51 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-50 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-49 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-49 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-49 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-49 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-49 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-48 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-48 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-46 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-43 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-40 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-39 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-34 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-33 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-31 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-26 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-22 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-21 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-20 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-20 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-20 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-20 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-20 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-20 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-20 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-19 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-19 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-19 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-19 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-19 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-17 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-17 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-17 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-17 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-17 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-16 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-15 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-15 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-15 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 7e-15 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-14 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-14 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-14 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-14 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-14 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-14 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-14 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-13 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-13 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-13 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-12 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-12 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-11 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-11 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 9e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-10 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-10 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-10 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-09 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-07 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 6e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 6e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 9e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 5e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 4e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-04 |
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 425 bits (1094), Expect = e-145
Identities = 144/420 (34%), Positives = 229/420 (54%), Gaps = 11/420 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LS+I ++ P +++ I + +R R ISK ++ ++ ++L V
Sbjct: 160 MFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLI 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSF 123
+ E+ RF ++++ + +K ++ +QLI AL F+L S S
Sbjct: 220 FGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSL 279
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
++ +S++ ++ P++ + +F++G A + LF + + + E +D
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV--IDR 337
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
GD++F N++F Y L +NL I AG+TVAL+G SG GKST+A L+ R YD
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D HD++ L SLR V LVSQ++ LF+ TVA NI Y + E++E AR
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARM 456
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LILDEATSALD+ SE
Sbjct: 457 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
++ A+D L + T LVIAH L T+ A + ++++G + E G+ H L++
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE------RGT-HSELLAQH 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 423 bits (1089), Expect = e-144
Identities = 143/420 (34%), Positives = 232/420 (55%), Gaps = 11/420 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L V +
Sbjct: 160 MFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLS 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSF 123
+ E RF ++++S + +K +++ +Q+I +L S+
Sbjct: 220 YGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAEL 279
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+ +++ ++ P++ + +EF++G A + LF L + +
Sbjct: 280 TPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGL--MDLETERDNGKYEAER 337
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
+NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R YD S
Sbjct: 338 VNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS 397
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E AR
Sbjct: 398 GSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA-EGEYTREQIEQAARQ 456
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSALD+ SE
Sbjct: 457 AHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
Query: 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
++ A+D L + TVLVIAH L T+ A + ++D G++ E G H L++
Sbjct: 517 RAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE------RGR-HADLLAQD 569
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 411 bits (1059), Expect = e-140
Identities = 143/420 (34%), Positives = 223/420 (53%), Gaps = 10/420 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + L+L + + P L + RLRK++++ ++A + +L+E + I VK+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSF 123
E E+ F + + L LK + A + + G + ++ G+ L GS
Sbjct: 216 FAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSI 275
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +F+ L + P++ + ++ Q +++R+F L + A ++
Sbjct: 276 TVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEI 335
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G + ++SF+Y DN +L +NL I GETVA +G SGGGKSTL L+ R YD S
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D H++++ SLR +GLV QD LFS TV ENI E V A+
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKM 453
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LILDEATSALD SE
Sbjct: 454 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513
Query: 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
++++A+D L T L++AH L T+ A ++ +++NG + E G H L++
Sbjct: 514 SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE------TG-THRELIAKQ 566
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 320 bits (824), Expect = e-109
Identities = 102/240 (42%), Positives = 151/240 (62%), Gaps = 11/240 (4%)
Query: 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
H + D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTA 301
+G +L+D HD+ + LRR VG+V QD L + ++ +NI M+ +E+V + A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMS---VEKVIYAA 119
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A A +F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 362 SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVS 421
SE ++ + + ++ TV++IAH L TV A R+ +++ GK+ E G H L+S
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE------QGK-HKELLS 232
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-109
Identities = 132/425 (31%), Positives = 218/425 (51%), Gaps = 22/425 (5%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M ++ +LSL++ ++P L+ + + RK ++ + L+ + E + + +K
Sbjct: 172 MFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKL 231
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKA------LIPQTVQLIYFGALFILCGGSLLV 118
E E +F R+ E L+K KA L P + G I G L
Sbjct: 232 FTREEKEMEKFDRVN-----ESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLA 286
Query: 119 SGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA 178
++ +FI P+ + +N + + ER+F++ + + + PDA
Sbjct: 287 LKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK-DDPDA 345
Query: 179 VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
V L + G+++F N+ F Y P+ L + HI+ G+ VAL+GP+G GK+T+ LL+R
Sbjct: 346 VELREVRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVE 298
YD G ILVD D++ I+ SLR +G+V QD LFS TV EN+ Y + E ++
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIK 462
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A+ ++D F++ LP+GY T + G LS GQRQ LAI RA N +LILDEATS +
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDS 418
D+++E ++ A+ +L+ T ++IAH L T+ A + +L +G++ E +G HD
Sbjct: 523 DTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE------MG-KHDE 575
Query: 419 LVSAG 423
L+
Sbjct: 576 LIQKR 580
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 321 bits (825), Expect = e-108
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 10/286 (3%)
Query: 138 MIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKY 197
+E +FDL K +++V + P A L G ++F N+ F Y
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY 63
Query: 198 ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257
AD L ++ + G+T+AL+GPSG GKST+ +LL R YD SGCI +D D+ +
Sbjct: 64 ADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
SLR H+G+V QD LF+ T+A+NI Y + + VE A+ A + + P+GY
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGY 180
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
T +G RG LSGG++QR+AIAR + + +++LDEATSALD+ +E ++ ++ ++ +
Sbjct: 181 RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR 240
Query: 378 TVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
T +V+AH L TV+ A ++ ++ +G + E R H++L+S G
Sbjct: 241 TTIVVAHRLSTVVNADQILVIKDGCIVE--RGR-----HEALLSRG 279
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 342 bits (878), Expect = e-107
Identities = 136/427 (31%), Positives = 210/427 (49%), Gaps = 22/427 (5%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
L+L+ + P + L + L + + + A A EVL AI V A
Sbjct: 203 GFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIA 262
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSF 123
+ E R+ +KK + L+ + + G+ LV +
Sbjct: 263 FGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEY 322
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV-IEKPDAVSLD 182
+++ S++ + F A +F + K + D
Sbjct: 323 SIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPD 382
Query: 183 HINGDVKFCNISFKYADNMP-----LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237
+I G+++F NI F Y P +L LNL +++G+TVAL+G SG GKST +L+ R
Sbjct: 383 NIQGNLEFKNIHFSY----PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 238 LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMER 296
LYDPL G + +D D++ I + LR +G+VSQ+ LF+ T+AENI Y R+ +T M+
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT---MDE 495
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
+E + ANA +F+ LP ++T +G RG+ LSGGQ+QR+AIARAL +N +L+LDEATS
Sbjct: 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATS 555
Query: 357 ALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416
ALD+ SE +V+ A+D+ T +VIAH L TV A + D G + E G+ H
Sbjct: 556 ALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE------QGN-H 608
Query: 417 DSLVSAG 423
D L+
Sbjct: 609 DELMREK 615
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-106
Identities = 116/422 (27%), Positives = 215/422 (50%), Gaps = 12/422 (2%)
Query: 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKAN 65
L+ L+L+ ++P +A+ + L + + + E + V +
Sbjct: 847 LIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL 906
Query: 66 NAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSFD 124
E + + +KK + + Q + + + G+ LV+
Sbjct: 907 TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMT 966
Query: 125 GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV-IEKPDAVSLDH 183
+++ +++VF + V ++ + + + + + ++ + +
Sbjct: 967 FENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 184 INGDVKFCNISFKY--ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
+ G+V+F + F Y ++P VL L+L ++ G+T+AL+G SG GKST+ +LL R YDP
Sbjct: 1027 LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
++G + +D +++ + + LR +G+VSQ+ LF ++AENI Y D + E + A
Sbjct: 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ AN +F+ +LP YNT +G +G+ LSGGQ+QR+AIARAL + +L+LDEATSALD+
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 362 SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVS 421
SE +V++A+D+ T +VIAH L T+ A + ++ NGK++E G+ H L++
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE------HGT-HQQLLA 1258
Query: 422 AG 423
Sbjct: 1259 QK 1260
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = e-103
Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 9/236 (3%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ ++ F Y D+ +L ++ + +A GPSGGGKST+ LL R Y P +G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D + NI L++ R +G VSQD + +GT+ EN+ Y L E + A A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTY-GLEGDYTDEDLWQVLDLAFAR 119
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
FV +P NT +G RG +SGGQRQRLAIARA +N +L+LDEAT++LDS SE +V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 368 QAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423
+A+D L+ T LVIAH L T++ A +++ ++ G++ G H+ LV+
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG------SGK-HNELVATH 228
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = e-101
Identities = 90/250 (36%), Positives = 126/250 (50%), Gaps = 19/250 (7%)
Query: 181 LDHINGDVKFCNISFKYADNMP-----LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
++ G VKF ++SF Y P VL L + G+ AL+GP+G GKST+A LL
Sbjct: 10 PLNMKGLVKFQDVSFAY----PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME 295
LY P G +L+D + L V V Q+ LF + ENI Y L ME
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTME 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ A + A +F+ PQGY+T +G G+ LSGGQRQ +A+ARAL + +LILD AT
Sbjct: 125 EITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNAT 184
Query: 356 SALDSRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413
SALD+ ++L V++ + TVL+I L A + L G + E G
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCE------QG 238
Query: 414 SNHDSLVSAG 423
+ H L+ G
Sbjct: 239 T-HLQLMERG 247
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 1e-98
Identities = 89/252 (35%), Positives = 141/252 (55%), Gaps = 13/252 (5%)
Query: 174 EKPDAVSLDHINGDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
+++F +++F Y L +N I +G T AL+G +G GKST+A
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTK 291
KLL R YD G I + +V +S+R +G+V QD LF+ T+ NI Y + T
Sbjct: 64 KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT- 121
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
E V ++A +F+ LP+ ++T +G +G LSGG+RQR+AIAR L ++ ++I
Sbjct: 122 --DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTL 411
DEATS+LDS++E L ++AV+ L + T+++IAH L T+ A+ + LL+ GK+ E + T
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVE--KGT- 236
Query: 412 LGSNHDSLVSAG 423
H L+
Sbjct: 237 ----HKDLLKLN 244
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 305 bits (783), Expect = 2e-98
Identities = 112/421 (26%), Positives = 207/421 (49%), Gaps = 35/421 (8%)
Query: 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKAN 65
+ I+ LS + +IP + L+ +L ++ + ++ S ++ + E L + V+A
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAF 218
Query: 66 NAEMCESARFRRLAHSDLCELLKK--RKMKALIPQTVQLIYFGALFILCGGSLLVSGGSF 123
E E+ FR+ A+ L + + +P + ++ G + +L G +LV
Sbjct: 219 RREEYENENFRK-ANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQM 277
Query: 124 DGCSLVSFIT------------SLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK 171
+ S++++ + + +R+ ++ K
Sbjct: 278 EIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASA------------SAKRVLEVLNEKPA 325
Query: 172 VIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
+ E +A++L ++ G V F N+ F+Y +N VL +N ++ G VA++G +G GKSTL
Sbjct: 326 IEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTL 385
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
L+ RL DP G + VD+ DV+ ++L LR H+ V Q+ LFSGT+ EN+ +
Sbjct: 386 MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR--ED 443
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
+ + A+ A +F+ +LP+GY++ + G + SGGQ+QRL+IARAL + VLIL
Sbjct: 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL------EE 405
D+ TS++D +E + + R T +I + T ++A ++ +L GK+ +E
Sbjct: 504 DDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563
Query: 406 L 406
L
Sbjct: 564 L 564
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 2e-64
Identities = 55/241 (22%), Positives = 112/241 (46%), Gaps = 4/241 (1%)
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
G + +++ KY + +L+ ++ I G+ V L+G +G GKSTL LRL + G
Sbjct: 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EG 75
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
I +D +I L+ R+ G++ Q + +FSGT +N+ D + + A
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEV 132
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+ P + + G LS G +Q + +AR++ + +L+LDE ++ LD +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 365 LVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAGL 424
++R+ + + TV++ +E ++ + +++ K+ + + L AG
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 425 V 425
+
Sbjct: 253 I 253
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 8e-44
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 20/226 (8%)
Query: 187 DVKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
++ N+S + PL L+ ++L I GE + + G +G GKSTL +++ L +P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--RDLMTKIDMERVEH 299
G +L D + + +RR++G+ Q + F+ V + + + ++ D
Sbjct: 62 GDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP--- 115
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A EFV + P LSGG+++R+AIA + +LILDE LD
Sbjct: 116 --LVKKAMEFVGLDFDSFKDR-VP--FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 360 SRSELLVRQAVDRL-LGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
+ + + V++ TV++I+H +ETV+ RV +L+ GK
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-43
Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 29/251 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K +++ Y+D L +N++I+ GE A++G +G GKSTL + + P SG IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 248 VDDHDVQNIR--LDSLRRHVGLVSQ--DITLFSGTVAE-------NIGYRDLMTKIDMER 296
D+ + R + LR +G+V Q D LFS +V + N+ + + +R
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR---KR 123
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
V++ + + LS GQ++R+AIA L VLILDE T+
Sbjct: 124 VDNALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTA 172
Query: 357 ALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413
LD + + + + T+++ H ++ V VF++ G++ +
Sbjct: 173 GLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232
Query: 414 SNHDSLVSAGL 424
+ + + L
Sbjct: 233 AEKEVIRKVNL 243
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-41
Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 30/233 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ I +L +++ I G+ L G +G GK+TL +L SG +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 248 VDDHDVQNIRLD--SLRRHVGLVSQDITL---FSGTVAEN--------IGYRDLMTKIDM 294
+ + ++R+H+G VS + V + IG +
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354
+ + LS G++QR+ IARAL VLILDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYI-----------GYLSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 355 TSALDSRSELLVRQAVDRLLGHH---TVLVIAHHLETVMMA-KRVFLLDNGKL 403
+ LD + + +D L + ++ + H +E + ++ LL +G+
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQS 241
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-39
Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+V N++ + + VL +N I G+ +A+ G +G GK++L +++ +P G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDMERVEHTART 303
I + SQ + GT+ ENI + D R +
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENI----IFGVSYDEYRYRSVIKA 106
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-S 362
+E + + N +G G +LSGGQR R+++ARA+Y+++ + +LD LD
Sbjct: 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 363 ELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+ + V +L+ + T +++ +E + A ++ +L G
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-39
Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 188 VKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++ N+ + L+ +NL + GE V ++GP+G GK+TL + + L P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG--TVAENIGYRDLMTKIDMERVEHTART 303
I ++ +V+ +R ++ + + TV + + + + +D + +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 304 AN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+E +R LS GQ + + AL ++ LDE +D+
Sbjct: 115 LKLGEEILRRKL-----------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 363 ELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKR-VFLLDNGKLE 404
++ + + +++ H L+ + + + L +L+
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-36
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+ N +F +A + P L+ + I G VA++G G GKS+L LL D + G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDMERVEHTARTA 304
+ + + V V Q + + ++ ENI L ++ +
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENI----LFGCQLEEPYYRSVIQAC 104
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-SE 363
+ LP G T IG +G +LSGGQ+QR+++ARA+Y N+ + + D+ SA+D+ +
Sbjct: 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 364 LLVRQAVDR--LLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+ + +L + T +++ H + + + ++ GK+ E
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-35
Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 164 DLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGP 223
+ K + + + + + F N S VL +N I G+ +A+ G
Sbjct: 17 GFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGS 72
Query: 224 SGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283
+G GK++L +++ +P G I + SQ+ + GT+ ENI
Sbjct: 73 TGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQNSWIMPGTIKENI 119
Query: 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343
+ D R + +E + + N +G G +LSGGQR R+++ARA+Y
Sbjct: 120 ----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 175
Query: 344 QNSSVLILDEATSALDSR-SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402
+++ + +LD LD + + V +L+ + T +++ +E + A ++ +L G
Sbjct: 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235
Query: 403 LEE 405
Sbjct: 236 SYF 238
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 3e-35
Identities = 55/278 (19%), Positives = 107/278 (38%), Gaps = 42/278 (15%)
Query: 139 IEPIQGVGKAYNEFKQGE-PAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKY 197
+ N F +G PA + K + E D + +K+ I K
Sbjct: 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 198 ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---- 253
D L N + GE + ++GP+G GK+T A++L+ G + + +
Sbjct: 280 GDF---QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKP 336
Query: 254 QNIRLD---SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
Q I + ++++++ S+D S E + +R+
Sbjct: 337 QRIFPNYDGTVQQYLENASKDALSTSSWFFEEV----------TKRLN------------ 374
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
L + +++ + LSGG+ Q+L IA L + + + +LD+ +S LD +V +A+
Sbjct: 375 --LHRLLESNV----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428
Query: 371 DRLLGHH--TVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
R+ +I H L +A R+ + +
Sbjct: 429 KRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKA 466
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 24/226 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHI-RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILV 248
+ +Y N L + + ++G +G GK+T+ K+L P G V
Sbjct: 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60
Query: 249 DDHDV-QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-------DMERVEHT 300
+V + R + + + + + I Y + +K + +++
Sbjct: 61 GKDEVLKRFRGKEIYNYFKELYSNEL----KIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
+ E + + +N + LSGG QRL +A +L + + V I D+ +S LD
Sbjct: 117 GKKDEVKELL-NMTNLWNKDA----NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV 171
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
R + + +A+ LL + V+V+ H L + + + ++
Sbjct: 172 RERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-34
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+ F Y + QLN + G+ +A++G +G GKSTL LLL ++ P+ G I
Sbjct: 9 NLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI----- 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAE--------NIGYRDLMTKIDMERVEHTAR 302
+ + +G V Q + F+ +V + +I D +
Sbjct: 63 --------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114
Query: 303 TANADEFV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
N R +SLSGGQRQ + IARA+ +++LDE TSALD
Sbjct: 115 YLNLTHLAKREF------------TSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 362 SELLVRQAVDRLL--GHHTVLVIAHHLETVMM-AKRVFLLDNGKL 403
++ +V + L + TV+ H V+ A + LL+
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-34
Identities = 52/279 (18%), Positives = 101/279 (36%), Gaps = 38/279 (13%)
Query: 148 AYNEFKQGEPAIERL-FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLD 206
N F G E L F + ++ + + + D + + ++ D VL+
Sbjct: 313 GINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF---VLN 369
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266
E + ++G +G GK+TL KLL P G D+ + + + +
Sbjct: 370 VEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG------QDIPKLNVSMKPQKIA 423
Query: 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324
LF + ++ + + D+ + Q
Sbjct: 424 PKFPGTVRQLFFKKIRGQF--------LNPQFQTDVVKPLRIDDIIDQEVQ--------- 466
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVLVI 382
LSGG+ QR+AI AL + + ++DE ++ LDS ++ + + R + H+ T ++
Sbjct: 467 --HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIV 524
Query: 383 AHHLETV-MMAKRVFLLDNGKLEEL----NRSTLLGSNH 416
H +A +V + + + S L G N
Sbjct: 525 EHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNR 563
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-29
Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 22/228 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---LV 248
+++ +Y+ N L +L R G+ + L+G +G GKST K+L P G
Sbjct: 82 HVTHRYSAN-SFKLHRLPT-PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE 139
Query: 249 DDHDVQNIRLDSLRRHVGLVSQDI--TLFSGTVAENIGYR---DLMTKIDMERVEHTART 303
++ R L+ + + +D + +NI + ++ ++
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSP 199
Query: 304 ANADEFVRTLPQGYNTHIGPRG----SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ +++ L + LSGG+ QR AI + Q + V + DE +S LD
Sbjct: 200 EDVKRYIKIL------QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Query: 360 SRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ L Q + LL V+ + H L + ++ V ++
Sbjct: 254 VKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-34
Identities = 78/230 (33%), Positives = 115/230 (50%), Gaps = 22/230 (9%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ F L+ ++LH+ AG+ +IG SG GKSTL + + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 246 ILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA 301
+LVD ++ + L RR +G++ Q L S TV N+ + + + E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVKR 142
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
R V G S+LSGGQ+QR+AIARAL N VL+ D+ATSALD
Sbjct: 143 RVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 362 S-----ELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
+ ELL ++R LG T+L+I H ++ V + V ++ NG+L E
Sbjct: 198 TTRSILELLKD--INRRLG-LTILLITHEMDVVKRICDCVAVISNGELIE 244
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 3e-33
Identities = 61/264 (23%), Positives = 115/264 (43%), Gaps = 42/264 (15%)
Query: 150 NEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD--VKFCNISFKYADNMPLVLDQ 207
NEF QG E + +F+ I + + V++ + Y L+
Sbjct: 322 NEFLQGYLKDENV----RFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF---KLEV 374
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDSLRRH 264
IR GE + ++GP+G GK+T K+L + +P G + D Q I+ +
Sbjct: 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE----- 429
Query: 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324
+ GTV +L++KID ++ + + + Y+ ++
Sbjct: 430 ----------YEGTV------YELLSKIDSSKLNSNFYKTELLKPLG-IIDLYDRNV--- 469
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVLVI 382
LSGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ L+ + T LV+
Sbjct: 470 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 383 AHHLETV-MMAKRVFLLDNGKLEE 405
H + + ++ R+ + + G+
Sbjct: 529 EHDVLMIDYVSDRLIVFE-GEPGR 551
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-26
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP------LSGC 245
+ +Y N VL +L + ++ G V ++GP+G GK+T K+L P S
Sbjct: 96 DCVHRYGVNA-FVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDI---------TLFSGTVAENIGYRDLMTKID-ME 295
++ ++ R G + + G V E L+ K+D +
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE------LLKKVDEVG 207
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ E + L + + LSGG+ QR+AIA AL + + DE +
Sbjct: 208 KFEEVVKELE-------LENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPS 256
Query: 356 SALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVM-MAKRVFLLDNGK 402
S LD R L V + + RL VLV+ H L + ++ + ++
Sbjct: 257 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-33
Identities = 38/204 (18%), Positives = 81/204 (39%), Gaps = 23/204 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL+++ + I G V GP+G GK+TL K + PL G I+ + + + +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KG 78
Query: 264 HVGLVSQDITLFSG-TVAENIGY-RDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTH 320
+ + ++I + +V + + L K++ + + + + L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKL------- 131
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV 379
LS G +R+ +A L N+ + +LD+ A+D S+ V +++ +L V
Sbjct: 132 -----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 380 LVIAHHLETVMMAKRVFLLDNGKL 403
++ + + L
Sbjct: 187 IISSREELSY--CDVNENLHKYST 208
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-33
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 13/204 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L ++ I GE LIGP+G GK+T +++ L P SG + V +V +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHI 321
+ + ++ + E + + E A E G I
Sbjct: 89 LISYLPEEAGAYRNMQGIEYL---RFVAGFYASSSSEIEEMVERATEIA-----GLGEKI 140
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH-TVL 380
R S+ S G ++L IARAL N + ILDE TS LD + VR+ + + T+L
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 381 VIAHHLETV-MMAKRVFLLDNGKL 403
V +H++ V + R+ L+ NG +
Sbjct: 201 VSSHNMLEVEFLCDRIALIHNGTI 224
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 24/226 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F + Y + ++ IR GE V L+GPSG GK+T+ +L+ L P G +
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+ V + L +R+VGLV Q+ LF TV +N+ + ++ + E AR
Sbjct: 74 IGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP--KDEMDARVREL 129
Query: 307 DEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDS----- 360
F+R R LSGGQ+QR+A+ARAL VL+ DE +A+D+
Sbjct: 130 LRFMRL------ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183
Query: 361 -RSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404
R+ + RQ D + T + + H E + +A RV +L G +E
Sbjct: 184 LRTFV--RQVHDEM--GVTSVFVTHDQEEALEVADRVLVLHEGNVE 225
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 6e-33
Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 41/275 (14%)
Query: 139 IEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD--VKFCNISFK 196
+G NEF +G E + +F+ I+ I + V + +
Sbjct: 241 FSQPKGTRNGINEFLRGYLKDENV----RFRPYEIKFTKTGERVEIERETLVTYPRLVKD 296
Query: 197 YADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--- 253
Y L+ I+ GE + ++GP+G GK+T K+L + +P G I D
Sbjct: 297 YGSF---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKP 353
Query: 254 QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL 313
Q I+ D + GTV +L++KID ++ + + +
Sbjct: 354 QYIKAD---------------YEGTV------YELLSKIDASKLNSNFYKTELLKPLG-I 391
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
Y+ + + LSGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ L
Sbjct: 392 IDLYDREV----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 374 LGHH--TVLVIAHHLETV-MMAKRVFLLDNGKLEE 405
+ + T LV+ H + + ++ R+ + + +
Sbjct: 448 MEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKY 482
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 35/231 (15%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP------LSGC 245
+ +Y N VL +L + ++ G V ++GP+G GKST K+L P S
Sbjct: 26 DCVHRYGVNA-FVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDI---------TLFSGTVAENIGYRDLMTKIDMER 296
++ ++ + G + + G V E + D + +
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGK 138
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
+E + + + LSGG+ QR+AIA AL +N++ DE +S
Sbjct: 139 LEEVVKALELENVLEREI-----------QHLSGGELQRVAIAAALLRNATFYFFDEPSS 187
Query: 357 ALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
LD R L +A+ RL +VLV+ H L + ++ + ++
Sbjct: 188 YLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 8e-33
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L L+ +RAGE + L+GP+G GKSTL + + G I ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 264 HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV-RTLPQGYNTHI 321
H +SQ T F+ V + K E + A D+ + R+ Q
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLT-LHQHDKTRTELLNDVAGALALDDKLGRSTNQ------ 126
Query: 322 GPRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVDRLL 374
LSGG+ QR+ +A + Q +L+LDE ++LD + + + + L
Sbjct: 127 ------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 375 GH-HTVLVIAHHLE-TVMMAKRVFLLDNGKL 403
+++ +H L T+ A R +LL GK+
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 211
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 4e-30
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 29/215 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDPLSGCILVDDHDV--QNIR 257
VL+ ++L + GE + +IG SG GK+TL LR P SG I + + +N
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTL----LRCLAGFEQPDSGEISLSGKTIFSKNTN 74
Query: 258 LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQG 316
L R +G + Q+ LF TV NI Y K + R E +
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK--GRTAQERQRIEAMLELTG-IS-- 129
Query: 317 YNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSELLVRQAVDRL 373
+ R LSGGQ+QR A+ARAL + +++LDE SALD R ++ R+ +
Sbjct: 130 ---ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI--REDMIAA 184
Query: 374 ---LGHHTVLVIAH-HLETVMMAKRVFLLDNGKLE 404
G V V +H E + A R+ ++ G++
Sbjct: 185 LRANGKSAVFV-SHDREEALQYADRIAVMKQGRIL 218
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-30
Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 27/225 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++S K+ + LD L+L + +GE ++GP+G GK+ +L+ + P SG IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM-ERVEHTARTAN 305
+D DV ++ + + V Q+ +LF V +N+ + M KI +RV TAR
Sbjct: 59 LDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSE 363
+ + P +LSGG++QR+A+ARAL N +L+LDE SALD +
Sbjct: 117 IEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 364 LLVRQAVDRL---LGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404
R+ + L TVL I H MA R+ ++ +GKL
Sbjct: 166 A--REMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLI 207
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 3e-29
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 22/229 (9%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+ N+S + + LD +N++I GE ++GPSG GK+T +++ L P +G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 247 LVDDHDVQNIRLDSL---RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVE 298
DD V + + R +G+V Q L+ T ENI + K+ +RVE
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A+ + + P LSG Q+QR+A+ARAL ++ S+L+LDE S L
Sbjct: 123 EVAKILDIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 359 DSRSELLVRQAVDRL---LGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404
D+R R V + LG ++V + +A RV +L GKL
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-29
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 22/232 (9%)
Query: 188 VKFCNI--SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
VK N+ ++K + + L +NL+I+ GE V+++GPSG GKST+ ++ L P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 246 ILVDDHDVQNIRLDSL----RRHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMER 296
+ +D+ ++ D L R +G V Q L T EN+ ++ + M
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKY---RGAMSG 118
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E R + L + + H + + LSGGQ+QR+AIARAL N +++ D+ T
Sbjct: 119 EERRKRALECLKMAE-LEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTW 174
Query: 357 ALDSRSELLVRQAVDRL---LGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
ALDS++ + Q + +L G TV+V+ H + +R+ L +G++E
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-28
Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 25/214 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-- 261
+L ++L ++ GE V++IG SG GKSTL +L L P G + ++ +V L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 262 --RRHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLP 314
R +G V Q L T EN+ + E R +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMG------KPKKEAKERGEYLLSEL---- 128
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
G + + LSGG++QR+AIARAL +L DE T LDS + V ++
Sbjct: 129 -GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI- 186
Query: 375 GH---HTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+ +++++ H E + R + +GK+
Sbjct: 187 -NEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-28
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 28/211 (13%)
Query: 207 QLNLHIRAG-ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265
+LN+ G + L+GP+G GKS +L+ + P G + ++ D+ + RR +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGI 72
Query: 266 GLVSQDITLFSG-TVAENIGY--RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G V QD LF +V NI Y R+ +ERVE R E + H+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRN------VERVERDRRVREMAEKLGI------AHLL 120
Query: 323 PRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDS------RSELLVRQAVDRLLG 375
R + LSGG+RQR+A+ARAL +L+LDE SA+D EL Q R
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ---REFD 177
Query: 376 HHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406
+ V +E M+A V ++ NG++ E
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-28
Identities = 62/164 (37%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSL 261
VL +N+HIR GE V +IGPSG GKST + L L D G I++D +++ L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME---RVEHTARTANADEFVRTLPQ-- 315
R VG+V Q LF TV NI +V R A+ L
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNI----------TLAPMKVRKWPR-EKAEAKAMELLDKV 147
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
G SLSGGQ QR+AIARAL +++ DE TSALD
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 5e-26
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 35/178 (19%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VL ++L RAG+ +++IG SG GKST + + L P G I+V+ ++ +R
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 258 -------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME---RVEHTAR---T 303
L LR + +V Q L+S TV EN+ ME +V ++
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV----------MEAPIQVLGLSKHDAR 130
Query: 304 ANADEFVRT--LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A +++ + + P LSGGQ+QR++IARAL VL+ DE TSALD
Sbjct: 131 ERALKYLAKVGIDERAQGKY-P--VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 29/229 (12%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
++K NI K+ + L+ +NL I+ GE +AL+GPSG GKSTL + +Y P SG I
Sbjct: 3 EIKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTA 301
D+ DV L R+VGLV Q+ L+ TV +NI + + K ++V A
Sbjct: 61 YFDEKDVTE--LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS- 360
+ + D+ + P LSGGQ+QR+AIARAL + VL+LDE S LD+
Sbjct: 119 KMLHIDKLLNRYP-----------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL 167
Query: 361 -----RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404
R+EL + + + LG TV V E + MA R+ ++ G++
Sbjct: 168 LRLEVRAEL---KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL 213
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 29/229 (12%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+VK N++ ++ + +++LNL I+ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTA 301
D DV L R++ +V Q ++ TV ENI + + K +RV A
Sbjct: 69 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS- 360
+E + P + LSGGQRQR+A+ARA+ VL++DE S LD+
Sbjct: 127 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 361 -----RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404
R+E+ + + + L T+ V +E + M R+ +++ G+L
Sbjct: 176 LRVAMRAEI---KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 7e-21
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 30/219 (13%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD +++ + G+ +IGP+G GKSTL ++ G + ++ D+ N L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 265 VGLVS--QDITLFSG-TVAENI----------GYRDLMTKIDM-ERVEHTARTANADEFV 310
G+V Q TV EN+ L K + + E + EF+
Sbjct: 83 -GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-----L 365
+ + LSGGQ + + I RAL N ++++DE + +
Sbjct: 142 -----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA-PGLAHDIFNH 195
Query: 366 VRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403
V + + T L+I H L+ V+ ++++ NG++
Sbjct: 196 VLELKAK---GITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 29/229 (12%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
++ N+ + +D ++ ++ GE VAL+GPSG GK+T +L +Y P SG I
Sbjct: 3 SIRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTA 301
DD V + + R VG+V Q+ L+ TV ENI + +I +RV A
Sbjct: 61 YFDDVLVND--IPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS- 360
R D + P + LSGGQ+QR+A+ARAL + VL+ DE S LD+
Sbjct: 119 RKLLIDNLLDRKP-----------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
Query: 361 -----RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404
R+E+ + + + LG +V V E + MA R+ + + GKL
Sbjct: 168 LRMIMRAEI---KHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV 213
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 31/233 (13%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
V+ ++ + + + +++L ++ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 247 LVDDHDVQNIRLDSLR----RHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERV 297
+ D V + R + +V Q L+ TV +NI + + K+ +RV
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A E + P LSGGQRQR+A+ RA+ + V ++DE S
Sbjct: 121 REVAELLGLTELLNRKP-----------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 358 LDS------RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404
LD+ R+EL + + R LG T+ V +E + M R+ +++ G L+
Sbjct: 170 LDAKLRVRMRAEL---KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 2e-17
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 37/167 (22%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL- 261
+ ++L + G+ V LIG +G GK+T + L G I+ + D+ N +
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 262 RRHVGLVSQDITLFSG-TVAENI---GYR---DLMTKIDMERVEHTARTANADEFVRTLP 314
R + LV + +F TV EN+ Y K D+E + F
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--------FSLF----- 126
Query: 315 QGYNTHIGPR--------GSSLSGGQRQRLAIARALYQNSSVLILDE 353
PR G +LSGG++Q LAI RAL +L++DE
Sbjct: 127 --------PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDPL 242
V+ N++ + + + V +NL I GE V +GPSG GKSTL LR L
Sbjct: 3 SVQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTL----LRMIAGLETIT 56
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-----IDMER 296
SG + + + + + R VG+V Q L+ +VAEN+ + + I+ +R
Sbjct: 57 SGDLFIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN-QR 113
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
V A + P +LSGGQRQR+AI R L SV +LDE S
Sbjct: 114 VNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
Query: 357 ALD 359
LD
Sbjct: 163 NLD 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 5e-14
Identities = 71/424 (16%), Positives = 141/424 (33%), Gaps = 71/424 (16%)
Query: 7 VISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSA----------YLNEVL 56
V LS++ + L+ L ER I ++S + I ++ +L ++L
Sbjct: 244 VTPATLSIM-------VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLL 296
Query: 57 PAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILC---- 112
P + A A+ E+ A L + + A+ + L ++
Sbjct: 297 PGLKSNFATIADP-EAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLK 355
Query: 113 ---GGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFK 169
+ I + + Y E + + D + +
Sbjct: 356 DETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKR 415
Query: 170 SKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKS 229
+ D + CN F A ++L++ L ++ + GP+G GKS
Sbjct: 416 AVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKS 475
Query: 230 TLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288
TL + + VD Q R + + D ++ +G ++
Sbjct: 476 TLMRAIANGQ--------VDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA 527
Query: 289 MTKI------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342
+ E + S+LSGG + +LA+ARA+
Sbjct: 528 IKDKLIEFGFTDEMIAMPI------------------------SALSGGWKMKLALARAV 563
Query: 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH---LETVMMAKRVFLLD 399
+N+ +L+LDE T+ LD+ + + ++ T + I+H L+ V + + +
Sbjct: 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVFLDNV--CEYIINYE 619
Query: 400 NGKL 403
KL
Sbjct: 620 GLKL 623
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 5e-10
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH 385
LSGGQ+ +L +A +Q +++LDE T+ LD S + +A+ G V++I H
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG--GVIIITHS 957
Query: 386 LETV-MMAKRVFLLDNGKLE 404
E + + V+ + +G++
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 9e-08
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
VK N+ F+Y + +N +A+IGP+G GKSTL +L P SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 248 VDDH 251
++
Sbjct: 732 THEN 735
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 2e-12
Identities = 57/374 (15%), Positives = 116/374 (31%), Gaps = 114/374 (30%)
Query: 85 ELLKKRKMKALI--PQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLV-----F 137
+L K ++ +I V LF LL + F+ ++ F
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLR--LFWT----LLSKQEE----MVQKFVEEVLRINYKF 93
Query: 138 MIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISF-K 196
++ PI+ E +Q P++ + + D + D + F K
Sbjct: 94 LMSPIK------TEQRQ--PSMMT----RMYIEQR---------DRLYNDNQ----VFAK 128
Query: 197 YADNMPLVLDQLN---LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
Y + +L L +R + V + G G GK+ +A + + V
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL------------SYKV 176
Query: 254 QN--------IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
Q + L + ++ L + R +H++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-----------QIDPNWTSRSDHSSN--- 222
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD-----EATSALDS 360
+ + S R + Y+N +L+L +A +A +
Sbjct: 223 -------IKLRIH----------SIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNL 264
Query: 361 RSELLV----RQAVDRLLGHHTVLVIAHHLETVMM---AKRVFL--LDNGKLEELNRSTL 411
++L+ +Q D L T + H + K + L LD + ++L R L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVL 323
Query: 412 LGS-NHDSLVSAGL 424
+ S+++ +
Sbjct: 324 TTNPRRLSIIAESI 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 59/464 (12%), Positives = 136/464 (29%), Gaps = 157/464 (33%)
Query: 29 YLGERLRKISKQSHLSIASLSAYLNEVLPAI-LFVKANNAEMCESARFRRLAHSDLCELL 87
+L ++ +Q + + + +F K N R + L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--------VSRLQPYLKL---- 140
Query: 88 KKRKMKALIPQTVQLIY--FGALFILCGGSLLV-------------SGG----SFDGC-- 126
++ + L P LI G G + + + C
Sbjct: 141 -RQALLELRPAKNVLIDGVLG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 127 --SLVSFITSLVFMIEP--IQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA-VSL 181
+++ + L++ I+P + N + L L KSK + + L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSK--PYENCLLVL 250
Query: 182 DHINGDVK----F---CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGG-----GKS 229
++ + K F C I V D L+ ++L S KS
Sbjct: 251 LNVQ-NAKAWNAFNLSCKILLTTRFKQ--VTDFLSAATT--THISLDHHSMTLTPDEVKS 305
Query: 230 TLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLFSGTVAENIGYRDL 288
L K L + R L R V + + +++ + ++ + + D
Sbjct: 306 LLLKYL-------------------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 289 MTKIDMERVEHTARTA----NADEFVRTLPQGY--------NTHIGPRGSSLSGGQRQRL 336
++ +++ ++ E+ R + + + HI P L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEY-RKM---FDRLSVFPPSAHI-PT---------ILL 392
Query: 337 AIARALYQNSSV----LILDE--ATSALDSRSE----------LLVRQAVDRLLGHHTVL 380
++ ++ + +++++ S ++ + + L ++ ++ H +
Sbjct: 393 SL---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 381 V--------------------------IAHHLETVMMAKRVFLL 398
V I HHL+ + +R+ L
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 56/372 (15%), Positives = 108/372 (29%), Gaps = 120/372 (32%)
Query: 4 QMLVISP-VLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
++L +P LS+I+ + +A + + ++ +I S LN + PA
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESS--LNVLEPAEY-- 371
Query: 63 KANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTV------QLIYFGALFILCGGSL 116
F RL+ + A IP + +I + ++
Sbjct: 372 ---------RKMFDRLS------VFPP---SAHIPTILLSLIWFDVIKSDVMVVV----- 408
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLT-KFKSKVIEK 175
L + SLV KQ + + + + + K K+ +
Sbjct: 409 ---------NKLHKY--SLV---------------EKQPKESTISIPSIYLELKVKLENE 442
Query: 176 PD--AVSLDHINGDVKFCNISFKYADNMPLVLDQ-----LNLHIRAGETVALIGPSGGGK 228
+DH N F + D +P LDQ + H++ E
Sbjct: 443 YALHRSIVDHYNIPKTFDS-----DDLIPPYLDQYFYSHIGHHLKNIE-----------H 486
Query: 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288
L ++ +D ++ ++ RH T+ + Y+
Sbjct: 487 PERMTLFRMVF--------LDFRFLEQ-KI----RHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 289 MTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+ D R NA +F+ + N L R+A+
Sbjct: 534 ICDND----PKYERLVNAILDFLPKI--EENLICSKYTDLL------RIAL-----MAED 576
Query: 348 VLILDEATSALD 359
I +EA +
Sbjct: 577 EAIFEEAHKQVQ 588
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-08
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 326 SSLSGGQRQR------LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HT 378
+ LSGG+R LA++ L S+LILDE T LD + ++R L
Sbjct: 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 379 VLVIAHHLETVMMAKRV 395
V++++H E A V
Sbjct: 116 VILVSHDEELKDAADHV 132
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 9e-08
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG-----SSLSGGQRQ----- 334
+ ++ E ++ VR + G + LSGG+R
Sbjct: 201 ALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLA 260
Query: 335 -RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVMMA 392
RLA++ L S+LILDE T LD + ++R L V++++H E A
Sbjct: 261 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320
Query: 393 KRVFLLD 399
V +
Sbjct: 321 DHVIRIS 327
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-07
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 31/199 (15%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSL 261
+L +NL + GE AL+GP+G GKSTL K+L Y G IL+D ++ + D
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE- 76
Query: 262 RRHVGL------------VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE- 308
R GL V+ I F + R++ +V+ + DE
Sbjct: 77 RARKGLFLAFQYPVEVPGVT--IANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES 134
Query: 309 FV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
++ R L +G+ SGG+++R I + L + +LDE S LD + +V
Sbjct: 135 YLSRYLNEGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA 183
Query: 368 QAVDRLLG-HHTVLVIAHH 385
+ V+ + G + LVI H+
Sbjct: 184 RGVNAMRGPNFGALVITHY 202
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 9e-07
Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 63/217 (29%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHD--------- 252
+L L+L + GE A++GP+G GKSTL+ L Y+ G + D
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 253 -----------------VQNIR-----LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290
V N L+++R + G + D F + E +
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK------IA 148
Query: 291 KIDMERVEHTARTANADEFV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349
+ M ++ + R++ G+ SGG+++R I + +
Sbjct: 149 LLKMP-----------EDLLTRSVNVGF-----------SGGEKKRNDILQMAVLEPELC 186
Query: 350 ILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHH 385
ILDE+ S LD + +V V+ L + +++ H+
Sbjct: 187 ILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 326 SSLSGGQRQRLAIARAL-------YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT 378
+LSGG++ +A++ L +ILDE T LD + + ++
Sbjct: 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ 338
Query: 379 VLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413
+++I HH E +A + + K +++ + G
Sbjct: 339 MIIITHHRELEDVADVIINVK--KDGNVSKVKING 371
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 426 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.98 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.95 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.95 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.94 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.94 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.93 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.93 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.92 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.92 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.91 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.91 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.9 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.9 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.89 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.88 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.88 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.88 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.87 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.86 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.86 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.86 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.86 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.85 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.85 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.84 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.84 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.84 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.84 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.83 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.83 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.82 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.82 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.81 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.81 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.8 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.8 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.8 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.8 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.8 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.8 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.79 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.79 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.79 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.78 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.78 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.76 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.76 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.75 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.75 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.74 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.71 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.69 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.68 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.68 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.68 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.65 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.62 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.62 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.61 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.61 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.59 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.57 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.54 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.54 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.53 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.52 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.51 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.5 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.5 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.5 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.47 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.46 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.46 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.46 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.38 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.37 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.37 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.25 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.23 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.23 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.23 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.21 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.2 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.2 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.2 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.12 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.11 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.1 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 99.1 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.09 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.08 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 99.04 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.03 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.03 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.01 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.97 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.84 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.84 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.83 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.83 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.72 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.72 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.69 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.67 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.67 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.65 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.64 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.64 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.64 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.63 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.61 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.59 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.57 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.54 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.54 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.42 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.41 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.39 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.37 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.33 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.29 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.26 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.24 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.23 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.21 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.21 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.18 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.09 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.07 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.01 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.99 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.94 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.93 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.92 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.89 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.88 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.86 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.85 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.84 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.83 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.8 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.78 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.77 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.74 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.73 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.71 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.69 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.67 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.61 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.61 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.59 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.59 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.58 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.57 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.53 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.52 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.51 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.49 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.47 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.44 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.42 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.42 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.38 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.36 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.3 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.3 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.29 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.29 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.27 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.26 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.25 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.22 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.18 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.17 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.17 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.11 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.1 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.09 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.99 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.98 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.98 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.95 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.95 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.95 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.9 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.89 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.87 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.84 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.83 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.83 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.82 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.81 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.79 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.78 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.77 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.76 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.75 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.74 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.73 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.72 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.69 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.67 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.65 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.65 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.64 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.64 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.64 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.63 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.61 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.59 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.58 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.53 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.5 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.47 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.47 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.45 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.45 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.44 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.41 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.4 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.4 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.36 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.31 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.3 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.3 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.25 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.22 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.22 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.18 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.17 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.15 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.15 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.11 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.09 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.06 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.05 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.04 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 96.03 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.02 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.02 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.01 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.96 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.95 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.95 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.95 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.94 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.93 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.93 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.93 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.92 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.92 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.91 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.91 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.91 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.9 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.9 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.89 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.88 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.87 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.87 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.86 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.86 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.84 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.84 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.84 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.83 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.83 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.82 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.81 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.81 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.8 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.8 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.8 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.79 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.79 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.75 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.75 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.74 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.73 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.73 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.7 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.67 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.66 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.65 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.65 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.64 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.64 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.63 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.63 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.63 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.61 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.58 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.56 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.54 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.53 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.52 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.51 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.51 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.49 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.48 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.47 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.44 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.42 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.4 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.4 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.39 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.39 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.38 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.38 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.37 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.37 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.37 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.37 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.36 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.35 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.34 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.33 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.31 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.31 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.31 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.31 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.29 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.29 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.29 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.29 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.29 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.28 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.27 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.25 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.25 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.24 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.24 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.24 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 95.23 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.22 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.22 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.21 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.21 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.21 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.2 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.2 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.18 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.18 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.16 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.14 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.14 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.14 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.14 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.13 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.12 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.12 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.11 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.11 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.1 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.1 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.09 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.08 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.07 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.07 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.07 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.06 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.06 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.05 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.05 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.05 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.03 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.02 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.99 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.99 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.96 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.94 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.93 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.91 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.91 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.9 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.9 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.87 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.85 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.84 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.83 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 94.79 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.78 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.76 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.75 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 94.74 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.74 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.72 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.72 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.72 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.71 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.69 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 94.64 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.6 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.54 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.54 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.53 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.51 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.46 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.45 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.41 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.38 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.35 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.33 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.32 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.16 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.1 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.03 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.01 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.0 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 93.94 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.92 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 93.85 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 93.66 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 93.48 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 93.48 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.46 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 93.43 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.41 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.33 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 93.29 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.4 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 93.27 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 93.25 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.2 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.17 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.12 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 93.11 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-80 Score=710.60 Aligned_cols=412 Identities=32% Similarity=0.433 Sum_probs=372.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||+|+.+.++|.+..++.
T Consensus 229 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 308 (1321)
T 4f4c_A 229 IVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA 308 (1321)
T ss_dssp HHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+......++ ....++++++|++++..|.+++|.+++++.++..+..|+..++..+..++++.++++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 388 (1321)
T 4f4c_A 309 KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASG 388 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655554443333332 3445667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCC-CCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 162 LFDLTKFKSKVIEKPDA-VSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++.+++..+.... ....+..+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 389 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp HHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred HHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 99999877654332221 1222345789999999999854 357999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++++.+++|++|+||+|+|+||++||+|||.||.+ +.+++++.++|+.++++++++.+|+|+||
T Consensus 469 ~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T 546 (1321)
T 4f4c_A 469 DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNT 546 (1321)
T ss_dssp CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSS
T ss_pred ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999975 45789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+||+|.+|||||||||+||||+++||+|||||||||+||+++|+.+.+.|.++.+++|+|+||||+++++.||+|+||+
T Consensus 547 ~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCK 626 (1321)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEE
T ss_pred EecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+|+|+|+|++|.++.
T Consensus 627 ~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp TTEEEEEECHHHHHTTT
T ss_pred CCeeeccCCHHHHHHhh
Confidence 99999999999887653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-80 Score=655.22 Aligned_cols=411 Identities=27% Similarity=0.470 Sum_probs=367.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..
T Consensus 157 ~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 236 (587)
T 3qf4_A 157 MAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLR 236 (587)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+.............. .....++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri 316 (587)
T 3qf4_A 237 RSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRV 316 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444433333322 233456677889999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.++++.+++..+.......++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|+
T Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 317 LEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp HHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred HHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 99998766543222221222335689999999999765567999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|+|.+||+|+++++.+++|++++||||+|.+|++||+||+.++.+ ..+++++.++++.++++++++.+|+|++|.++
T Consensus 397 ~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 397 RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 9999999999999999999999999999999999999999999864 34678899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
++|.+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||||++|++|+
T Consensus 475 ~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 554 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGK 554 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTE
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
+++.|+++++.++.
T Consensus 555 i~~~g~~~el~~~~ 568 (587)
T 3qf4_A 555 VAGFGTHKELLEHC 568 (587)
T ss_dssp EEEEECHHHHHHHC
T ss_pred EEEECCHHHHHhCC
Confidence 99999998887543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-80 Score=655.96 Aligned_cols=412 Identities=34% Similarity=0.543 Sum_probs=369.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||+|+.+.++|++..++.
T Consensus 154 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 233 (578)
T 4a82_A 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233 (578)
T ss_dssp HHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...........+ .+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++++..+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 313 (578)
T 4a82_A 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665555444433332 3345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.....+.+...+.|+++||+|+|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|
T Consensus 314 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 314 VFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp HHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred HHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 99999877654332222222233568999999999986556799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++.+.+++|++++||||+|.+|++||+||+.++.+ ..+++++.++++.++++++++.+|+|++|.+
T Consensus 394 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~ 471 (578)
T 4a82_A 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEV 471 (578)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhh
Confidence 99999999999999999999999999999999999999999999864 3467889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||||++|++|
T Consensus 472 ~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 551 (578)
T 4a82_A 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551 (578)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETT
T ss_pred ccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.+++
T Consensus 552 ~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 552 HIVETGTHRELIAKQ 566 (578)
T ss_dssp EEEEEECHHHHHHTT
T ss_pred EEEEECCHHHHHhCC
Confidence 999999999887654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-78 Score=642.67 Aligned_cols=411 Identities=35% Similarity=0.541 Sum_probs=366.4
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b5x_A 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSM 237 (582)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45678999999999999999998888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...+......++ .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b5x_A 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555544443333 3335566778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+. ..+.++..+.|+++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 318 LFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred HHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876543211 1111222457999999999975334699999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+.+.+..++|++++||||+|.+|++|++||+.++.. .+.++++++++++.++++++++++|+|+||.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 99999999999999988999999999999999999999999999752 23567889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||||++|++|
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 554 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.+++
T Consensus 555 ~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 555 EIIERGRHADLLAQD 569 (582)
T ss_pred EEEEECCHHHHHhCC
Confidence 999999998887654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-78 Score=643.03 Aligned_cols=410 Identities=34% Similarity=0.514 Sum_probs=365.0
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b60_A 158 IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 237 (582)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 35678999999999999999999888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...+......++ ....++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b60_A 238 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555544443333 2334556778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+. ..+.++..+.|+++||+|+|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 318 LFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp HHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred HHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 99999876553221 1111223457999999999975334699999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+++.+.+..++|++++||||+|.+|++|++||+.++.. .+.++++++++++.++++++++++|+|++|.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 396 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999752 23567889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||||++|++|
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 554 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999899999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
++++.|+++++.++
T Consensus 555 ~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 555 IIVERGTHSELLAQ 568 (582)
T ss_dssp EEEEEECHHHHHHH
T ss_pred EEEEecCHHHHHHc
Confidence 99999999887654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-80 Score=707.89 Aligned_cols=415 Identities=30% Similarity=0.411 Sum_probs=357.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|.+++++++++|+++++..+..++..+...+..+..++....+.|+++|+++||+|+.|+.+.++|.+..+..
T Consensus 889 ~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~ 968 (1321)
T 4f4c_A 889 GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIP 968 (1321)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred eeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHH
Confidence 35678999999999999999988888777777777777778888899999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSL--VSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l--~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
.+...+......+...+.. ...+..++++++|++++..+..+.+.+ ++++.+......|+..+...+..+..+..+.
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 1048 (1321)
T 4f4c_A 969 HKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAG 1048 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655554444333332 223445566777888888877665544 3334444444567888888999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+|+.++++.+++..+.....+.++..+.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+
T Consensus 1049 ~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1049 GIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp HHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred HHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 99999998776654333333334456789999999999864 34699999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
|+|++|+|.+||+|+++++.+++|++|++|||||.||++||||||+||....+.++++++++++.+++++++..+|+|||
T Consensus 1129 ~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~Gld 1208 (1321)
T 4f4c_A 1129 YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208 (1321)
T ss_dssp SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTC
T ss_pred ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCC
Confidence 99999999999999999999999999999999999999999999999864456789999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
|.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||
T Consensus 1209 T~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vl 1288 (1321)
T 4f4c_A 1209 TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288 (1321)
T ss_dssp SEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEE
T ss_pred CEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eCCEEEEeccccccccCcc
Q 014366 399 DNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~~~~ 417 (426)
++|+|+|+|+|++|.++++
T Consensus 1289 d~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A 1289 SNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp SSSSEEEEECHHHHHHCC-
T ss_pred ECCEEEEECCHHHHHhCCc
Confidence 9999999999998887643
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-79 Score=650.07 Aligned_cols=410 Identities=30% Similarity=0.507 Sum_probs=367.1
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||+|+.+.++|.+..++.
T Consensus 170 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 249 (598)
T 3qf4_B 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESL 249 (598)
T ss_dssp HHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+...+..++ .+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++++..+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 329 (598)
T 3qf4_B 250 RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER 329 (598)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544444433332 3345666778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++.... ...+.++..+.|+++||+|+|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|
T Consensus 330 i~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 330 IFEILDLEEEKDDP-DAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp HHHHTTSCCCCCCS-SCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred HHHHHcCCCCCCCC-CCCCCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 99999877654221 111222335689999999999754 4699999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+.+++.+++|++++||||+|.+|++||+||+.++.+ ..++++++++++.++++++++.+|+|++|.+
T Consensus 408 ~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 408 DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999864 3456788999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|
T Consensus 486 ~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 565 (598)
T 3qf4_B 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDG 565 (598)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.++.
T Consensus 566 ~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 566 EIVEMGKHDELIQKR 580 (598)
T ss_dssp SEEECSCHHHHHHTT
T ss_pred EEEEECCHHHHHhCC
Confidence 999999998887653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-75 Score=660.64 Aligned_cols=411 Identities=32% Similarity=0.446 Sum_probs=366.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 201 ~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~ 280 (1284)
T 3g5u_A 201 IIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA 280 (1284)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+......+ .+...++++++|++++..|.+++|.+++++.++.....|+..+...+..++.+..+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 360 (1284)
T 3g5u_A 281 KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYE 360 (1284)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555444444333332 23445677888999999999999999988888888889999999999999999999999
Q ss_pred HHHhhcCcccccCCC-CCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 162 LFDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 162 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++.+++..+.. .........+.|+++||+|+|+++ ..++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 361 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 361 VFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp HHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred HHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 999998766543211 111122335789999999999854 346999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.+ +.++++++++++.+++++++..+|+|+||
T Consensus 441 ~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 518 (1284)
T 3g5u_A 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDT 518 (1284)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999864 35688999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+++..+++|+|+||||++++..||+|++|+
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~ 598 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD 598 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECS
T ss_pred cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCEEEEeccccccccC
Q 014366 400 NGKLEELNRSTLLGSN 415 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~ 415 (426)
+|+++|.|+++++.++
T Consensus 599 ~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 599 GGVIVEQGNHDELMRE 614 (1284)
T ss_dssp SSCCCCEECHHHHHHT
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999999887654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-71 Score=633.53 Aligned_cols=414 Identities=28% Similarity=0.442 Sum_probs=364.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|.+++++++++|+++++..+..++.++...+..+..++....+.|.++|+++||+|+.|+.+.++|.+..+..
T Consensus 844 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~ 923 (1284)
T 3g5u_A 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923 (1284)
T ss_dssp HHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35678899999999999999999888888888888888888899999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..........+.. ..++..++++++|++++..|.++.+.++.++.+......|+..+...+..++++..+++|
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 1003 (1284)
T 3g5u_A 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH 1003 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554444333333 234446677788999999999999999999988888888999988888889999999999
Q ss_pred HHHhhcCcccccCCCC-CCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 162 LFDLTKFKSKVIEKPD-AVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++.+++...... ........+.|+++||+|+|+++ ..++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 1004 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp HHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred HHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 9999987665432211 11122235689999999999854 246999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++.+.+++|++++||||||.+|++||+||+.++.+....++++++++++.++++++++++|+||||
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGC
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999998765456788999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|++..+++|+|+||||++++..||||++|+
T Consensus 1164 ~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~ 1243 (1284)
T 3g5u_A 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQ 1243 (1284)
T ss_dssp BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEE
T ss_pred ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998878899999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+++|.|+|+++.+++
T Consensus 1244 ~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp TBEEEEEECHHHHHHSC
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999998887654
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-67 Score=512.98 Aligned_cols=265 Identities=37% Similarity=0.641 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCc
Q 014366 148 AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGG 227 (426)
Q Consensus 148 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsG 227 (426)
++..++.+..+++|++++++.+++..+.....+.....+.|+++||+|+|+++ .++|+|+||+|++||++||+||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCch
Confidence 45677888899999999987665433222222222234679999999999754 46999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchH
Q 014366 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307 (426)
Q Consensus 228 KSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~ 307 (426)
||||+++|+|+++|++|+|.++|+++..++..++|++|+||||++.+|++||+|||.++.. ..++++++++++.+++.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~--~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST--TCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc--cCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999864 34578899999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 308 ~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
+++..+|+|++|.++++|.+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887899999999999
Q ss_pred HHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 388 TVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 388 ~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+..||||++|++|+|++.|+++++.++
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9989999999999999999999887654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=445.88 Aligned_cols=228 Identities=43% Similarity=0.703 Sum_probs=211.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.+|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46999999999943224699999999999999999999999999999999999999999999999999888877888899
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+||||++.+|+.|++||+.++.. ..+.+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999998899999998743 2356778889999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998768899999999998888999999999999999999877655
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=436.13 Aligned_cols=227 Identities=38% Similarity=0.639 Sum_probs=208.7
Q ss_pred ccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
..|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999997532 3699999999999999999999999999999999999987 8999999999987777788899
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++||||++.+|+.|++||+.++.. ..+.+++.++++.+++.+++..+|+|+++.+++++.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 999999999998899999998643 234667788899999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998778899999999998888999999999999999998877543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=439.59 Aligned_cols=226 Identities=38% Similarity=0.647 Sum_probs=207.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++++|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999532 469999999999999999999999999999999999999999999999999987766677889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
|||++.+|+.|++||+.++.. ...+.+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 81 v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999998999999998622 1345677889999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+||||||||+||+.+++.+.+.|+++.+++|+|++||+++.+..||||++|++|++++.|+++++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999999999988778899999999998888999999999999999998877543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=437.74 Aligned_cols=229 Identities=38% Similarity=0.570 Sum_probs=207.2
Q ss_pred ccEEEEeEEEEeCC-CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
+.|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 12469999999999999999999999999999999999999999999999999987777778889
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||||++.+|+.||+||+.++..... ..+++.++++..++.++++.+|.|+++.+++++.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccccccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999999998899999998753211 2255667777888999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++||||||||+||+.+++.+.+.|+++.+ ++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999853 7899999999999888999999999999999998877543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=457.55 Aligned_cols=235 Identities=23% Similarity=0.431 Sum_probs=217.3
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+...+|+.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 45799999999996444579999999999999999999999999999999999998 99999999999999998888999
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++||||++.+|+.||+||+.+.. ....++++++++.+++.++++++|.++++.+++.+.+|||||||||+|||||++
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCcccCccCHHHHhhhcc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998543 235678899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcchhhhcC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~~l~~~~ 423 (426)
+|++||||||||+||+.++..+.+.|+++..++|+|+|||+++.+..||||++|++|+|++.|+++++++++...+.++
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va~ 251 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAG 251 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHHh
Confidence 9999999999999999999999999998777889999999998888899999999999999999999988776555443
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-56 Score=440.31 Aligned_cols=220 Identities=31% Similarity=0.439 Sum_probs=188.8
Q ss_pred ccEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---
Q 014366 186 GDVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS--- 260 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~--- 260 (426)
..|+++||+++|+.+ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 469999999999753 235899999999999999999999999999999999999999999999999999887654
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+|++||||||++.+|+. ||+||+.++......+. +++.++++.+++ ....+..+.+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----------GDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-----------GGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHH
Confidence 47889999999999865 99999987532222222 234444554444 444455678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
++|||||+.+|++||||||||+||+.++..+++.|+++. .+.|||+|||+++.+. .||||++|++|++++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999885 3789999999999986 7999999999999999999888
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
+.++
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 7664
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-55 Score=411.45 Aligned_cols=214 Identities=24% Similarity=0.397 Sum_probs=193.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999974335799999999999999999999999999999999999999999999998 49
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+|+||++.+|+.|++||+.++.. ....+..+.++.+++.++++.+|.+.++.+++++.+||||||||++|||||+++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCCcccCCCHHHHhhccCC---cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999998999999998643 223445667788899999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|++||||||||+||+.+++.+.+.+ +++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999974 555557899999999998888999999999999999998877654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=415.94 Aligned_cols=215 Identities=31% Similarity=0.477 Sum_probs=179.3
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~---- 261 (426)
|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 359999999999999999999999999999999999999999999999999998887653
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCC---CCCCHH----HHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLM---TKIDME----RVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQ 332 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~---~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGq 332 (426)
|+++|||||++.+|+. ||+||+.++... ...+.+ ++.++++.+ |+... .+..+.+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 3469999999999876 999999763211 112222 223333333 33332 356778999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHHhcCEEEEEeCCEEEEecccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~ 410 (426)
|||++|||||+.+|++||||||||+||+.++..+.+.|+++. + ++|+|+|||+++.+..||||++|++|++++.++++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999885 3 78999999999977789999999999999999877
Q ss_pred ccc
Q 014366 411 LLG 413 (426)
Q Consensus 411 ~l~ 413 (426)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 654
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=424.60 Aligned_cols=219 Identities=27% Similarity=0.432 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~ 264 (426)
.|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999754 359999999999999999999999999999999999999999999999999852 233467889
Q ss_pred eEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
||||||+| .+|..||+||+.++......+.+ ++.++++.++ ++...+..+.+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG-----------IEHLKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCCcccCCHHHHHHHHH
Confidence 99999998 46778999999875322222332 3344444444 4444455678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++||||||||+||+.+++.+.+.|+++. + ++|||+|||+++.+. .||||++|++|++++.|+++++.++
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999999875 3 789999999999886 7999999999999999999887765
Q ss_pred cc
Q 014366 416 HD 417 (426)
Q Consensus 416 ~~ 417 (426)
+.
T Consensus 235 ~~ 236 (275)
T 3gfo_A 235 KE 236 (275)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-55 Score=411.82 Aligned_cols=213 Identities=26% Similarity=0.433 Sum_probs=191.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+|+|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 4899999999974334699999999999999999999999999999999999999999999998 399
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
||||++.+++.|++||+.++... ..+...++.+.+++.+.+..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCC---CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCcCCCcCHHHHhhCcccc---CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999998888999999986532 223455677778888888889999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHH---HHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 347 SVLILDEATSALDSRSELLVRQAVD---RLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++||||||||+||+.+++.+.+.|. ++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 9999999999999999999999994 44457899999999998888999999999999999998877543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=428.70 Aligned_cols=221 Identities=28% Similarity=0.390 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC--CHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--RLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~--~~~~~r~~ 264 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+. .....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999975 3699999999999999999999999999999999999999999999999998321 22345678
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
||||||++.+|+. ||+||+.|+......+ .+++.++++.+++. ...+..+.+|||||||||+||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-----------ELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-----------GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 9999999999965 9999999875432222 23445555555544 444556689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+.+|++||||||||+||+.++..+.+.+.++. .+.|+|+|||+++.+. .||||++|++|++++.|+++++++++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998877653 4789999999999885 79999999999999999999888776
Q ss_pred chhh
Q 014366 417 DSLV 420 (426)
Q Consensus 417 ~~l~ 420 (426)
...+
T Consensus 231 ~~~~ 234 (359)
T 3fvq_A 231 ADLD 234 (359)
T ss_dssp SCHH
T ss_pred ccHH
Confidence 5443
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=432.05 Aligned_cols=220 Identities=30% Similarity=0.476 Sum_probs=188.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999975 3699999999999999999999999999999999999999999999999999877654 46799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.+++ +...++.+.+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----------AHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-----------GGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhHCCHHHHHHHHHHHH
Confidence 99999999975 99999988643222233 234444454444 444555678999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.++..+.+.|+++. + +.|+|+||||++.+. .||||++|++|++++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 999999999999999999999999999999884 3 789999999998875 7999999999999999999988876654
Q ss_pred hhh
Q 014366 419 LVS 421 (426)
Q Consensus 419 l~~ 421 (426)
.+.
T Consensus 228 ~~v 230 (381)
T 3rlf_A 228 RFV 230 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-54 Score=411.78 Aligned_cols=216 Identities=27% Similarity=0.362 Sum_probs=188.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999975 36999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCC--CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
|++|++.+ |+.||+||+.++.... ....+++.++++.+++.+ .......+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 4679999998764321 122345555666555433 334456799999999999999999
Q ss_pred C------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 344 Q------NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 344 ~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
. +|++|||||||||||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++++.+
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999998853 469999999999986 799999999999999999988775
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=404.16 Aligned_cols=220 Identities=23% Similarity=0.361 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++ ++.+
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 5899999999975 369999999999999999999999999999999999999999999999999987776554 4569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||||++.+|+. |++||+.++.... .+.++..+. +.+.++.++ |++...++++.+||||||||++|||||+.
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcC-CCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999876 9999998853111 111111111 122333332 34455666788999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+ ..|||+++|++|++++.|+++++.++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999885 578999999999877 47999999999999999998877654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-54 Score=410.46 Aligned_cols=217 Identities=32% Similarity=0.433 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 264 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 5999999999965 35999999999999999999999999999999999999999999999999985 3344566788
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCC-CCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRD-LMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++||||++.+|+. |++||+.++. .....+. +++.++++.++ ++...+..+.+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-----------LKDKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCChhhCCHHHHHHHHH
Confidence 9999999998876 9999998742 1112222 23334444444 4444556678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999999874 4789999999999986 79999999999999999998776543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=399.46 Aligned_cols=209 Identities=30% Similarity=0.366 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR- 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r- 262 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999975 36999999999999999999999999999999999999999999999999998776543 33
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++++||||++.+|+ .|++||+.++......+. +++.++++.+ |++.....++.+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 67999999999886 499999987421111121 2233333333 4455556677899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999999884 4789999999999887899999999999999885
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=407.79 Aligned_cols=217 Identities=31% Similarity=0.418 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----------C
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----------I 256 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----------~ 256 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4999999999975 359999999999999999999999999999999999999999999999999861 3
Q ss_pred CH---HHHhcceEEEecCCCCCcc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHhchHHH-HHhcCCCcccccCCCCC
Q 014366 257 RL---DSLRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEF-VRTLPQGYNTHIGPRGS 326 (426)
Q Consensus 257 ~~---~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~----~~~~~~~~~~~~l~~~-~~~lp~g~~t~~~~~g~ 326 (426)
+. ..+|++++||||++.+|+. ||+||+.++. .....+ .+++.++++.+++.++ .+ .++.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-----------KYPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-----------SCGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-----------CCcc
Confidence 33 3457789999999998876 9999998742 111122 2345556666666555 43 3557
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|||+|||+++.+. .||||++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 4789999999999986 79999999999999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
+.|+++++.+++
T Consensus 233 ~~g~~~~~~~~~ 244 (262)
T 1b0u_A 233 EEGDPEQVFGNP 244 (262)
T ss_dssp EEECHHHHHHSC
T ss_pred EeCCHHHHHhCc
Confidence 999988776543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=423.07 Aligned_cols=217 Identities=33% Similarity=0.509 Sum_probs=186.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++++|
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 4899999999965 3599999999999999999999999999999999999999999999999999876543 57899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.+++.++ ....+.+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-----------LDRKPTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999998643222222 345555555555444 444567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999998743 789999999999874 7999999999999999999988776544
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-53 Score=404.48 Aligned_cols=216 Identities=28% Similarity=0.387 Sum_probs=184.0
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+|++
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 356999999999964 369999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++||||++.+|+. |++||+.++......+. +++.++++.+++.+ ....++.+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-----------KIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-----------GGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999998876 99999987421111122 23444555554443 34445689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999885 4789999999999986 599999999999999999887643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=407.59 Aligned_cols=216 Identities=22% Similarity=0.309 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 3599999999999999999999999999999999999999999999999999876543 456789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCC--CC-----------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLM--TK-----------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~--~~-----------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+||||++.+|+ .|++||+.++... .. .+.++.. ..+.+.++.+ |++...++++.+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999999886 5999999875321 11 1111111 1122334443 5566667778899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|||++||+++.+. .||||++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999875 4789999999999885 7999999999999999998
Q ss_pred cc
Q 014366 410 TL 411 (426)
Q Consensus 410 ~~ 411 (426)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=422.01 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=185.7
Q ss_pred ccEEEEeEEEEe-CCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y-~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
..|+++|++++| ++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 469999999999 54 359999999999999999999999999999999999999999999999999976553 4678
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++||||++.+|+. ||+||+.|+......+ .+++.++++.+++.+ ..+..+.+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-----------YANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHH
Confidence 9999999999975 9999998753211222 233455555555444 44455689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++.+++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998753 789999999999875 79999999999999999998887665
Q ss_pred c
Q 014366 417 D 417 (426)
Q Consensus 417 ~ 417 (426)
.
T Consensus 238 ~ 238 (355)
T 1z47_A 238 G 238 (355)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-53 Score=422.37 Aligned_cols=219 Identities=30% Similarity=0.495 Sum_probs=181.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++++|
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999965 3599999999999999999999999999999999999999999999999999876543 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.+++. ......+.+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999999754322232 2344455555444 44455668999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999998743 689999999999874 7999999999999999999988776544
Q ss_pred hh
Q 014366 419 LV 420 (426)
Q Consensus 419 l~ 420 (426)
.+
T Consensus 236 ~~ 237 (372)
T 1v43_A 236 VF 237 (372)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-53 Score=423.11 Aligned_cols=217 Identities=35% Similarity=0.508 Sum_probs=185.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. +++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876643 56899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.++ ++......+.+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----------IDKLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT-----------CTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchHhhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999988532112222 23444444444 4444555668999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998743 789999999998874 7999999999999999999988776543
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=423.16 Aligned_cols=218 Identities=32% Similarity=0.455 Sum_probs=185.3
Q ss_pred cEEEEeEEEEeCCCCCC--cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHH
Q 014366 187 DVKFCNISFKYADNMPL--VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~ 261 (426)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 4899999999964 36 999999999999999999999999999999999999999999999999986521 2234
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++++|||||++.+|+. ||+||+.|+......+. +++.++++.+++.+ .....+.+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHH
Confidence 6789999999999975 99999998643322232 33445555555444 44455689999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|++++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998743 789999999999875 79999999999999999998887
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
+++.
T Consensus 230 ~~p~ 233 (353)
T 1oxx_K 230 DNPV 233 (353)
T ss_dssp HSCS
T ss_pred hCcc
Confidence 6653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-53 Score=403.62 Aligned_cols=214 Identities=27% Similarity=0.404 Sum_probs=184.2
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.|+++||+|+|+.+. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .+|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 388999999997222 3599999999999999999999999999999999999999999999999998642 6678
Q ss_pred ceEEEecCC--CCCcccHHHHHcCCCCC---CCCCHHHHHHHHHHhchH--HHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 264 HVGLVSQDI--TLFSGTVAENIGYRDLM---TKIDMERVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 264 ~i~~v~Q~~--~lf~~ti~eni~~~~~~---~~~~~~~~~~~~~~~~l~--~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+++||||++ .+++.|++||+.++... .....+++.++++.+++. ++.++ ...+||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHH
Confidence 899999996 45677999999876321 112345677788887776 65544 3479999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999884 5789999999999886 699999999999999998876654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-53 Score=421.38 Aligned_cols=216 Identities=32% Similarity=0.487 Sum_probs=185.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+.+. .+++++|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 4 9999999999999999999999999999999999999999999999999976543 4678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|||++.+|+. ||+||+.|+..... ...+++.++++.+++.++ .+.++.+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999975 99999987532101 112555666666655444 4445679999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcchh
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~l 419 (426)
|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++.+. .||||++|++|++++.|+++++++++...
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~ 222 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTT
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccH
Confidence 99999999999999999999999999874 3789999999998874 79999999999999999999888765443
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-53 Score=421.89 Aligned_cols=218 Identities=26% Similarity=0.450 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN------IRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~------~~~~~ 260 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 4899999999965 359999999999999999999999999999999999999999999999999865 443
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.+++||||||++.+|+ .||+||+.|+......+. +++.++++.+++. ......+.+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-----------ELLNRKPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-----------GGTTCCGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCCcccCCHHHHHH
Confidence 3578999999999996 499999988532112222 2344455555444 44455668999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
++|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 789999999999885 7999999999999999999988
Q ss_pred ccCcchh
Q 014366 413 GSNHDSL 419 (426)
Q Consensus 413 ~~~~~~l 419 (426)
++++...
T Consensus 228 ~~~p~~~ 234 (372)
T 1g29_1 228 YDKPANT 234 (372)
T ss_dssp HHSCSBH
T ss_pred HhCcccH
Confidence 7765443
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-53 Score=397.42 Aligned_cols=210 Identities=27% Similarity=0.395 Sum_probs=178.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..+++++|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999987533 34678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|||++.+|+. |++||+.++......+ .+++.++++.+ |++......+.+||||||||++|||||+.
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999876 9999999864322111 12233333333 44445566678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998742 789999999999875 7999999999999999998877544
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-53 Score=406.57 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 264 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999975 36999999999999999999999999999999999999999999999999987 6667778889
Q ss_pred eEEEecCCCC-Ccc--cHHHHHcCCCCC-----CCCCH---HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 265 VGLVSQDITL-FSG--TVAENIGYRDLM-----TKIDM---ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 265 i~~v~Q~~~l-f~~--ti~eni~~~~~~-----~~~~~---~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
++||||++.+ |.. |++||+.++... ..... +++.++++.+ |++...+.++.+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHH
Confidence 9999999865 443 999999886311 00111 2233334443 444455667789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceE--EEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV--LVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|| |+|||+++.+. .||+|++|++|++++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998753 7899 99999999884 7999999999999999998
Q ss_pred cccccC
Q 014366 410 TLLGSN 415 (426)
Q Consensus 410 ~~l~~~ 415 (426)
+++.++
T Consensus 248 ~~~~~~ 253 (279)
T 2ihy_A 248 EDILTS 253 (279)
T ss_dssp HHHCSH
T ss_pred HHHhcc
Confidence 877654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=391.81 Aligned_cols=209 Identities=25% Similarity=0.331 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+..+++++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4899999986 4899999999999999999999999999999999999999 99999999998777778888999
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+|+. |++||+.++... ..+.+++.++++.+++.++ .+.++.+||||||||++|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD-KTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS-TTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhcc-CCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998865 999999986421 1235556666666665443 3445689999999999999999999
Q ss_pred CC-------EEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEecccccccc
Q 014366 346 SS-------VLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 346 p~-------illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+ +|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+ ..||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999884 578999999999998 5899999999999999999887765
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=399.67 Aligned_cols=209 Identities=25% Similarity=0.424 Sum_probs=174.2
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.|+++||+|.+ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 3469999999864 3599999999999999999999999999999999999999999999988 4
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++|+||++.+|+.|++||+. +.. .......++++..++.++++.+|.++++.+++++.+||||||||++|||||++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc---cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 99999999999899999998 432 23344566778889999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|++||||||||+||+.+++.+.+.+ +++.+++|||++||+++.+..||++++|++|++++.|+++++..
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999999999874 45555789999999999888899999999999999999887654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=392.88 Aligned_cols=212 Identities=24% Similarity=0.340 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 263 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4899999999975 3699999999999999999999999999999999999 89999999999999987776554 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCC---CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC-CChHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDL---MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS-LSGGQRQ 334 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~---~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~-LSgGqkQ 334 (426)
.++|+||++.+|+. |++||+.++.. ..... .+++.++++.+++. .........+ |||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD----------ESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC----------GGGGGSBTTCC----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC----------hhHhcCCcccCCCHHHHH
Confidence 69999999999875 99999976421 00011 12233344444331 1233344567 9999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-h-cCEEEEEeCCEEEEecccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-M-AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~-~D~i~vl~~G~i~e~g~~~ 410 (426)
|++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|||+|||+++.+. . |||+++|++|++++.|+++
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999999999985 4789999999999887 4 5999999999999999876
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=386.61 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999722 3699999999999999999999999999999999999999999998 256799
Q ss_pred EEecCCCCC-cccHHHHHcCCCCCC-C----CC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLF-SGTVAENIGYRDLMT-K----ID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~~~-~----~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||||++.+| ..|++||+.++.... . .. .+++.++++.+++. ...+.++.+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-----------HLAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-----------HHhcCChhhCCHHHHHHHH
Confidence 999999987 569999998853110 0 11 23344555555443 3444567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++||||||||+||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999999885 3 789999999999884 799999999999 99999887764
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=390.30 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 263 (426)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+ +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999964 3699999999999999999999999999999999999 57999999999999987766554 44
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCC-------CCCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCC-CCChHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRD-------LMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGS-SLSGGQR 333 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~-~LSgGqk 333 (426)
.++||||++.+|+. |++||+.++. .....+.++..+ .+.+.++.+ |+++ ....... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHH
Confidence 69999999998876 9999986531 000112211111 122333333 4543 3344454 5999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHh--cCEEEEEeCCEEEEecccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMM--AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~D~i~vl~~G~i~e~g~~~ 410 (426)
||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|||++||+++.+.. |||+++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999885 36899999999998864 8999999999999999987
Q ss_pred ccc
Q 014366 411 LLG 413 (426)
Q Consensus 411 ~l~ 413 (426)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-51 Score=390.52 Aligned_cols=208 Identities=19% Similarity=0.321 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
|+++|++++|++. .+++|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998654 23 6789
Q ss_pred E-EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 G-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~-~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+ |+||++.+ ..|++||+.++........+++.++++..+ ++ ...+.++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALK-----------LGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTT-----------CCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcC-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 889999998743211223455555555544 44 4455667899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcC-EEEEEeCCEEEEecccccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAK-RVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D-~i~vl~~G~i~e~g~~~~l~~ 414 (426)
.+|++|||||||++||+.+++.+.+.|+++.+ |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998754 9999999999875 799 999999999999999887764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=370.39 Aligned_cols=197 Identities=19% Similarity=0.336 Sum_probs=166.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++.+
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 46999999999964 5999999999999999999999999999999999999999999999999875 357889
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC--CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||||++.+|+. |++||+.++.... ....+++.++++.+ |++.. ++++.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 9999998742110 11234455555444 44455 567789999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||+++++ .|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999875 3689999999999886 57887644 5665
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=353.38 Aligned_cols=201 Identities=26% Similarity=0.368 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +..++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5899999999964 3699999999999999999999999999999999999999999975 23699
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.. +..||.||+...........+.+.++++.. |+......+..+||||||||++|||||+.+
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 456999988542000000122233333332 444455667789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEecccccccc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLLGS 414 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l~~ 414 (426)
|++|||||||++||+.++..+.+.|+++. .+.|||+|||+++.+. .||||++|++ |+++..|+|+++.+
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999874 3789999999999986 7999999996 78888999987664
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=355.46 Aligned_cols=202 Identities=25% Similarity=0.363 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+++
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5899999999964 3699999999999999999999999999999999999999999975 23699
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+ ++.||.||+...........+.+.++++.. |++.....+..+||||||||++|||||+.+
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 466999998642000000122233333333 344445566789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l~~~ 415 (426)
|++|||||||++||+.++..+.+.|+++. .+.|+|+||||++.+. .||||++|++ |++...|+|+++.+.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999999999999999999999874 4789999999999986 7999999986 888889999877653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=345.44 Aligned_cols=201 Identities=24% Similarity=0.350 Sum_probs=164.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..++++|++++|++ ..+++.||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 35899999999975 368888999999999999999999999999999999999999998764 358
Q ss_pred EEEecCCCC-CcccHHHHHcCCCCCC-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDITL-FSGTVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~l-f~~ti~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+|+||+... +..|++||+.+..... ......+.++++..++ ....+..+.+|||||||||+|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL-----------HRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG-----------GGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999865 4679999997532111 1122333444444444 44455667899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEecccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLL 412 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l 412 (426)
.+|++|||||||++||+.++..+.+.|+++. .+.|||+||||++.+. .||||++|++ |.....+++..+
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999874 4789999999999986 6999999986 556666666543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=358.64 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=151.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++|+|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 59999999999753356999999999999999999999999999999999999999999999862 1356
Q ss_pred EEecCCCC-----CcccHHH------------------------------------------------------------
Q 014366 267 LVSQDITL-----FSGTVAE------------------------------------------------------------ 281 (426)
Q Consensus 267 ~v~Q~~~l-----f~~ti~e------------------------------------------------------------ 281 (426)
|++|++.. ...|+++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 66655421 1123333
Q ss_pred ------HHcCCCC---------------------------------------CCCCCHHHHHHHHHHhchHHHHHhcCCC
Q 014366 282 ------NIGYRDL---------------------------------------MTKIDMERVEHTARTANADEFVRTLPQG 316 (426)
Q Consensus 282 ------ni~~~~~---------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~lp~g 316 (426)
|+.++.. ......+++.+.++..++.+..
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~------ 893 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI------ 893 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH------
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh------
Confidence 3322110 0001123334444444443211
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEE
Q 014366 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRV 395 (426)
Q Consensus 317 ~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i 395 (426)
....++.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+|||+++.+. .|||+
T Consensus 894 ---~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 894 ---VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp ---HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred ---hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 023356799999999999999999999999999999999999999999999876 469999999999985 79999
Q ss_pred EEEeCCEEEEecc
Q 014366 396 FLLDNGKLEELNR 408 (426)
Q Consensus 396 ~vl~~G~i~e~g~ 408 (426)
++|++|++++.|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=342.80 Aligned_cols=201 Identities=23% Similarity=0.355 Sum_probs=164.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAG-----ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~G-----e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
++++|+|++. ..+++++||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 5678899754 35899999999999 8899999999999999999999999999962 11 3469
Q ss_pred EEEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|+||+... |+.|+++|+.........+.+...++++..++ .........+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999764 57799999854221111233444445554443 344555678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEeccccccccCc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLLGSNH 416 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l~~~~ 416 (426)
+|++|||||||++||+.++..+.+.|+++. .+.|+|+||||++.+. .||||++|++ |+++..|+|+++.+..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 999999999999999999999999999874 3789999999999986 6999999996 8999999998887653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=343.41 Aligned_cols=197 Identities=25% Similarity=0.346 Sum_probs=157.2
Q ss_pred cEEE--------EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE---------EEc
Q 014366 187 DVKF--------CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVD 249 (426)
Q Consensus 187 ~i~~--------~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I---------~~~ 249 (426)
.|++ +|++++|++. ..+|+++| ++++||+++|+||||||||||+|+|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 3788 8999999753 24899999 999999999999999999999999999999999996 345
Q ss_pred CEeCCCCCHH--HHhcceEEEecCCC----CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 250 DHDVQNIRLD--SLRRHVGLVSQDIT----LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 250 g~~i~~~~~~--~~r~~i~~v~Q~~~----lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
|.++...... ..+..+++++|... ++.+|++||+..... .+++.++++..++.+. .+.
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~-----~~~~~~~L~~lgL~~~-----------~~~ 224 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE-----VGKFEEVVKELELENV-----------LDR 224 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC-----SSCHHHHHHHTTCTTG-----------GGS
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH-----HHHHHHHHHHcCCCch-----------hCC
Confidence 6544321111 11345889998754 334599999864211 1334556666655443 344
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
...+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. ++.|+|+||||++.+. .||||++|+++
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 567999999999999999999999999999999999999999999999885 4789999999999886 69999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-39 Score=344.30 Aligned_cols=207 Identities=22% Similarity=0.353 Sum_probs=139.5
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhcCCCCC-------ccEEEEcCEeC
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLA---------------------KLLLRLYDPL-------SGCILVDDHDV 253 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl---------------------~ll~g~~~p~-------~G~I~~~g~~i 253 (426)
..+|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3599999999999999999999999999998 8999999998 45566666554
Q ss_pred CCCCHHHHhcceEEEecCCCC-------------------C-cccHHHHHcCCCCCCCCC-HHH-----HHHHHHHhchH
Q 014366 254 QNIRLDSLRRHVGLVSQDITL-------------------F-SGTVAENIGYRDLMTKID-MER-----VEHTARTANAD 307 (426)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~l-------------------f-~~ti~eni~~~~~~~~~~-~~~-----~~~~~~~~~l~ 307 (426)
.. ..++.+++|+|.+.+ | ..|++||+.+........ ..+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 124456666665432 2 358999997742111000 000 11111221
Q ss_pred HHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEec
Q 014366 308 EFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIA 383 (426)
Q Consensus 308 ~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 383 (426)
+.++.+ |++.. .+....+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|+++. ++.|||+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 223333 45433 466788999999999999999999998 999999999999999999999999885 478999999
Q ss_pred cChHHHHhcCEEEEE------eCCEEEEeccccccccCcc
Q 014366 384 HHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 384 H~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~~ 417 (426)
|+++.+..||||++| ++|++++.|+++++.+++.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999988889999999 8999999999988776543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=339.05 Aligned_cols=193 Identities=27% Similarity=0.364 Sum_probs=152.7
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE---------EEcCEeCCCCCHHH-
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVDDHDVQNIRLDS- 260 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I---------~~~g~~i~~~~~~~- 260 (426)
+||+|+|++. ..+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++.......
T Consensus 25 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 5999999753 24899999 999999999999999999999999999999999995 34554432211111
Q ss_pred -HhcceEEEecCCCCC----cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 -LRRHVGLVSQDITLF----SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 -~r~~i~~v~Q~~~lf----~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.+..+++++|+...+ .+|+.||+.... ..+++.++++.+++ +........+||||||||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~~~~~~~~l~~lgl-----------~~~~~~~~~~LSgGekQR 166 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGKLEEVVKALEL-----------ENVLEREIQHLSGGELQR 166 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----SSSCHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHH
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----HHHHHHHHHHHcCC-----------ChhhhCChhhCCHHHHHH
Confidence 124588999976543 358999885321 11234555555554 333445568999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
|+|||||+.+|++||||||||+||+.+.+.+.+.|+++. .+.|+|+||||++.+. .||||++|++|
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999875 4789999999999886 69999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=335.99 Aligned_cols=196 Identities=24% Similarity=0.336 Sum_probs=162.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..+...|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 46888899999975 359999999999999999999999999999999995 544 4543211 1247
Q ss_pred EEEecCC-CCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhch-HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDI-TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~-~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+|++|++ .++ ..|+.||+.+.. ... .+++.++++..++ .+..++. ..+||||||||++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~--~~~-~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESG--VGT-KEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAV 563 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTC--SSC-HHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHHhh--cCH-HHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 8999986 455 459999997621 122 5677888888888 4555543 369999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eeccccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLLG 413 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l~ 413 (426)
+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999999999999999999988 5789999999999986 79999999999997 578776554
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=332.29 Aligned_cols=225 Identities=15% Similarity=0.187 Sum_probs=184.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC
Q 014366 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN 200 (426)
Q Consensus 121 g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~ 200 (426)
+..+-+.+.+|+.+..+ ..|+..++..+..++++..+.+|+.++++.+++...... ......+.|+++||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHHH--
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEcC--
Confidence 44566788888887666 489999999999999999999999999986554321111 1011123589999999997
Q ss_pred CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHH
Q 014366 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (426)
Q Consensus 201 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (426)
.++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.+|++
T Consensus 113 -~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~ 170 (305)
T 2v9p_A 113 -INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLA 170 (305)
T ss_dssp -HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGT
T ss_pred -hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHH
Confidence 35999999999999999999999999999999999999 8988 3578999999999999
Q ss_pred H-HHcCCCCCCCCCHHHHHHHHHHhchHHHHHh-cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC
Q 014366 281 E-NIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (426)
Q Consensus 281 e-ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L 358 (426)
| |+.++. +.++ ++.++++. +|+|++ |.+|||||||| |||++++|+||| ||+|
T Consensus 171 ~~ni~~~~---~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 171 DTRAALVD---DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp TCSCEEEE---EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHhhccCc---cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 8 998853 2222 34566777 888887 68999999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccc
Q 014366 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|+.+++.+.. +|||++.+..||+| +|++|++++.|+++++
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 9999988752 39999988899999 9999999999998876
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=330.72 Aligned_cols=201 Identities=25% Similarity=0.391 Sum_probs=147.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh----------------------cCCCCCccEEEEcCEeCCCCCHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL----------------------RLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~----------------------g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
..+|+||||+|++||++||+||||||||||+++|+ |+.+ .+|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998754 3333 356899999887643311
Q ss_pred HHh-----------------------------------------cceEEEecCCCCC-----------------------
Q 014366 260 SLR-----------------------------------------RHVGLVSQDITLF----------------------- 275 (426)
Q Consensus 260 ~~r-----------------------------------------~~i~~v~Q~~~lf----------------------- 275 (426)
... ...|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 100 0123333332221
Q ss_pred ----------cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 276 ----------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 276 ----------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
..|++||+.+..... ..++..+ .+..+ |+. ...++.+.+|||||||||+|||||+.
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~--~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIP--KIKRKLE---------TLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCH--HHHHHHH---------HHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHS
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhh--hHHHHHH---------HHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhh
Confidence 347888887643210 1112222 22232 333 24567789999999999999999998
Q ss_pred CC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eCCEEEEecccccccc
Q 014366 345 NS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGS 414 (426)
Q Consensus 345 ~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~ 414 (426)
+| ++|||||||++||+.+...+.+.|+++. ++.|||+||||++.+..||||++| ++|++++.|+++++.+
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 87 5999999999999999999999999885 478999999999998889999999 8999999999988865
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
..
T Consensus 641 ~~ 642 (670)
T 3ux8_A 641 VK 642 (670)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=321.79 Aligned_cols=195 Identities=25% Similarity=0.351 Sum_probs=144.6
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCHHH
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRLDS 260 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-----------~~~g~~i~~~~~~~ 260 (426)
|++++|+.+. ..+++++ ++++||++||+||||||||||+|+|+|+++|++|+| .+.|.++..+....
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4688997643 4677777 689999999999999999999999999999999998 23333222111112
Q ss_pred HhcceE--EEecCCCCC----c---ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 261 LRRHVG--LVSQDITLF----S---GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 261 ~r~~i~--~v~Q~~~lf----~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+.+.+. +.+|....+ . .++.+++.... ....+++.++++.+++.+ ..+....+||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG 225 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---EKSPEDVKRYIKILQLEN-----------VLKRDIEKLSGG 225 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---CSCHHHHHHHHHHHTCTG-----------GGGSCTTTCCHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---hhHHHHHHHHHHHcCCcc-----------hhCCChHHCCHH
Confidence 223332 333332211 1 15566654321 123455666666655544 344566899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|||+||||++.+. .||||++|++|.
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999999864 789999999999986 699999998764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=322.13 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=147.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCH
Q 014366 191 CNISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRL 258 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~-~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-----------~~~g~~i~~~~~ 258 (426)
++++.+|+.+ .++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3567899765 3455555554 899999999999999999999999999999998 567765532211
Q ss_pred HHHh------cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 259 DSLR------RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 259 ~~~r------~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
.... ..+.+++|.+.++.+|+++++..... .+++.++++.+++.+ ..+....+|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-----~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe 143 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE-----RGKKDEVKELLNMTN-----------LWNKDANILSGGG 143 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC-----SSCHHHHHHHTTCGG-----------GTTSBGGGCCHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh-----HHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 1111 12334444555667789888743211 123445566555543 3344567999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
|||++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|||+||||++.+. .||+|++|++|.
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999999877899999999999886 799999998753
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=318.08 Aligned_cols=202 Identities=25% Similarity=0.406 Sum_probs=148.6
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHH---------HHHhcCCCCCc------c------EEEEcCEeCCCCCH---
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLA---------KLLLRLYDPLS------G------CILVDDHDVQNIRL--- 258 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl---------~ll~g~~~p~~------G------~I~~~g~~i~~~~~--- 258 (426)
..|+||||+|++|++++|+|+||||||||+ +++.+...+.. | .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 44444443332 2 35555555432110
Q ss_pred H-------H-------------------------------HhcceEEEecCCCCCcc-----------------------
Q 014366 259 D-------S-------------------------------LRRHVGLVSQDITLFSG----------------------- 277 (426)
Q Consensus 259 ~-------~-------------------------------~r~~i~~v~Q~~~lf~~----------------------- 277 (426)
. . -.+..|+++++..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0 01235788887766542
Q ss_pred ----------cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 278 ----------TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 278 ----------ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|+.|++.+.... ...++.. +.+..+ |+. ..+++++.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~--~~~~~~~---------~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI--PSIKRTL---------QVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC--HHHHHHH---------HHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc--hhHHHHH---------HHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCC
Confidence 344444332210 0111222 233333 333 3468889999999999999999999876
Q ss_pred ---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eCCEEEEeccccccccCc
Q 014366 347 ---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 347 ---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
++|||||||+|||+.+++.+++.|+++. +++|||+||||++.++.||+|++| ++|+|++.|+|+++.+++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 7999999999999999999999999885 578999999999999899999999 899999999999988765
Q ss_pred c
Q 014366 417 D 417 (426)
Q Consensus 417 ~ 417 (426)
.
T Consensus 905 ~ 905 (916)
T 3pih_A 905 H 905 (916)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=288.58 Aligned_cols=203 Identities=19% Similarity=0.278 Sum_probs=148.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------CCcc
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--------------------------------------PLSG 244 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--------------------------------------p~~G 244 (426)
..++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 999999999999999999977664 4578
Q ss_pred EEEEcCEeCCCCCHHHHhcc-eEEEecCCCCCcccHHHHHcCCCCCCCCCHH-------HHHHHH---------------
Q 014366 245 CILVDDHDVQNIRLDSLRRH-VGLVSQDITLFSGTVAENIGYRDLMTKIDME-------RVEHTA--------------- 301 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~-------~~~~~~--------------- 301 (426)
++++||++++..+..++.+. +++++|++.++-.+..++..+.......... ...++.
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999876556666665 8999999887655444333221110000000 000000
Q ss_pred ----------------H-----------------HhchHHHHHhc--CC----------------Cccc---ccCCCCCC
Q 014366 302 ----------------R-----------------TANADEFVRTL--PQ----------------GYNT---HIGPRGSS 327 (426)
Q Consensus 302 ----------------~-----------------~~~l~~~~~~l--p~----------------g~~t---~~~~~g~~ 327 (426)
. ...+.+.+..+ |. |++. .+..++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0 00111222222 11 1111 23333333
Q ss_pred --------CChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEE
Q 014366 328 --------LSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 328 --------LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~v 397 (426)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.++.|||+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 7999999999999999999 999999999999999999999999998778899999999988889999999
Q ss_pred E----eCCEEEEe
Q 014366 398 L----DNGKLEEL 406 (426)
Q Consensus 398 l----~~G~i~e~ 406 (426)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=305.41 Aligned_cols=215 Identities=23% Similarity=0.388 Sum_probs=157.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHH-HhcCC-------CC----------------
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKL-LLRLY-------DP---------------- 241 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~l-l~g~~-------~p---------------- 241 (426)
..|+++|+++ ..|+|+||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999975 26999999999999999999999999999996 66543 23
Q ss_pred --Ccc-------EEEEcCEeCCCCCH----------HHHhcce---------EEEec----------------------C
Q 014366 242 --LSG-------CILVDDHDVQNIRL----------DSLRRHV---------GLVSQ----------------------D 271 (426)
Q Consensus 242 --~~G-------~I~~~g~~i~~~~~----------~~~r~~i---------~~v~Q----------------------~ 271 (426)
.+| .|.++|.++...+. ..+|+.+ +|.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988754321 1222222 22211 1
Q ss_pred CCCC------------------------c-ccHHHHHcCCCC-----CCCCCHHHHHHHHHHhchHHHHHhcCCCccc-c
Q 014366 272 ITLF------------------------S-GTVAENIGYRDL-----MTKIDMERVEHTARTANADEFVRTLPQGYNT-H 320 (426)
Q Consensus 272 ~~lf------------------------~-~ti~eni~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~ 320 (426)
..++ . .||.||+.+... ... . ... ....+.++.+ |+.. .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~-~~~------~~~~~~L~~~--gL~~~~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-E-SAI------FRALDTLREV--GLGYLR 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-S-HHH------HHHHHHHHHT--TCTTSB
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-c-hHH------HHHHHHHHHc--CCCccc
Confidence 1111 1 255666533110 000 0 001 1123445554 5554 4
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEE
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~---p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~ 396 (426)
++....+|||||||||+|||+|+++ |++|||||||+|||+.+.+.+.+.|+++. ++.|||+|||+++.+..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 6788899999999999999999996 79999999999999999999999999885 5789999999999998899999
Q ss_pred EE------eCCEEEEeccccccccCcc
Q 014366 397 LL------DNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 397 vl------~~G~i~e~g~~~~l~~~~~ 417 (426)
+| ++|++++.|+++++.++..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 7999999999998876643
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=305.09 Aligned_cols=210 Identities=24% Similarity=0.359 Sum_probs=155.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCC-------CCCcc-------------E
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLY-------DPLSG-------------C 245 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~-------~p~~G-------------~ 245 (426)
.++++|++. ..|+||||+|++||+++|+|+||||||||+++|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 488888852 3799999999999999999999999999999854 221 12233 4
Q ss_pred EEEcCEeCCCCC---HH-------HH---------hcceEEEecCCCCC-------------------------------
Q 014366 246 ILVDDHDVQNIR---LD-------SL---------RRHVGLVSQDITLF------------------------------- 275 (426)
Q Consensus 246 I~~~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~lf------------------------------- 275 (426)
|.+++.++.... +. .. .+.+||++|...+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888874321 11 11 12357887753221
Q ss_pred ------------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCCh
Q 014366 276 ------------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSG 330 (426)
Q Consensus 276 ------------------------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSg 330 (426)
..|+.||+.+... . ....+ ..+.++.+ |+.. .++....+|||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 1134444433211 0 01111 12344444 5665 67888999999
Q ss_pred HHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eC
Q 014366 331 GQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DN 400 (426)
Q Consensus 331 GqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~ 400 (426)
||||||+|||+|+++| ++|||||||+|||+.+.+.+.+.|+++. ++.|||+|||+++.+..||||++| ++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCC
Confidence 9999999999999875 9999999999999999999999999885 578999999999998889999999 78
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|++++.|+++++.++.
T Consensus 929 G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEVK 944 (972)
T ss_dssp CSEEEEESHHHHHTCT
T ss_pred CEEEEecCHHHHHhCc
Confidence 9999999998887654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=318.02 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-E-EEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-C-ILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~-I~~~g~~i~~~~~~~~r~~ 264 (426)
.++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++|| + .++.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 467777777773 68999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred eEEEecCCCCCc----ccHHHHHcCCCCC-CCC-CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFS----GTVAENIGYRDLM-TKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~----~ti~eni~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|+||++.+|+ .|++||+ ++... ... ..+++..+++.+ |++.... +.+||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999986543 4899999 65421 110 111111222222 4444433 67999999999999
Q ss_pred HHH--hcCCCCE----EEeec-cCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH------HH-HhcCE-----EEEEe
Q 014366 339 ARA--LYQNSSV----LILDE-ATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE------TV-MMAKR-----VFLLD 399 (426)
Q Consensus 339 ARa--l~~~p~i----lllDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~------~~-~~~D~-----i~vl~ 399 (426)
||| |+.+|++ ||||| ||++||+. .+.+.+.++++ +.|+|+|||+.+ .+ ..||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 77777777664 578999999987 55 47999 99999
Q ss_pred -CCEEEEeccccccc
Q 014366 400 -NGKLEELNRSTLLG 413 (426)
Q Consensus 400 -~G~i~e~g~~~~l~ 413 (426)
+|+++ .|+++++.
T Consensus 324 k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 324 KLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCTTCC-CCCHHHHH
T ss_pred CCCcEE-ECCHHHHh
Confidence 99999 88887663
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=255.85 Aligned_cols=197 Identities=19% Similarity=0.247 Sum_probs=139.8
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC----------------------------------------------
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---------------------------------------------- 239 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~---------------------------------------------- 239 (426)
+++++++.+| +++|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998543
Q ss_pred ----CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccHHHHHcCCCCCC-CC------------CHHHHHHHH
Q 014366 240 ----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMT-KI------------DMERVEHTA 301 (426)
Q Consensus 240 ----~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~-~~------------~~~~~~~~~ 301 (426)
.+.+|.+++||.+++..+...+...+++.||+..++ .+++.+|+....... .. ..+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578999999875444455566788889988766 679999986532100 00 001111111
Q ss_pred HHh------------ch-HHHHHhcCCCccccc------CCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCC
Q 014366 302 RTA------------NA-DEFVRTLPQGYNTHI------GPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSAL 358 (426)
Q Consensus 302 ~~~------------~l-~~~~~~lp~g~~t~~------~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~L 358 (426)
... .+ .+....++.|+++.+ ...+.+||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 100 00 001123444665432 3346799999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEE--EEEeCCEE
Q 014366 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV--FLLDNGKL 403 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i--~vl~~G~i 403 (426)
|+.+.+.+.+.++++.++.|+|++||+++....||++ ++|++|.-
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999986678999999998877889987 88888854
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-32 Score=251.86 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=102.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +...+++.++|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 589985 89999999999999999999999999 999999943 33321 2224577899999987 555
Q ss_pred H-cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 283 I-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 283 i-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+ .+..+. .+.+........+.+.++. |+ |||||++|||||+.+|++|||||||++
T Consensus 79 l~~~~~~~----~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 79 IDPYLRPL----HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp -CTTTHHH----HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred HHHHHHHH----HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 5 332100 0000000000112233322 21 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 362 SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 362 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
++..+.+.|+++.+++|+| +||+++.+. +....++|..
T Consensus 135 ~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 135 TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8888999998874468899 999988664 3445667754
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=242.24 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhc------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCE
Q 014366 322 GPRGSSLSGGQRQRLAIARALY------QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~------~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~ 394 (426)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3466789999999999999999 7999999999999999999999999999885 47899999999998878999
Q ss_pred EEEEeCCEEEE
Q 014366 395 VFLLDNGKLEE 405 (426)
Q Consensus 395 i~vl~~G~i~e 405 (426)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-29 Score=221.80 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=107.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCC--CCcccHHHHHc
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFSGTVAENIG 284 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~ti~eni~ 284 (426)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.++ ++++|++. .+.+++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 21112 122333 67778763 22233333321
Q ss_pred CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH---
Q 014366 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR--- 361 (426)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~--- 361 (426)
... ...+..|+.+.++.. ...|||||||++||||++.+|++++|||||++||+.
T Consensus 64 --------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 --------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp --------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred --------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 000 011122555544433 456999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEE
Q 014366 362 -------------SELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 362 -------------~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i 395 (426)
..+.+.+.++++. ++.|+|++||+++.+..++++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4477888876663 478999999999999877765
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-32 Score=266.39 Aligned_cols=205 Identities=15% Similarity=0.137 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC-CCCCccEE---------E
Q 014366 122 SFDGCSLVSFITSLVFMIEPIQGVGK-AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDVK---------F 190 (426)
Q Consensus 122 ~l~~g~l~~~~~~~~~~~~p~~~l~~-~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~i~---------~ 190 (426)
.++.+.+.+++.++..+..| .+.. ....+..+..+.+|+..+++.|... ........ ....+.++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68889998888877665554 2322 2222333334456776666433211 10000000 01112344 5
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEec
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q 270 (426)
++++| | .++++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.+++++
T Consensus 152 ~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~- 223 (330)
T 2pt7_A 152 NLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF- 223 (330)
T ss_dssp TTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC-
T ss_pred Cchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe-
Confidence 56666 6 2489999999999999999999999999999999999999999999998652 22222344454443
Q ss_pred CCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 014366 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (426)
Q Consensus 271 ~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ill 350 (426)
| |||+||++|||||..+|++++
T Consensus 224 ---------------------------------------------g-------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 224 ---------------------------------------------G-------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp ---------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred ---------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEE
Confidence 0 899999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHcCC-ceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 351 LDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
|||||+. ++.+.|+.+..+ .|+|+++|+.+....|||+++|.+|+
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999982 345667666555 47999999999778999999999885
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-28 Score=220.75 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=109.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~ 296 (426)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~--~~---- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK--FF---- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--TC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--cC----
Confidence 689999999999999999999985 556776543332124567899999987 3334431 100 00
Q ss_pred HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH-----hcCCCCEEEeec--cCCCCCHHHHHHHHHH
Q 014366 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDE--ATSALDSRSELLVRQA 369 (426)
Q Consensus 297 ~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa-----l~~~p~illlDE--pts~LD~~~~~~i~~~ 369 (426)
+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.
T Consensus 65 -----------------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 65 -----------------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp -----------------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred -----------------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 0 0134566778999999999999996 999999999999 9999999999999998
Q ss_pred HHHHcCCceEEEecc---ChHHHH-hcCEEEEEeCCEEEEe
Q 014366 370 VDRLLGHHTVLVIAH---HLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 370 l~~~~~~~tvi~itH---~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
+++ .+.|+|++|| +.+.+. .||| .+|++.+.
T Consensus 126 l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 126 MHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp HTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred Hhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 876 3567888885 777775 6888 56777663
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-30 Score=241.51 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=115.1
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcceEEEecCCCCCcc-c-H
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLVSQDITLFSG-T-V 279 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-t-i 279 (426)
..|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|+||++.+|+. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3799999999999999999999999999999999999 6 99999 877654322 2346789999999887753 2 1
Q ss_pred HHHHc---CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH-----HHHhcCCCCEEEe
Q 014366 280 AENIG---YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI-----ARALYQNSSVLIL 351 (426)
Q Consensus 280 ~eni~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i-----ARal~~~p~illl 351 (426)
.+++. +.......+.++++++++... ...++ .+|||||+||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22322 111111122344444444321 11222 5799999999999 8999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHcCC--------ceEEEeccChHHH-HhcCEEE
Q 014366 352 DEATSALDSRSELLVRQAVDRLLGH--------HTVLVIAHHLETV-MMAKRVF 396 (426)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~~~--------~tvi~itH~~~~~-~~~D~i~ 396 (426)
||||+++|.+++..+.+.+.+..++ .+.|+++|+++.+ ..+|+++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999998766433 3455555655443 2344443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-29 Score=251.33 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=134.8
Q ss_pred CcceeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 014366 203 LVLDQLNLHIRAGE--------------------TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 203 ~~l~~isl~i~~Ge--------------------~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
.+|+++||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+.. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 2
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH--HHHHHHHHH
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIAR 340 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG--qkQRl~iAR 340 (426)
.++++|++.....|+.||+.++.. ..++.+.++..++.+. +.. .. |||| ||||++|||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~-----~~~~~~~L~~~~L~~~--------~~~----~~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST-----NFPPDTYLEKMKFYEY--------DFF----II-ISATRFKKNDIDIAK 169 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS-----SCCHHHHHHHTTGGGC--------SEE----EE-EESSCCCHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch-----HHHHHHHHHHcCCCcc--------CCe----EE-eCCCCccHHHHHHHH
Confidence 278999975446699999876532 1234556666554321 111 12 9999 999999999
Q ss_pred HhcC----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc------C----CceEEEeccChHH--HH-hcCEEE-
Q 014366 341 ALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLL------G----HHTVLVIAHHLET--VM-MAKRVF- 396 (426)
Q Consensus 341 al~~----------~p~illlDEpts~LD~~~~~~i~~~l~~~~------~----~~tvi~itH~~~~--~~-~~D~i~- 396 (426)
|+.+ +|++++|||||++||+.+++++.+.++++. . ..++++.||.++. +. .||++.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 9999 999999999999999999999999988762 1 2568889999876 64 588874
Q ss_pred EEeCC
Q 014366 397 LLDNG 401 (426)
Q Consensus 397 vl~~G 401 (426)
.|.+|
T Consensus 250 ~Lpeg 254 (413)
T 1tq4_A 250 DLPIY 254 (413)
T ss_dssp HSCGG
T ss_pred hCccc
Confidence 34444
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-29 Score=254.35 Aligned_cols=195 Identities=16% Similarity=0.111 Sum_probs=154.7
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE---eCCCCC-----
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH---DVQNIR----- 257 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~---~i~~~~----- 257 (426)
..++++++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+++|++|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468899999999743 3599999 999999999999999999999999999999999999999998 554321
Q ss_pred HHHHhcceEEEecC-CCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 258 LDSLRRHVGLVSQD-ITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~-~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
...+++.++|++|+ ..++ ..|+.+|+.+.. +.... +...+ ...+ +...+||+|| ||
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a--------e~~~~-~~~~v-----------~~~l-d~l~~lS~g~-qr 265 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA--------EDFRD-RGQHV-----------LLIM-DSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH--------HHHHT-TTCEE-----------EEEE-ECHHHHHHHH-HH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH--------HHHHh-CCCCH-----------HHHH-HhHHHHHHHH-HH
Confidence 24577889999995 3344 459999986521 11000 00000 1111 1246899999 99
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-----Cc-----eEEEeccChHHHHhcCEEEEEeCCEEEE
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-----HH-----TVLVIAHHLETVMMAKRVFLLDNGKLEE 405 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~~~~~~~~D~i~vl~~G~i~e 405 (426)
++|| +.+|++ |+|||+.+...+.+.++++.+ ++ ||+++|||++ ...||++++|.+|+++.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999988754 43 9999999999 66899999999999999
Q ss_pred ecccccccc
Q 014366 406 LNRSTLLGS 414 (426)
Q Consensus 406 ~g~~~~l~~ 414 (426)
.|++.++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 998877654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-28 Score=221.07 Aligned_cols=170 Identities=16% Similarity=0.087 Sum_probs=113.8
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (426)
.++++| .+|++||+++|+||||||||||+++|+|+++. |.+++.....-.....++.++|+||++.+|+. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 457888 79999999999999999999999999999963 44443221111112235679999999988754 777
Q ss_pred HHHcCCC------CCCCCCHHHHHHH----------HHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 281 ENIGYRD------LMTKIDMERVEHT----------ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 281 eni~~~~------~~~~~~~~~~~~~----------~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|+.... .....+.++..+. ++..++.++.+..| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 7764210 0011223333322 33445555555544 3566 9999
Q ss_pred CCCEEEeeccCCCC----CHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe
Q 014366 345 NSSVLILDEATSAL----DSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 345 ~p~illlDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
+|++++|||||+++ |+..++++.+.++++. .+.|+|+|||+++.+. .||||++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7789999999998875 3689999999999885 799999985
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-27 Score=228.55 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=127.3
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcceEEEecCCC-CCcc
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFSG 277 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~~ 277 (426)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 34678889999999999999999999999999999999999999999876532 1233 357999999998 7754
Q ss_pred -cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeecc
Q 014366 278 -TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEA 354 (426)
Q Consensus 278 -ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEp 354 (426)
|++||+.++.. ...+ ...++.+ |+.........+|| |||++||||++.+|+ +|+|| |
T Consensus 170 ~~v~e~l~~~~~-~~~d----~~lldt~-----------gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 170 TVLSKAVKRGKE-EGYD----VVLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHHHHHHH-TTCS----EEEECCC-----------CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHHHHHHH-cCCc----chHHhcC-----------CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 99999965321 0100 0011112 22222222335688 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEecc---------ChHHHH-hcCEEEEEeCCEE
Q 014366 355 TSALDSRSELLVRQAVDRLLGHHTVLVIAH---------HLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~~~~~~-~~D~i~vl~~G~i 403 (426)
|++||+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.
T Consensus 230 tsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 230 NTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999998652 22322 13689999999 344443 5789999999975
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-27 Score=223.59 Aligned_cols=148 Identities=16% Similarity=0.230 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCC-CCH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-IDM 294 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~-~~~ 294 (426)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.++..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2345789999999998855 99999998754221 112
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
+.+.+.+. .++.+.++ .+||||||||+++|||++. +++||||+++||+... +.++++.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHH
Confidence 33333333 34444433 4899999999999999876 9999999999999873 3333343
Q ss_pred CCceEEEeccChHHH
Q 014366 375 GHHTVLVIAHHLETV 389 (426)
Q Consensus 375 ~~~tvi~itH~~~~~ 389 (426)
+..++|+|.|..+.+
T Consensus 139 ~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 139 KVVNIIPVIAKADTM 153 (270)
T ss_dssp TTSEEEEEETTGGGS
T ss_pred hcCcEEEEEeccccC
Confidence 337899998887644
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-28 Score=235.19 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=142.6
Q ss_pred HHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEE-----------------------E
Q 014366 156 EPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLH-----------------------I 212 (426)
Q Consensus 156 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~-----------------------i 212 (426)
+.++.++.+.+..+....+ ........+.|+++||++.|. ++++++++. +
T Consensus 15 r~~~~~l~~~~~~~~~~~~---~~~l~~~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEE---LVGLRGLGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR 87 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHH---HHTTCCTTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred HHHHHHHHhcCCCCCCHHH---HHhccCCCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence 4556666655544332111 111223345799999999994 467777764 8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC---
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM--- 289 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~--- 289 (426)
++|+++||+||||||||||+++|+|+++|+.|. +++++|+|++.+++.|++||+.+....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP 150 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998663 469999999999888999999763211
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH
Q 014366 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369 (426)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~ 369 (426)
...+.+.+.+. ++.+..|.. ......|||||+||+++|||++.+|+|||||||++.+|+.. ..
T Consensus 151 ~~~d~~~~~~~---------L~~l~~~~~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~ 213 (312)
T 3aez_A 151 ESYNRRALMRF---------VTSVKSGSD---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LM 213 (312)
T ss_dssp GGBCHHHHHHH---------HHHHHTTCS---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CC
T ss_pred hHHHHHHHHHH---------HHHhCCCcc---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HH
Confidence 11222333333 333322332 12346899999999999999999999999999999998622 11
Q ss_pred HHHHcCCceEEEeccChHHHH--hcCEEEEEeCCE
Q 014366 370 VDRLLGHHTVLVIAHHLETVM--MAKRVFLLDNGK 402 (426)
Q Consensus 370 l~~~~~~~tvi~itH~~~~~~--~~D~i~vl~~G~ 402 (426)
+.+.. ..+|+|+|+.+... .++|.+.+.+|+
T Consensus 214 l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 214 VSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp GGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 22222 25688899887653 577877776664
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-24 Score=210.36 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=76.3
Q ss_pred CC-CCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCE
Q 014366 325 GS-SLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 325 g~-~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~ 394 (426)
.. .||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.++. .|+|++||. +. .||+
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--~~~~ 336 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--GAAL 336 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT--TCSE
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc--cCCE
Confidence 44 69999999999999999 8999999999999999999999999998874 799999994 44 8999
Q ss_pred EEEEeCCEEEEecccccc
Q 014366 395 VFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 395 i~vl~~G~i~e~g~~~~l 412 (426)
+++|++|++++.|+++++
T Consensus 337 i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEETTEEEECCCTTTS
T ss_pred EEEEECCEEEecCCHHHH
Confidence 999999999999998876
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-26 Score=224.70 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=128.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcceEEEecCCC-CCc-c
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFS-G 277 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 277 (426)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578889999999999999999999999999999999999999999875432 1223 457999999998 775 4
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccC
Q 014366 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEAT 355 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpt 355 (426)
|++||+.++.. ...+. ..++.+ |+.........+|| |||++||||++.+|+ +|+|| ||
T Consensus 228 tv~e~l~~~~~-~~~d~----~lldt~-----------Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 287 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYDV----VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 287 (359)
T ss_dssp HHHHHHHHHHH-TTCSE----EEEECC-----------CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GG
T ss_pred hHHHHHHHHHh-CCCHH----HHHHhc-----------CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CC
Confidence 99999975321 01110 011112 22222222234688 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEecc---------ChHHHH-hcCEEEEEeCCEE
Q 014366 356 SALDSRSELLVRQAVDRLLGHHTVLVIAH---------HLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~~~~~~-~~D~i~vl~~G~i 403 (426)
+|+|+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.
T Consensus 288 tglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 288 TGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 999998663 22322 13689999999 344443 5789999999964
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-25 Score=218.58 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=146.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-------CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-------RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~-------~~ 258 (426)
..++.+++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+. ..
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358889999999743 3599999 99999999999999999999999999999999999999998652111 11
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~ 337 (426)
..+++.+.+++|... + ..+++..+.....+.++... .|.+.. +-+...+||+|| ||++
T Consensus 122 ~~~~~~v~~~~~~~~----~--------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P--------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHTTEEEEEECTTS----C--------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhceEEEEECCCC----C--------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 123334555554321 1 12333334444444454332 132211 113467899999 9999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--C-Cc-----eEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--G-HH-----TVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~-~~-----tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
+| +.+|++ |+|+|+.....+.+.++++. + +. ||+++||+++ -..||++++|.+|+|+..+++
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence 99 688887 99999999999999999875 2 56 8999999998 457999999999999999988
Q ss_pred ccccc
Q 014366 410 TLLGS 414 (426)
Q Consensus 410 ~~l~~ 414 (426)
+++..
T Consensus 251 ~~~~~ 255 (347)
T 2obl_A 251 AEENH 255 (347)
T ss_dssp HTTTC
T ss_pred HHcCC
Confidence 76653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-23 Score=215.66 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=72.5
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 325 GSSL-SGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 325 g~~L-SgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
..+| |||||||++||||++.+| ++|||||||+|||+.+...+.+.|+++.+++|||+|||+++.+..||++++|+++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 9999999999999999999999999987678999999999988899999999665
Q ss_pred E
Q 014366 402 K 402 (426)
Q Consensus 402 ~ 402 (426)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-23 Score=231.89 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=122.9
Q ss_pred ccEEEEe-----EEEEeCCCCCCcceeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 186 GDVKFCN-----ISFKYADNMPLVLDQLNLHIRA-------GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 186 ~~i~~~~-----v~~~y~~~~~~~l~~isl~i~~-------Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
..|+++| |++.|+++ ..+++|++|++++ |++++|+||||||||||+|++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4599999 99999533 4699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcceE-EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 254 QNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 254 ~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
..++| ||||++. ..|+.|||... .++.+.+.. +..++|+++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~r-----------------ig~~d~~~~-----------~~stf~~em 856 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTR-----------------LGASDRIMS-----------GESTFFVEL 856 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEE-----------------CC--------------------CHHHHHH
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHH-----------------cCCHHHHhh-----------chhhhHHHH
Confidence 23566 9999873 55777877321 011111111 124677777
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHH-HHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEE--Ee
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSE-LLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLE--EL 406 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~-~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~--e~ 406 (426)
++ +++|++++.+|+++||||||+|+|+... ..+.+.++.+. + ++++|++||+++.+. .||++.++ +|++. +.
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 65 9999999999999999999999999874 55677777764 3 789999999999986 69999887 58887 45
Q ss_pred cccc
Q 014366 407 NRST 410 (426)
Q Consensus 407 g~~~ 410 (426)
|.++
T Consensus 935 ~~~~ 938 (1022)
T 2o8b_B 935 NECE 938 (1022)
T ss_dssp ----
T ss_pred cCcc
Confidence 5443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-25 Score=231.43 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=126.2
Q ss_pred EeEEEEeCCCCCCcceeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 191 CNISFKYADNMPLVLDQLNL-HIRAGETVALIGPSGGGKSTLAKL--LLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl-~i~~Ge~~~ivG~sGsGKSTLl~l--l~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+++. +|+.+ .++|+++|| .+++|++++|+||||||||||+++ ++|+++|++|.|+++|.+. .......++.+||
T Consensus 16 ~~~~-~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 16 QAIA-KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGW 92 (525)
T ss_dssp SSCC-EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTC
T ss_pred cccc-cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCC
Confidence 3443 34433 469999999 999999999999999999999999 7899999999999999873 1222344577999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++... +|+.+...... ++..++++..++.+..++.+ ..||||| |+
T Consensus 93 ~~q~~~~~-----~~l~~~~~~~~---~~~~~~l~~~~l~~~~~~~~-----------~~LS~g~-------------~~ 140 (525)
T 1tf7_A 93 DLAKLVDE-----GKLFILDASPD---PEGQEVVGGFDLSALIERIN-----------YAIQKYR-------------AR 140 (525)
T ss_dssp CHHHHHHT-----TSEEEEECCCC---SSCCSCCSSHHHHHHHHHHH-----------HHHHHHT-------------CS
T ss_pred ChHHhhcc-----CcEEEEecCcc---cchhhhhcccCHHHHHHHHH-----------HHHHHcC-------------CC
Confidence 99987521 12211100000 00111233344444444433 4677774 78
Q ss_pred EEEeeccCCC-----CCHHHHHHHHHHHHHHc-CCceEEEeccChHHH---------Hh-cCEEEEEeC
Q 014366 348 VLILDEATSA-----LDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV---------MM-AKRVFLLDN 400 (426)
Q Consensus 348 illlDEpts~-----LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~---------~~-~D~i~vl~~ 400 (426)
+++|||||+. +|+..++.+.+.+++++ .+.|+|++||+++.+ .. ||+|++|++
T Consensus 141 ~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 141 RVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9999999984 68999999999998875 378999999999873 44 999999998
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=194.31 Aligned_cols=77 Identities=32% Similarity=0.374 Sum_probs=69.2
Q ss_pred CCCCCCChHHHH------HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEE
Q 014366 323 PRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 323 ~~g~~LSgGqkQ------Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i 395 (426)
.....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. ++.|+|+|||+.+....||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 356789999999 6788899999999999999999999999999999998874 467999999998776789999
Q ss_pred EEEe
Q 014366 396 FLLD 399 (426)
Q Consensus 396 ~vl~ 399 (426)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-24 Score=196.56 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=119.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~ 294 (426)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++ ..++++++|++|+. .++ ++|+..... ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~--~~~- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGL--EPP- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCC--CCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccc--cCC-
Confidence 78999999999999999999999999 999 99999887544 34688899999986 332 233321100 000
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH-HHHH---HhcCCCCEEEeec--cCCCCCHHHHHHHHH
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL-AIAR---ALYQNSSVLILDE--ATSALDSRSELLVRQ 368 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl-~iAR---al~~~p~illlDE--pts~LD~~~~~~i~~ 368 (426)
+...+..+++.+..+|+|||+++ ++++ |++.+|+++|+|| ||..+|....+.+.+
T Consensus 70 -------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~ 130 (189)
T 2i3b_A 70 -------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ 130 (189)
T ss_dssp -------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH
T ss_pred -------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH
Confidence 01123467888889999999998 5565 6899999999999 899999988777777
Q ss_pred HHHHHcCCceEEE----eccChHHHHhcCEEEEEeCCEEEEec
Q 014366 369 AVDRLLGHHTVLV----IAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 369 ~l~~~~~~~tvi~----itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
.+.+ .+++|+ ++||.+ ...+|+|..+++|+|.+..
T Consensus 131 ~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 131 TLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 7753 345553 449875 4567888888899998754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-23 Score=225.23 Aligned_cols=164 Identities=17% Similarity=0.244 Sum_probs=120.5
Q ss_pred HHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC----CC-CCHHHHHHHHHHhc
Q 014366 231 LAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM----TK-IDMERVEHTARTAN 305 (426)
Q Consensus 231 Ll~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~----~~-~~~~~~~~~~~~~~ 305 (426)
...|..+.++|..|+|.++|+++.++.. .|+.+|+.+.... .. .......+..+ .
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~ 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEIE--K 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--H
T ss_pred chhcccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--H
Confidence 4456667789999999999998754322 2334443321000 00 00111111111 1
Q ss_pred hHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEE
Q 014366 306 ADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLLG-HHTVLV 381 (426)
Q Consensus 306 l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~ 381 (426)
..+++..+ |++.. .+....+|||||||||+|||||+++|+ +|||||||++||+...+.+.+.|+++.+ ++|||+
T Consensus 444 ~~~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 444 RLEFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12344443 66543 577789999999999999999999887 9999999999999999999999999864 789999
Q ss_pred eccChHHHHhcCEEEEE------eCCEEEEeccccccccCc
Q 014366 382 IAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 382 itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
||||++.+..||+|++| ++|+++..|+++++.+++
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999889999999 899999999998876543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-23 Score=197.84 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=100.7
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653221 1112222221
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+-|++. ..| |++|||||..+|+++++|||| |++
T Consensus 79 --------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 --------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp --------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred --------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 001111 122 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 362 SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 362 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+...+.+ ....+.+|++++|+.+....|||+++|..
T Consensus 112 ~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 8655444 33457899999999987678898877643
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-22 Score=196.87 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=121.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+ .+..++++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999988 77665433 3455565555555554322 2233
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH-HHHHHHHHHhcCCCCEEEeeccCC---C
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ-RQRLAIARALYQNSSVLILDEATS---A 357 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq-kQRl~iARal~~~p~illlDEpts---~ 357 (426)
++..+. .+.++..+.. .+++...+ + .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~----~~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 97 SLKREI----IENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHHH----HHHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred ccccCC----CCHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 432211 1111222211 11222211 1 1223335789999 67777 999999999999999999 4
Q ss_pred ---CCH-HHHHHHHHHHHHHcC--CceEEEeccCh--H--------------------HHH-hcCEEEEEeCCEE
Q 014366 358 ---LDS-RSELLVRQAVDRLLG--HHTVLVIAHHL--E--------------------TVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 358 ---LD~-~~~~~i~~~l~~~~~--~~tvi~itH~~--~--------------------~~~-~~D~i~vl~~G~i 403 (426)
+|. .....+.+.|+++.+ +.|||++||+. + .+. .||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 566778888887742 78999999995 4 454 7999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-22 Score=220.11 Aligned_cols=181 Identities=17% Similarity=0.220 Sum_probs=134.2
Q ss_pred CCCCcHHHHHHHHhc---------CCCCCccEEEEcCEeCCC---CCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCC
Q 014366 223 PSGGGKSTLAKLLLR---------LYDPLSGCILVDDHDVQN---IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (426)
Q Consensus 223 ~sGsGKSTLl~ll~g---------~~~p~~G~I~~~g~~i~~---~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~ 290 (426)
.+..||+|+.+.+.. -+.|..|+|.++|+++.+ ++..+....+.-++|++..+. + +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence 466799999988765 245678999999999877 455555444554555443221 1 1122211
Q ss_pred CCCHHHH-----HHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHH
Q 014366 291 KIDMERV-----EHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRS 362 (426)
Q Consensus 291 ~~~~~~~-----~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~ 362 (426)
...++ .++.++.. .+..+ |++.. ++....+|||||||||+||++|..+| ++|||||||++||+..
T Consensus 344 --~~~~i~~~i~~ei~~rl~---~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~ 416 (842)
T 2vf7_A 344 --EQAIALQRMAADLVKRLD---VLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD 416 (842)
T ss_dssp --SHHHHHHHHHHHHHHHHH---HHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred --hhHHHHHHHHHHHHHHHH---HHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence 11111 12222222 34444 66644 67888999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEEE------eCCEEEEeccccccccCc
Q 014366 363 ELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 363 ~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
.+.+.+.|+++++ +.|||+|+||++.+..||+|++| ++|+++..|+++++.+++
T Consensus 417 ~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 417 TEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhch
Confidence 9999999999864 78999999999988889999999 799999999998887653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=213.04 Aligned_cols=101 Identities=19% Similarity=0.329 Sum_probs=91.9
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh
Q 014366 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM 391 (426)
Q Consensus 316 g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 391 (426)
|++.. ++....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+++++ +.|||+|+||++.+..
T Consensus 492 GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 492 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 571 (972)
T ss_dssp TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHS
T ss_pred CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 66643 67888999999999999999999985 99999999999999999999999999864 7899999999999989
Q ss_pred cCEEEEE------eCCEEEEeccccccccCc
Q 014366 392 AKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 392 ~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
||+|++| ++|+++..|+++++.++.
T Consensus 572 ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~ 602 (972)
T 2r6f_A 572 ADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 602 (972)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECTTTTTTCT
T ss_pred CCEEEEeCCCccCCCCEEEEecCHHHHHhhh
Confidence 9999999 799999999998887653
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=212.80 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=118.8
Q ss_pred ccEEEEeEEEEeCC---CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------hcCCCCCccEEEEcCEeCC
Q 014366 186 GDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--------LRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 186 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll--------~g~~~p~~G~I~~~g~~i~ 254 (426)
+.|++++...-+-. +.+.+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 35777776443311 124689999999999999999999999999999999 56555543321
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 255 NIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 255 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
++.+. .+|. .+ ++.+.+ ...+|+|+++
T Consensus 702 ----------~~~~d---~i~~-------~i-------------------g~~d~l--------------~~~lStf~~e 728 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RV-------------------GAGDSQ--------------LKGVSTFMAE 728 (934)
T ss_dssp ----------EECCS---EEEE-------EC-------------------C-----------------------CHHHHH
T ss_pred ----------chHHH---HHHH-------hc-------------------CchhhH--------------HHhHhhhHHH
Confidence 11000 0110 01 111111 1357888888
Q ss_pred HHHHHHHh--cCCCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 335 RLAIARAL--YQNSSVLILDEATSALDSRSELLV-RQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 335 Rl~iARal--~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
+..+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|++||+.+....||++..+++|++...+++
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~ 808 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE 808 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEET
T ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecC
Confidence 88888888 999999999999999999988777 55555554 37899999999988889999999999999988776
Q ss_pred cccc
Q 014366 410 TLLG 413 (426)
Q Consensus 410 ~~l~ 413 (426)
+.+.
T Consensus 809 ~~l~ 812 (934)
T 3thx_A 809 ETLT 812 (934)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 6543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-21 Score=203.39 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=117.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~ 288 (426)
+..+++|++++|+||||||||||++.++|..+|+ |+ +.+.+++|++. .++.++....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~-- 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW-- 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc--
Confidence 3489999999999999999999999999998875 53 11456666652 2444554211
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH-----HH
Q 014366 289 MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-----SE 363 (426)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~-----~~ 363 (426)
..+.++ +.. .|+.......+.+|||||+||+++||++..+|+++|+| ||++||.. .+
T Consensus 332 --g~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 --GMDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp --SCCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred --CCCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 112111 111 13444455667899999999999999999999999999 99999999 89
Q ss_pred HHHHHHHHHHc-CCceEEEeccCh----------HHHH-hcCEEEEEeCCE
Q 014366 364 LLVRQAVDRLL-GHHTVLVIAHHL----------ETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 364 ~~i~~~l~~~~-~~~tvi~itH~~----------~~~~-~~D~i~vl~~G~ 402 (426)
+.+.+.++.++ .+.|+|++||+. ..+. .||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999888775 478999999998 6665 699999999886
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-21 Score=194.95 Aligned_cols=74 Identities=23% Similarity=0.242 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEEEe
Q 014366 326 SSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
..||||||||++||++|+ .+|+++||||||++||+.....+.+.|+++.+ +.++|++||+...+..||+++++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 359999999999999999 68999999999999999999999999998753 679999999988888899999986
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=212.30 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=113.3
Q ss_pred CccEEEEeEEEEeCC---CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCHHH
Q 014366 185 NGDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~g~~i~~~~~~~ 260 (426)
.+.|++++. ++|- +...+++|+||+ |++++|+||||||||||+|+++|+.. |+.|.+. . .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p-----a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P-----A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S-----S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e-----h
Confidence 346888887 4443 235799999999 99999999999999999999999874 6778652 1 1
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 261 LRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
.+..+++++| +|. .++.||+.. .+|+|++|++.+|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~-----------------------------------------g~S~~~~e~~~la 647 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG-----------------------------------------GKSTFMVEMEEVA 647 (765)
T ss_dssp SEEEECCCSE---EEEECCC-----------------------------------------------CCSHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh-----------------------------------------cccHHHHHHHHHH
Confidence 1456888877 454 366665421 3589999999999
Q ss_pred HHh--cCCCCEEEeecc---CCCCCHHHH-HHHHHHHHHHcCCceEEEeccChHHHHhc
Q 014366 340 RAL--YQNSSVLILDEA---TSALDSRSE-LLVRQAVDRLLGHHTVLVIAHHLETVMMA 392 (426)
Q Consensus 340 Ral--~~~p~illlDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 392 (426)
+++ +.+|+++||||| |++||+.+. ..+.+.|.+ .++|+|++||+.+....|
T Consensus 648 ~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 648 LILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999 999999999999 999999876 578888876 478999999999887655
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-24 Score=189.17 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=98.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCC---HHHHh-cceE----EEecCCCCCcccHHHHHc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIR---LDSLR-RHVG----LVSQDITLFSGTVAENIG 284 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~eni~ 284 (426)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987765 56777 4688 899998877 111
Q ss_pred CCCCCCCCCHHHHHHHHHHhchHHHHHh-cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEE-------EeeccCC
Q 014366 285 YRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL-------ILDEATS 356 (426)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~il-------llDEpts 356 (426)
+ +.+ . .+++++++.. +| |+||.++|+ ||||||||++||||++++|++. +=|.|..
T Consensus 77 -~------~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~ 139 (171)
T 2f1r_A 77 -V------SEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD 139 (171)
T ss_dssp -C------CHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred -C------Chh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence 1 111 1 6789999999 99 999999995 9999999999999999999873 2244421
Q ss_pred ---CCCHHHHHHHHHHHHHH
Q 014366 357 ---ALDSRSELLVRQAVDRL 373 (426)
Q Consensus 357 ---~LD~~~~~~i~~~l~~~ 373 (426)
-+|....+.+.+.+.+.
T Consensus 140 ~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 140 GHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp SSCEECTTCHHHHHHHHHHH
T ss_pred cCcccCcccHHHHHHHHHHH
Confidence 23444556666666443
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-22 Score=187.69 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=101.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 46999999999999999999999999999999999976 555443 3577899999996333459999
Q ss_pred HHcCCCCCCC------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC
Q 014366 282 NIGYRDLMTK------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (426)
Q Consensus 282 ni~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt 355 (426)
|+.+...... .+.+.+.+.++. +..+.+. ....||+||+||+++ ++++.+|+++|+|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 8764221111 122222222221 1112222 346899999999988 6889999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH-H-hcCEEEEEeCCE
Q 014366 356 SALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV-M-MAKRVFLLDNGK 402 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~-~~D~i~vl~~G~ 402 (426)
...|.. +.++ .+.+++++||+...+ + .++++ ++|+
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 887764 2222 267999999984433 4 34444 6674
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=163.08 Aligned_cols=81 Identities=32% Similarity=0.381 Sum_probs=72.1
Q ss_pred CCCCCCCChHHHHHHHHH------HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCE
Q 014366 322 GPRGSSLSGGQRQRLAIA------RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iA------Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~ 394 (426)
..++.+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+.+....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 456789999999999876 99999999999999999999999999999999875 46899999999966568999
Q ss_pred EEEE--eCCE
Q 014366 395 VFLL--DNGK 402 (426)
Q Consensus 395 i~vl--~~G~ 402 (426)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-21 Score=179.68 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=103.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-------CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDP-------LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-------~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
.+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .. ++++++++|+..+++.|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 445888887642 11 2347788888888877999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeeccCCCCCHH
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDSR 361 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEpts~LD~~ 361 (426)
.+.... +........+. +.+.+. +++ ..+|+++++||||+.+|+.
T Consensus 95 ~~~~~~---~~~~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 95 YVARAF---NSNHQMLLVQQ--AEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp EEEECC---SHHHHHHHHHH--HHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHH
T ss_pred EEEecC---ChHHHHHHHHH--HHHHHH----------------------------HhcccCCceeEEEECChHHHhccc
Confidence 775321 11111111110 111111 111 3589999999999999984
Q ss_pred -------HH-----HHHHHHHHHHc--CCceEEEeccChH----HHH-hcCEEEEEeCC
Q 014366 362 -------SE-----LLVRQAVDRLL--GHHTVLVIAHHLE----TVM-MAKRVFLLDNG 401 (426)
Q Consensus 362 -------~~-----~~i~~~l~~~~--~~~tvi~itH~~~----~~~-~~D~i~vl~~G 401 (426)
.+ ..+.+.|.++. .+.|||++||..+ .+. .||++++|++|
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 142 YIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 21 25666666653 3789999999544 465 69999999976
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-23 Score=208.44 Aligned_cols=177 Identities=20% Similarity=0.196 Sum_probs=138.2
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEec-----CCCCCc
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQ-----DITLFS 276 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 276 (426)
++|++++ +++|++++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .++..+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3667665 8999999999999999999999999999998 899988776653 2 35678999999 888899
Q ss_pred ccHHHHHcCCCCC----CCCCHHHHHHHHHHhch-----------------HHHH------------HhcCCCcccccCC
Q 014366 277 GTVAENIGYRDLM----TKIDMERVEHTARTANA-----------------DEFV------------RTLPQGYNTHIGP 323 (426)
Q Consensus 277 ~ti~eni~~~~~~----~~~~~~~~~~~~~~~~l-----------------~~~~------------~~lp~g~~t~~~~ 323 (426)
.++++|+...... ...+.+.+..+++.++. +..+ ..++.++++.+++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999874210 01155666666665432 1221 1245688999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCE--EEeeccCCCCCHH----H-----HHHHHHHHHHHcCCceEEEeccChH
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSR----S-----ELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~i--lllDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
++..+|+| ||+++||+++.+|++ +|+||+|++||.. + +..+.+.+....+++|.+.++||++
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 88888999 999999999999999 9999999999965 2 3346666776778899999999986
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-23 Score=188.07 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=109.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc---ccHHHHHcCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS---GTVAENIGYRDL 288 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~---~ti~eni~~~~~ 288 (426)
.++|++++|+||||||||||+++|+|+++| .++|++|++.+++ .|+++|..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 5899999998873 378887755321
Q ss_pred C-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH----HHHHHHHHHhcCCCCEEEeeccCCC------
Q 014366 289 M-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ----RQRLAIARALYQNSSVLILDEATSA------ 357 (426)
Q Consensus 289 ~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq----kQRl~iARal~~~p~illlDEpts~------ 357 (426)
. ...+.+.+.+.++..++.+.+ ..++..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 1 123445566665554433222 22456788885 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH--cCCceEEEeccCh
Q 014366 358 -LDSRSELLVRQAVDRL--LGHHTVLVIAHHL 386 (426)
Q Consensus 358 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~~ 386 (426)
||+..+..+.+.+.+. .+++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998775 2478999999985
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-23 Score=209.01 Aligned_cols=225 Identities=14% Similarity=0.085 Sum_probs=151.3
Q ss_pred HHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC-CCCCccE-
Q 014366 112 CGGSLLVSG-GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDV- 188 (426)
Q Consensus 112 ~~g~~lv~~-g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~i- 188 (426)
+.|.+.+.. +.++.+.+.+|+.++..+..| .+......+..+..+.+|+..++ ++........... ....+.+
T Consensus 53 ~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~it 128 (361)
T 2gza_A 53 RASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRT 128 (361)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCC
T ss_pred ECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCC
Confidence 345555554 789999999999887776655 33333333334445566777766 3321111000000 0112234
Q ss_pred --------EEEeEEEE---eCCCCCCcc---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 189 --------KFCNISFK---YADNMPLVL---------DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 189 --------~~~~v~~~---y~~~~~~~l---------~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
+|++++|+ |++...++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|.+
T Consensus 129 l~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 129 LEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp HHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 78899998 864223455 9999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcceEEEe-cCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 249 DDHDVQNIRLDSLRRHVGLVS-QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 249 ~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
+|. .++.....++.+++++ |++.+ .
T Consensus 209 e~~--~e~~~~~~~~~v~~v~~q~~~~----------------------------------------------------~ 234 (361)
T 2gza_A 209 EDV--PELFLPDHPNHVHLFYPSEAKE----------------------------------------------------E 234 (361)
T ss_dssp ESS--SCCCCTTCSSEEEEECC----------------------------------------------------------
T ss_pred CCc--cccCccccCCEEEEeecCcccc----------------------------------------------------c
Confidence 985 3444444577899998 65431 0
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC-ceEEEeccChHHHHhcCEEEEEeCC
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
++++..+|-.|++++..+|+.+++||+.. .++.+.++.+..+ .|++..+|..+....+||+..+..|
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 12233477788888888999999999986 2345566665544 5788999998766677777777655
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-23 Score=191.29 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=117.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCccc
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGT 278 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~t 278 (426)
+++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 35899999999999999999999999986 78887 589888878888888765 7999999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH-HhcCCCCEEEeeccCCC
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR-ALYQNSSVLILDEATSA 357 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR-al~~~p~illlDEpts~ 357 (426)
+.+|+ ++. +.++++++++.....- .+..|+|+++.... ++ .|| +++.+|++++|||+|++
T Consensus 76 ~~~n~-~g~-----~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~ 136 (198)
T 1lvg_A 76 FSGNL-YGT-----SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRL 136 (198)
T ss_dssp ETTEE-EEE-----EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHH
T ss_pred ecCcc-CCC-----CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHh
Confidence 99997 542 4566777776422110 01123344443221 12 567 89999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 358 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|.++++.|.+.|.+..++ +.++| +. ..+|+|+++++
T Consensus 137 ~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 137 RNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred cCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999999876543 35677 33 78999988864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-21 Score=188.38 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=111.5
Q ss_pred cceee-eEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCc----cE-EEEcCEeCCCCCHHHHhcceEEEecCCCCC
Q 014366 204 VLDQL-NLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLS----GC-ILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (426)
Q Consensus 204 ~l~~i-sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~----G~-I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 275 (426)
.|+.+ ++.+++|++++|+||||||||||++.+++.+ +|++ |. |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 45655 5799999999999999999999999999998 6776 67 899987641 245688899999888
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc-------CCCCE
Q 014366 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-------QNSSV 348 (426)
Q Consensus 276 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~-------~~p~i 348 (426)
..++.+|+.+.... + |.+|+|++.++++++ .+|++
T Consensus 193 ~~~v~~ni~~~~~~---~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 193 PDEVLKHIYVARAF---N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp HHHHGGGEEEEECC---S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred HHHHhhCEEEEecC---C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 78999999775321 1 223444444444444 78999
Q ss_pred EEeeccCCCCCHHH------------HHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 349 LILDEATSALDSRS------------ELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 349 lllDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
+|+||||+++|+.. ...+...|.++. .+.|||+++|...... .++...+...|++.+.+.+.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~ 311 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATL 311 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcE
Confidence 99999999999863 244555555543 3689999999876553 23445566667766665543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-23 Score=207.87 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=128.3
Q ss_pred cceeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhcCCCCCc----cEEEEc----CEeCCCCCHHHHhcceEEEecCCC
Q 014366 204 VLDQLNLHIRA--GETVALIGPSGGGKSTLAKLLLRLYDPLS----GCILVD----DHDVQNIRLDSLRRHVGLVSQDIT 273 (426)
Q Consensus 204 ~l~~isl~i~~--Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~----G~I~~~----g~~i~~~~~~~~r~~i~~v~Q~~~ 273 (426)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|+++ |.++ ..+..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 999874 5554 3444455 55999999988
Q ss_pred CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc-CCCCEEEee
Q 014366 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-QNSSVLILD 352 (426)
Q Consensus 274 lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~-~~p~illlD 352 (426)
+|..|++||+.++.. +..... . ..+|+|++||..+++++. .+|++++||
T Consensus 235 ~~~~t~~~nl~~~~~--~~~~~~-------------~---------------~~~~~~~~~~~~i~~~~~~~~~~lllLd 284 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT--DFITTQ-------------A---------------FCIQYEGKAHPFLDSMIKEYPFDVTILL 284 (365)
T ss_dssp HHHHHHCSSEEEESS--CHHHHH-------------H---------------HHHHHHSCCCHHHHHHHHHSCCSEEEEE
T ss_pred HHHHhccCCEEEEeC--CchHHH-------------H---------------HHHHHcCCCCHHHHHHHhhcCCCEEEEC
Confidence 888999999987542 110100 0 123556678888888774 689999999
Q ss_pred c---cC------CCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEecccccccc
Q 014366 353 E---AT------SALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 353 E---pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
| |+ +++|+..+..+.+.|.++.+ +.++++++|.-...+.+|++..+++ +.+.+++++|.+
T Consensus 285 E~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 285 KNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp ECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 9 65 58999999999999977643 6789999976444456676666653 445556666544
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-21 Score=188.69 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=82.2
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~-~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
+||+++|++. .++++++|+| +|+||||||||||++.|+|. ..|++| |.++|.++.. . .. ++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEEe
Confidence 5788999753 5999999998 99999999999999999998 889999 8888877643 1 11 35689999
Q ss_pred cCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 270 QDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 270 Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|++.++ ..|+.|+..++.... ..++.....+. +.+..+.. ..++|||||||+.+|||++ +
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~--~~e~~~~l~~~--l~~~~~~~-----------~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN--CRDCFKTIISY--IDEQFERY-----------LHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp C---CCEEEEEEEEC-------------CTTHHHH--HHHHHHHH-----------HHHHTSSCCTTCCCCCCCE----E
T ss_pred cCCCcccCcchhhhhhhhhhcC--cHHHHHHHHHH--HHHHHHHH-----------HHHhCHHhhhhhhhhhhhh----e
Confidence 988765 459999987753211 01111111111 12222221 2478999999999999986 9
Q ss_pred EEeeccCCC-CCHHHHHHHHHHHHHHcC--CceEEEeccChH
Q 014366 349 LILDEATSA-LDSRSELLVRQAVDRLLG--HHTVLVIAHHLE 387 (426)
Q Consensus 349 lllDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~ 387 (426)
+++||||++ ||+... +.++++.+ +.++|+.+||+.
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999985 999874 44444433 468888999973
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-21 Score=207.38 Aligned_cols=187 Identities=14% Similarity=0.222 Sum_probs=119.7
Q ss_pred cEEEEeEEEEeCCCCCCcceee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC
Q 014366 187 DVKFCNISFKYADNMPLVLDQL----------NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN 255 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~i----------sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~ 255 (426)
.++++|+++.|+...+++++.+ +++++. +||+||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5789999999975433455444 366664 999999999999999999999988 79999999998632
Q ss_pred --C-CHHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 256 --I-RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 256 --~-~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
. ....+++.++|++|++.+++. ||+||+.+.. . ...... ..+|
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------------~------~~~~~~-----------~~~s-- 133 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------------N------AIAGEG-----------MGIS-- 133 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------------H------HHHCSS-----------SCCC--
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------------H------HhcCCc-----------cccc--
Confidence 1 134678899999999998865 9999985320 0 011000 1122
Q ss_pred HHHHHHHHHHhcCCCCEEEeecc------CCCCCHHHHHHHHHHHHHHc-C--CceEEEeccChHH--------HHh---
Q 014366 332 QRQRLAIARALYQNSSVLILDEA------TSALDSRSELLVRQAVDRLL-G--HHTVLVIAHHLET--------VMM--- 391 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEp------ts~LD~~~~~~i~~~l~~~~-~--~~tvi~itH~~~~--------~~~--- 391 (426)
++++.++.+...+|+++++||| |++||+..++.+.+.++++. + +.++++++|+++. +..
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 2344555556678999999999 99999999999999999863 2 3578889999752 222
Q ss_pred --cCEEEEEeCCEEEEecccc
Q 014366 392 --AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 392 --~D~i~vl~~G~i~e~g~~~ 410 (426)
...|.|+.++.+++.|+.+
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTT
T ss_pred cCCceEEEecchhhcCcccHH
Confidence 3568899998888877754
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=194.64 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=104.8
Q ss_pred cEEEEeEEEEe-----CCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKY-----ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y-----~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~ 261 (426)
.|.+++...-. +.+.+.+++|+||++++|++++|+||||||||||+|+++++.-..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 57777754321 112357999999999999999999999999999999997542110
Q ss_pred hcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 262 RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+.-.++|++..-+ ++.+++. ...++.+.+. .+..++|+||+|+..++++
T Consensus 701 -q~g~~vpa~~~~i--~~~d~i~-----------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 701 -QIGSYVPAEEATI--GIVDGIF-----------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp -HHTCCBSSSEEEE--ECCSEEE-----------------EEC---------------------CCHHHHHHHHHHHHHH
T ss_pred -hcCccccchhhhh--hHHHHHH-----------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh
Confidence 0011233221100 0111110 0011111111 1235789999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHH-HHHHHHc--CCceEEEeccChHHHHhcCEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVR-QAVDRLL--GHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~~~~~~~~D~i 395 (426)
+.+|+++||||||+|||+.....+. ..++.+. .++|+|++||+++....||+.
T Consensus 750 -a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 750 -ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp -CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred -ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 8999999999999999999888887 5566552 478999999999887766653
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-20 Score=184.90 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=106.2
Q ss_pred EeEEEEeCCCCCCcceeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHh
Q 014366 191 CNISFKYADNMPLVLDQLNL-------HIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl-------~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r 262 (426)
.+++++|.+...+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 57778875544567888776 77899999999999999999999999999987 56665544333 221 22
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
...++++|...... ..+..+ +|||||
T Consensus 168 ~~~~~v~q~~~~~~--------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 168 SKKCLVNQREVHRD--------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CSSSEEEEEEBTTT--------------BSCHHH----------------------------------------HHHHHT
T ss_pred ccccceeeeeeccc--------------cCCHHH----------------------------------------HHHHHh
Confidence 33455665432110 001100 999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
..+|+++++|||| |.++.+.+.+. ...++|+++++|+.+.+..|||+++|..|
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999 77775554444 23478999999999998889999888543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-21 Score=178.57 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=101.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCccEEEEc-------CEeCCC
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILVD-------DHDVQN 255 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~-----~p~~G~I~~~-------g~~i~~ 255 (426)
|+++|++|+|+. +++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+. +..+.+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999962 47888 889999999999999999999999999998 8888887542 222211
Q ss_pred ---CC--------HHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc-cC
Q 014366 256 ---IR--------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH-IG 322 (426)
Q Consensus 256 ---~~--------~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~ 322 (426)
.. ...+++.+++++|+...+++ .+..++..+. ...++++.+. +... +.... ++
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~---------~~~~--~~~~~~v~ 144 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL---KDLDQQMIEW---------AVDS--NIAVLVLL 144 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---CHHHHHHHHH---------HHHT--TCCEEEEE
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC---chhHHHHHHH---------HHHc--CCCeEEEE
Confidence 10 12234444455544332222 3323332211 1111122222 2211 23222 35
Q ss_pred CCCCCCChHHHHH-HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 323 PRGSSLSGGQRQR-LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 323 ~~g~~LSgGqkQR-l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
.+...+|+||||| +..+|+++.+|+.+++|||||++|..+..++.+.|.++.
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 5666899999999 899999999999999999999999999999999998764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-20 Score=181.98 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH--hcceEEEecCCCCCcc-cHHHHHcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSL--RRHVGLVSQDITLFSG-TVAENIGYR 286 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~--r~~i~~v~Q~~~lf~~-ti~eni~~~ 286 (426)
+|++++|+|||||||||++++|+|+++|++|+|.++|.|+..... ..+ |..++|++|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999865431 223 4569999999988765 899998542
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCCCCCHHHHH
Q 014366 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSEL 364 (426)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts~LD~~~~~ 364 (426)
.. +.... ..++ .+ |.. ......++..++||++||||+..+|+ ++.|| |+++ .
T Consensus 181 ~~-------------~~~d~-~llD-t~-G~~---~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~ 234 (304)
T 1rj9_A 181 KA-------------RGYDL-LFVD-TA-GRL---HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------Q 234 (304)
T ss_dssp HH-------------HTCSE-EEEC-CC-CCC---TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------T
T ss_pred Hh-------------CCCCE-EEec-CC-CCC---CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------H
Confidence 10 00000 0011 11 110 01112346667999999999999999 44455 4444 3
Q ss_pred HHHHHHHHHc--CCceEEEeccChHH
Q 014366 365 LVRQAVDRLL--GHHTVLVIAHHLET 388 (426)
Q Consensus 365 ~i~~~l~~~~--~~~tvi~itH~~~~ 388 (426)
.+.+.++++. .+.|+|++||....
T Consensus 235 ~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 235 NGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCccc
Confidence 4444444442 26799999998543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-20 Score=187.83 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=100.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.|.++|++++|++ ..+++++||+| +|+||||||||||+++|+|...|+.| .+|.++... ....+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 45889999999975 36999999998 99999999999999999999886665 233332211 11123568
Q ss_pred EEEecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++++|++.++ ..|+.||+.++.... ....+.. +.+++.. .++.+++||++||||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~---~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD---NSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC--------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc---chhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 9999998877 569999998764311 1111111 2223322 345677889999999999
Q ss_pred CCC---EEEeeccC-CCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSS---VLILDEAT-SALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~---illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
+|+ ++++|||| ++||+... +.++++..+.++|+|.|..+.
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTS
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccC
Confidence 999 99999999 69998874 333444456788888887654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-20 Score=168.88 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=113.4
Q ss_pred CcceeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc---ceEEEecCCCCCccc
Q 014366 203 LVLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR---HVGLVSQDITLFSGT 278 (426)
Q Consensus 203 ~~l~~isl-~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~t 278 (426)
+.|+++.. .+++|++++|+||||||||||++.+++...+++|.+.+.+.+. +..+++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 46888887 8999999999999999999999999998888888888866443 2333222 23443333211
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCC
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATS 356 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts 356 (426)
+++..... ... . .. + ..+. ...|.++.++...+.+...+|+ ++++||||+
T Consensus 83 --~~~~~~~~---~~~-~-------------~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 83 --KKLIIIDA---LMK-E-------------KE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp --TTEEEEEC---CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred --CCEEEEec---ccc-c-------------cC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 11111000 000 0 00 0 0011 2348999998888888778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCceEEEeccCh--------HHHH-hcCEEEEEeCC
Q 014366 357 AL--DSRSELLVRQAVDRLL--GHHTVLVIAHHL--------ETVM-MAKRVFLLDNG 401 (426)
Q Consensus 357 ~L--D~~~~~~i~~~l~~~~--~~~tvi~itH~~--------~~~~-~~D~i~vl~~G 401 (426)
.+ |+.....+.+.|+++. .+.|+|++||+. ..+. .||+|++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988889999998873 368999999998 3354 69999999864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-19 Score=193.68 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=109.8
Q ss_pred ccEEEEeEEEEeCC-----CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHH
Q 014366 186 GDVKFCNISFKYAD-----NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 186 ~~i~~~~v~~~y~~-----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~~~~~ 259 (426)
+.|.+++.. +|- +...+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 357777652 221 224689999999 99999999999999999999999997532 2231 1111
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
-+..+++++| +|. .++.||+..+ ...+|+++++ ++.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~--------------------------------------~stf~~e~~~-~~~ 679 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG--------------------------------------RSTFMVEMTE-TAN 679 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-------------------------------------------------CHHHHHH-HHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh--------------------------------------hhhhhHHHHH-HHH
Confidence 1234666655 343 2455544211 1245666654 444
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLV-RQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
+...+.+|+++|||||++|+|+.....+ .+.++.+. .+.|+|++||+.+....||++..+++|++...
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 4556899999999999999998766554 56666653 37899999999988778888877788877543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-19 Score=168.57 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=101.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cH----HHH
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TV----AEN 282 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~en 282 (426)
-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+.+... ..++.++|+||++..|+. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999998866432 235679999999988865 66 577
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~ 362 (426)
+.+.......+.+.+ +.++..++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~v------------------------------------------~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREAI------------------------------------------EQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHHH------------------------------------------HHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHHH------------------------------------------HHHHhcCCeEEEE-----ECHHH
Confidence 654321111122222 2222336999999 99999
Q ss_pred HHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 363 ELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 363 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
...+.+.+. ++.||+++||+++.+.. |+ +++| .++++++.
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 999998875 47899999999998764 32 6667 45555554
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-18 Score=151.66 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE-
Q 014366 324 RGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL- 398 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl- 398 (426)
....||||||||++|||+++ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+......||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 45789999999999999996 5679999999999999999999999999987778999999999888899999855
Q ss_pred -eCCEE
Q 014366 399 -DNGKL 403 (426)
Q Consensus 399 -~~G~i 403 (426)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 56753
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-18 Score=175.14 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=114.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~--~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+++++ +++|++. + |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++.
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 456666 7888653 4 9999999999999 9999999999999999999984 34544443333334567
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhc-------CCCcccc-------cCCCC
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTL-------PQGYNTH-------IGPRG 325 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~l-------p~g~~t~-------~~~~g 325 (426)
++|++|++.++. .|+.||+.++... +... +.+.++. ...+++... +..-|+. +-+.+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~---~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQI---NKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-C---CHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred EEEEeecCccccccchhhhhhhhhcc---ccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 999999998874 5999999887532 2211 1111111 122233322 1112222 12334
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH-Hc-CCceEEEeccC
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR-LL-GHHTVLVIAHH 385 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 385 (426)
..|+-.+ +.++++|..+++++++|||+..|.+.....+.+.+++ +. .+.+|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 4677665 7999999999999999999999999888888888886 64 36788888865
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-19 Score=174.11 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=93.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCC-C
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-I 292 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~ 292 (426)
++.+++|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.+... .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999999764 2 0 1 445667799999999999999876421000 0
Q ss_pred CHHHHHHHHHHhchHHHHHhcCCCcccc------cCCCCCCCChHHHHHHHHH--HHhcCCCCEEEeeccCCCCCHHH
Q 014366 293 DMERVEHTARTANADEFVRTLPQGYNTH------IGPRGSSLSGGQRQRLAIA--RALYQNSSVLILDEATSALDSRS 362 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~------~~~~g~~LSgGqkQRl~iA--Ral~~~p~illlDEpts~LD~~~ 362 (426)
.......+.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||||+++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001112234567888899997754 4566789999999999998 555 999999999999999864
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-17 Score=158.81 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=99.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHc-CCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG-YRDLM 289 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~-~~~~~ 289 (426)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... ...+.|+..+... ..+..++. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 378999999999999999999999998664 56663 3443211 2457777765432 12222221 121
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC--CCCHHHH---H
Q 014366 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS--ALDSRSE---L 364 (426)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts--~LD~~~~---~ 364 (426)
..+.......++.. ++....+.+...||+||+|++ |+++.+|+++++||||+ ++|.... .
T Consensus 93 -~~~~~~~~~~~~~l-----------~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 93 -HLSAEERQAVADGL-----------LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -TSCHHHHHHHHHHE-----------EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -hcChhhhhhccCce-----------EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 12223322333322 233334556789999998865 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHc--CCceEEEeccChHHH
Q 014366 365 LVRQAVDRLL--GHHTVLVIAHHLETV 389 (426)
Q Consensus 365 ~i~~~l~~~~--~~~tvi~itH~~~~~ 389 (426)
.+.+.|+++. .++|||+++|.....
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777887763 378999999997654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-19 Score=160.04 Aligned_cols=152 Identities=16% Similarity=0.060 Sum_probs=95.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC-
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM- 289 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~- 289 (426)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++.... ..++.++|++|++. ...|+.+|+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78899999987653221 11234678888654 345888887532100
Q ss_pred --CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHH
Q 014366 290 --TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367 (426)
Q Consensus 290 --~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~ 367 (426)
.+.. ..++..+...++..+.. .+.++..+|+|++||+++||++.++|+++ +|+...+.+.
T Consensus 80 ~~~~~~-~~~~~~~~~~~l~~~~~---------~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 80 AKEGYF-VILDGVVRPDWLPAFTA---------LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHTSCE-EEECSCCCTTTTHHHHT---------TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred hccCCe-EEEeccCcHHHHHHHHh---------cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0000 00000000011111110 12334679999999999999999999876 6888777777
Q ss_pred HHHHHHcCCceEEEeccC
Q 014366 368 QAVDRLLGHHTVLVIAHH 385 (426)
Q Consensus 368 ~~l~~~~~~~tvi~itH~ 385 (426)
+.+..+.....+++.|++
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 776654322233444543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-19 Score=171.91 Aligned_cols=143 Identities=21% Similarity=0.188 Sum_probs=108.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC--------CCCccEEEEcCEeCCCCC---------------HHHHhcceEEE---e
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY--------DPLSGCILVDDHDVQNIR---------------LDSLRRHVGLV---S 269 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~--------~p~~G~I~~~g~~i~~~~---------------~~~~r~~i~~v---~ 269 (426)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999987653 23566778888 7
Q ss_pred cCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHH----------------HHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTA----------------RTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 270 Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
|++.+ |+.++.||..++.+ ..+...+ ..+++.++.+.+ .++|+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p------~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~ 146 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQ 146 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH------HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHH
T ss_pred hcCCCCCCEEEEeCCCCCCH------HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHH
Confidence 88765 57799999977642 1111111 111222222221 2689999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
+||+..+++++.+|+++ ||| +.+.+.++++..+.||+++||+..
T Consensus 147 ~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 147 SQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp HHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred HHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99999999999999987 998 677888888777789999999753
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=143.99 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=96.0
Q ss_pred cceeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 204 VLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 204 ~l~~isl-~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
.|+++.. .+++|++++|+||||||||||++.+++ ++..+.++++..+ ..+.. .+.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~~ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQM 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHHH
Confidence 5666654 689999999999999999999999999 3333444443321 11111 12221
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH--HHHHHHHHHHhcCC-CCEEEeeccCCCCC
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIARALYQN-SSVLILDEATSALD 359 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG--qkQRl~iARal~~~-p~illlDEpts~LD 359 (426)
.... ..+.++ +.+.+. ...+|++ ++|+++.+|+++.+ |+++++||||+.+|
T Consensus 66 ~~~~----~~~~~~------------~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 66 AETR----GLNPEE------------ALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHTT----TCCHHH------------HHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHhc----CCChHH------------HhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 1110 111111 111110 1133444 36789999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CceEEEeccChH-------------HHH-hcCEEEEEeCC
Q 014366 360 SRSE--------LLVRQAVDRLLG--HHTVLVIAHHLE-------------TVM-MAKRVFLLDNG 401 (426)
Q Consensus 360 ~~~~--------~~i~~~l~~~~~--~~tvi~itH~~~-------------~~~-~~D~i~vl~~G 401 (426)
+... ..+.+.|+++.+ +.|+|+++|... .+. .||++++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 334555666532 689999999865 344 69999999864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-19 Score=175.66 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=117.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRR 263 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~ 263 (426)
|++++++++|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... ...+.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 344566677753 358999999999999999999999999999999999999999999999988753221 23467
Q ss_pred ceEEEecCCCCCcc-------------cHHHHHcC----CCCC-----CC--CCHHHHHHHHHH-------------hch
Q 014366 264 HVGLVSQDITLFSG-------------TVAENIGY----RDLM-----TK--IDMERVEHTART-------------ANA 306 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-------------ti~eni~~----~~~~-----~~--~~~~~~~~~~~~-------------~~l 306 (426)
++++++|++.+|.. +++|.+.. +... .+ .+...+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 79999999988742 12222200 0000 00 001111000000 000
Q ss_pred HHHHHhcCCCcc-cccCC-CCCCCChHHHHHHHHHHHhcC------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 307 DEFVRTLPQGYN-THIGP-RGSSLSGGQRQRLAIARALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 307 ~~~~~~lp~g~~-t~~~~-~g~~LSgGqkQRl~iARal~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
.+.+...|.-+- +..+. ....+|+|++|++..|++++. +|+++. ||++|......+.+.|.+..
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 000111121110 12221 224579999999999999998 688886 99999999999999987753
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=144.84 Aligned_cols=146 Identities=20% Similarity=0.253 Sum_probs=89.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc--CCCC-----CccEEEEcCEeCCCC-CHHHHhcceEEEecCCCCCcccHHHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR--LYDP-----LSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p-----~~G~I~~~g~~i~~~-~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+.... ....+.+.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 678899988652110 112233445655443 4566
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCCCH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSALDS 360 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~LD~ 360 (426)
+.+... .+.++..+.++ -++.++ .+|+++++|||++.+|+
T Consensus 93 ~~~~~~---~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 93 VAYARA---FNTDHQTQLLY-----------------------------------QASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp EEEEEC---CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred eEEEec---CCHHHHHHHHH-----------------------------------HHHHHHhcCCceEEEEeCchHHHHH
Confidence 554321 12222211111 111111 68999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHc--CCceEEEeccChHHH-------------------H-hcCEEEEEeCC
Q 014366 361 R-------S-----ELLVRQAVDRLL--GHHTVLVIAHHLETV-------------------M-MAKRVFLLDNG 401 (426)
Q Consensus 361 ~-------~-----~~~i~~~l~~~~--~~~tvi~itH~~~~~-------------------~-~~D~i~vl~~G 401 (426)
. + ...+...|.++. .+.|||+++|..... . .||.+++|++|
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 233444454443 268999999965432 1 59999999875
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-18 Score=157.79 Aligned_cols=168 Identities=15% Similarity=0.058 Sum_probs=106.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccHHHHHcCCCCCCCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID 293 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~~~~ 293 (426)
|++++|+|||||||||++++|++ |.+|.+.++|.++... ...++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999988654321 2457777766433 347777764310
Q ss_pred HHHHHHHHHHhchHHHHHhcCCCcccccCC----CCCCC--ChHHHHHHHHHH------HhcCCCCEEEeeccCCCCCHH
Q 014366 294 MERVEHTARTANADEFVRTLPQGYNTHIGP----RGSSL--SGGQRQRLAIAR------ALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~----~g~~L--SgGqkQRl~iAR------al~~~p~illlDEpts~LD~~ 361 (426)
..... .+.. . =++...+. ....+ |+|++|++.++. +++.+|+...+|+ ++|+.
T Consensus 67 ----~~~~~-~~~~-~------ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~ 131 (189)
T 2bdt_A 67 ----VNFLL-AQND-V------VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER 131 (189)
T ss_dssp ----HHHHH-TTCE-E------EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred ----HHHHh-cCCc-E------EEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence 00000 0000 0 00000000 00124 888888888888 8888888888884 89998
Q ss_pred HHHHHHHHHHHHcC-CceEEEeccC-hHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 362 SELLVRQAVDRLLG-HHTVLVIAHH-LETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 362 ~~~~i~~~l~~~~~-~~tvi~itH~-~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
..+. .+.+..+.. +.++|.+||. ++.+. .||+|+ ++|+++..|+++-+..+
T Consensus 132 ~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~~ 185 (189)
T 2bdt_A 132 CLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEHH 185 (189)
T ss_dssp GGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---------
T ss_pred HHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhhc
Confidence 8777 777777643 5799999999 88885 799998 99999999988766543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-18 Score=160.31 Aligned_cols=116 Identities=20% Similarity=0.209 Sum_probs=84.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC--C
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL--M 289 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~--~ 289 (426)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+++...++.+..+|+..... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 24678888877777666666532110 0
Q ss_pred -CCCCHHHHHHHHHHhchHHHHHhcCCC--cccccCCCCCCCChHHHHHHHHH-HHhcCCCCEEEeeccC
Q 014366 290 -TKIDMERVEHTARTANADEFVRTLPQG--YNTHIGPRGSSLSGGQRQRLAIA-RALYQNSSVLILDEAT 355 (426)
Q Consensus 290 -~~~~~~~~~~~~~~~~l~~~~~~lp~g--~~t~~~~~g~~LSgGqkQRl~iA-Ral~~~p~illlDEpt 355 (426)
...+.+.+ .+++..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~---------~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 PETFDFEGF---------QRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGBCHHHH---------HHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CchhhHHHH---------HHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 01122222 2233333333 66777888899999999999998 9999999998899984
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-17 Score=155.68 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=97.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHcCCC--
Q 014366 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRD-- 287 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~-- 287 (426)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++. ++.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 1234456677888776654 8888885310
Q ss_pred ----C--C--CCCCHHHHHHHHHHhchH--HHHHhcCC-CcccccCCCCCCCChHHHHHHHHHHHh-cCCCCEEEee---
Q 014366 288 ----L--M--TKIDMERVEHTARTANAD--EFVRTLPQ-GYNTHIGPRGSSLSGGQRQRLAIARAL-YQNSSVLILD--- 352 (426)
Q Consensus 288 ----~--~--~~~~~~~~~~~~~~~~l~--~~~~~lp~-g~~t~~~~~g~~LSgGqkQRl~iARal-~~~p~illlD--- 352 (426)
. . ...+.++.....+..... -+++.-|+ .++-...++...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 0 011222222111101100 00000000 011112334568998 66 888 9999999999
Q ss_pred -ccCCCCCHHHHHHHHHHHHHHc
Q 014366 353 -EATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 353 -Epts~LD~~~~~~i~~~l~~~~ 374 (426)
|||++||..+++.+.+.++++.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999988764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-16 Score=156.70 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=102.3
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHH--HhcceEEEecCCCCCc-c
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDS--LRRHVGLVSQDITLFS-G 277 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~ 277 (426)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.|..... ... .|+.++|++|++.+++ .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46889999999999999999999999999999999999999999887764321 122 3667999999988764 5
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC--CCCCChHHHHHHHHHHHhcC-CC-CEEEeec
Q 014366 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR--GSSLSGGQRQRLAIARALYQ-NS-SVLILDE 353 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~--g~~LSgGqkQRl~iARal~~-~p-~illlDE 353 (426)
|+++|+.++.. .+.+ .+ + +||. |.. -.++-.--+|++.++|++.. .| ++++..+
T Consensus 363 tV~e~l~~a~~-~~~D---------------vV--L---IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID---------------VL--I---ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHH-TTCS---------------EE--E---ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHh-cCCC---------------EE--E---EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 99999965421 0100 00 0 0110 000 00111123578899998754 46 3565556
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCceEEEecc
Q 014366 354 ATSALDSRSELLVRQAVDRLLGHHTVLVIAH 384 (426)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH 384 (426)
||++.|.... .+.+.+. -+.|.+++||
T Consensus 421 attGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred CcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 8888665432 2223321 2578999999
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.3e-15 Score=146.44 Aligned_cols=75 Identities=29% Similarity=0.388 Sum_probs=68.1
Q ss_pred CCCCChHHHHHH------HHHHHhcCC-CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEE
Q 014366 325 GSSLSGGQRQRL------AIARALYQN-SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 325 g~~LSgGqkQRl------~iARal~~~-p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~v 397 (426)
...|||||+||+ ++||++..+ |+++||||||++||+.+...+.+.|.++.++.+||++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 468999999988 668999999 9999999999999999999999999987655799999999986568999999
Q ss_pred Ee
Q 014366 398 LD 399 (426)
Q Consensus 398 l~ 399 (426)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-16 Score=140.30 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=71.9
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEec
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q 270 (426)
++++++|++ ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 456677754 35899999999999999999999999999999999999 9999999999877421 1112 27999
Q ss_pred CCCCCcccHHHHHcC
Q 014366 271 DITLFSGTVAENIGY 285 (426)
Q Consensus 271 ~~~lf~~ti~eni~~ 285 (426)
++.+|..|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998887799999853
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-18 Score=171.16 Aligned_cols=130 Identities=20% Similarity=0.197 Sum_probs=91.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhcceEEEe---------c
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRRHVGLVS---------Q 270 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~~~r~~i~~v~---------Q 270 (426)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... +..++++.+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999998876321 1122344566655 9
Q ss_pred CCCCC--c-----ccHHHHHcCCCC-------CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 271 DITLF--S-----GTVAENIGYRDL-------MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 271 ~~~lf--~-----~ti~eni~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|.++ . .|+.+|+.++.. .+..+.......+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 98763 2 389999865311 0111222333344555554432 235899999999
Q ss_pred HHHHHhcCCCCEEE
Q 014366 337 AIARALYQNSSVLI 350 (426)
Q Consensus 337 ~iARal~~~p~ill 350 (426)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-15 Score=148.09 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=107.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH----HHhc--ceEEEecCCCCCcc-cHHHHHc
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD----SLRR--HVGLVSQDITLFSG-TVAENIG 284 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~----~~r~--~i~~v~Q~~~lf~~-ti~eni~ 284 (426)
.++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|+..+++. +++||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998765533 2333 35699999988865 9999985
Q ss_pred CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHH
Q 014366 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364 (426)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~ 364 (426)
++.. +... .+ -+||. |.. ..-..=.++.-.++|++..++++++||.+|. .|
T Consensus 206 ~~~~-------------~~~d---~v-----liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~----- 256 (328)
T 3e70_C 206 HAKA-------------RGID---VV-----LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA----- 256 (328)
T ss_dssp HHHH-------------HTCS---EE-----EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH-----
T ss_pred HHHh-------------ccch---hh-----HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH-----
Confidence 4310 0000 00 01110 100 0011123344458999998888999996554 33
Q ss_pred HHHHHHHHHc--CCceEEEeccChHH---------HH-hcCEEEEEeCCEEE
Q 014366 365 LVRQAVDRLL--GHHTVLVIAHHLET---------VM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 365 ~i~~~l~~~~--~~~tvi~itH~~~~---------~~-~~D~i~vl~~G~i~ 404 (426)
+.+.++.+. .+.|+|++||--.+ +. ..-.|..+..|+-+
T Consensus 257 -~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 257 -IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 333333332 36799999995422 11 24578888888654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=143.80 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=78.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccHHHHHcCCCCCCCCCH
Q 014366 217 TVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDM 294 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~~~~~ 294 (426)
.+.|.||||+||||+++++++ ++.|+.|.+.++|.+..... ..+..+++++|.+.+. +.+- .+ ..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MG----NNDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-------------CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cC----Ccch
Confidence 499999999999999999999 89999999999998765432 2256799999987642 1110 00 0111
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
..+.+.++. +.... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..
T Consensus 107 ~~~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 107 IVIQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HHHHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 122222221 11111 111111 4566 778999999999999 99999999999999876
Q ss_pred CCceEEEeccChHH
Q 014366 375 GHHTVLVIAHHLET 388 (426)
Q Consensus 375 ~~~tvi~itH~~~~ 388 (426)
++.++|++||+++.
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 67899999999754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=144.74 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=94.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHH--HhcCCCCCcc-----EEEEcCEeCCC-CCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKL--LLRLYDPLSG-----CILVDDHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~l--l~g~~~p~~G-----~I~~~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
-|++|++++|+||||||||||++. +.+..+|+.| .+++++.+... .....+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776444 88898875311 112223445665444 67788
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeeccCCCCCH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDS 360 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEpts~LD~ 360 (426)
+.+.... +.+.....+ .-++.+ -.+|+++++||||+.+|+
T Consensus 247 i~~~~~~---~~~~~~~~l-----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 247 VAYARAY---NADHQLRLL-----------------------------------DAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp EEEEECC---SHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred EEEeccC---ChHHHHHHH-----------------------------------HHHHHHHHhcCCceEEecchhhhCch
Confidence 7664321 222111111 111111 247999999999999997
Q ss_pred HHH------------HHHHHHHHHHcC--CceEEEeccCh-------------------HHHH-hcCEEEEEeCCE
Q 014366 361 RSE------------LLVRQAVDRLLG--HHTVLVIAHHL-------------------ETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 361 ~~~------------~~i~~~l~~~~~--~~tvi~itH~~-------------------~~~~-~~D~i~vl~~G~ 402 (426)
+.. ..+.+.|+++.+ +.|||+++|.. ..+. .+|.+++|++++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 533 456666766642 68999999982 1233 589999998763
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=142.86 Aligned_cols=121 Identities=20% Similarity=0.155 Sum_probs=82.0
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEc-CEeCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVD-DHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (426)
-++++++. .+|++++|+||||||||||+++|+|+.+ |+.|+|.++ |.+.. ...+..+++++|++.+++. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 56777764 4899999999999999999999999999 999999987 75532 2345679999999988865 899
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++-.. ..+.+++.+ ...++++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l~-----~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLW-----HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCC-----CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhhc-----CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 86321 223333322 122333332 55556667778999 999999999875
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-17 Score=168.00 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=114.8
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 281 (426)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222211 345777777655222 26777
Q ss_pred HHcCCCCC-------CCCCHHHHHHHHHHh--c-----------hHHHHHhc---CCCcccccC-------CCCCCCChH
Q 014366 282 NIGYRDLM-------TKIDMERVEHTARTA--N-----------ADEFVRTL---PQGYNTHIG-------PRGSSLSGG 331 (426)
Q Consensus 282 ni~~~~~~-------~~~~~~~~~~~~~~~--~-----------l~~~~~~l---p~g~~t~~~-------~~g~~LSgG 331 (426)
++....+. .+....+...+++.+ + ..+.+.++ |.|+...+. .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 66432110 011112233333322 1 22333332 223322211 123467999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEE--eccChHHHH-hcC
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLV--IAHHLETVM-MAK 393 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~--itH~~~~~~-~~D 393 (426)
|+||.++|. + | |+|||+.+...+.+.+.++.+ ++|+++ +||+++.+. .|+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 999999888777777766643 678875 899999885 564
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-17 Score=154.79 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=105.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCC-CCCc-ccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-TLFS-GTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~ti~ 280 (426)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++......+.++.+++++|++ ..++ .++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999877 79999998886655555667799999986 3444 4788
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC----
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS---- 356 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts---- 356 (426)
||+........ ..... ...+..+.++ ..|||||+||+.+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~--~~~~~------~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gR 168 (274)
T 2x8a_A 110 DEVDALCPRRS--DRETG------ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGR 168 (274)
T ss_dssp ETCTTTCC-----------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTS
T ss_pred ehhhhhhcccC--CCcch------HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCccc
Confidence 88865332111 11100 0111222222 478999999999999999999975 99974
Q ss_pred --------CCCHHHHHHHHHHHH
Q 014366 357 --------ALDSRSELLVRQAVD 371 (426)
Q Consensus 357 --------~LD~~~~~~i~~~l~ 371 (426)
--|.+.+..|++.+.
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHH
Confidence 346777777776654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-15 Score=142.57 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=82.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHh-cceEEEecCCCCC------cccHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLR-RHVGLVSQDITLF------SGTVA 280 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~ti~ 280 (426)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ +|.++..... ..+ +.+||++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9988765432 222 3699999999652 3488
Q ss_pred HHH--cCCC-----------CCCCCCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 281 ENI--GYRD-----------LMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 281 eni--~~~~-----------~~~~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+ .|+. .........+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4431 011223356788888888865 555544 579998899999987
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=122.35 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=69.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
+++++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999876 46 455444322110
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 2356899999999998 6666
Q ss_pred HHHHHHHHHHHHcC-Cce-EEEeccC
Q 014366 362 SELLVRQAVDRLLG-HHT-VLVIAHH 385 (426)
Q Consensus 362 ~~~~i~~~l~~~~~-~~t-vi~itH~ 385 (426)
.++.+.+.+.++.+ +++ +|++||.
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68888888887653 577 7888885
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=125.60 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=74.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~ 288 (426)
+|++++|+.++|+||||||||||++++++.+.|++|... .| .+..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~---------~~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YF---------FDTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CE---------EEHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EE---------EEHHHHH-----
Confidence 567789999999999999999999999999877666210 11 1111111
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHHH
Q 014366 289 MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVR 367 (426)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i~ 367 (426)
+.+... ... + ... -....+.+|++|+||||++ ++|+.....+.
T Consensus 80 ------~~~~~~---------~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 80 ------FRLKHL---------MDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ------HHHHHH---------HHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ------HHHHHH---------hcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 000000 100 0 000 0112244999999999995 89999999999
Q ss_pred HHHHHHc-CCceEEEeccCh
Q 014366 368 QAVDRLL-GHHTVLVIAHHL 386 (426)
Q Consensus 368 ~~l~~~~-~~~tvi~itH~~ 386 (426)
+.+.+.. +++++|++||..
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHHHcCCCEEEEcCCC
Confidence 9998764 578999999986
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-15 Score=147.41 Aligned_cols=91 Identities=20% Similarity=0.232 Sum_probs=75.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhcCCC--CCcc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHI-------------------RAGETVALIGPSGGGKSTLAKLLLRLYD--PLSG 244 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i-------------------~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p~~G 244 (426)
+.|+++||++.|. ++++++|+++ ++|+++||+||||||||||+++|+|+++ |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4688999999993 5899999988 8999999999999999999999999998 9999
Q ss_pred EEEE---cCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHcC
Q 014366 245 CILV---DDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGY 285 (426)
Q Consensus 245 ~I~~---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~ 285 (426)
+|.+ ||.... . ..++.++++ |+..++. .|+.+|+.+
T Consensus 112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 9999 887642 2 345668888 7766553 478887643
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-14 Score=142.50 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=94.0
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHc
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~ 284 (426)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... +...+++++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 344444332 2345777777641 1123333322
Q ss_pred CCCC---CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 285 YRDL---MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 285 ~~~~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+... ......... +..+.+. ..+.. +|-. .+...+||+||+||+++|++|+.+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl-~~~era~--~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIARTR--VLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTSSS--EEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHH-HHHHHHH--hhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2110 001111111 1111111 01110 0100 233457999999999999999999999999 999987
Q ss_pred HHHHHHHHHHH-Hc-CCceEEEecc
Q 014366 362 SELLVRQAVDR-LL-GHHTVLVIAH 384 (426)
Q Consensus 362 ~~~~i~~~l~~-~~-~~~tvi~itH 384 (426)
.. ...+.+.+ +. .+.+++++|.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 66 33344433 33 2557776654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=134.28 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=70.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhcceEEEecCCC-------------
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRRHVGLVSQDIT------------- 273 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 273 (426)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 8988865442111236899999985
Q ss_pred ---CCcc-cHHHHHcCCCCC-CCCCHHHHHHHHHHhch-HHHHHhcC
Q 014366 274 ---LFSG-TVAENIGYRDLM-TKIDMERVEHTARTANA-DEFVRTLP 314 (426)
Q Consensus 274 ---lf~~-ti~eni~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~lp 314 (426)
+|+. |+ ||+.++... ......++.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4544 88 999885321 12234568889999999 57777666
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-14 Score=131.54 Aligned_cols=181 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHH-HhcceEEEecCCCCCcc-cH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDPLSGCILVDDHDVQNIRLDS-LRRHVGLVSQDITLFSG-TV 279 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~-ti 279 (426)
...+++||++++|++++|+||||||||||+++|+ |++++ ..++.++....+.. .+..+.|.++++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-----IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C-----EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-----cccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 3678999999999999999999999999999999 99854 12333222111100 11234567776655533 44
Q ss_pred HHHHcC----CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh--HHHHHH-HHH-HHhcCCCCEEEe
Q 014366 280 AENIGY----RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG--GQRQRL-AIA-RALYQNSSVLIL 351 (426)
Q Consensus 280 ~eni~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg--GqkQRl-~iA-Ral~~~p~illl 351 (426)
.+|+.. .........+.+.+.++.. ....+.- .+.| .-+++. .-+ ..++..|+..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKG------------VSTLLVI---DWQGAFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHT------------CEEEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcC------------CeEEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHHHH
Confidence 444431 1100011112233333221 1111100 0111 113333 112 234667788889
Q ss_pred eccCCCCCHHHHHHHHHHHHHHc------CCceEEEeccChHHH-HhcCEEEEEeCCEE
Q 014366 352 DEATSALDSRSELLVRQAVDRLL------GHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403 (426)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~-~~~D~i~vl~~G~i 403 (426)
||++++.|..+++.+.+.+.+.. +....++++|+++.+ +.+++++...+++.
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKT 213 (231)
T ss_dssp HHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBG
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhcc
Confidence 99999999888887777665431 134778888888765 35666654444543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-12 Score=131.84 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=55.1
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
++.+++... ..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 2489999999999 999999999999999999999999999999999999886543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-12 Score=125.40 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=71.9
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD 287 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~ 287 (426)
++++.++|++++++|||||||||+++.|++.+.+..|+|.+.+.|.... ...++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHH-----
Confidence 3445678999999999999999999999999999989999877664210 01111
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH---HHHHHhcCCCCEEEeeccCC
Q 014366 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL---AIARALYQNSSVLILDEATS 356 (426)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl---~iARal~~~p~illlDEpts 356 (426)
+...++.. |++. ....|||+.|++ ++++|+..+|+++|+|||..
T Consensus 151 ---------L~~~~~~~-----------gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 ---------LKIWGERV-----------GATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---------HHHHHHHH-----------TCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---------HHHHHHHc-----------CCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11122221 2221 125689999999 99999999999999999974
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=118.61 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=89.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~ 292 (426)
++|++++++|||||||||+++.|++.+.+++| +++.++.+|+ +..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHH-------
Confidence 47899999999999999999999999988778 2466777766 23333333321
Q ss_pred CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH
Q 014366 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 372 (426)
..+.. |++.... ..+..-+.+++++ .+|+++|+| |+|+|+.....+.+..+-
T Consensus 156 -------~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 156 -------YAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp -------HHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred -------HHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 11111 1111111 1234456777764 899999999 999998776655554433
Q ss_pred Hc---CCceEEEe--ccChHHHH-hcCEEEEEeCCEEEE
Q 014366 373 LL---GHHTVLVI--AHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 373 ~~---~~~tvi~i--tH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
+. ...+++++ +|..+.+. .+|++..++.+.++-
T Consensus 208 l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp SCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 32 22344444 99987775 577766666676664
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=118.30 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=97.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+.++++++.|++. . ++++|+ +|++++++|+||+||||++..|++++.+..|+|.+.+.|.... .. .
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~-~----- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AA-R----- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HH-H-----
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hH-H-----
Confidence 3445666667532 1 677887 8999999999999999999999999999999999988765421 10 0
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
+.+ ....+.. |++-... +..-+..+-+|.+++++...+++
T Consensus 143 -------------~ql--------------~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 143 -------------EQL--------------RLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp -------------HHH--------------HHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCC
T ss_pred -------------HHH--------------HHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCC
Confidence 000 0001111 1111110 01123445678999999889999
Q ss_pred EEEeecc-CCCCCHHHHHHHHHHHHHHcCCceEEEec
Q 014366 348 VLILDEA-TSALDSRSELLVRQAVDRLLGHHTVLVIA 383 (426)
Q Consensus 348 illlDEp-ts~LD~~~~~~i~~~l~~~~~~~tvi~it 383 (426)
++|+||| ++++|......+.+..+......+++++.
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999 99999988888888777665555655553
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-13 Score=128.70 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=64.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhc-ceEEEecCCCCCc-----ccHH
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRR-HVGLVSQDITLFS-----GTVA 280 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~-----~ti~ 280 (426)
+++.+|++++|+||||||||||+++|+|+.+|..|+|.+ +|+..+... ++.+ .++|++|.|.+.. .|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCCH-
Confidence 456789999999999999999999999999999999999 887765432 2222 2899999997653 478
Q ss_pred HHHc--CCC-------------CCCCCCHHHHHHHHHHhchHHHH-HhcCCCcccccCCCCCCCChHHHHH
Q 014366 281 ENIG--YRD-------------LMTKIDMERVEHTARTANADEFV-RTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 281 eni~--~~~-------------~~~~~~~~~~~~~~~~~~l~~~~-~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
||+. |.. .........+.++++..++.+.. +.. ..|+.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y------------~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY------------VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH------------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH------------HHHHHHHhhc
Confidence 8883 320 01112234577888888876532 332 2566777763
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-14 Score=143.62 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=109.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCccEEEEcCEeCCCCCH-HHHhcce---EEEecCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR------------LYDPLSGCILVDDHDVQNIRL-DSLRRHV---GLVSQDITL 274 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g------------~~~p~~G~I~~~g~~i~~~~~-~~~r~~i---~~v~Q~~~l 274 (426)
++++|.+++|+|+||||||||+++|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 667999999998754321100 0001222 366677766
Q ss_pred Ccc-cHHHHHcCCCCCCCCCHHHHHHHHHHhch-HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC--CEEE
Q 014366 275 FSG-TVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS--SVLI 350 (426)
Q Consensus 275 f~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p--~ill 350 (426)
..+ |..|++ .. .....++.+.. ...+ +..-+.....+||+. +| ++.+
T Consensus 96 ~~~~s~~e~L---------~~-~fl~~ir~~d~il~Vv-------d~~~d~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 96 TKGASTGVGL---------GN-AFLSHVRAVDAIYQVV-------RAFDDAEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp CCCCCSSSSS---------CH-HHHHHHTTCSEEEEEE-------ECCCTTCSSCCSSSS------------CHHHHHHH
T ss_pred ccCCcHHHHH---------HH-HHHHHHHHHHHHHHHH-------hccccceeeeecccc------------Ccchhhhh
Confidence 643 443332 00 11111111110 0000 000012334456652 89 9999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHH-cC-CceEEEeccChHHHH-hcCEEE-EEeCC-EEEEeccc
Q 014366 351 LDEATSALDSRSELLVRQAVDRL-LG-HHTVLVIAHHLETVM-MAKRVF-LLDNG-KLEELNRS 409 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~-~~D~i~-vl~~G-~i~e~g~~ 409 (426)
+|||++.+|++..++.++.+... .. +.|+ ++|.+..+. .||++. +|++| +++..|+.
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999999999998887 54 4554 399998875 799999 99999 87765543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-12 Score=117.07 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=56.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHc
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~ 284 (426)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|+||++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57889999999999999999999999999974 588888777665544456779999999988854 7777764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-15 Score=149.66 Aligned_cols=172 Identities=22% Similarity=0.184 Sum_probs=104.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCC
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAG-------ETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNI 256 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~G-------e~~~ivG~sGsGKSTLl~ll~g~~----~p~~G~I~~~g~~i~~~ 256 (426)
++.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 334455556654 35899999999877 899999999999999999999998 67778777666554321
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
.....+..|.+++|...+++ ++.|++.........+ ..... +. +...+. +-++.. ...+...||+|+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~--~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQ--PFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCC--CeEEEE-ecCCcccCCHHH
Confidence 11111456999999887765 7888773210000000 00000 00 111111 012211 223456899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
|||++++ .+||+.+...+.+.|++..+.. -++|+.+.+
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~ 205 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAA 205 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHH
Confidence 9998655 7788888888888887653211 135666544
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.1e-14 Score=133.87 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=96.2
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 44566666653 35899999999999 99999999999999999999885 79999998776443333445568888
Q ss_pred ecCCC-CCc-ccHHHHHc-CCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 269 SQDIT-LFS-GTVAENIG-YRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 269 ~Q~~~-lf~-~ti~eni~-~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+|+.. .++ .++.||+. ++..... ...++..+. +..++ ..|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88764 343 37778873 3221100 001111111 11222 25799999999999999
Q ss_pred cCCCCEEEeeccC
Q 014366 343 YQNSSVLILDEAT 355 (426)
Q Consensus 343 ~~~p~illlDEpt 355 (426)
..+|++ +|++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 68764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=7e-12 Score=112.93 Aligned_cols=142 Identities=24% Similarity=0.177 Sum_probs=77.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEEcCEeCCC--CCHHHHhcceEEEecCCCCCc--ccHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDP-----------LSGCILVDDHDVQN--IRLDSLRRHVGLVSQDITLFS--GTVAE 281 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p-----------~~G~I~~~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~ti~e 281 (426)
+++|+|+||||||||++.++|...| ++|+|.++|.++.- ++....++..++++|...-.. .++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57999999976531 111111122233332111000 12222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
+... .+.+.+....+. .....+.... -.++.+ ..|..-..+...+||+++.+|+++++| ||++|.
T Consensus 111 ~~~~------~s~~~~~~~~~~-----~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH------LTYENVERWLKE-----LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH------HHHHTHHHHHHH-----HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH------HHHHHHHHHHHH-----HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1100 001111111111 0000010100 011111 112222223478899999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q 014366 361 RSELLVRQAVDR 372 (426)
Q Consensus 361 ~~~~~i~~~l~~ 372 (426)
.+..++.+.|.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988865
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-12 Score=120.70 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=52.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH--------
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-------- 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-------- 258 (426)
.|+++|++..|+. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5788888655521 566677 8999999999999999999999999999999999998843321
Q ss_pred HHHhcceEEEecC
Q 014366 259 DSLRRHVGLVSQD 271 (426)
Q Consensus 259 ~~~r~~i~~v~Q~ 271 (426)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2246789999985
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-13 Score=121.62 Aligned_cols=129 Identities=24% Similarity=0.252 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEE--------cCEeCCC-CCHHHHhcceEEEecCC------CCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILV--------DDHDVQN-IRLDSLRRHVGLVSQDI------TLF 275 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~I~~--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf 275 (426)
.+.+++|+|||||||||+.++|++.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999876 788999887 6776642 33456788899999976 234
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc-CCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI-GPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 276 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~-~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
..++.+++. .+++..++..+..++.+...+.+..+.+ ..++.-++|+ .++++++.+++++++.++
T Consensus 84 ~~~v~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~ 149 (227)
T 1cke_A 84 GEDVSGEIR---------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDA 149 (227)
T ss_dssp TEECHHHHT---------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEEC
T ss_pred CeeCchhhC---------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeC
Confidence 456777752 2456666666666666655444443333 2355667776 456678889999999887
Q ss_pred CC
Q 014366 355 TS 356 (426)
Q Consensus 355 ts 356 (426)
+.
T Consensus 150 ~~ 151 (227)
T 1cke_A 150 SS 151 (227)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-11 Score=110.88 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=88.6
Q ss_pred cceee-eEEEeCCCEEEEECCCCCcHHHHHH-HHhcCCCCCccEEEEcCEeCCCCCHHHHh---cceEEEecCCCCCccc
Q 014366 204 VLDQL-NLHIRAGETVALIGPSGGGKSTLAK-LLLRLYDPLSGCILVDDHDVQNIRLDSLR---RHVGLVSQDITLFSGT 278 (426)
Q Consensus 204 ~l~~i-sl~i~~Ge~~~ivG~sGsGKSTLl~-ll~g~~~p~~G~I~~~g~~i~~~~~~~~r---~~i~~v~Q~~~lf~~t 278 (426)
.|+.+ .--+++|++++|.||||||||||+. ++.+..+...+.+++++.. +..+++ ..+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46655 5568999999999999999999954 5555555544555555432 233322 235555543210
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCC
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATS 356 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts 356 (426)
.+|+.+...... .+ +. .... +....+. +....+....++.++ .+|+++++|+|++
T Consensus 83 -~~~l~~~~~~~~----~~-------~~---~~~~----~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 -KGMFAMVDAFTA----GI-------GK---SKEY----EKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp -HTSEEEEECSTT----TT-------CC-----CC----CSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred -CCcEEEEecchh----hc-------cc---cccc----ccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 011111000000 00 00 0000 0000001 111223333333333 4799999999999
Q ss_pred CC--CHHHHHHHHHHHHHH-c-CCceEEEeccChHH--------H-HhcCEEEEEeC
Q 014366 357 AL--DSRSELLVRQAVDRL-L-GHHTVLVIAHHLET--------V-MMAKRVFLLDN 400 (426)
Q Consensus 357 ~L--D~~~~~~i~~~l~~~-~-~~~tvi~itH~~~~--------~-~~~D~i~vl~~ 400 (426)
-+ |+....+....+.+. + .+.|+|+++|.... + ..||.|+.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 88 554444444445443 2 46899999998764 3 46999999964
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-13 Score=130.56 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=104.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
.+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++........++.+++
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 455677766753 35899999999999 99999999999999999999885 7899999877644333344556788
Q ss_pred EecCCC-CCc-ccHHHHH-cCCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 268 VSQDIT-LFS-GTVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 268 v~Q~~~-lf~-~ti~eni-~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
++|+.. .++ .++.||+ .++..... ...++..+. +..++ ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888764 343 3677777 33221100 001111111 11222 2578999999999999
Q ss_pred hcCCCCEEEeeccCCC------------CCHHHHHHHHHHH
Q 014366 342 LYQNSSVLILDEATSA------------LDSRSELLVRQAV 370 (426)
Q Consensus 342 l~~~p~illlDEpts~------------LD~~~~~~i~~~l 370 (426)
+..+|++ +|++.-. .|.+.+..+++..
T Consensus 160 ~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 160 ATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp EESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 9999987 7887642 3555565555543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=5.9e-10 Score=110.24 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=82.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM 289 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~ 289 (426)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. .+.+.+++.++ |+.+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~-----------~l~i~~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTD-----------SLLVSQ-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGG-----------GCEEEC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHH-----------HeEEec--
Confidence 478999999999999999999877775544334443 333321 1111 11111222111 111100
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccCCCC---------
Q 014366 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSAL--------- 358 (426)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~--p~illlDEpts~L--------- 358 (426)
..+. .|-+.++++++++ |+++++||+++-+
T Consensus 121 -------------------------------------~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 121 -------------------------------------PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp -------------------------------------CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred -------------------------------------CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 0011 2334577877765 9999999999988
Q ss_pred -CH---HHHHHHHHHHHHH----c-CCceEEEeccChH----------------HHH-hcCEEEEEeCCEEEEec
Q 014366 359 -DS---RSELLVRQAVDRL----L-GHHTVLVIAHHLE----------------TVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 359 -D~---~~~~~i~~~l~~~----~-~~~tvi~itH~~~----------------~~~-~~D~i~vl~~G~i~e~g 407 (426)
|+ ...+.+.+.++++ + .+.|||+++|-.. .++ .||.++.++.+++...|
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 32 1222344444443 2 2689999999543 244 69999999877655444
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-11 Score=114.99 Aligned_cols=72 Identities=28% Similarity=0.299 Sum_probs=61.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCC-CCCHHHHhcceEEEecCC------CC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCIL--------VDDHDVQ-NIRLDSLRRHVGLVSQDI------TL 274 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~--------~~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 274 (426)
++|++++|+|||||||||++++|+ |++.|++|.++ .+|.++. ......+++.+++++|++ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 8999884 445678889999999754 34
Q ss_pred CcccHHHHHc
Q 014366 275 FSGTVAENIG 284 (426)
Q Consensus 275 f~~ti~eni~ 284 (426)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5567878763
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-11 Score=129.87 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=104.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcceEEEecCC--------
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDI-------- 272 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~-------- 272 (426)
..+++++++.+++|+.+.|+||||||||||+++|+++.++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8888888765432 34588887754
Q ss_pred --------------CCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 273 --------------TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 273 --------------~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.+ ..++.+|+...+...... ..+.. ......+++.... . -......+|+|++|++.
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~-~~v~~--~~~~~~~L~G~~~----~-~~~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA-PFIDA--TGAHAGALLGDVR----H-DPFQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSC-CEEEC--TTCCHHHHHCEEC----C-CCC----CCCCGGGGEE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCC-CEEEc--CCCCHHhcCceEE----e-chhhcCCcccccccccc
Confidence 222 225555554322110000 00000 0111222222111 0 11122459999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 372 (426)
.++....++.+|+|||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899999999999975
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-11 Score=122.29 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=92.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc---cc--
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS---GT-- 278 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~---~t-- 278 (426)
+.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. ..
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMK 230 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHH
Confidence 35789999999999999999999999999876 67777788888877766432222211 122211 01
Q ss_pred -HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH----------HHHHHhcCCCC
Q 014366 279 -VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL----------AIARALYQNSS 347 (426)
Q Consensus 279 -i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl----------~iARal~~~p~ 347 (426)
+.+.+.... . .-++-.+.++..++.++. +|+..+ ...+|+||+||. ++|+++...|.
T Consensus 231 ~a~~~L~~~~---~-EmerR~~ll~~~Gv~~i~-----~yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 231 DAANALRWCV---N-EMERRYKLMSALGVRNLA-----GYNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHHHH---H-HHHHHHHHHHHTTCSSHH-----HHHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHHHH---H-HHHHHHHHHHHcCCccHH-----HHHHHH---HHHhhcCCcccccccccccchhccccccccCCc
Confidence 111111000 0 001111222222221111 000000 124678887752 46777888898
Q ss_pred -EEEeeccCCCCCHHHHHHHHHHHHHH----c-CCceEEEeccChH
Q 014366 348 -VLILDEATSALDSRSELLVRQAVDRL----L-GHHTVLVIAHHLE 387 (426)
Q Consensus 348 -illlDEpts~LD~~~~~~i~~~l~~~----~-~~~tvi~itH~~~ 387 (426)
++++||+++-+|.. .+.+.+.+.++ + .+.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78899999988843 23444544433 2 2569999999987
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9e-11 Score=120.22 Aligned_cols=177 Identities=11% Similarity=0.089 Sum_probs=107.7
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcce-EEEecCCCCCcccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHV-GLVSQDITLFSGTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~ti~ 280 (426)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+..++..++ +.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC------CCH-
Confidence 368888877999999999999999999999999987766445 56665432 3444444331 11110 001
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCC
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSAL 358 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~L 358 (426)
+.+..+. .++++..+..+. .+.+...| -.+.+ ...+|.+|.+ +.+|.+. .+|+++++|+++.-.
T Consensus 261 ~~l~~g~----l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 261 QNLRTGK----LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHTSC----CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HHHhcCC----CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 1222221 223332222221 12222222 11222 3578999876 5667776 579999999999977
Q ss_pred CH--------HHHHHHHHHHHHHcC--CceEEEecc---------C--hH--------HHH-hcCEEEEEeCCEE
Q 014366 359 DS--------RSELLVRQAVDRLLG--HHTVLVIAH---------H--LE--------TVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 359 D~--------~~~~~i~~~l~~~~~--~~tvi~itH---------~--~~--------~~~-~~D~i~vl~~G~i 403 (426)
+. .....+.+.|+.+.+ +.+||+++| + +. .+. .||.|++|..++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 222455666666542 679999999 2 32 343 6999999987654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.5e-10 Score=99.57 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 373 (426)
...||+++.+|++.++| ||++|.....++.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999998888887653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-11 Score=122.39 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=87.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
.+++++|+++++|++++|+||||||||||+++|+|.+ +|.+...+ .. ...++..++++||...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999954 67776511 11 112233478888887542 233
Q ss_pred HcCCCC-CCCC-CHHHHHHHHHHhchHHHHHh---------cCCCcc-----cccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 283 IGYRDL-MTKI-DMERVEHTARTANADEFVRT---------LPQGYN-----THIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 283 i~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~---------lp~g~~-----t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+..... .... ...... ....+.+.++. .|+-++ -.+..+...+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 0000 000000 11123333321 011111 1234456778999999999998889999
Q ss_pred CEEE-eeccCC
Q 014366 347 SVLI-LDEATS 356 (426)
Q Consensus 347 ~ill-lDEpts 356 (426)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-09 Score=117.06 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=92.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~ 286 (426)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.+....+.++.+++.+|...++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987665 77988 788888888888888899999999888777777776421
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHH
Q 014366 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366 (426)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i 366 (426)
....++ ..+... ..-..++-++++| |+.++|+.++..+
T Consensus 82 pG~~~f-~~~~~~----------------------------------------~l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGEIRG----------------------------------------ALEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHHHHH----------------------------------------HHHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHHHHH----------------------------------------HHhhcCcEEEEEc-CCcccchhHHHHH
Confidence 111010 011111 1113456688888 8889888877443
Q ss_pred HHHHHHHcCCceEEEeccChHH
Q 014366 367 RQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 367 ~~~l~~~~~~~tvi~itH~~~~ 388 (426)
. .+.+ .+.++|++.|.++.
T Consensus 120 ~-~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 T-VAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp H-HHHH--TTCCEEEEEECGGG
T ss_pred H-HHHH--ccCCEEEEecCCch
Confidence 3 3332 25677788888764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-10 Score=101.26 Aligned_cols=83 Identities=27% Similarity=0.374 Sum_probs=63.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 275 (426)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+...++..++++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999886 67787 689888778888887765 5888888
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHH
Q 014366 276 SGTVAENIGYRDLMTKIDMERVEHTAR 302 (426)
Q Consensus 276 ~~ti~eni~~~~~~~~~~~~~~~~~~~ 302 (426)
..++.+| .||. +.+.++++++
T Consensus 88 ~~~~~~n-~YGt-----~~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGT-----KFETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEE-----EHHHHHHHHH
T ss_pred hhhhhce-eccc-----chhhHHHHHh
Confidence 8999999 4653 3444555444
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-09 Score=98.89 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=48.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
.++.++|++++|+|||||||||++++|++.+ |.+.++|.++... ....+...++++|++..+.. ++.+|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 4567899999999999999999999999987 8999999776431 11122346888887655432 555554
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-09 Score=97.91 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=47.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEE----------cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV----------DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
+|++++|+||||||||||+++|++++++ ..|.|.. +|.++...+...+++ .+.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~---~~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ---DISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHH---HHHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHH---HHHcCCceEEEEEcCc
Confidence 6999999999999999999999999874 4555543 444444444445443 2446666677788887
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-08 Score=104.01 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=75.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
.++++++.+++| +.|+||+|+|||||++++++.... . ++..+..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~---------f~~is~~~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------P---------FFHISGSDFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------C---------EEEEEGGGTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------C---------eeeCCHHHHH
Confidence 567777778877 889999999999999999983210 0 0111111111
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC--------
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT-------- 355 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt-------- 355 (426)
.. + +| .|++++|-.+++|....|.+|++||+.
T Consensus 87 ~~---------------------------~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 87 EL---------------------------F-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp TC---------------------------C-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred HH---------------------------H-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 00 0 01 267889999999999999999999994
Q ss_pred --CCCCHHHHHHHHHHHHHHc-----CCceEEEeccChHHH
Q 014366 356 --SALDSRSELLVRQAVDRLL-----GHHTVLVIAHHLETV 389 (426)
Q Consensus 356 --s~LD~~~~~~i~~~l~~~~-----~~~tvi~itH~~~~~ 389 (426)
++.|.+.++.+.+.+..+. .+..||.+||+++.+
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4677776666666665542 245788899998654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-09 Score=102.69 Aligned_cols=52 Identities=19% Similarity=0.405 Sum_probs=35.6
Q ss_pred cEEEEeE-EEEeCCCCCCcceeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 187 DVKFCNI-SFKYADNMPLVLDQLNLHIRA---GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 187 ~i~~~~v-~~~y~~~~~~~l~~isl~i~~---Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+ +|+|++. .++|+++||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9999332 4699999999999 9999999999999999999999854
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-09 Score=94.27 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=41.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 275 (426)
+++++|++++|+|||||||||++++|++++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 212 22222211 11123478888876543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-08 Score=100.85 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=82.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC----CcccHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD-----------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL----FSGTVAE 281 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~-----------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~ti~e 281 (426)
+++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.+.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999875 67799999987652 23346666654431 2222 22
Q ss_pred HH------cCCCCCCCCCHHHHHHHHHHhchHHHHHhcC-CCcc-cccCCCCCCCChHHHHHHHHH----HHh-cCCCCE
Q 014366 282 NI------GYRDLMTKIDMERVEHTARTANADEFVRTLP-QGYN-THIGPRGSSLSGGQRQRLAIA----RAL-YQNSSV 348 (426)
Q Consensus 282 ni------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp-~g~~-t~~~~~g~~LSgGqkQRl~iA----Ral-~~~p~i 348 (426)
.+ .+.....+ ......+..+ ...+.+..+. .+.. -.+..+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~-~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTF-SENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGGSSEEEEEEETTS-CHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHhCCEEEEEEECCC-CcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 22 21111111 1100111111 1112222221 0111 122334456788899988877 666 545555
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHH
Q 014366 349 LILDEATSALDSRSELLVRQAVDRL 373 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~ 373 (426)
+|+|++|......+.+.|.+.
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHH
Confidence 899999999999999888765
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.2e-10 Score=113.61 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=96.1
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++++...|.+ +.+++++++++++| +.|+||||+|||||+++|++... .+.+.+++.++.+.......+++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34555544543 34789999999999 99999999999999999999875 78999999887654433445567788
Q ss_pred ecCCC-CCcc-cHHHHHc-CCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 269 SQDIT-LFSG-TVAENIG-YRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 269 ~Q~~~-lf~~-ti~eni~-~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+|... ..+. .+.|++. ++..... ...++..+.+ ..++ ..|||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL---------------~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHH---------------HHGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHH---------------HHhcccccCccEEEEEe
Confidence 88874 3333 6677773 3321110 0112222221 1222 24678888898999999
Q ss_pred cCCCCEEEeeccCCC
Q 014366 343 YQNSSVLILDEATSA 357 (426)
Q Consensus 343 ~~~p~illlDEpts~ 357 (426)
..+|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999987 8888753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-09 Score=112.49 Aligned_cols=70 Identities=34% Similarity=0.477 Sum_probs=52.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEE-EcCEeCCC-------CCHH---HHhcceEEEecCCCCCccc
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CIL-VDDHDVQN-------IRLD---SLRRHVGLVSQDITLFSGT 278 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~-~~g~~i~~-------~~~~---~~r~~i~~v~Q~~~lf~~t 278 (426)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++.. ++.. .+++.+++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999987 774 88876532 2221 2345678888762 4
Q ss_pred HHHHHcC
Q 014366 279 VAENIGY 285 (426)
Q Consensus 279 i~eni~~ 285 (426)
..+|+.+
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 4555544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-09 Score=101.79 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=55.5
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH-----hcceEEE-ecCCCC
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSL-----RRHVGLV-SQDITL 274 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~l 274 (426)
++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|...... ..+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 457788889999999999999999999999999999999999998888754321 234 4568888 665433
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-10 Score=100.91 Aligned_cols=61 Identities=30% Similarity=0.378 Sum_probs=45.8
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE--EEcCEeCC
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI--LVDDHDVQ 254 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I--~~~g~~i~ 254 (426)
+|++..++. ....+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355555543 346778888889999999999999999999999999987 77988 88876553
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.1e-09 Score=94.28 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=41.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhc
Confidence 678899999999999999999999999874 37899999888765 55544
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-08 Score=99.91 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=43.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcceEEEecCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDDHDVQNIRLDSLRRHVGLVSQDI 272 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-~~~g~~i~~~~~~~~r~~i~~v~Q~~ 272 (426)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 388999999999999999999999999887777765 66654322 2 22445567666543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.57 E-value=9.1e-09 Score=91.44 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=47.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE--eCCCCCH----HHHhcceEEEecCCC
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH--DVQNIRL----DSLRRHVGLVSQDIT 273 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~--~i~~~~~----~~~r~~i~~v~Q~~~ 273 (426)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6889999999 99999999999999999999988887765432221 1110000 012456999999864
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-08 Score=94.85 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=35.1
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDD 250 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g 250 (426)
.+|++++++++ .++++|++|||||||++.|.| ++++.+|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999998 999999999999999999999 7777777765443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=5e-08 Score=106.07 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHHHHHHHHHcC-CceEEE-eccChHHHH-hcC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVRQAVDRLLG-HHTVLV-IAHHLETVM-MAK 393 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~~~~~~-~~D 393 (426)
..-+|+|+.+|..++++++.+++++|+|||.. +||......+.+.+.+... .+++++ +||+.+.+. .++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 45679999999999999999999999999997 9998877677776666554 357777 599987664 554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-07 Score=85.71 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH---HhcCEEEEEeC
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV---MMAKRVFLLDN 400 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~---~~~D~i~vl~~ 400 (426)
.+.|+.+|..+++.+..+|+.+-.+ ++.++|...+.+.+.+.... +.++|+-+|.+... ..||++++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~-~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT-APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC-SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC-CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999999888754333 34567777766666665432 45788888887543 47999999864
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.9e-07 Score=88.32 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEee-ccCCCCCHHHHHHHHHHHHHHcCCceEEEec--cChH
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILD-EATSALDSRSELLVRQAVDRLLGHHTVLVIA--HHLE 387 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~~~ 387 (426)
...+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+..+|+|. ||+.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3578999999887 66666777888999 9999999998888888887765467888888 7763
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-07 Score=85.30 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=24.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999766
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.3e-08 Score=88.82 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEE
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCI 246 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I 246 (426)
++|++++|+||||||||||++.|++.++| ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 58999999999999999999999999987 33333
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-06 Score=83.00 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=64.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|+.=+ .+..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSlE-----ms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSLE-----MSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEESS-----SCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeCC-----CCHHHHH
Confidence 4555555689999999999999999999988775443222222 332211 1111100
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L 358 (426)
.++........+.++.. ..||.+++||++.|...+.+++++|.|+|...+
T Consensus 91 -----------~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si 140 (338)
T 4a1f_A 91 -----------LRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI 140 (338)
T ss_dssp -----------HHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred -----------HHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence 11111111222222221 268999999999998888888999999886543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.1e-08 Score=84.65 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=33.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88899886654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-07 Score=84.66 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=39.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
.++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 5689999999999999999999999999988999988776654433
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=88.52 Aligned_cols=161 Identities=18% Similarity=0.116 Sum_probs=89.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcceEEEe
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVGLVS 269 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i~~v~ 269 (426)
+++++.|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 80 ~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~----- 148 (425)
T 2ffh_A 80 EALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL----- 148 (425)
T ss_dssp HHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-----
T ss_pred HHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-----
Confidence 3455556432 1 567777 89999999999999999999999999999999999887765422111 1110
Q ss_pred cCCCCCcccHHHHHcCCCCCCCCCHHHH-HHHHHHhchHHHHHhc-CCCcccccCCCCCCCC---hHHHHHHHHHHHhcC
Q 014366 270 QDITLFSGTVAENIGYRDLMTKIDMERV-EHTARTANADEFVRTL-PQGYNTHIGPRGSSLS---GGQRQRLAIARALYQ 344 (426)
Q Consensus 270 Q~~~lf~~ti~eni~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l-p~g~~t~~~~~g~~LS---gGqkQRl~iARal~~ 344 (426)
.-..|+.+.......+..++ .++ ++.+ ..++|..+=+.+..++ .-..+...+++++..
T Consensus 149 --------~~~~gv~v~~~~~~~~p~~i~~~~---------l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 --------GEKVGVPVLEVMDGESPESIRRRV---------EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp --------HHHHTCCEEECCTTCCHHHHHHHH---------HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred --------cccCCccEEecCCCCCHHHHHHHH---------HHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 00112211000011123332 112 2222 1366654433222332 346777788888866
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEecc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAH 384 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 384 (426)
++-++++| ++++.|.... .+.+.+. -+.+-+++|+
T Consensus 212 d~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 66677788 5566554422 2233221 1346666665
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.3e-07 Score=84.85 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=48.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHH----HhcceEEEecCCCCCc
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDS----LRRHVGLVSQDITLFS 276 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf~ 276 (426)
.+.++|++++|.|+|||||||++++|.|+ .|+|.+.+.+.... .... .++.+++++|.+.++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 35579999999999999999999999998 78899998875321 1111 1346788898876553
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.21 E-value=6e-06 Score=81.50 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=34.1
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc----CCceEEEeccChHHH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL----GHHTVLVIAHHLETV 389 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~ 389 (426)
.+|.++++||+... |......+.+.+.+.. .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 8887777777775543 356888999998543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=87.51 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
++.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5689999999999999999999999998888888766553
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-07 Score=91.83 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=49.3
Q ss_pred CccEEEEeEEEEeCCCCCCcce--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 185 NGDVKFCNISFKYADNMPLVLD--------------QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~--------------~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.+.|+||++.|+.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4579999999999975 46888 899999999999999999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.7e-07 Score=88.90 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.9
Q ss_pred cceeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhcCCC--CCccEE
Q 014366 204 VLDQLNLHIRAGE------TVALIGPSGGGKSTLAKLLLRLYD--PLSGCI 246 (426)
Q Consensus 204 ~l~~isl~i~~Ge------~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~I 246 (426)
.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 5666666666555 999999999999999999999987 444543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-06 Score=85.01 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999999999888754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.9e-05 Score=71.38 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH----------HHHHHHHHHHHHcC-----CceEEEeccChHH-----
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSR----------SELLVRQAVDRLLG-----HHTVLVIAHHLET----- 388 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~----------~~~~i~~~l~~~~~-----~~tvi~itH~~~~----- 388 (426)
++++++|..++++...+|.++++||+.+-++.. ....+...+..... +..+|.+|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 357778888888888899999999998876542 22234444443321 2356778887643
Q ss_pred HHhcCEEEEEe
Q 014366 389 VMMAKRVFLLD 399 (426)
Q Consensus 389 ~~~~D~i~vl~ 399 (426)
...+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 23577766553
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.7e-06 Score=82.65 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988874
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1.2e-06 Score=91.63 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=48.7
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
++++...|.. ..+++++++++ +|+.++|+||||+|||||+++|++...+..|.|.++|...........++.+|+.+
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 3455555532 24678888888 89999999999999999999999999999999988874321111122234566666
Q ss_pred cCC
Q 014366 270 QDI 272 (426)
Q Consensus 270 Q~~ 272 (426)
|..
T Consensus 163 ~~~ 165 (543)
T 3m6a_A 163 GRI 165 (543)
T ss_dssp -CH
T ss_pred hHH
Confidence 543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=81.46 Aligned_cols=67 Identities=9% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCCCEEEeeccCCCCCH-HHHHHHHHHHHHHc-CCceEEEeccCh-HHHH-hcCEEEE-EeCCEEEEecccc
Q 014366 344 QNSSVLILDEATSALDS-RSELLVRQAVDRLL-GHHTVLVIAHHL-ETVM-MAKRVFL-LDNGKLEELNRST 410 (426)
Q Consensus 344 ~~p~illlDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~~-~~~~-~~D~i~v-l~~G~i~e~g~~~ 410 (426)
.+|++|++||+..-.+. .++..+...+..+. .++.+|++||+. ..+. ..+++.- ++.|.+++.++|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887765 57777888887764 467889999984 3221 1222221 3456666665553
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-06 Score=85.22 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=37.4
Q ss_pred CcceeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~--~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488899999999998 999999999999999999998766544
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=7.1e-05 Score=69.13 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccE
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 245 (426)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977666553
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=7.1e-06 Score=83.33 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=42.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
.++|+|+||+|||||++.|+|... |.+|.+.++|.++.-++..-.++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 6789999999876544444445555555566555543 444454
Q ss_pred c
Q 014366 284 G 284 (426)
Q Consensus 284 ~ 284 (426)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.3e-06 Score=75.56 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=33.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDV 253 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~i 253 (426)
++|++++|+|++||||||+.++|.+.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666776444
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.7e-05 Score=73.78 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=28.9
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.|+++.--+++|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666665689999999999999999999887764
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=6e-06 Score=72.17 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.|++++|+|+|||||||++++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.5e-06 Score=85.38 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=46.2
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888887666553
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.8e-06 Score=81.26 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.78 E-value=5.9e-06 Score=76.49 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=32.3
Q ss_pred ceeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 014366 205 LDQLNLHIR---AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (426)
Q Consensus 205 l~~isl~i~---~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~ 249 (426)
|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 8999999999999999999999999987 6666543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=77.61 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~ 292 (426)
++.+++|+|++|+|||||++.|.|.. +.+ .+.+ .....+..++++++..-+ ++.|. ++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i--~~iDT-------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQA--IYVDT-------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEE--EEESS-------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeE--EEEEC-------cCC
Confidence 34489999999999999999999863 211 1111 011234467777754311 11110 011
Q ss_pred CHHHHHHHHHHhchHHHHHhcCC---Ccccc---cCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCCCHHH-H
Q 014366 293 DMERVEHTARTANADEFVRTLPQ---GYNTH---IGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSALDSRS-E 363 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~---g~~t~---~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~LD~~~-~ 363 (426)
.. +....+.. ++...... ..|.. ++. ..+|+|++ .+++.+. ..|.++++ +-+|... +
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccH
Confidence 10 00111110 11111111 12211 222 23898886 5566665 67888888 7888776 5
Q ss_pred HHHHHHHHHHcC--C--ceEEEeccChHHH
Q 014366 364 LLVRQAVDRLLG--H--HTVLVIAHHLETV 389 (426)
Q Consensus 364 ~~i~~~l~~~~~--~--~tvi~itH~~~~~ 389 (426)
..+.+.+.++.+ + ..+.+++|+-.-+
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 666677766543 2 3566667765443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.7e-06 Score=81.04 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=36.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
+++.+++|+|++|||||||++.|+|.+.|.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 356799999999999999999999999888898888776654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=3.6e-06 Score=76.56 Aligned_cols=43 Identities=33% Similarity=0.263 Sum_probs=37.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEe
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHD 252 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~ 252 (426)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 44678999999999999999999999999988888 88887533
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=67.89 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=25.1
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999987
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.9e-05 Score=71.80 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=76.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHcCCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMT 290 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~ 290 (426)
+.+|+.+.++||+||||||++.++........|. ...+.++.+.|.... .++.+|+......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4578999999999999999888664321111110 124567777776543 3677776421110
Q ss_pred CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC---CCCCChHHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHH
Q 014366 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPR---GSSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLV 366 (426)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~---g~~LSgGqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i 366 (426)
... ...+.. ...+...... ..-.+.|.-.+.. +..+.+-+++|+||+-. ++|.......
T Consensus 136 ~~~--------~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 136 EPG--------KSCGYS-------VRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp CTT--------SSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred ccC--------ceEEEe-------echhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHH
Confidence 000 000000 0001111000 1112456655553 44689999999999976 5777766444
Q ss_pred HHHHHHHcCC-ceEEEe-ccChHHH
Q 014366 367 RQAVDRLLGH-HTVLVI-AHHLETV 389 (426)
Q Consensus 367 ~~~l~~~~~~-~tvi~i-tH~~~~~ 389 (426)
.+.+.....+ +++++. |...+.+
T Consensus 199 l~~i~~~~~~~~~il~SAT~~~~~~ 223 (235)
T 3llm_A 199 LRDVVQAYPEVRIVLMSATIDTSMF 223 (235)
T ss_dssp HHHHHHHCTTSEEEEEECSSCCHHH
T ss_pred HHHHHhhCCCCeEEEEecCCCHHHH
Confidence 4444444333 455544 5555444
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=8.1e-06 Score=73.25 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=38.6
Q ss_pred EEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC----C----CCCccEEEEcCEe
Q 014366 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL----Y----DPLSGCILVDDHD 252 (426)
Q Consensus 194 ~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~----~----~p~~G~I~~~g~~ 252 (426)
+++|++- ..+++++|++.+++ .++++|++|+|||||++.+.+- + .++.+.+.++|..
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 4567654 35899999988887 6899999999999999999862 2 2345666666643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=7.8e-05 Score=72.15 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.+..+.|.||+|+|||||++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999986643
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.61 E-value=8.4e-06 Score=73.68 Aligned_cols=30 Identities=37% Similarity=0.544 Sum_probs=26.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
...+|.+++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=4.6e-05 Score=72.97 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
..+.|+||+|+||||+++.|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=4.5e-05 Score=67.78 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=27.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc----CCCC----CccEEEEcCE
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDP----LSGCILVDDH 251 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g----~~~p----~~G~I~~~g~ 251 (426)
+++++|++.++. .++++|++|+|||||++.+.+ .+.| +.+.+.++|.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 788999988877 889999999999999999987 2223 3455566654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.58 E-value=8e-05 Score=66.73 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999976543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.57 E-value=4.7e-05 Score=66.55 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.9e-06 Score=76.24 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=43.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCCCCC-HHHHhcceEEEec------CCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCIL--------VDDHDVQNIR-LDSLRRHVGLVSQ------DITLF 275 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~--------~~g~~i~~~~-~~~~r~~i~~v~Q------~~~lf 275 (426)
..-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.++.+.. ..++.+.+.+.++ ..+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 55556666662 3455544321 2344455666663 23333
Q ss_pred cccHHHHH
Q 014366 276 SGTVAENI 283 (426)
Q Consensus 276 ~~ti~eni 283 (426)
...|.++|
T Consensus 88 g~~v~~~i 95 (233)
T 3r20_A 88 GEDVSSEI 95 (233)
T ss_dssp TEECTTGG
T ss_pred Ceehhhhh
Confidence 44565555
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=70.37 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999999999865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.51 E-value=1.6e-05 Score=77.46 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=33.8
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
++.++++|| ...+++.....+.+.+.+......+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6789999888898888876555567777777653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0002 Score=67.59 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=24.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++++..+.|.||+|+||||+++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.47 E-value=1.4e-05 Score=77.05 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=41.3
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~ 255 (426)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 667766 99999999999999999999999999888999988777643
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.44 E-value=4.8e-05 Score=69.47 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987554
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00065 Score=66.93 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+++.|.|++|+|||||...++.-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999997776543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=6.4e-05 Score=66.69 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.7
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.38 E-value=5e-05 Score=67.28 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=32.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EEcC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDD 250 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-~~~g 250 (426)
..+|.++.|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45789999999999999999999999887777765 3443
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=66.64 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666665 99999999999999999875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00025 Score=64.13 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=33.7
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999866 78888888877776544456788888886543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.30 E-value=1.1e-07 Score=90.09 Aligned_cols=73 Identities=18% Similarity=0.067 Sum_probs=63.2
Q ss_pred cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE--EEeeccCCCCCHHH---------HHHHHHHHHHHcCCceEEE
Q 014366 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSRS---------ELLVRQAVDRLLGHHTVLV 381 (426)
Q Consensus 313 lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i--lllDEpts~LD~~~---------~~~i~~~l~~~~~~~tvi~ 381 (426)
++.++++.+++++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..+.+.++...+++|.+.
T Consensus 158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~ 235 (261)
T 2eyu_A 158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE 235 (261)
T ss_dssp HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHH
T ss_pred HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHH
Confidence 4558999999999999999 999999999999999 99999999999873 3456777777778999999
Q ss_pred eccChH
Q 014366 382 IAHHLE 387 (426)
Q Consensus 382 itH~~~ 387 (426)
++||+.
T Consensus 236 ~a~r~~ 241 (261)
T 2eyu_A 236 DAMEAS 241 (261)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999874
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00023 Score=61.37 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=1.8e-05 Score=78.30 Aligned_cols=58 Identities=26% Similarity=0.238 Sum_probs=36.4
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.+.+.++|++..|... .++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3568889998888643 4789999876 99999999999999999987666555544433
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=72.89 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=34.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCccEEEEcCE
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRL-----------YDPLSGCILVDDH 251 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~-----------~~p~~G~I~~~g~ 251 (426)
.+..|..++|+|++|+|||||++.|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788888887663
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=63.38 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.001 Score=56.42 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.4
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH 385 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 385 (426)
+..+|++||.- .|++..+..+.+.+.....+..+|.+|++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 34689999984 68888888888888554444566777765
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.22 E-value=7.7e-05 Score=66.95 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=27.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~ 252 (426)
..+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999998876 445555433
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00016 Score=64.91 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00014 Score=72.11 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
+.+|+++|..+|+++++|||+ |+++.. ..++....+.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 776543 3444444578999999997755567776443
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00015 Score=64.06 Aligned_cols=38 Identities=34% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEe
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHD 252 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~ 252 (426)
-..++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3677776644
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.11 E-value=9.1e-05 Score=69.30 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=32.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
..+++..+.|+|++||||||+.+.|...+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 455678999999999999999999998774 35677777544
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00025 Score=62.37 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00022 Score=66.44 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=29.2
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~ 252 (426)
.++++++..++| +.|+||+|+||||+++.+++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 344445555555 8999999999999999999876422 35555543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00047 Score=70.16 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 47777788888889999888765544 34444 4456666654 357788888877654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0003 Score=61.85 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=70.35 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=44.7
Q ss_pred CCCCEEEeeccCCCCC---HHHHHHHHHHHHHHcC-CceEEEeccChHHH-------------HhcCEEEEEeCC
Q 014366 344 QNSSVLILDEATSALD---SRSELLVRQAVDRLLG-HHTVLVIAHHLETV-------------MMAKRVFLLDNG 401 (426)
Q Consensus 344 ~~p~illlDEpts~LD---~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~-------------~~~D~i~vl~~G 401 (426)
..|.++++||.=.-++ +.....+.+.+++.++ +..++++||+++.+ ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3588999999988885 6677778888877754 67899999998644 347777777654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0036 Score=57.91 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..-+.|.||+|+||||+++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999998754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0001 Score=72.28 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=33.0
Q ss_pred CcceeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCC
Q 014366 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~--~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888888999998 9999999999999999998754
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00055 Score=59.70 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998664
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0005 Score=63.32 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=27.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc---CCCCCccEE
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLR---LYDPLSGCI 246 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g---~~~p~~G~I 246 (426)
-++|.+++|+|++||||||+.+.|++ +..++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 45789999999999999999999986 333444544
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00054 Score=67.80 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.1
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++..+++.+| +.+|+|||||||||++..|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888776 99999999999999999876
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0095 Score=56.57 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999888765
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0012 Score=58.03 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=27.3
Q ss_pred EEEEECCCCCcHHHHHHHHh-cC----CCCCcc----EEEEcCEe
Q 014366 217 TVALIGPSGGGKSTLAKLLL-RL----YDPLSG----CILVDDHD 252 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~-g~----~~p~~G----~I~~~g~~ 252 (426)
.++|+|++|+|||||++.+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 69999999999999996554 44 567766 56666643
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0006 Score=58.85 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.004 Score=61.10 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0014 Score=64.02 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+..+.|.||+|+||||+++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999987653
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00063 Score=60.50 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0041 Score=60.73 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=29.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.+|..+.|.||+|+||||+++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 35678999999999999999999987754434445444
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0006 Score=60.68 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=26.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
..+++|+|++||||||+.+.|+.. |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6666654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0002 Score=64.50 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887644
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0008 Score=59.11 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|.++.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0018 Score=65.56 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=80.7
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+.+-. .+.+..++..++- .+...+-...++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s---lE~~~~~l~~R~~--~~~~~i~~~~l~~- 262 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS---LEMPAAQLTLRMM--CSEARIDMNRVRL- 262 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE---SSSCHHHHHHHHH--HHHTTCCTTTCCG-
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE---CCCCHHHHHHHHH--HHHcCCCHHHHhC-
Confidence 46666655899999999999999999999877765433222 333321 1234444433210 0000000000110
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCCCH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSALDS 360 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~LD~ 360 (426)
+ ..++++..+..+.. +.+...|- .+.+ ...+|..+- .+.+|.+. .+|+++++|..+.-.+.
T Consensus 263 ---g----~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 263 ---G----QLTDRDFSRLVDVA---SRLSEAPI----YIDD-TPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp ---G----GCCHHHHHHHHHHH---HHHHTSCE----EEEC-CTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred ---C----CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 1 12333332222221 22322221 1111 235666543 45566665 47999999999865433
Q ss_pred ------HH-H---HHHHHHHHHHcCCceEEEec
Q 014366 361 ------RS-E---LLVRQAVDRLLGHHTVLVIA 383 (426)
Q Consensus 361 ------~~-~---~~i~~~l~~~~~~~tvi~it 383 (426)
.+ . ..+.+.|+.+.+..-+-++.
T Consensus 326 ~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 358 (444)
T 2q6t_A 326 GSGKSGENRQQEIAAISRGLKALARELGIPIIA 358 (444)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 12 2 34555566666667788883
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0021 Score=59.00 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccC-----------hHHHHhcCEEEEEe
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH-----------LETVMMAKRVFLLD 399 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------~~~~~~~D~i~vl~ 399 (426)
+|+++++||.-- |+.+.-+ +...+.+ .+.+||++-|+ .+.+..||+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 7655322 2233333 37899999992 23456899999864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0066 Score=61.32 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
++.+++++|++|+||||++.-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45699999999999999999999877654344544
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0036 Score=55.59 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
.++.++++||. ..++......+.+.+.+...+..+|++|++..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 36889999996 45777777778888776544556777777664
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00087 Score=60.69 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
++-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0014 Score=64.58 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------CCCCCccEEEEcC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR-----------LYDPLSGCILVDD 250 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g-----------~~~p~~G~I~~~g 250 (426)
|-.++|+|.+|+|||||++.|++ -..|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3457788887765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00094 Score=57.45 Aligned_cols=19 Identities=47% Similarity=0.758 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 014366 217 TVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll 235 (426)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00079 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++|.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=58.33 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998644
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.018 Score=55.57 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355679999999999999999999865
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=58.81 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+|.+++|.|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00098 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=63.28 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
+|..+.|.|||||||||+.+.|..-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 466899999999999999999987553 35566654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00093 Score=59.63 Aligned_cols=42 Identities=38% Similarity=0.665 Sum_probs=28.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCC-------------CCCccEEEEcCEeCCCCCHHHH
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY-------------DPLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~-------------~p~~G~I~~~g~~i~~~~~~~~ 261 (426)
+.|+||||||||||++.|..-+ +|..|++ ||++.--++.++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF 58 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEF 58 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHH
Confidence 7899999999999999887443 2344543 5665554555444
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=63.95 Aligned_cols=47 Identities=28% Similarity=0.200 Sum_probs=36.1
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc----CCCCCccEEEEcC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDPLSGCILVDD 250 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g----~~~p~~G~I~~~g 250 (426)
..+++..+.+ .|.-++|.|+||+||||+...+.+ +...+...|...+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 3677777877 788999999999999999998886 4444555554433
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=57.69 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998443
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0012 Score=61.63 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0098 Score=60.22 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.9
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-|+.+.--+++|+.+.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3454443589999999999999999999866654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0012 Score=57.52 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=58.44 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=58.12 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+|.+++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876643
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=56.38 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999987
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=58.27 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|.+++|.|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998643
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0037 Score=60.50 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-+++|..+.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999999998874
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.016 Score=58.04 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-++..++.|+|++||||||+.+.|+.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999987643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0013 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.+++|+|++|||||||+..|.+.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999887654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=56.76 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=18.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++.++.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357799999999999999999998544
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0022 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0018 Score=57.27 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++++.+++|.|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0022 Score=60.27 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEE
Q 014366 354 ATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRV 395 (426)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i 395 (426)
|||+.+......+.+.+.+... ..+..+..|..+.+. .++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHH
Confidence 9999999998888888876532 334455667766554 45554
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=56.78 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0031 Score=57.16 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++|-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=56.30 Aligned_cols=22 Identities=55% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0056 Score=52.03 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0037 Score=55.70 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+-+++|+|+.||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=57.39 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999864
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.012 Score=57.17 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=31.7
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
++.++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999964 57888888888887664445567778887653
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0033 Score=56.57 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0038 Score=53.89 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999997643
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0034 Score=53.26 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0031 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=53.32 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=53.49 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0034 Score=54.18 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998644
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.035 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999988877654444444
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0039 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0033 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.004 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0041 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0042 Score=52.93 Aligned_cols=23 Identities=52% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998644
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0033 Score=57.04 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.004 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.018 Score=62.25 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.+.||+|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999875
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0037 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0041 Score=58.73 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0043 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0044 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
-+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0053 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0041 Score=61.42 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.013 Score=49.31 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=28.4
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHH 385 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 385 (426)
++.++++||.- .+++..+..+.+.+.+.. .+..+|.+|++
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 35689999975 578888888888887753 23456666654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0046 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0023 Score=61.06 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0046 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999887643
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0047 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0045 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0044 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998644
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0044 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0049 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0047 Score=57.71 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++.++.|+|++||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999865
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0051 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.++++|++|+|||||++.+.|-..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0047 Score=57.32 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997743
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0044 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
--.++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0047 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0097 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=56.90 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++-+++|.|++||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999997544
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0046 Score=53.94 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0055 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0058 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0058 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0058 Score=53.56 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0052 Score=53.45 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0059 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0066 Score=52.14 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0049 Score=58.01 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0061 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999975
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0062 Score=51.58 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0095 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0058 Score=57.93 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.-+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0067 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0062 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0069 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0042 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.=.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998874
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.007 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0071 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999999863
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0075 Score=51.96 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.007 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|-.+.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0072 Score=57.93 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0078 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0071 Score=55.58 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=22.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+|.++.+.|++||||||+.+.|...++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987664
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0089 Score=58.16 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 566899999999999999999997663
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0074 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.02 Score=58.48 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=55.3
Q ss_pred cccCCCCCCCChHHHHHHHHHH--HhcC---------------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIAR--ALYQ---------------NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLV 381 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iAR--al~~---------------~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 381 (426)
+........+||||+|-.-+|. |++. .-.+++|||+ +-+|.+..+..++.++++ +--+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4445456789999999543333 2221 1257999999 999999999999999987 555677
Q ss_pred eccChHHHHhcCEEEEEe
Q 014366 382 IAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 382 itH~~~~~~~~D~i~vl~ 399 (426)
+|=. ....++|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 2234789988874
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.013 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999883
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.008 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0084 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0098 Score=51.36 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..+..+.|.||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999988765
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0077 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998743
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0084 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0061 Score=59.91 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCCCCCChHHHHHHHHHHHh---cC--CCCEEEeeccC
Q 014366 323 PRGSSLSGGQRQRLAIARAL---YQ--NSSVLILDEAT 355 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal---~~--~p~illlDEpt 355 (426)
++|.++|+||+||.+++|+| ++ +++++++|||+
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 55678999999999999999 77 89999999997
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0084 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0087 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.=.++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3447999999999999999999863
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0081 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998644
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0086 Score=57.47 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999985
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0082 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.012 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999998853
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0089 Score=52.78 Aligned_cols=21 Identities=52% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0092 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.045 Score=52.34 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCCEEEeeccCCCCC-HHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALD-SRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD-~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
+++++++||.-. +. ......+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999843 44 66667777777766555678888887653
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0073 Score=54.40 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0094 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0084 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999986
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0051 Score=55.31 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=52.61 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=27.6
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 566665554 6789999999999999999888754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.01 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0099 Score=54.00 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=24.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
-+|.++.+.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876643
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=53.99 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+..+.|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0098 Score=55.57 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.024 Score=53.77 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
++.++++||.- .++......+.+.+.+...+..+|++|++..
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 48899999964 4666666777777776545556777887764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0088 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 78999999999999999998743
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0096 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987664
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0094 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.01 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0092 Score=56.24 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.015 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0092 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0054 Score=62.29 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=32.0
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
+++.+ +.+-+|++++|+|++|+|||||++.|.+......|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 44444 5677999999999999999999999987654333333
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999987
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=55.47 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=23.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccE
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 245 (426)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876544443
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=54.57 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|.++++.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987664
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.++++|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999988544
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999985
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.01 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999888653
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.011 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.011 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0083 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=53.63 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=26.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
++|.++.+-|++||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999987765
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
=.++++|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 378999999999999999998643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=56.52 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.07 E-value=0.014 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=55.91 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.012 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999854
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.013 Score=53.30 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|.++.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0097 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0092 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999999874
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.013 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998853
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=51.31 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988875
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=56.24 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999875
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.013 Score=52.64 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.014 Score=53.52 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.+|.++.+.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999843
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=53.87 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|.+++|.|+.||||||+.+.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.018 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998643
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=50.67 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+..+.|.||+|+||||+++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0092 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=56.36 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999997653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.033 Score=60.99 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
..+.|.||+|+|||++++.|.......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478999999999999999999877543
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.=.++++|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999875
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.013 Score=55.25 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.017 Score=52.22 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=55.77 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.13 Score=60.65 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=29.9
Q ss_pred Ccceeee--EEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 203 LVLDQLN--LHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 203 ~~l~~is--l~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
+.|+++. .-+++|+.+.+.||+|||||||...+.
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4677776 569999999999999999999998876
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.72 E-value=0.011 Score=55.25 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++.+++|.|+.||||||+.+.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.22 Score=50.86 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=26.6
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-|+.+.--+++|+.+.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3444433589999999999999999999866653
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.022 Score=51.93 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=21.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll 235 (426)
+++|+.+.|.|++|+|||||+.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997544
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.013 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..++..++.|+||.||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998655
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.072 Score=51.47 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
.+++|+|+||+= .|.......+.+.+++-..+..+|++|++++
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 367999999974 4666666666666654333456777888875
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+|++|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 78999999999999998887643
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.027 Score=49.42 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=25.1
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++..-+. -.|.-+.|.|+||+||||+...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444444 4688999999999999999987753
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.005 Score=57.33 Aligned_cols=30 Identities=43% Similarity=0.649 Sum_probs=23.6
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.+...++| +.|.||+|+||||+++.+++.
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444455 889999999999999999874
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.019 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998765
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.0088 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988853
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=50.94 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999998764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.019 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3789999999999999988874
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.013 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.022 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.022 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999998764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.33 E-value=0.0098 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=4.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988764
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.32 E-value=0.0053 Score=61.95 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=29.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~ 252 (426)
.+++++|++|+||||++..|++.+.....++.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999876544456554444
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.025 Score=54.15 Aligned_cols=26 Identities=35% Similarity=0.714 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999987653
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.024 Score=50.36 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998853
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.24 Score=45.43 Aligned_cols=51 Identities=27% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccC-----------hHHHHhcCEEEEEe
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH-----------LETVMMAKRVFLLD 399 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------~~~~~~~D~i~vl~ 399 (426)
.+.+++++||.--..| ..++.+.+.+ .+..||+..++ .+.+..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 4555555554 47899999999 34567899998874
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.023 Score=50.19 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=33.3
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-----------HHHhcCEEEEEeC
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-----------TVMMAKRVFLLDN 400 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-----------~~~~~D~i~vl~~ 400 (426)
.+++++++||.-- +|++.. +.++.+. .+..|++..++.+ .+..||.|..|+.
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~----~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLF----EVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHH----HHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCCEEEEECccc-CCHHHH----HHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 3678999999854 655433 3333332 3677888777433 4457999988753
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++|+||+|||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988655
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.031 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|.++++=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.032 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.|+||.||||+|..+.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.035 Score=52.60 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
-.++++|.+|+|||||++.|.|-....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEecCCCchHHHHHHHhcCceee
Confidence 478999999999999999999865433
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.032 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999986
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.19 Score=50.50 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+..+++++|++|+||||+..-|+..+.-
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999888866543
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.03 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.034 Score=55.96 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=93.43 E-value=0.027 Score=50.55 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCEEEeeccCC-----CCCHHHHHHHHHHHHHH
Q 014366 335 RLAIARALYQNSSVLILDEATS-----ALDSRSELLVRQAVDRL 373 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts-----~LD~~~~~~i~~~l~~~ 373 (426)
.-.|++.+..+|.....++|+. .+|+...+.+.+.+++.
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVA 209 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhh
Confidence 3467778888888777777665 67777777777666554
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.038 Score=55.05 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|.+++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.024 Score=57.40 Aligned_cols=35 Identities=40% Similarity=0.613 Sum_probs=27.3
Q ss_pred eeEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 208 LNLHIRAGE--TVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 208 isl~i~~Ge--~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+.-.++.|. .+.|.||+|+||||+++.|+......
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 333445555 48999999999999999999887554
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.033 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++..++++|++|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57889999999999999999999863
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.015 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4799999999999999988764
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.062 Score=49.79 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.+.-+.|.||+|+|||++++.+......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 4567899999999999999999987653
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.034 Score=50.25 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++...+.+.||.|+||||+...|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6666689999999999999999998875
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.042 Score=53.67 Aligned_cols=25 Identities=48% Similarity=0.800 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4467899999999999999999876
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.047 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+...+.|.||+|+|||+|.+.++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33568888999999999999999765
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.042 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++...+.|.||+|+||||+++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457899999999999999999875
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.079 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|.+++|||||++.+.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 426 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-87 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-84 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-75 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-75 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-73 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-65 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-45 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-44 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-41 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-40 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-38 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-37 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-36 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-36 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-35 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-33 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-33 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-33 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-30 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-20 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-07 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 4e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-04 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 6e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.001 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.001 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.002 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 265 bits (678), Expect = 1e-87
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 2/234 (0%)
Query: 172 VIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
+ A ++ G + ++SF+Y DN +L +NL I GETVA +G SGGGKSTL
Sbjct: 1 IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
L+ R YD SG IL+D H++++ SLR +GLV QD LFS TV ENI
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG--RPT 118
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
E V A+ ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LIL
Sbjct: 119 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 178
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
DEATSALD SE ++++A+D L T L++AH L T+ A ++ +++NG + E
Sbjct: 179 DEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 232
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 255 bits (654), Expect = 4e-84
Identities = 106/225 (47%), Positives = 145/225 (64%), Gaps = 1/225 (0%)
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+D GD++F N++F Y L +NL I AG+TVAL+G SG GKST+A L+ R YD
Sbjct: 7 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 66
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
G IL+D HD++ L SLR V LVSQ++ LF+ TVA NI Y + E++E
Sbjct: 67 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTEEYSREQIEEA 125
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
AR A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LILDEATSALD+
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
SE ++ A+D L + T LVIAH L T+ A + ++++G + E
Sbjct: 186 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 230
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 233 bits (595), Expect = 2e-75
Identities = 96/219 (43%), Positives = 143/219 (65%), Gaps = 2/219 (0%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + +E+V + A+ A A
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI--SLANPGMSVEKVIYAAKLAGA 118
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 367 RQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
+ + ++ TV++IAH L TV A R+ +++ GK+ E
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 217
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 232 bits (594), Expect = 4e-75
Identities = 94/226 (41%), Positives = 128/226 (56%), Gaps = 4/226 (1%)
Query: 183 HINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
H+ G V+F ++SF Y + LVL L +R GE AL+GP+G GKST+A LL LY P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
G +L+D + L R V V Q+ +F ++ ENI Y L K ME + A
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAY-GLTQKPTMEEITAAA 125
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A F+ LPQGY+T + GS LSGGQRQ +A+ARAL + VLILD+ATSALD+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 362 SELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKLEE 405
S+L V Q + + +VL+I HL V A + L+ G + E
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 228 bits (582), Expect = 2e-73
Identities = 87/214 (40%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ F Y D+ +L ++ + +A GPSGGGKST+ LL R Y P +G I +D
Sbjct: 6 HVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+ NI L++ R +G VSQD + +GT+ EN+ Y L E + A A FV
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTY-GLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
+P NT +G RG +SGGQRQRLAIARA +N +L+LDEAT++LDS SE +V++A+D
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 372 RLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEE 405
L+ T LVIAH L T++ A +++ ++ G++
Sbjct: 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 207 bits (528), Expect = 7e-65
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 21/242 (8%)
Query: 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPS 224
+ KV + +V F ++ VL +NL+I GE +A+ G +
Sbjct: 16 FGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGST 71
Query: 225 GGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284
G GK++L L+L + G I V SQ + GT+ ENI
Sbjct: 72 GSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENII 118
Query: 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344
+ D R + + + + + NT +G G +LSGGQR R+++ARA+Y+
Sbjct: 119 FGV---SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 175
Query: 345 NSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403
++ + +LD LD +E V ++ +L+ + T +++ +E + A ++ +L G
Sbjct: 176 DADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSS 235
Query: 404 EE 405
Sbjct: 236 YF 237
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 154 bits (391), Expect = 3e-45
Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 14/228 (6%)
Query: 188 VKFCNISFKYADNMPL--VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K N++ Y + L +NL+I+ GE V+++GPSG GKST+ ++ L P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 246 ILVDDHDVQNIRLDSLRR----HVGLVSQDITLFSG-TVAENIGY-RDLMTKIDMERVEH 299
+ +D+ ++ D L + +G V Q L T EN+ + M E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R + L + + H + + LSGGQ+QR+AIARAL N +++ D+ T ALD
Sbjct: 122 RKRALECLKMAE-LEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 360 SRSELLVRQAVDRLLGHH--TVLVIAHHLETVMMAKRVFLLDNGKLEE 405
S++ + Q + +L TV+V+ H + +R+ L +G++E
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 152 bits (386), Expect = 2e-44
Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+VK N++ ++ + +++LNL I+ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 6 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTA 301
D D L R++ +V Q ++ TV ENI + + K +RV A
Sbjct: 64 YFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+E + P + LSGGQRQR+A+ARA+ VL++DE S LD++
Sbjct: 122 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 362 SELLVRQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ +R + +L T + + H M M R+ +++ G+L +
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 143 bits (362), Expect = 7e-41
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 24/231 (10%)
Query: 188 VKFCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ + + L+ ++LH+ AG+ +IG SG GKSTL + + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 246 ILVDDHDVQNI---RLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERV 297
+LVD ++ + L RR +G++ Q L S TV N+ + RV
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + P S+LSGGQ+QR+AIARAL N VL+ DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYP-----------SNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 358 LDSRSELLVRQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
LD + + + + + T+L+I H ++ V + V ++ NG+L E
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 143 bits (361), Expect = 2e-40
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 23/230 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ +Y + VL ++L RAG+ +++IG SG GKST + + L P G I+V+
Sbjct: 7 DLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQ 64
Query: 252 DVQNIR-------------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERV 297
++ +R L LR + +V Q L+S TV EN+ + + +
Sbjct: 65 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKH 123
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ R V + + LSGGQ+QR++IARAL VL+ DE TSA
Sbjct: 124 DARERALKYLAKVGIDERAQGKYP----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 358 LDSR-SELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
LD ++R T++V+ H + ++ V L GK+EE
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 136 bits (343), Expect = 3e-38
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 29/224 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+++ L L+ +RAGE + L+GP+G GKSTL + + G I
Sbjct: 8 DVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQ 60
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
++ L H +SQ T F+ V + + D R E A A
Sbjct: 61 PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH----QHDKTRTELLNDVAGA---- 112
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSE 363
+ +G + LSGG+ QR+ +A + Q +L+LDE ++LD +
Sbjct: 113 ----LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 168
Query: 364 LLVRQAVDRLLGHH-TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ + + L +++ +H L + A R +LL GK+
Sbjct: 169 SALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 212
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 134 bits (338), Expect = 2e-37
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ ++ + + + +++L ++ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 4 VRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 248 VDDHDVQNIRLDSLRR----HVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVE 298
+ D V + + +V Q L+ TV +NI + + K+ +RV
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A E + P LSGGQRQR+A+ RA+ + V ++DE S L
Sbjct: 122 EVAELLGLTELLNRKP-----------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 359 DSRSELLVRQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
D++ + +R + +L T + + H M M R+ +++ G L++
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 129 bits (325), Expect = 5e-36
Identities = 41/211 (19%), Positives = 88/211 (41%), Gaps = 20/211 (9%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248
+ ++S Y VL+++ + I G V GP+G GK+TL K + PL G I+
Sbjct: 4 EIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANAD 307
+ + ++ + + ++I + +V + + + + N +
Sbjct: 61 NGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK----------VNKN 105
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
E + L + + LS G +R+ +A L N+ + +LD+ A+D S+ V
Sbjct: 106 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165
Query: 368 QAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398
+++ +L +++I+ E + L
Sbjct: 166 KSILEILKEKGIVIISSR-EELSYCDVNENL 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 130 bits (327), Expect = 6e-36
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 23/226 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ N++ + + +V +NL I GE V +GPSG GKSTL +++ L SG +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
+ + + + R VG+V Q L+ +VAEN+ + ++ +RV A
Sbjct: 59 IGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ P +LSGGQRQR+AI R L SV +LDE S LD+
Sbjct: 117 VLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 363 ELLVRQAVDRLLGH--HTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ +R + RL T++ + H M +A ++ +LD G++ +
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 211
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 128 bits (323), Expect = 2e-35
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 13/217 (5%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ + +L ++ I GE LIGP+G GK+T +++ L P SG + V
Sbjct: 7 DLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ +R+ + + ++ + E + + +E A E
Sbjct: 65 N-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE--EMVERATEIA 121
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
G I R S+ S G ++L IARAL N + ILDE TS LD + VR+ +
Sbjct: 122 -----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 176
Query: 371 DRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ T+LV +H++ V + R+ L+ NG + E
Sbjct: 177 KQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 213
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 128 bits (324), Expect = 3e-35
Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 22/229 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NI + + LD +++ + G+ +IGP+G GKSTL ++ G + ++
Sbjct: 9 NIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 66
Query: 252 DVQN-IRLDSLRRHVGLVSQDITLFSG-TVAENIGY-----------RDLMTKIDMERVE 298
D+ N + + Q TV EN+ K + E
Sbjct: 67 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 126
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+ EF+ + + LSGGQ + + I RAL N ++++DE + +
Sbjct: 127 MVEKAFKILEFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 359 DSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ V L T L+I H L+ V+ ++++ NG++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 123 bits (310), Expect = 1e-33
Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 21/223 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++S K+ + LD L+L + +GE ++GP+G GK+ +L+ + P SG IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTAN 305
+D DV + L + + V Q+ +LF V +N+ + M KI D +RV TAR
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ + P +LSGG++QR+A+ARAL N +L+LDE SALD R++
Sbjct: 117 IEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 366 VRQAVDRLLGHH--TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
R+ + L + TVL I H MA R+ ++ +GKL +
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 123 bits (311), Expect = 1e-33
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 13/218 (5%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ Y + ++L + G+ V LIG +G GK+T + L G I+ +
Sbjct: 11 SLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 252 DVQNIR-LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEF 309
D+ N R + LV + +F TV EN+ K
Sbjct: 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW------- 121
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ +L + G +LSGG++Q LAI RAL +L++DE + L V +
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 370 VDRLLGHH-TVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+ ++ T+L++ + + +A ++L+ G++
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 124 bits (311), Expect = 1e-33
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ N+S + + LD +N++I GE ++GPSG GK+T +++ L P +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 248 VDDHDVQNIRLDSLR---RHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMERVEH 299
DD V + + R +G+V Q L+ T ENI + + +RVE
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A+ + + P LSG Q+QR+A+ARAL ++ S+L+LDE S LD
Sbjct: 124 VAKILDIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 360 SRSELLVRQAVDRLLGH--HTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405
+R R V + T+LV++H + +A RV +L GKL +
Sbjct: 173 ARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 115 bits (290), Expect = 1e-30
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 207 QLNLHIRAG-ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265
+LN+ G + L+GP+G GKS +L+ + P G + ++ D+ L RR +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGI 72
Query: 266 GLVSQDITLFSGTVAEN---IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G V QD LF G R++ RV A + P
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-------- 124
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVL 380
+ LSGG+RQR+A+ARAL +L+LDE SA+D +++ ++ + + + +L
Sbjct: 125 ---ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 381 VIAHHLETVM-MAKRVFLLDNGKLEE 405
+ H L +A V ++ NG++ E
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVE 207
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 86.6 bits (213), Expect = 1e-20
Identities = 21/193 (10%), Positives = 43/193 (22%), Gaps = 31/193 (16%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
+ + G G GK+TL K ++ + ++ + + R + + S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337
+ + A
Sbjct: 63 FFTSKKLVGSY-------------------------------GVNVQYFEELAIPILERA 91
Query: 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL 397
A V+I+DE + + V+ + + K +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRR 151
Query: 398 LDNGKLEELNRST 410
L L EL
Sbjct: 152 LPGAVLIELTPEN 164
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 55.7 bits (132), Expect = 3e-09
Identities = 30/166 (18%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ M S LS+I ++ P +++ I + +R R ISK ++ ++ ++L
Sbjct: 147 LFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHK 206
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALI-PQTVQLIYFGALFILCGGSLLVS 119
V + E+ RF ++++ + +K ++ P + F+L S
Sbjct: 207 EVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSV 266
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165
S ++ +S++ ++ P++ + +F++G A + LF +
Sbjct: 267 MDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 312
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 50.3 bits (118), Expect = 2e-07
Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 40 QSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKK-RKMKALIPQ 98
+ ++A + +L+E + I VK+ E E+ F + + L LK R
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 99 TVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158
+ G + ++ G+ L GS +L +F+ L + P++ + ++ Q +
Sbjct: 251 INTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFAS 310
Query: 159 IERLFDL 165
++R+F L
Sbjct: 311 MDRVFQL 317
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 3e-07
Identities = 22/152 (14%), Positives = 37/152 (24%), Gaps = 5/152 (3%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
V L GP G GK+TL + + + + V +S S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 278 TVAENI----GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333
E R +D+ E A + G + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVL-RNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 334 QRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ R +IL L+
Sbjct: 123 LFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
G V L GPS GKST+ + L L +
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTR 38
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 329 SGGQRQRLAI----ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT-VLVIA 383
SGG++ A+ A YQ S +LDE +ALD + + + R +VI+
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 384 HHLETVMMAKRVF 396
+ +
Sbjct: 394 LKNTMFEKSDALV 406
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 205 LDQLNLHIRAGET-----VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
+D L I A +T + + G S GK+TLA L + + V D
Sbjct: 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.6 bits (86), Expect = 0.001
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250
G + L G G GKST+A+ L L DD
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 39
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 37.4 bits (85), Expect = 0.001
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 215 GETVALIGPSGGGKSTLAKLLLR 237
G T+ L G GK +A+ L
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQV 28
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.8 bits (84), Expect = 0.002
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPL 242
V L GPSG GKSTL K L + + +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSI 27
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.004
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255
G TV L G SG GK+T++ L D D
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 59
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 426 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.8 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.72 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.72 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.68 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.56 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.42 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.24 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.1 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.03 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.6 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.51 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.42 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.42 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.37 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.35 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.3 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.27 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.15 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.14 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.13 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.13 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.1 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.09 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.02 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.01 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.0 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.99 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.98 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.97 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.96 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.95 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.94 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.88 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.86 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.75 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.74 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.72 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.71 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.68 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.67 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.64 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.59 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.55 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.54 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.5 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.48 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.46 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.46 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.45 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.45 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.44 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.43 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.42 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.41 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.4 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.39 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.38 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.36 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.33 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.3 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.28 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.28 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.26 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.24 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.22 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.21 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.21 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.17 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.12 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.1 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.08 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.07 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.06 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.05 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.02 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.02 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.02 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.01 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.0 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.95 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.94 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.93 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.9 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.89 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.88 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.86 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.75 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.74 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.71 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.66 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.64 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.63 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.57 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.54 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.54 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.53 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.51 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.5 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.5 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.41 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.39 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.39 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.38 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.33 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.33 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.31 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.3 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.28 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.27 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.24 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.24 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.23 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.23 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.22 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.22 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.21 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.17 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.16 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.12 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.09 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.09 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.04 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.04 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.0 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.94 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.94 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.93 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.89 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.85 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.83 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.82 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.78 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.77 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.76 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.75 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.74 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.72 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.72 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.71 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.67 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.65 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.64 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.59 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.57 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.44 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.42 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.37 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.37 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.36 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.32 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.27 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.26 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.23 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.15 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.11 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.06 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.0 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.99 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.96 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.92 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.89 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.81 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.62 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.51 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.49 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.35 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.3 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.14 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.11 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.04 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.03 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.0 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.94 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.83 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.7 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.67 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.54 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.5 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.15 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.15 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.11 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.62 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.58 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.39 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.07 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.03 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.85 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.84 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.83 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.25 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 90.17 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.98 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 89.7 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.99 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.93 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.91 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.88 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.82 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.78 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.33 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.04 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.79 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.17 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 86.26 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 86.07 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.99 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.13 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.64 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 84.3 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 84.06 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.99 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 83.94 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 83.7 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.4 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.95 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.85 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 81.74 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.16 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 80.89 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 80.75 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.02 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-71 Score=517.05 Aligned_cols=231 Identities=43% Similarity=0.707 Sum_probs=220.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
+|+|+||||+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++..++|++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 48999999999876677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
||||+|.+|++||+|||.++.+ ..+.++++.+++.+++.+++..+|.|++|.++++|.+|||||||||+|||||+++|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEecccccCCccccccccccCc--cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 9999999999999999999864 45788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcchh
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~~l 419 (426)
+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||||+||++|+|++.|+|+++.++++..
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~ 231 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCH
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCH
Confidence 9999999999999999999999999998889999999999999999999999999999999999887765443
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.3e-70 Score=519.12 Aligned_cols=231 Identities=45% Similarity=0.702 Sum_probs=221.5
Q ss_pred CCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 014366 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
..+.|+++||+|+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 45789999999999877678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+|+||||++.+|++||+|||.++.+ ..++++++++++.+++.+++..+|+|++|.++++|.+||||||||++|||||+
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~--~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred eeeeeeccccCCCCCHHHHHhccCc--CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999865 35688999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++|+|||||||||+||+.+++.|.+.|+++.+++|+|+||||++.++.||||++|++|+|++.|+|++|.++.
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~ 243 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 243 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTT
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999998889999999999999999999999999999999999887764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-69 Score=512.84 Aligned_cols=232 Identities=46% Similarity=0.691 Sum_probs=221.1
Q ss_pred CCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 014366 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
..+.|+++||+|+|+++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence 45689999999999877668999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+++||||++.+|++|+++|+.++.. ...++++++++++.+++.++++.+|+|++|.++++|.+|||||||||+|||||+
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~-~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEEeeccccCCcchhhhhhhcCc-ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999854 345788999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++|+|||||||||+||+.++..|++.|+++.+++|+|+||||++.++.||||+||++|+|++.|+|++|.+++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~ 241 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 241 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999998889999999999999999999999999999999998887653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-68 Score=502.72 Aligned_cols=232 Identities=40% Similarity=0.617 Sum_probs=216.9
Q ss_pred CCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 014366 184 INGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
..+.|+++||+|+|++. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+.+++.+++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 35689999999999864 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++++||||+|++|++||+||+.++... ..+.++...+++.+++.+++..+|+|++|.++++|.+|||||||||+|||||
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQ-KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSS-CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHhhhccccccccCcchhhhhhhhhcc-cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 999999999999999999999998542 3466788888999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+++|+|||||||||+||+.++..+++.|.++.+ ++|+|+||||++.++.||||++|++|+|+++|+|++|.+++
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999988753 68999999999999999999999999999999999887654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.1e-69 Score=507.01 Aligned_cols=227 Identities=39% Similarity=0.653 Sum_probs=215.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||||+|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++|+|
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 7999999999865 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
|||+|.+|++||+||+.++.. ...++++++++++.+++.+++..+|+|++|.++++|.+|||||||||+|||||+++|+
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EccccccCCcchhhheecccc-cccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988753 2456788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||||||||+||+.++..+++.|+++.+++|+|+||||++.+..||||++|++|+|++.|+|++|.+++
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~ 228 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999998899999999999999999999999999999999998887654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-60 Score=444.98 Aligned_cols=226 Identities=29% Similarity=0.466 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. +++||
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEE
Confidence 4999999999975 3699999999999999999999999999999999999999999999999999887754 56899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
||||++.+|+ .||+||+.++....+.+.++.++.. .++++.+ |++...+..+.+||||||||++|||||+.+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhccC
Confidence 9999999996 5999999987665555554433221 1223332 444555566789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcchhhhc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSLVSA 422 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~l~~~ 422 (426)
|++||||||||+||+.++.++++.|+++. + +.|+|+|||+++.+. .||||++|++|+|++.|+++++++++...+.+
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~ 234 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHH
Confidence 99999999999999999999999999984 3 789999999999985 79999999999999999999998887655444
Q ss_pred C
Q 014366 423 G 423 (426)
Q Consensus 423 ~ 423 (426)
.
T Consensus 235 ~ 235 (239)
T d1v43a3 235 T 235 (239)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-61 Score=451.96 Aligned_cols=226 Identities=32% Similarity=0.446 Sum_probs=194.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r~ 263 (426)
.|+++||+++|+++...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48999999999765557999999999999999999999999999999999999999999999999997654 234577
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
+||||||++.+|+. ||+|||.++....+.+.++ +.++++.+++ +......+.+||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-----------~~~~~~~p~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-----------HHVLNHFPRELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-----------GGGTTSCGGGSCHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcCh-----------HhhhhCChhhCCHHHHhHHHH
Confidence 89999999999975 9999999875544455433 4444555444 444455668999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++|||||||++||+.+...+++.|+++. + +.|+|+|||+++.+. .||||++|++|+|++.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999984 3 789999999999885 7999999999999999999999988
Q ss_pred cchhhhcC
Q 014366 416 HDSLVSAG 423 (426)
Q Consensus 416 ~~~l~~~~ 423 (426)
+...+.+.
T Consensus 232 P~~~~~~~ 239 (242)
T d1oxxk2 232 PVSIQVAS 239 (242)
T ss_dssp CSSHHHHH
T ss_pred CCCHHHHh
Confidence 76665543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-61 Score=445.92 Aligned_cols=222 Identities=31% Similarity=0.492 Sum_probs=164.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++|||
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeee
Confidence 689999999975 369999999999999999999999999999999999999999999999999987764 3578999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
|||++.+|+. ||+||+.++......+ .+++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 9999999875433322 345667777777777666654 79999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcchh
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~l 419 (426)
+.+|++|||||||++||+.++..+++.|+++. .+.|+|+|||+++.+. .||||++|++|+|++.|+++++++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCH
Confidence 99999999999999999999999999999873 4789999999999886 69999999999999999999998887665
Q ss_pred hhcCc
Q 014366 420 VSAGL 424 (426)
Q Consensus 420 ~~~~~ 424 (426)
+.+.+
T Consensus 226 ~v~~f 230 (232)
T d2awna2 226 FVAGF 230 (232)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5e-61 Score=444.57 Aligned_cols=219 Identities=32% Similarity=0.495 Sum_probs=191.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|||++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. |++|||
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence 789999999964 389999999999999999999999999999999999999999999999999887754 678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|||++.+|+. ||+||+.++....+ .+.+++.++++..++.++. ...+.+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhH-----------hCChhhCCHHHhcchhhhhhhhcc
Confidence 9999999965 99999987542211 2355666776666555444 445689999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcchhhhc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSLVSA 422 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~l~~~ 422 (426)
|++||||||||+||+.++..+++.|+++. .+.|+|+|||+++.+. .||||++|++|++++.|+|+++++++...+.+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v~ 225 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHH
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHH
Confidence 99999999999999999999999999974 3689999999999886 69999999999999999999998887655443
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-60 Score=441.21 Aligned_cols=221 Identities=32% Similarity=0.452 Sum_probs=191.2
Q ss_pred EEEEeEEEEeCCCCC--CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 014366 188 VKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 262 (426)
|+++||+++|+.+.. .+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999976532 4799999999999999999999999999999999999999999999999999887654 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++||||||++.+|+. ||+||+.++....+.+ .+++.++++.+++.++. ...+.+||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 789999999999965 9999998743222222 34556666666655443 4456799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.++..+++.|+++. + +.|+|+|||+++.+. .||||++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999974 3 789999999999986 799999999999999999999998
Q ss_pred Ccchh
Q 014366 415 NHDSL 419 (426)
Q Consensus 415 ~~~~l 419 (426)
++..-
T Consensus 231 ~P~~~ 235 (240)
T d3dhwc1 231 HPKTP 235 (240)
T ss_dssp SSCCT
T ss_pred CCCCh
Confidence 76543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-60 Score=444.98 Aligned_cols=223 Identities=26% Similarity=0.448 Sum_probs=191.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----Hh
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS----LR 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~----~r 262 (426)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 4899999999975 36999999999999999999999999999999999999999999999999987655433 36
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++||||||++.+|+. ||+||+.++....+.+.+ ++.++++.+++.++ .+..+.+||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~-----------~~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHHHHH
T ss_pred ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHH
Confidence 789999999999975 999999876433333433 34555555555444 34456899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.++..+++.|+++. + +.|+|+|||+++.+. .||||++|++|+|++.|+++++.+
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999874 3 789999999999886 699999999999999999999988
Q ss_pred Ccchhhhc
Q 014366 415 NHDSLVSA 422 (426)
Q Consensus 415 ~~~~l~~~ 422 (426)
++..-+.+
T Consensus 230 ~P~~~~~~ 237 (240)
T d1g2912 230 KPANTFVA 237 (240)
T ss_dssp SCSBHHHH
T ss_pred CCCCHHHH
Confidence 87654443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-59 Score=433.97 Aligned_cols=214 Identities=29% Similarity=0.480 Sum_probs=178.8
Q ss_pred EEEEeEEEEeCCCCC--CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----
Q 014366 188 VKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261 (426)
Q Consensus 188 i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~---- 261 (426)
|+++||+|+|+.+.. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975432 37999999999999999999999999999999999999999999999999999987764
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCC---CCCCCHHHH-HHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDL---MTKIDMERV-EHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~---~~~~~~~~~-~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqkQR 335 (426)
|++||||||++.+|+. ||+||+.++.. ....+.++. .++.+ .++.+ |+.. .....+.+||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHH------HHHhh--chhhhhhcCChhhCCHHHHHH
Confidence 3579999999999865 99999986421 112233222 22222 22221 3322 3445678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
|+|||||+.+|++||||||||+||+.++..+++.|+++. + +.|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999984 3 6899999999998889999999999999999865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-58 Score=443.17 Aligned_cols=209 Identities=28% Similarity=0.432 Sum_probs=188.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+|+|++| .+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 38 ~i~~~~~~~--~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~ 100 (281)
T d1r0wa_ 38 NVSFSHLCL--VG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS 100 (281)
T ss_dssp --CHHHHHH--TT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred cEEEEEcCC--CC--CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEE
Confidence 455555543 32 4699999999999999999999999999999999999999999999988 489
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|+||++++|++||+||+.++.. .+..+.+.+++.+++.+++..+|+++++.+++++.+|||||||||+|||||+++|
T Consensus 101 ~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 101 FCSQFSWIMPGTIKENIIFGVS---YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EECSSCCCCSEEHHHHHTTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEeccccccCceeecccccccc---ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999998753 4567888899999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHH-HHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 347 SVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|||||||||+||+.+++.+++.+ ..+.+++|+|+||||++.++.||||++|++|+|++.|+|++|.+.
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 999999999999999999998764 444567899999999999999999999999999999999888653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.8e-58 Score=433.37 Aligned_cols=219 Identities=32% Similarity=0.451 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---------
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--------- 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--------- 257 (426)
.|+++||+|+|++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECCE--EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 48999999999753 5999999999999999999999999999999999999999999999999986432
Q ss_pred ----HHHHhcceEEEecCCCCCcc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHhchHHHH-HhcCCCcccccCCCCC
Q 014366 258 ----LDSLRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEFV-RTLPQGYNTHIGPRGS 326 (426)
Q Consensus 258 ----~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~----~~~~~~~~~~~~l~~~~-~~lp~g~~t~~~~~g~ 326 (426)
...+|++||||||++.+|+. ||+||+.++. .....+ .+++.++++.+++.+.. ++. +.
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------p~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------PV 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------GG
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccC-----------cc
Confidence 23467889999999999964 9999997642 111222 23456666777775543 333 46
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
+||||||||++|||||+.+|++|||||||+|||+.+..+|++.|+++. ++.|+|+||||++.+. .||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999885 4789999999999986 79999999999999
Q ss_pred EeccccccccCcch
Q 014366 405 ELNRSTLLGSNHDS 418 (426)
Q Consensus 405 e~g~~~~l~~~~~~ 418 (426)
+.|+|++++++++.
T Consensus 229 ~~g~~~ev~~~P~~ 242 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQS 242 (258)
T ss_dssp EEECHHHHHHSCCS
T ss_pred EEcCHHHHHhCCCC
Confidence 99999998877543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-56 Score=420.09 Aligned_cols=219 Identities=23% Similarity=0.341 Sum_probs=185.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-cce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 265 (426)
-|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+....+ ..+
T Consensus 6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 5899999999975 3599999999999999999999999999999999999999999999999999988776654 459
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCH---HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM---ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|+||++.+|+. |++||+.++........ +++.++++.. + +++......+.+||||||||++||||
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~l~~~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---------P-RLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC---------H-HHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---------h-ChHHHHhCchhhCCHHHHHHHHHHHH
Confidence 999999999975 99999977543221111 1122222221 1 23334455678999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|+.+|++|||||||+|||+.++.++++.|++++ +++|||++||+++.+. .||||++|++|++++.|+++++.+++.
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 231 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCHH
T ss_pred HHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCHH
Confidence 999999999999999999999999999999985 5789999999998875 799999999999999999999987753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.4e-56 Score=415.36 Aligned_cols=220 Identities=26% Similarity=0.374 Sum_probs=187.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
|.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+. ...+|+.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEeEEEEECCE--EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhE
Confidence 469999999999764 699999999999999999999999999999999999999999999999998864 56788999
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|+||++.+|+. |++||+.+.......+.+++.+..+. .++.+ |++....++..+||||||||++|||||+.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-----ATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHhc
Confidence 999999999865 99999976432222334443333221 11111 44455556678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++|||||||+|||+.+++.+.+.++++. +++|||++||+++.+. .||||++|++|++++.|+++++..+
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999999875 5789999999999997 7999999999999999999988654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-56 Score=422.16 Aligned_cols=218 Identities=23% Similarity=0.317 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc-ce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~-~i 265 (426)
-|+++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...++.+.++ .|
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred eEEEEEEEEEECCe--EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 48999999999763 5999999999999999999999999999999999999999999999999999998887654 59
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC--------------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK--------------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
+|+||++.+|+. ||+||+.++..... ...+..+++ .+.++.+ |++...+..+.+|||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA------FKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH------HHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHH------HHHHHhc--CcchhccCchhhCCc
Confidence 999999999865 99999987532111 111111111 1222222 455555667789999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++ ++.|||+|||+++.+. .||||++|++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEec
Confidence 99999999999999999999999999999999999999999885 5789999999999885 799999999999999999
Q ss_pred cccccc
Q 014366 409 STLLGS 414 (426)
Q Consensus 409 ~~~l~~ 414 (426)
++++.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHhh
Confidence 987543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-55 Score=408.79 Aligned_cols=212 Identities=27% Similarity=0.440 Sum_probs=178.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+++ ++.++|++- .+ ||||+++ ||+++|+||||||||||+++|+|+++|++|+|.++|+++.++++. |++|||
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCcee
Confidence 566 678899753 23 7999995 689999999999999999999999999999999999999887654 678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|||++.+|+. ||+||+.|+.. ..+..+.++. +.+.++.+ |+....+..+.+|||||||||+|||||+.+|
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~--~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P 145 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLR--NVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCT--TSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred eccchhhcccchhhHhhhhhhc--ccCHHHHHHH-----HHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccC
Confidence 9999999975 99999999753 2333322211 22333333 5555566677899999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++|||||||||||+.++..+++.++++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++.+++
T Consensus 146 ~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence 99999999999999999999999999743 789999999999886 69999999999999999999887654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-51 Score=380.84 Aligned_cols=218 Identities=24% Similarity=0.346 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
-++++||+++| +|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|+++...+..+++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 37899997543 699999999999999999999999999999999976 68999999999999999888888999
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC-
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ- 344 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~- 344 (426)
|++|+... |..++++|+.++... ....+.+.++++..+ ++..++.++.+||||||||++|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~-----------l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHD-KTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSC-TTCHHHHHHHHHHTT-----------CTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eeeccccCCccccHHHHhhhccch-hhHHHHHHHHHHhcC-----------CHhHhCcChhhcCHHHHHHHHHHHHHHhh
Confidence 99998875 567999999876532 223455555555544 4445566778999999999999999997
Q ss_pred ------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 345 ------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 345 ------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+|++|||||||+|||+.++..+.+.++++. ++.|||++||+++.+. .||||++|++|++++.|+++++.+++
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCCh
Confidence 779999999999999999999999999984 5789999999998874 89999999999999999999998877
Q ss_pred chhhhcC
Q 014366 417 DSLVSAG 423 (426)
Q Consensus 417 ~~l~~~~ 423 (426)
.....+|
T Consensus 224 ~l~~~yg 230 (231)
T d1l7vc_ 224 NLAQAYG 230 (231)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 5555555
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-47 Score=350.43 Aligned_cols=191 Identities=20% Similarity=0.334 Sum_probs=155.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+|+|+. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEE
Confidence 4899999999952 5999999999999999999999999999999999999999999999999975 3577899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCC--CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 267 LVSQDITLFSG-TVAENIGYRDL--MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
|+||++.++.. |+.||+.+... ....+.+++.++++..++.+ +.++..+||||||||++|||||+
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc------------cccccCcCCCcHHHHHHHHHHHh
Confidence 99999988754 99999864211 11335566666655544322 12345689999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEeccChHHHHhcCEEEEEeC
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~--~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
.+|+++||||||+|||+.+++++++.|.++.++ .++|.++|++ ..||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence 999999999999999999999999999887543 3444444443 57999998854
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.80 E-value=1.9e-21 Score=171.28 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=104.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~ 296 (426)
+++|+||||||||||++.|+|.++|+.|.+..++.+..............+.++...++..+...+...... ..+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY--GVNVQY 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--EECHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--hcCcch
Confidence 589999999999999999999999999999998876543321111111112222222222222222221110 111110
Q ss_pred HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH-c-
Q 014366 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-L- 374 (426)
Q Consensus 297 ~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~- 374 (426)
..+|+|+++|.++++++.++|+++++|||....+ ....+.+.+.+. .
T Consensus 80 -----------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~ 128 (178)
T d1ye8a1 80 -----------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHD 128 (178)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTC
T ss_pred -----------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhcc
Confidence 2468999999999999999999999999854433 223344444443 2
Q ss_pred CCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 375 GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 375 ~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
.+.|+|+++|+.+....||++..+++|++++.++
T Consensus 129 ~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 129 PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCCEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 2579999999987777899999999999998764
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.72 E-value=9.4e-17 Score=151.63 Aligned_cols=168 Identities=19% Similarity=0.310 Sum_probs=148.5
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|.+++++++++|+..++..+..++..+..++..+..++.++.+.|.++|++++|.++.|+.+.+++++..++..
T Consensus 150 ~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~ 229 (319)
T d3b60a2 150 MMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMR 229 (319)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+............... ....++++++|++++..|.+|+|.++++..+...+..|+..+++.+..++++.++.+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri 309 (319)
T d3b60a2 230 LQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 309 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666555544444333 33456667789999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccc
Q 014366 163 FDLTKFKSK 171 (426)
Q Consensus 163 ~~~l~~~~~ 171 (426)
.+++|.|+|
T Consensus 310 ~elld~~~E 318 (319)
T d3b60a2 310 FAILDSEQE 318 (319)
T ss_dssp HHHHHSCCS
T ss_pred HHHhcCCCC
Confidence 999998765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.72 E-value=9.6e-17 Score=152.05 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=148.1
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+.+++++|.++++.+++.|+..++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|++..++.
T Consensus 154 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~ 233 (323)
T d2hyda2 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233 (323)
T ss_dssp HHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+............... .+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++.++++|
T Consensus 234 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~R 313 (323)
T d2hyda2 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665554444333332 3445667778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccc
Q 014366 162 LFDLTKFKSK 171 (426)
Q Consensus 162 i~~~l~~~~~ 171 (426)
+.+++|.++|
T Consensus 314 i~elLd~e~e 323 (323)
T d2hyda2 314 VFQLIDEDYD 323 (323)
T ss_dssp HHHHHTCCCS
T ss_pred HHHHHCCCCC
Confidence 9999986653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=1.4e-14 Score=143.34 Aligned_cols=73 Identities=25% Similarity=0.303 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHh----cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEEE
Q 014366 326 SSLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal----~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl 398 (426)
..||||||.++++|-.+ ..++|+++||||+++||+.....+.+.|.++.. +.-+|+|||++..+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 56799999998876543 567899999999999999999999999988753 44599999999999999998855
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=4.1e-13 Score=127.49 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHH----hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEE--Ee
Q 014366 326 SSLSGGQRQRLAIARA----LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL--LD 399 (426)
Q Consensus 326 ~~LSgGqkQRl~iARa----l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~v--l~ 399 (426)
..+|+|||+...++.. ...+|+++++|||-++|+|...+++.+.|++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 4689999999877665 34567999999999999999999999999998777789999999999999999966 55
Q ss_pred CC
Q 014366 400 NG 401 (426)
Q Consensus 400 ~G 401 (426)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.10 E-value=1.3e-05 Score=71.83 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=35.5
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHH-Hc-CCceEEEeccChHHHH
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDR-LL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~~~~~~ 390 (426)
+.+..++|+||+..|-|+.....+...+-+ +. .+.+++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 355679999999999999876655555433 32 3568999999987765
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=2e-05 Score=71.04 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=33.9
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHH-HHHHc-C-CceEEEeccChHHH
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQA-VDRLL-G-HHTVLVIAHHLETV 389 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~-~-~~tvi~itH~~~~~ 389 (426)
..+..++|+||+..|-|+.....+... ++.+. + ...++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 345569999999999999877776554 44452 3 45788888886544
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=3.5e-07 Score=78.04 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=29.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~ 251 (426)
..+.|+||+|+|||||++.+++.+....+.+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 358999999999999999999998877666655443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.60 E-value=0.00014 Score=66.25 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=26.7
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
-|+++..=+.+|+++.|.|++|+|||||+.-++
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455544347899999999999999999987665
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=1.7e-05 Score=68.22 Aligned_cols=27 Identities=41% Similarity=0.514 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
|.++.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999876653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=4e-05 Score=68.28 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~ 247 (426)
+|++++++|+||+|||||++.|.+-..-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999987766677775
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=1.9e-05 Score=66.16 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++|+|++|||||||++-|...+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 78999999999999999998765443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=3.9e-06 Score=72.15 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=28.6
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.+++.++++.+| ++.|+|||||||||++.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 457778888777 999999999999999999863
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.35 E-value=5e-05 Score=63.82 Aligned_cols=26 Identities=42% Similarity=0.601 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.|+++.|.||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.30 E-value=5e-05 Score=63.80 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++|-+|.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00042 Score=62.68 Aligned_cols=24 Identities=50% Similarity=0.632 Sum_probs=21.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
.||+++.|.|++|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986554
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.15 E-value=0.00011 Score=61.61 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++|-.++|.||+||||||+.+.|+.-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999987653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=9.1e-05 Score=62.01 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+.++.|.||+||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=4.4e-05 Score=68.25 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~ 247 (426)
+|++++++|+||+|||||++.|.|-..-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999987766677775
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.13 E-value=7e-05 Score=63.01 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.+++|+|++|||||||++-|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999998887766543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.10 E-value=0.0001 Score=62.09 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..++|.||+|||||||++.|+.-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999766
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.09 E-value=0.00012 Score=61.12 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00015 Score=63.61 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.|.++.|+||||||||||.+.|.--+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999887544
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.01 E-value=0.00014 Score=62.06 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986554
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.00 E-value=0.0011 Score=58.50 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+.+.|.||+|||||||+.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999866543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.99 E-value=0.0019 Score=56.63 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=16.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
...++++|||+|+||||.+-=|+..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999876566444
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.99 E-value=0.002 Score=54.42 Aligned_cols=25 Identities=36% Similarity=0.415 Sum_probs=21.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
++-+.+.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999997753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.98 E-value=0.00013 Score=61.63 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccE
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 245 (426)
..+++|.|++||||||+.+.|+..+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999998766544333
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00017 Score=59.20 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|+||+||||||+.+.|+--+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998755
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00011 Score=62.81 Aligned_cols=26 Identities=42% Similarity=0.488 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|-++.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.95 E-value=0.00018 Score=58.96 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~ 249 (426)
+++.|.|++||||||+.+.|..-. .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 478899999999999999775422 2455543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.94 E-value=0.00018 Score=59.80 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=25.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.++.|.||+||||||+.+.|+..++ +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 3789999999999999999998763 3454444
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.00053 Score=61.04 Aligned_cols=42 Identities=14% Similarity=0.370 Sum_probs=32.4
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
+.+++++||+-. |.......+.+.+.+......+|++|++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence 566999999964 788888888888876554556788999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.88 E-value=0.00038 Score=59.12 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.+||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.86 E-value=0.00023 Score=59.24 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|+||+||||||+.+.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999997544
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.75 E-value=0.00029 Score=60.60 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.74 E-value=0.0013 Score=59.80 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++..-+.|.||+|+|||+|++.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455668899999999999999999877
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00036 Score=59.59 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..+.|+||||+|||||++.|...+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999887543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00036 Score=60.89 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.00038 Score=59.70 Aligned_cols=22 Identities=55% Similarity=0.831 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.|+||||||||||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999886544
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.67 E-value=0.00037 Score=59.82 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..++.|+||.||||||+.+.|+--|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.64 E-value=0.00051 Score=58.72 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
|+|-.+.|+||.||||||..+.|+--|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.00053 Score=57.50 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+|+|+|+.|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.55 E-value=0.00052 Score=59.08 Aligned_cols=21 Identities=62% Similarity=0.830 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 014366 218 VALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.|+||||||||||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999988653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.00049 Score=64.56 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=31.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
++.|.-+.|.|+.||||||+++.|++..+|+.=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4556669999999999999999999999887655555
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.50 E-value=0.00054 Score=57.88 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.|+|+|++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.00087 Score=57.27 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+++.|.||+|||||||..-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999876664
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.46 E-value=0.00043 Score=58.81 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 014366 218 VALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~ 238 (426)
|||+|++++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.00071 Score=57.16 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+|+|+|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.45 E-value=0.00075 Score=59.49 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999997643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.45 E-value=0.0007 Score=55.35 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
++.|+|++|||||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.00072 Score=55.24 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++++|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999874
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.43 E-value=0.0007 Score=56.50 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998665
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.00076 Score=56.64 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999973
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.41 E-value=0.00075 Score=55.54 Aligned_cols=40 Identities=10% Similarity=-0.032 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 372 (426)
.+.-+-.+++..+.+.+.-++ |+|+.+...-.++.+.|.+
T Consensus 124 ~~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~ 163 (169)
T d1upta_ 124 SSEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVE 163 (169)
T ss_dssp HHHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHH
Confidence 344444566666666666555 9999999988888777754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.40 E-value=0.00069 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+.|+|++||||||+.+.|+--+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999997544
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.40 E-value=0.00062 Score=58.47 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++++.++.|+||.||||||+.+.|+.-|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999998755
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.39 E-value=0.00056 Score=57.32 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-+++|+|++|||||||++.+.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.00076 Score=57.88 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~ 249 (426)
-.++.|+||.||||||+.+.|+.-| |-++++
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 3479999999999999999999866 445554
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.00078 Score=55.58 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
|=.++++|++|+|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999975
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.00085 Score=57.76 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.30 E-value=0.011 Score=51.24 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
...++.++||+|+||||.+.-|+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34588999999999999887676554
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.28 E-value=0.00063 Score=57.52 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 014366 218 VALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~ 238 (426)
|||+|++|+|||||++.|+|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.001 Score=56.82 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.|+||.||||||..+.|+--|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998644
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.001 Score=55.97 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.24 E-value=0.0008 Score=57.46 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.|.||.||||||+.+.|+--|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.22 E-value=0.001 Score=56.85 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.21 E-value=0.00097 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 677899999999999999997764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.21 E-value=0.0011 Score=55.36 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.|+|++||||||+.+.|+.-+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999998655
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.17 E-value=0.0012 Score=57.52 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|-||+||||||..+.|+--|
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.12 E-value=0.0014 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.10 E-value=0.0014 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++.++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997553
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.00091 Score=58.96 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++.+++|-|+-||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998763
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.07 E-value=0.0011 Score=56.64 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.-+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.00073 Score=56.79 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.|+|+|++++|||||++.|.|-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998854
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.05 E-value=0.0019 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++++|+.|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.001 Score=61.72 Aligned_cols=46 Identities=30% Similarity=0.410 Sum_probs=32.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTV 279 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti 279 (426)
++||.|++||||||+.+.|..++.-..+ ..++..+++|.+..+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchH
Confidence 7899999999999999999877631110 123677777777665433
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0037 Score=51.97 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----CCCCCccE
Q 014366 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSGC 245 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g-----~~~p~~G~ 245 (426)
+++++|.+|+|||||++-+.+ -+.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 589999999999999987664 34566553
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.02 E-value=0.0018 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+||+|+..||||||++.|++..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 9999999999999999999743
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0016 Score=56.34 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=23.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC---CCCccEE
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY---DPLSGCI 246 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~I 246 (426)
+++|.||.||||||+.+.|+--| .-+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 89999999999999999998443 3444544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.00 E-value=0.0016 Score=56.87 Aligned_cols=42 Identities=31% Similarity=0.296 Sum_probs=31.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQ 254 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~ 254 (426)
++|-++-+.|.|||||||+.+.|..-+.. ..-.+.+||.+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 57889999999999999999998743321 1235778886654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.95 E-value=0.0016 Score=58.83 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++|+|||||++.|+|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.94 E-value=0.0015 Score=58.35 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=25.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
..+.+.||+|||||||.+.|++.+.. +-+.++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 35889999999999999999987642 3445544
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0019 Score=56.41 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++|-+++|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.00059 Score=56.29 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.|+|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.91 E-value=0.0018 Score=56.58 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++.+++++||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998766665553
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0018 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998554
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0021 Score=55.77 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.88 E-value=0.0019 Score=56.00 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 014366 217 TVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~ 236 (426)
++||+|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.86 E-value=0.0022 Score=54.14 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|.||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998655
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0046 Score=51.21 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.74 E-value=0.0023 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++++|.+|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0028 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=23.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++|+++-|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987665
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.012 Score=51.94 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
.+++|+||.=. |+......+.+.+++......+|++|++++-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 46999999964 88888888888887655566889999987644
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.64 E-value=0.0028 Score=54.56 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.|+|+|+.|||||||++.+.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0029 Score=55.26 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|.+++|-|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999986664
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.57 E-value=0.0032 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
=.+.|+||.||||||+.+.|+--|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999755
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.0032 Score=52.49 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 488999999999999998775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.0034 Score=52.98 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|+||.||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.53 E-value=0.0033 Score=52.03 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999997764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0077 Score=49.95 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999988774
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0019 Score=60.40 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.-++||+||.|||||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999986554
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.50 E-value=0.0034 Score=52.27 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999997764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0056 Score=50.90 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----CCCCCccEE
Q 014366 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSGCI 246 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g-----~~~p~~G~I 246 (426)
+++++|.+|+|||||++-+.+ -+.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 599999999999999987653 234665543
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0038 Score=55.23 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.+.|.||+|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.39 E-value=0.0038 Score=59.96 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
.+||+|++|+|||||++.|.|...-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 3899999999999999999996543333
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0038 Score=54.13 Aligned_cols=21 Identities=48% Similarity=0.597 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999998864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.38 E-value=0.004 Score=51.79 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=26.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..++|.++++.|+=||||||+.|.++.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 347899999999999999999999886653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0049 Score=51.00 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.33 E-value=0.0035 Score=52.25 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.31 E-value=0.005 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHH
Q 014366 212 IRAGETVALIGPSGGGKSTLAKL 234 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~l 234 (426)
+++|+++.|.|++|+|||||..-
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHH
Confidence 89999999999999999999753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0043 Score=51.91 Aligned_cols=21 Identities=52% Similarity=0.661 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.28 E-value=0.0022 Score=58.75 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999877553
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.0045 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999986653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.011 Score=51.18 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=31.3
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
+.+++|+||+= .|...+...+++.+++-.++..+|++|++++.
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 47899999874 46677777777777765445556888999753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.0028 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
-.+++++||+|+||||.+-=|+..+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999998766665554
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.23 E-value=0.0044 Score=54.28 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=29.2
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
.++.++++||. ..+.......+...+........+|++|++.+.+
T Consensus 108 ~~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 108 ASFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence 36779999996 3444455555666665544455777888887544
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0046 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++|+++.|.||+|||||||...++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999987665
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.22 E-value=0.0039 Score=54.81 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~ 252 (426)
.+.+.||+|+||||++++++.-+....+ .+++.+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~ 70 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPV 70 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTT
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc--cccCcc
Confidence 4789999999999999999987765533 344433
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.22 E-value=0.0041 Score=57.53 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=27.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
|+.-+.++||+|||||+|.|.|+..+. .--+.+++-++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence 334567999999999999999998753 22455554433
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.21 E-value=0.0048 Score=54.69 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.+.++.|.||.|+|||||++-++.-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 5678999999999999999877643
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.17 E-value=0.0051 Score=53.59 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++|+++.|.|++|+||||+..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986665
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.16 E-value=0.0051 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll 235 (426)
+++|+++.|.||+|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999997644
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0054 Score=51.70 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|+.|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 389999999999999988875
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.12 E-value=0.0038 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+..+++++||+|+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999887555543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.09 E-value=0.0055 Score=51.63 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0059 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++++|++|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58899999999999999988754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.04 E-value=0.0075 Score=53.27 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
...+.|.||.|+||||+++.++..++...+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 358999999999999999999988754433
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0058 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999997764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.0052 Score=50.77 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.006 Score=50.46 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.0054 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0082 Score=50.02 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.++|+.|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999988754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.0056 Score=53.82 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+.+.||.|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998653
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0069 Score=54.45 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=23.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++..-+.+.||+|||||++++.|+..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 33445688999999999999999998663
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.93 E-value=0.0065 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998655
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.013 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999996654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.85 E-value=0.013 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0083 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.83 E-value=0.0073 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|+.|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0065 Score=50.00 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998874
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.0075 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|++|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.77 E-value=0.0072 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++||+|...||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.76 E-value=0.011 Score=49.84 Aligned_cols=32 Identities=38% Similarity=0.391 Sum_probs=25.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
.++.-.+.+ .|.-+.|.|+||+||||+.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455555666 78899999999999999986654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0089 Score=49.75 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999976654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.74 E-value=0.0079 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.0077 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 8899999999999999877543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.72 E-value=0.014 Score=48.31 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----CCCCCccE
Q 014366 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSGC 245 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g-----~~~p~~G~ 245 (426)
++.++|..|+|||||++-+.. -|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 689999999999999998653 34455553
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.71 E-value=0.0047 Score=51.89 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0082 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999997753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.67 E-value=0.0068 Score=58.18 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.++-.+.+.||+||||||.+..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3566899999999999999999988654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.65 E-value=0.0067 Score=54.89 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=35.7
Q ss_pred EEEEECCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 217 TVALIGPSGGGKSTLAKLLL---RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
-+||+|+.|+|||||+..|+ |.. ...|++. +|....+..+.+..+++++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCeEE
Confidence 47999999999999999884 433 3456654 56666777777766665543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0076 Score=50.36 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
++.++|++|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999987764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.0087 Score=50.01 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998775
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.57 E-value=0.0087 Score=58.14 Aligned_cols=46 Identities=30% Similarity=0.602 Sum_probs=31.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~ 272 (426)
.=+.++||+|||||-|.+.|++++... -+..|...+++ .|||-.|.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTe---------aGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTE---------VGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeee---------cceeecch
Confidence 357899999999999999999987532 46666544432 66776665
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0092 Score=50.15 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.44 E-value=0.018 Score=48.23 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHh-cC----CCCCccEE
Q 014366 217 TVALIGPSGGGKSTLAKLLL-RL----YDPLSGCI 246 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~-g~----~~p~~G~I 246 (426)
++.++|++|+|||||++-+. |- +.|+-|..
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~ 38 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec
Confidence 57899999999999997554 33 34555543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0093 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987664
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.007 Score=55.25 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=27.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.|-+|++.+|+|++|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999988744
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0093 Score=49.57 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0093 Score=50.71 Aligned_cols=20 Identities=45% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 014366 218 VALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g 237 (426)
++|+|+.|+|||||++-+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.37 E-value=0.01 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-++||.||.|||||||+..|...+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHH
Confidence 479999999999999999887643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.014 Score=48.24 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|+.|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999996653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.32 E-value=0.0096 Score=53.08 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
-+.+.||+|||||++++.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 5789999999999999999864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.27 E-value=0.01 Score=49.79 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=25.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
++.++|..|+|||||++-+..-..|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 589999999999999998876666777743
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.015 Score=48.07 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 014366 217 TVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++++|+.|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999998877
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.23 E-value=0.0074 Score=50.28 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.012 Score=51.25 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
+.+++++||.- .+.......+...+.........++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 46799999976 455666666777776655556778888887543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.0076 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.013 Score=48.40 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999996543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.06 E-value=0.0078 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999887543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.00 E-value=0.012 Score=52.39 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+.||+|||||++++.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.99 E-value=0.025 Score=47.64 Aligned_cols=32 Identities=34% Similarity=0.380 Sum_probs=23.6
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
.++.-.+.+ .|.-+.|.|+||+||||+.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 344444433 57789999999999999886654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.012 Score=53.09 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=31.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEEcCEe
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY-DPLSGCILVDDHD 252 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~I~~~g~~ 252 (426)
=+++|.++-|.||+|||||||.-.++.-. ++..--+++|.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 48899999999999999999986555444 3433446777654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.015 Score=48.00 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 014366 217 TVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++++|.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.92 E-value=0.015 Score=50.60 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHH-hcCCCCCcc
Q 014366 217 TVALIGPSGGGKSTLAKLL-LRLYDPLSG 244 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll-~g~~~p~~G 244 (426)
++.++|++|+|||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999865 355567766
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.89 E-value=0.015 Score=49.12 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHh--cCCCCCcc
Q 014366 217 TVALIGPSGGGKSTLAKLLL--RLYDPLSG 244 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~--g~~~p~~G 244 (426)
++.++|.+|+|||||++-+. --+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68899999999999998873 23468888
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.88 E-value=0.015 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999954
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.015 Score=48.94 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 014366 217 TVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999997765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.014 Score=50.68 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
+.+++++||.- .+.......+.+.|.+..+...++++|++...
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 34699999974 67788888888888776555566677777543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.62 E-value=0.019 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-+.+.||+|||||++++.++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 47899999999999999999864
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.51 E-value=0.045 Score=46.82 Aligned_cols=43 Identities=5% Similarity=0.105 Sum_probs=34.9
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
+.+|+|+||+ -.|...+...+++.|.+-.++...|++|++++.
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhh
Confidence 4689999996 458889999999999876566678889999753
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.49 E-value=0.021 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.018 Score=48.65 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 014366 217 TVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++++|++|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.35 E-value=0.021 Score=51.78 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 217 TVALIGPSGGGKSTLAKLLL---RLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
-+||+|+.|||||||+..|+ |..+ ..|++. +|..+.+..+.+..+.+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcc
Confidence 47999999999999998884 5443 345553 4444455555555555443
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.30 E-value=0.018 Score=52.04 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=36.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccE-EEEcCEeCCCCCHHHHhcceEE
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-ILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~-I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
-++.|.++-+.||+|||||||+-.++.......|. |++|.+. .++++.. +.+|.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHH-HHhCC
Confidence 47899999999999999999976666555444555 5667654 2444433 33443
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.14 E-value=0.034 Score=46.44 Aligned_cols=25 Identities=40% Similarity=0.336 Sum_probs=20.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
.-.|.-+.|.|+||+||||+.-.+.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3468899999999999999885544
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.11 E-value=0.015 Score=51.44 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.+.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.02 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-+|+|+||-++|||||++.|.|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.03 E-value=0.012 Score=54.46 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
|--+.|+||.|+|||||++.+.++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 346899999999999999999999976
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.022 Score=49.80 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.+++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999987653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.94 E-value=0.02 Score=51.68 Aligned_cols=54 Identities=28% Similarity=0.530 Sum_probs=36.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcceEE
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
=++.|.++-|.||+|||||||.-.++....-..| -+++|.+. .++++ +.+.+|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHH-HHHHhCC
Confidence 4789999999999999999999777765543334 45666543 34443 3334444
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.83 E-value=0.019 Score=54.12 Aligned_cols=29 Identities=38% Similarity=0.457 Sum_probs=26.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++++.++.+.||.|+||||+.+.|++++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46778999999999999999999999874
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.70 E-value=0.027 Score=51.29 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|.-.||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999965
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.67 E-value=0.027 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.|||||..-+|||||++.|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999885
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.54 E-value=0.027 Score=50.93 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=30.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEEcC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDD 250 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~-~~p~~G~I~~~g 250 (426)
+.+-+|++.+|.|++|+|||||+.-++.- .+-+.+.+.+-+
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~ 104 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 104 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 67899999999999999999998777643 333444443433
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.50 E-value=0.028 Score=51.28 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC------------CCCccEEEEcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY------------DPLSGCILVDD 250 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~------------~p~~G~I~~~g 250 (426)
=.+||||...||||||++.|++-- +|.-|.+.+.+
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 469999999999999999999752 34567776543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.15 E-value=0.041 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999965
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.15 E-value=0.035 Score=51.12 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.+.++||+|+|||.|.+.|+..+. .--|.+|-
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~ 85 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFDM 85 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEG
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEecc
Confidence 578999999999999999998764 23455554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.11 E-value=0.035 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
-+|++|..++|||||+..|+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.62 E-value=0.043 Score=45.83 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC---CCCCcc
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL---YDPLSG 244 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~---~~p~~G 244 (426)
++.++|..|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5789999999999999887533 345555
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.58 E-value=0.052 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
-+||+|.-.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.39 E-value=0.05 Score=48.97 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=27.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC-----------CCCccEEEEc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY-----------DPLSGCILVD 249 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~-----------~p~~G~I~~~ 249 (426)
=.+||||-.-+|||||++.|++-- +|.-|.|.+.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 378999999999999999999532 3556877654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=0.042 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHH-HhcCCCCCccEEEEc
Q 014366 216 ETVALIGPSGGGKSTLAKL-LLRLYDPLSGCILVD 249 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~l-l~g~~~p~~G~I~~~ 249 (426)
..+.|+|++|||||++++. +........+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4689999999999999864 444444333445554
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.03 E-value=0.055 Score=46.78 Aligned_cols=62 Identities=16% Similarity=0.348 Sum_probs=40.0
Q ss_pred cCCCCEEEeeccCCC-CCHHHHHHHHHHHHHHc-CCceEEEeccCh-HHHH-----hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSA-LDSRSELLVRQAVDRLL-GHHTVLVIAHHL-ETVM-----MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~-LD~~~~~~i~~~l~~~~-~~~tvi~itH~~-~~~~-----~~D~i~vl~~G~i~e~g 407 (426)
+++.+++++|+--.= =+...+..+...+.... .++.+|+++... +.+. ...| +..|-+++..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SR---L~~g~~~~i~ 164 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSR---FEGGILVEIE 164 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHH---HHTSEEEECC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHH---hhCceEEEEC
Confidence 558999999997543 24677888888888765 466777766653 2222 1223 3667766653
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.85 E-value=0.09 Score=48.68 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
+|.|=|+-||||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57889999999999999999887655444433
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.84 E-value=0.06 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
..+++|+|.-|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998764
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.83 E-value=0.043 Score=49.56 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=30.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
+.+-+|++++|+|++|+|||+|+..+..-..-+...+.+
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~ 100 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY 100 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence 678999999999999999999998655544444444444
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.055 Score=47.03 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++.|.|.=|||||||++-++.-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999988874
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=90.17 E-value=0.13 Score=42.23 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=44.3
Q ss_pred CCCEEEeeccCCCCCHH--HHHHHHHHHHHHcCCceEEEeccCh--HHHHhcCEEEEEeC
Q 014366 345 NSSVLILDEATSALDSR--SELLVRQAVDRLLGHHTVLVIAHHL--ETVMMAKRVFLLDN 400 (426)
Q Consensus 345 ~p~illlDEpts~LD~~--~~~~i~~~l~~~~~~~tvi~itH~~--~~~~~~D~i~vl~~ 400 (426)
+.+++||||-..+++.. ++.++.+.|++..++.-+|+.-++. +.+..||.|-.|+.
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 47999999999988765 8899999998755566777777775 34578999988753
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.98 E-value=0.054 Score=49.91 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
...++| .+.++||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 455555 56678999999999999999754
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=89.70 E-value=0.13 Score=45.97 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=38.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT 273 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 273 (426)
++-.++.+.||.++||||++++|..++ +..|.+ ++. -+......+..+--.+.+|+.
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~-~~~f~l~~l~~k~~~~~~e~~ 158 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWT-NENFPFNDCVDKMVIWWEEGK 158 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTT-CSSCTTGGGSSCSEEEECSCC
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--ccc-CCCccccccCCCEEEEEeCCC
Confidence 456689999999999999999999998 555543 221 123444555555445556664
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.99 E-value=0.037 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.1
Q ss_pred EeCCCEEEEECCCCCcHHHHH
Q 014366 212 IRAGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl 232 (426)
+++|+.+.|.+|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999554
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.93 E-value=0.1 Score=44.39 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|++|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999988643
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.11 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-+.||||+|.|||+++.-|+...
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 46899999999999999888644
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.88 E-value=0.09 Score=49.31 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=23.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
+-++||+|+|||-|.|.|+.++. ..-|.+|-
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~ 101 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDA 101 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred eeeeCCCCccHHHHHHHHHhhcc--cceeehhh
Confidence 66789999999999999998763 23455543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.82 E-value=0.099 Score=48.33 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=25.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
.|+|=|+-||||||+++.|...+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 58899999999999999999887654444444
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.78 E-value=0.11 Score=46.60 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.-+.||||+|+|||+++.-++..+
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999998887543
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.33 E-value=0.11 Score=47.72 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-CCCccEEEEcCEe
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY-DPLSGCILVDDHD 252 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~I~~~g~~ 252 (426)
.+.++||+|+|||.+.+.|+..+ .....-+.+|...
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~ 91 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 91 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 57799999999999999999865 3334456665543
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.04 E-value=0.071 Score=48.27 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
-+.+-+|++++|.|++|+|||||+.-+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3688999999999999999999986444
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.79 E-value=0.12 Score=47.67 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.|+|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 488999999999999999987654
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.17 E-value=0.14 Score=44.26 Aligned_cols=38 Identities=11% Similarity=0.303 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCEEE----eeccCCCCCHHHHHHHHHHHHHH
Q 014366 335 RLAIARALYQNSSVLI----LDEATSALDSRSELLVRQAVDRL 373 (426)
Q Consensus 335 Rl~iARal~~~p~ill----lDEpts~LD~~~~~~i~~~l~~~ 373 (426)
.+.+++++ ..+++++ +|.....-|...-+.+.+.+.++
T Consensus 132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~ 173 (224)
T d1jnya3 132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 173 (224)
T ss_dssp HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhH
Confidence 56677766 5566666 79887777776666665555543
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=86.26 E-value=0.2 Score=43.39 Aligned_cols=19 Identities=42% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 014366 218 VALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~ 236 (426)
++++|.-.+|||||+..|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999995
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=86.07 E-value=0.14 Score=40.18 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
+-.+.+-+++|+||.= .+|..+...+...++...
T Consensus 89 ~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~ 122 (136)
T d1a1va1 89 GCSGGAYDIIICDECH-STDATSILGIGTVLDQAE 122 (136)
T ss_dssp GGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTT
T ss_pred chhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHH
Confidence 3445678999999984 478887776766666543
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.99 E-value=0.16 Score=46.15 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=17.8
Q ss_pred eCCCEEEEECCCCCcHHHHH
Q 014366 213 RAGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl 232 (426)
+.|++..+-|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999976
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.13 E-value=0.18 Score=46.03 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=17.2
Q ss_pred CCCEEEEECCCCCcHHHHH
Q 014366 214 AGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl 232 (426)
.|++..+-|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999975
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.64 E-value=0.26 Score=38.35 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=28.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHH-hcCCCCCcc-EEE-EcCEe
Q 014366 213 RAGETVALIGPSGGGKSTLAKLL-LRLYDPLSG-CIL-VDDHD 252 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll-~g~~~p~~G-~I~-~~g~~ 252 (426)
+.|=.+.+.|-+||||||+.+.| ..|.+-..| .|. +||.+
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~n 46 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 46 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCC
Confidence 35667889999999999999888 566554433 344 45543
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=84.30 E-value=0.15 Score=45.52 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.0
Q ss_pred EeCCCEEEEECCCCCcHHH--HHHHHh
Q 014366 212 IRAGETVALIGPSGGGKST--LAKLLL 236 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKST--Ll~ll~ 236 (426)
+.+|+.+.+.+|+|||||+ +..++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 5689999999999999997 334443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=84.06 E-value=0.43 Score=44.31 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCcHHHHHH
Q 014366 214 AGETVALIGPSGGGKSTLAK 233 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ 233 (426)
.+.++.|.||.|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 35699999999999999874
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.99 E-value=0.24 Score=45.24 Aligned_cols=19 Identities=42% Similarity=0.756 Sum_probs=17.6
Q ss_pred CCCEEEEECCCCCcHHHHH
Q 014366 214 AGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl 232 (426)
.|++..+-|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6888999999999999987
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=83.94 E-value=0.18 Score=43.03 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=26.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++-.++.+.||.++|||++...|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 57778999999999999999999999873
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.70 E-value=0.14 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
-.|+-+.+++|+|+|||+..-+..
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 368889999999999998654433
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.40 E-value=0.34 Score=43.01 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
-.++++|..-+|||||++.|.|-...
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~~~ 138 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKNIA 138 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred eEEEEEecCccchhhhhhhhhccceE
Confidence 35999999999999999999996543
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.95 E-value=0.29 Score=42.74 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 014366 217 TVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~ 236 (426)
-++++|..++|||||+.-|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998774
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.85 E-value=0.24 Score=45.80 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 014366 218 VALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~ 236 (426)
+||+|+-|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999885
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=81.74 E-value=0.45 Score=41.61 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.+.-+.|.|+.|+||+++.+.|...-+..
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~ 50 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSDRS 50 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence 34568999999999999999998755443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=81.16 E-value=0.3 Score=43.86 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=13.7
Q ss_pred EEEEECCCCCcHHHHH
Q 014366 217 TVALIGPSGGGKSTLA 232 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl 232 (426)
.+.|.|+.||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4778899999999865
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.89 E-value=0.29 Score=42.90 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 014366 218 VALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~ 236 (426)
++++|..++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7999999999999999883
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=80.75 E-value=0.41 Score=48.46 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..+.+.|.|+||||||+-.|.|+..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999886543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.02 E-value=0.39 Score=42.49 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=13.6
Q ss_pred EEEEECCCCCcHHHHH
Q 014366 217 TVALIGPSGGGKSTLA 232 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl 232 (426)
-+.|+|+-||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4679999999999764
|