Citrus Sinensis ID: 014413

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MSPSLGSPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLSPNASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCRK
ccccccccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccEEEEEcccEEEEEEccccEEEEEEccccc
cccccccccccEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcHHHHcHccccHHHcccccccEEEEHHHHHHHHHccccccccccccccHccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEEcccEEEEcccccEEEEEEcccccc
mspslgspyQWLRELKSEERGLYLIHLLLSCANHvangslenANLALDQIsqlaspdgdTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALstrpegpphlritgihpQKEVLDQMAHRLTEeaekldipfqfNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLlangygysqspdsvsssplspnasakMDSFLNslwglspkVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFdlacfgnvplsycgMLQARRLLQSyncdgyriaednrcvlicwhdrplfsvsawscrk
MSPSLGSPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLSPNASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHdrplfsvsawscrk
MSPSLGSPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYsqspdsvsssplspnasAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCRK
*********QWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLA***GDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALST*******LRITGIHP**EVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYG***********************FLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWS***
************************IHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPG**************EEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNS************************SAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCRK
MSPSLGSPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGY****************SAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCRK
*********QWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAA***********************************ASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCRK
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MSPSLGSPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLSPNASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query425 2.2.26 [Sep-21-2011]
Q9LPR8482 Scarecrow-like protein 3 yes no 0.981 0.865 0.689 1e-177
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.854 0.615 0.350 3e-65
Q9C8Y3511 DELLA protein RGL1 OS=Ara no no 0.856 0.712 0.340 4e-63
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.847 0.628 0.343 5e-60
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.844 0.668 0.330 6e-60
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.847 0.621 0.343 1e-59
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.863 0.670 0.328 1e-59
Q9ST48630 DELLA protein DWARF8 OS=Z N/A no 0.861 0.580 0.316 3e-58
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.849 0.677 0.342 5e-58
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.849 0.614 0.337 1e-57
>sp|Q9LPR8|SCL3_ARATH Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  622 bits (1605), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/448 (68%), Positives = 367/448 (81%), Gaps = 31/448 (6%)

Query: 7   SPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAA 66
           SP+  L++LK EERGLYLIHLLL+CANHVA+GSL+NAN AL+Q+S LASPDGDTMQRIAA
Sbjct: 37  SPFHCLKDLKPEERGLYLIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAA 96

Query: 67  YFTEALAQRILKSWPGLHKALNST--RISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAII 124
           YFTEALA RILKSWPGL+KALN+T  R ++VSEE+ VR+LFF+MFP LKV+++LTN+AI+
Sbjct: 97  YFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAIL 156

Query: 125 EAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184
           EAMEGEK+VHVIDL+A+EPAQW+AL+QA ++RPEGPPHLRITG+H QKEVL+QMAHRL E
Sbjct: 157 EAMEGEKMVHVIDLDASEPAQWLALLQAFNSRPEGPPHLRITGVHHQKEVLEQMAHRLIE 216

Query: 185 EAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADD---------- 234
           EAEKLDIPFQFN VVS+L+ L+ ++LRVKTGEALA+SSVLQLH+ LA+DD          
Sbjct: 217 EAEKLDIPFQFNPVVSRLDCLNVEQLRVKTGEALAVSSVLQLHTFLASDDDLMRKNCALR 276

Query: 235 -----------------YASLIALKNSLLANGYGYSQSPDSVSSSPLSPNASAKMDSFLN 277
                            + S    + + ++N  GYS S DS SS PL   +S + DSFLN
Sbjct: 277 FQNNPSGVDLQRVLMMSHGSAAEARENDMSNNNGYSPSGDSASSLPLP--SSGRTDSFLN 334

Query: 278 SLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKML 337
           ++WGLSPKVMVVTEQDS+HNG TLMERLLE+LY+YAALFDCLE+ V RTS +R+KVEKML
Sbjct: 335 AIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKML 394

Query: 338 FGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGY 397
           FGEEIKNII+CEGFER+ERHEKLEKW QR DLA FGNVPLSY  MLQARRLLQ    DGY
Sbjct: 395 FGEEIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGY 454

Query: 398 RIAEDNRCVLICWHDRPLFSVSAWSCRK 425
           RI E++ C +ICW DRPL+SVSAW CRK
Sbjct: 455 RIKEESGCAVICWQDRPLYSVSAWRCRK 482
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9ST48|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
224106229470 GRAS family transcription factor [Populu 1.0 0.904 0.776 0.0
356538508476 PREDICTED: scarecrow-like protein 3-like 1.0 0.892 0.745 0.0
255551323451 transcription factor, putative [Ricinus 1.0 0.942 0.761 0.0
359479301469 PREDICTED: scarecrow-like protein 3-like 0.997 0.904 0.763 0.0
356543904477 PREDICTED: scarecrow-like protein 3-like 1.0 0.890 0.725 0.0
356543902455 PREDICTED: scarecrow-like protein 3-like 1.0 0.934 0.725 0.0
357481373481 GRAS family transcription factor [Medica 0.990 0.875 0.727 0.0
449442703471 PREDICTED: scarecrow-like protein 3-like 0.992 0.895 0.719 0.0
357474033472 GRAS family transcription factor [Medica 1.0 0.900 0.690 1e-177
225449883478 PREDICTED: scarecrow-like protein 3 [Vit 1.0 0.889 0.696 1e-177
>gi|224106229|ref|XP_002314093.1| GRAS family transcription factor [Populus trichocarpa] gi|222850501|gb|EEE88048.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/448 (77%), Positives = 380/448 (84%), Gaps = 23/448 (5%)

Query: 1   MSPSLGSPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDT 60
           +SPS+GSPY W+RELKSEERGLYLIHLLL+CANHVA+GSLENA +AL QIS LASPDGDT
Sbjct: 23  VSPSMGSPYPWVRELKSEERGLYLIHLLLTCANHVASGSLENAEIALSQISHLASPDGDT 82

Query: 61  MQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTN 120
           MQRIAAYF EALA+RI+K+WPG+ KALN+T+I+ VSE++LVRKLF+DMFPF+KVAFVLTN
Sbjct: 83  MQRIAAYFAEALARRIVKAWPGIDKALNATQITLVSEQILVRKLFYDMFPFMKVAFVLTN 142

Query: 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAH 180
           QAIIEAMEGEK+VHVIDL+AAEPAQWIAL+QA S RPEGPPHLRITGIHPQK VLDQMAH
Sbjct: 143 QAIIEAMEGEKMVHVIDLHAAEPAQWIALLQAFSVRPEGPPHLRITGIHPQKGVLDQMAH 202

Query: 181 RLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADD---YAS 237
           +L EEAEKLDIPFQFN +VSKLENLD + LRVKTGEALAISS+LQLHS LA+DD     S
Sbjct: 203 KLIEEAEKLDIPFQFNPIVSKLENLDIEILRVKTGEALAISSILQLHSFLASDDELRKKS 262

Query: 238 LIALKNSLLAN--------------------GYGYSQSPDSVSSSPLSPNASAKMDSFLN 277
              LKNS   N                      GYS SPDS SSSPLS  AS KMD FLN
Sbjct: 263 PSTLKNSNGINMQRVLQMNQNTLGELLEKDTANGYSPSPDSASSSPLSSTASVKMDCFLN 322

Query: 278 SLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKML 337
           SLWGLSPK+MVVTEQDSNHNG TLMERLLEALY+YAALFDCLES+VSRTSMERLKVEKML
Sbjct: 323 SLWGLSPKLMVVTEQDSNHNGSTLMERLLEALYTYAALFDCLESTVSRTSMERLKVEKML 382

Query: 338 FGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGY 397
           FG+EIKNIIACEG  RKERHEKLEKWIQR DLA FGNV LSY GMLQARRLLQ Y CDGY
Sbjct: 383 FGDEIKNIIACEGAARKERHEKLEKWIQRLDLAGFGNVSLSYYGMLQARRLLQGYGCDGY 442

Query: 398 RIAEDNRCVLICWHDRPLFSVSAWSCRK 425
           R+ E+N  V+ICW DRPLFSVSAW CRK
Sbjct: 443 RMKEENGSVVICWQDRPLFSVSAWRCRK 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356538508|ref|XP_003537745.1| PREDICTED: scarecrow-like protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|255551323|ref|XP_002516708.1| transcription factor, putative [Ricinus communis] gi|223544203|gb|EEF45727.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359479301|ref|XP_002266911.2| PREDICTED: scarecrow-like protein 3-like [Vitis vinifera] gi|147775853|emb|CAN60488.1| hypothetical protein VITISV_027673 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543904|ref|XP_003540398.1| PREDICTED: scarecrow-like protein 3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356543902|ref|XP_003540397.1| PREDICTED: scarecrow-like protein 3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|357481373|ref|XP_003610972.1| GRAS family transcription factor [Medicago truncatula] gi|355512307|gb|AES93930.1| GRAS family transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|449442703|ref|XP_004139120.1| PREDICTED: scarecrow-like protein 3-like [Cucumis sativus] gi|449476121|ref|XP_004154646.1| PREDICTED: scarecrow-like protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357474033|ref|XP_003607301.1| GRAS family transcription factor [Medicago truncatula] gi|355508356|gb|AES89498.1| GRAS family transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|225449883|ref|XP_002267910.1| PREDICTED: scarecrow-like protein 3 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.536 0.473 0.760 6e-159
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.494 0.410 0.365 2.5e-62
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.508 0.330 0.413 4.9e-60
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.531 0.413 0.337 1.6e-58
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.487 0.388 0.375 3e-57
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.487 0.352 0.366 1.6e-56
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.487 0.395 0.362 1.9e-56
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.508 0.523 0.336 9.9e-56
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.475 0.412 0.331 3.7e-55
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.503 0.358 0.339 1.5e-53
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 915 (327.2 bits), Expect = 6.0e-159, Sum P(2) = 6.0e-159
 Identities = 175/230 (76%), Positives = 212/230 (92%)

Query:     7 SPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAA 66
             SP+  L++LK EERGLYLIHLLL+CANHVA+GSL+NAN AL+Q+S LASPDGDTMQRIAA
Sbjct:    37 SPFHCLKDLKPEERGLYLIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAA 96

Query:    67 YFTEALAQRILKSWPGLHKALNST--RISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAII 124
             YFTEALA RILKSWPGL+KALN+T  R ++VSEE+ VR+LFF+MFP LKV+++LTN+AI+
Sbjct:    97 YFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAIL 156

Query:   125 EAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184
             EAMEGEK+VHVIDL+A+EPAQW+AL+QA ++RPEGPPHLRITG+H QKEVL+QMAHRL E
Sbjct:   157 EAMEGEKMVHVIDLDASEPAQWLALLQAFNSRPEGPPHLRITGVHHQKEVLEQMAHRLIE 216

Query:   185 EAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADD 234
             EAEKLDIPFQFN VVS+L+ L+ ++LRVKTGEALA+SSVLQLH+ LA+DD
Sbjct:   217 EAEKLDIPFQFNPVVSRLDCLNVEQLRVKTGEALAVSSVLQLHTFLASDD 266
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009739 "response to gibberellin stimulus" evidence=IEP
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LPR8SCL3_ARATHNo assigned EC number0.68970.98110.8651yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-147
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  423 bits (1089), Expect = e-147
 Identities = 177/405 (43%), Positives = 243/405 (60%), Gaps = 41/405 (10%)

Query: 24  LIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGL 83
           L+HLLL+CA  V++G L  A   L +++QLASP GD MQR+AAYFTEALA R+ +S   +
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 84  HKALNS--TRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAA 141
           + AL    +  S   E +   KLF+++ P+LK      NQAI+EA EGE+ VH+ID +  
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 142 EPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS 197
           +  QW +LIQAL++RP GPPHLRITGI        E L++   RL + A+ L +PF+FN 
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 198 VVSK-LENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSP 256
           +V+K LE+LD + L V+ GEALA++ V  LH LL                       +S 
Sbjct: 181 LVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLD----------------------ESV 218

Query: 257 DSVSSSPLSPNASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALF 316
              S             +FL  +  L+PKV+ + EQ++NHN    + R +EAL+ Y+ALF
Sbjct: 219 SLESP------------TFLRLVKSLNPKVVTLVEQEANHNSAPFLARFVEALHYYSALF 266

Query: 317 DCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVP 376
           D LE+++ R S ER KVE+ L G EI N++ACEG ER ERHE   KW +R   A F  VP
Sbjct: 267 DSLEATLPRDSEERRKVERELLGREIVNVVACEGAERVERHETFGKWRERMRRAGFRPVP 326

Query: 377 LSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 421
           LS   + QA+ LL+ Y  DGYR+ EDN  +++ W  RPL + SAW
Sbjct: 327 LSEFAVKQAKLLLRLYYVDGYRVEEDNGSLVLGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 425
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.71
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.7
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.68
PLN02233261 ubiquinone biosynthesis methyltransferase 96.11
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.06
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 94.8
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 94.66
PRK06202232 hypothetical protein; Provisional 94.42
PLN02336475 phosphoethanolamine N-methyltransferase 93.56
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 93.43
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 93.26
TIGR03438301 probable methyltransferase. This model represents 92.86
PRK08317241 hypothetical protein; Provisional 92.83
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 92.67
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 92.65
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 92.6
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 92.58
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 92.56
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 92.53
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 92.29
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 91.41
PRK05785226 hypothetical protein; Provisional 91.29
PRK11207197 tellurite resistance protein TehB; Provisional 90.48
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 90.21
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 88.89
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 88.53
PLN02336 475 phosphoethanolamine N-methyltransferase 88.53
PRK12335287 tellurite resistance protein TehB; Provisional 88.44
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 88.05
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 86.97
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 86.87
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 86.71
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 86.6
TIGR02081194 metW methionine biosynthesis protein MetW. This pr 85.98
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 85.36
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 83.46
PLN02585315 magnesium protoporphyrin IX methyltransferase 83.37
PF02353273 CMAS: Mycolic acid cyclopropane synthetase; InterP 81.9
PLN02244340 tocopherol O-methyltransferase 81.02
PF03848192 TehB: Tellurite resistance protein TehB; InterPro: 80.88
PF0824299 Methyltransf_12: Methyltransferase domain; InterPr 80.72
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-113  Score=875.39  Aligned_cols=367  Identities=49%  Similarity=0.806  Sum_probs=346.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHHHHhhhccccchhcccccCCCC--CchHHHHH
Q 014413           24 LIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRIS--SVSEEMLV  101 (425)
Q Consensus        24 l~~lL~~cA~av~~~~~~~A~~lL~~l~~~as~~Gd~~qRla~yF~~AL~~Rl~~~~~~~~~~l~~~~~~--~~~~~~~a  101 (425)
                      |++||++||+||+.||.+.|+.+|++|++++||+|||+||+|+||++||.+|+.+.+++.|.++.....+  ...+.+.+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999888888776443322  13567789


Q ss_pred             HHHHHhhccchhhhHHHhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecC----ChHHHHH
Q 014413          102 RKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQ  177 (425)
Q Consensus       102 ~~~f~~~~P~~~fa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~----~~~~l~~  177 (425)
                      |+.||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||+|++|||+||||||++    +.+.+++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998    7889999


Q ss_pred             HHHHHHHHHHhcCCceEEeee-cccccccCccccccCCCceEEEEeccccchhccCCchHHHHHHhhhhhccCCCCCCCC
Q 014413          178 MAHRLTEEAEKLDIPFQFNSV-VSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSP  256 (425)
Q Consensus       178 tg~rL~~~A~~l~v~FeF~~v-~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~Ll~~~de~~~~a~~~~~~~~~~~~~~sp  256 (425)
                      ||++|.+||+++||||||++| ..++|++++++|++++||+|||||+|+||||+..++.                     
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~---------------------  219 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGA---------------------  219 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhcccccc---------------------
Confidence            999999999999999999996 5689999999999999999999999999999732210                     


Q ss_pred             CCCCCCCCCCCcchhHHHHHHHhHcCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHH
Q 014413          257 DSVSSSPLSPNASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKM  336 (425)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~L~~ir~L~P~vvvl~E~e~~hn~~~F~~RF~eal~~YsalFdsLda~~~~~~~eR~~iE~~  336 (425)
                                 ..++++.||+.||+|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.
T Consensus       220 -----------~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~  288 (374)
T PF03514_consen  220 -----------LENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERL  288 (374)
T ss_pred             -----------ccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence                       123689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCcccccccchhhHHHHHhhCCCccccCChhHHHHHHHHhhhcCCCCcEEEecCCEEEEEECCceeE
Q 014413          337 LFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLF  416 (425)
Q Consensus       337 ~~g~eI~niVA~eG~~R~eRhE~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~g~l~L~Wk~~pL~  416 (425)
                      +||+||+|||||||.+|+||||++++|++||.+|||+++|+|++++.|||.|++.|+++||+|.+++|||+||||++||+
T Consensus       289 ~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~  368 (374)
T PF03514_consen  289 FFGREIMNIVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLV  368 (374)
T ss_pred             HhhhHHHHhhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             EEeeee
Q 014413          417 SVSAWS  422 (425)
Q Consensus       417 ~~SaW~  422 (425)
                      ++||||
T Consensus       369 ~~SaWr  374 (374)
T PF03514_consen  369 AASAWR  374 (374)
T ss_pred             EEeCcC
Confidence            999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>TIGR02081 metW methionine biosynthesis protein MetW Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB Back     alignment and domain information
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 67/468 (14%), Positives = 131/468 (27%), Gaps = 114/468 (24%)

Query: 12  LRELKSEERGLYLIHLLLSCANHVA----NGSLE-NANLALDQIS-QLASPDGDT----- 60
           +    +    L L   LLS    +        L  N    +  I  +   P   T     
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 61  ----MQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLK--- 113
               +      F +    R+      L +AL   R      + ++      +    K   
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLK-LRQALLELR----PAKNVL---IDGVLGSGKTWV 166

Query: 114 VAFVLTNQAIIEAMEGEKVVHVIDL-NAAEPAQWIALIQALSTRPEGPPHLRITGIHPQK 172
              V  +  +   M+ +  +  ++L N   P   + ++Q L  + +     R       K
Sbjct: 167 ALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 173 EVLDQMAHRLTEEAEKLDIPFQFNSV-----VSKLENLD-FDKLRVKT-------GEALA 219
             +  +   L    +        N +     V   +  + F+ L  K             
Sbjct: 225 LRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDF 280

Query: 220 ISSVLQLHSLLAADDYASLIALKNS--LLAN--GYGYSQSPDSVSS-SPLSPNASAKMDS 274
           +S+    H  L  D ++  +       LL           P  V + +P           
Sbjct: 281 LSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---------- 328

Query: 275 FLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERL--- 331
              S+   S +  + T  +  H     +  ++E+  S     + LE +  R   +RL   
Sbjct: 329 -RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SL----NVLEPAEYRKMFDRLSVF 381

Query: 332 --------KVEKMLFGEEIKN---IIACEGFERK---ERHEKLEKWIQRFDLACFGNVPL 377
                    +  +++ + IK+   ++  +   +    E+  K E  I    +     V L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPK-ESTISIPSIYLELKVKL 439

Query: 378 SYCGMLQARRLLQSYNC--------------DGYRIAEDNRCVLICWH 411
                L  R ++  YN               D Y             H
Sbjct: 440 ENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQY----------FYSH 476
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.78
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.8
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.43
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 96.39
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.28
1vl5_A260 Unknown conserved protein BH2331; putative methylt 96.14
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.93
2r3s_A335 Uncharacterized protein; methyltransferase domain, 95.81
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 95.76
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 95.6
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 95.53
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.5
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 95.48
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.11
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 95.08
1xxl_A239 YCGJ protein; structural genomics, protein structu 95.02
3f4k_A257 Putative methyltransferase; structural genomics, P 95.01
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 94.92
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 94.82
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 94.39
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 94.05
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 94.0
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 94.0
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.9
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 93.23
3m70_A286 Tellurite resistance protein TEHB homolog; structu 93.07
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.05
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.71
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 92.67
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 92.54
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 92.52
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 92.2
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 92.06
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 91.97
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 91.96
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 91.8
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 91.57
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 91.38
3gu3_A284 Methyltransferase; alpha-beta protein, structural 91.28
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 90.98
3hnr_A220 Probable methyltransferase BT9727_4108; structural 90.96
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 90.59
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 90.53
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 90.49
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 90.18
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 90.18
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 89.85
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 89.46
3lcc_A235 Putative methyl chloride transferase; halide methy 89.45
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 89.44
3ocj_A305 Putative exported protein; structural genomics, PS 89.42
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 89.12
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 88.65
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 88.51
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 88.36
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 87.95
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 87.91
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 87.46
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 87.25
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 87.21
1wzn_A252 SAM-dependent methyltransferase; structural genomi 86.69
2p7i_A250 Hypothetical protein; putative methyltransferase, 86.58
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 86.35
3i9f_A170 Putative type 11 methyltransferase; structural gen 86.02
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 85.81
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 85.59
1vlm_A219 SAM-dependent methyltransferase; possible histamin 85.26
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 85.22
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 84.88
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 84.73
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 84.69
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 84.64
3giw_A277 Protein of unknown function DUF574; rossmann-fold 84.04
3iv6_A261 Putative Zn-dependent alcohol dehydrogenase; alpha 83.95
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 83.85
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 83.81
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 83.73
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 83.57
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 83.5
4hg2_A257 Methyltransferase type 11; structural genomics, PS 83.37
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 82.95
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 82.67
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 81.88
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 81.67
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 81.18
3ege_A261 Putative methyltransferase from antibiotic biosyn 80.95
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 80.75
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 80.22
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 80.1
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.78  E-value=0.00085  Score=64.13  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=51.5

Q ss_pred             EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCcccccc
Q 014413          133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRV  212 (425)
Q Consensus       133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L~~  212 (425)
                      -+|+|+|-|.|.    +...|+++- ++|..+||||+.+.+.++.+.+++.++-  ...+++|.  ...++++...    
T Consensus        72 ~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~--~~D~~~~~~~----  138 (261)
T 4gek_A           72 TQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI--EGDIRDIAIE----  138 (261)
T ss_dssp             CEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEE--ESCTTTCCCC----
T ss_pred             CEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEe--eccccccccc----
Confidence            479999999994    445566543 3456899999999999998888775432  22344443  2334443322    


Q ss_pred             CCCceEEEEeccccchh
Q 014413          213 KTGEALAISSVLQLHSL  229 (425)
Q Consensus       213 ~~gEalaVn~~~~Lh~L  229 (425)
                       +  +=+|-|.+.|||+
T Consensus       139 -~--~d~v~~~~~l~~~  152 (261)
T 4gek_A          139 -N--ASMVVLNFTLQFL  152 (261)
T ss_dssp             -S--EEEEEEESCGGGS
T ss_pred             -c--cccceeeeeeeec
Confidence             2  2234456679988
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.81
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.81
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.62
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 96.38
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.14
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.92
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 95.34
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.28
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.24
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 95.09
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 94.88
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 94.69
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 93.28
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 93.05
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 92.78
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 91.72
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 91.55
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 90.58
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 89.91
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 87.38
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 87.15
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 84.63
d2p7ia1225 Hypothetical protein ECA1738 {Erwinia carotovora [ 82.83
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 81.5
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=0.00098  Score=59.24  Aligned_cols=83  Identities=14%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCcccc
Q 014413          131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKL  210 (425)
Q Consensus       131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L  210 (425)
                      +.-||+|+|-|.|.    +...|+... ..|..++|||+.+.+.++.+.+++.+.    +....++.+.....+      
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~S~~ml~~A~~~~~~~----~~~~~~~~~~~d~~~------  103 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNSQPMVERCRQHIAAY----HSEIPVEILCNDIRH------  103 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECSCHHHHHHHHHHHHTS----CCSSCEEEECSCTTT------
T ss_pred             CCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCCCHHHHHHHHHHhHhh----cccchhhhccchhhc------
Confidence            34589999999993    334455432 235689999999999999888877533    444444333222222      


Q ss_pred             ccCCCceEEEEeccccchh
Q 014413          211 RVKTGEALAISSVLQLHSL  229 (425)
Q Consensus       211 ~~~~gEalaVn~~~~Lh~L  229 (425)
                       ...++.-+|.|.+.+|++
T Consensus       104 -~~~~~~d~i~~~~~l~~~  121 (225)
T d1im8a_         104 -VEIKNASMVILNFTLQFL  121 (225)
T ss_dssp             -CCCCSEEEEEEESCGGGS
T ss_pred             -cccccceeeEEeeecccc
Confidence             223344567788889987
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure