Citrus Sinensis ID: 014418

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
Protein Sequence
MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEHEHccccHHcccccHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mqqfskgdsvnlsaihpmrmheddnldydsnassssfefhkgersmqnhmarsfsrpmpskwndAEKWIMNRQIIQANYAKKNALhnqanrlpatnmvrvvpeygtydhkpstvraadtkrvdfcqtashtlekfsfvpsgthqahggnamidsctqskdleeviqtdvpctksssenesvvPAIRSVCMrdmgtemtpvasqepsrtatpvgattplrsptssipstprgrapastpmeqtgidesqhpvenskrdlSEQEIKEKTRREIVALGVQLGKMNIAawaskdeqgkntssaeknsdmEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGeyirqtgqipsshftccgwf
Flexible Loop (DISEMBL)
mqqfskgdsvnlsaihPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHnqanrlpatnMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTdvpctksssenesvvpAIRSVCMRDMGTEmtpvasqepsrtatpvgattplrsptssipstprgraPASTPmeqtgidesqhpvenskrdlseqeikekTRREIVALGVQLGKMNIaawaskdeqgkntssaeknsdmeelERIEYEKRASAWAeaekskhiarfkreeikiqaWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMvkkismsrqrseeKRAAAearksrdaertaaqgeyirqtgqipsshFTCCGWF
Low Complexity Region (SEG)
MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGAttplrsptssipstpRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQrseekraaaearksrdaerTAAQGEYIRQTGQIPSSHFTCCGWF
Disordered region (IsUnstruct)
***************************************************************DAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVP**********************************************************************************************************************************EIVALGVQLGKMNIAAW**********************************************************************************************************************************SHFTCCGW*
Disordered Region (DISOPRED)
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QIPSSHFTCCGWF
Disordered Region (DISEMBL)
********SVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDV***********VVPAIRSVCMRDMGTE******************************************************************IKEKTRREIVALGVQLGKMNIAAWASK*****************ELERIEYEK***********KHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI***************************************QGEYIRQTGQIPSSHFTCCGWF
Disordered Region (DISPRO)
***********************************************************SKWNDAEKWIMN**************************************************************************************************************VPAIRSVCMRDMGTEMTPV*********************************************************LSEQEIKEKTRREIVALGVQLGKMNIAAWASK****************EELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAE*******ERTA***EYI**T*QIPSSHFTCCGWF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	425	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.270	0.580	0.363	2e-09
Q9M2D8	212	Uncharacterized protein A	no	no	0.263	0.528	0.354	1e-08
O80837	190	Remorin OS=Arabidopsis th	no	no	0.301	0.673	0.335	1e-08

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 308 LERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI 364
           L R+  EKR S   AW E+EKSK   + +++   I AWE+ +KA LEAE++++E ++E+ 
Sbjct: 81  LARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKK 140

Query: 365 RAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGW 424
           +A+   KM  KI++  + +EEKRA  EA++  D  +        R TG  P       G 
Sbjct: 141 KAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKK---ILGI 197

Query: 425 F 425
           F
Sbjct: 198 F 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 12/124 (9%)

Query: 308 LERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI 364
           L  +  EKR S   AW E+EKSK   + +++   + AWE+ +KA +EA++++IE ++E+ 
Sbjct: 95  LADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKK 154

Query: 365 RAQAQAKMVKKISMSRQRSEEKRAAAEARKSRD---AERTAAQGEYIRQTGQIPSSHFTC 421
           +A+   +M  K++   + +EE+RA  EA++  D   AE TAA+    R TG +P +    
Sbjct: 155 KAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAK---YRATGIVPKA---T 208

Query: 422 CGWF 425
           CG F
Sbjct: 209 CGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 295 NTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEM 354
           ++ SA+++  + +LE+ +      AW E+EKSK   R +++   + AWE+ +KA +EA++
Sbjct: 63  SSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQL 122

Query: 355 RRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQI 414
           R+IE ++E+ +AQ   KM  K++   + +EEKRA  EA+K  +  +    G   R TG +
Sbjct: 123 RKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVV 182

Query: 415 PSSHFTCCGWF 425
           P +    CG F
Sbjct: 183 PKA---TCGCF 190

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
441481999	541	remorin-3 protein [Dimocarpus longan]	0.995	0.781	0.785	0.0
255584507	535	DNA binding protein, putative [Ricinus c	0.988	0.785	0.726	1e-179
356525106	540	PREDICTED: uncharacterized protein LOC10	0.992	0.781	0.693	1e-166
356512331	540	PREDICTED: uncharacterized protein LOC10	0.985	0.775	0.695	1e-165
356526393	540	PREDICTED: uncharacterized protein LOC10	0.992	0.781	0.693	1e-164
225443950	526	PREDICTED: uncharacterized protein LOC10	0.969	0.783	0.683	1e-160
147838010	585	hypothetical protein VITISV_036630 [Viti	0.969	0.704	0.681	1e-159
224061059	528	predicted protein [Populus trichocarpa]	0.969	0.780	0.645	1e-150
449433601	537	PREDICTED: uncharacterized protein LOC10	0.985	0.780	0.644	1e-142
15220725	509	Remorin family protein [Arabidopsis thal	0.896	0.748	0.579	1e-127

>gi|441481999|gb|AGC39094.1| remorin-3 protein [Dimocarpus longan]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/425 (78%), Positives = 373/425 (87%), Gaps = 2/425 (0%)

Query: 3   QFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKW 62
           QF K DS N +AIHPMR+ ED+NLDYDSNASSSSFEFHKGERS+ N +ARSFSRPMPSKW
Sbjct: 116 QFLKVDSGNSNAIHPMRVFEDENLDYDSNASSSSFEFHKGERSVHNSIARSFSRPMPSKW 175

Query: 63  NDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRV 122
           NDAEKWIMN+Q  QAN+ KK AL+NQ NRLP TNMVRVVPE+ TYDHKPS  RAADTKRV
Sbjct: 176 NDAEKWIMNKQNAQANHPKKIALYNQTNRLPQTNMVRVVPEHVTYDHKPSMARAADTKRV 235

Query: 123 DFCQTASH-TLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESV 181
           DFCQ  S    EKFSF+P GTHQA+GGNA++D+ TQSKD ++V Q D+ CTK S+E+ SV
Sbjct: 236 DFCQPVSQGAFEKFSFIPPGTHQAYGGNALVDTYTQSKDTKDVGQQDLSCTKISTEDTSV 295

Query: 182 VPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQ 241
           VPAIRSV MRDMGTEMTPVASQEPSRTATPVGATTPLRSP SSIPSTPR  APASTP++ 
Sbjct: 296 VPAIRSVSMRDMGTEMTPVASQEPSRTATPVGATTPLRSPASSIPSTPRRGAPASTPVDN 355

Query: 242 TGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQ-GKNTSSAE 300
           T  DESQ PVEN +R L++QE+KEKTRREIVALGVQLGKMNIAAWASK+EQ  KN + + 
Sbjct: 356 TTDDESQCPVENIRRVLTDQEMKEKTRREIVALGVQLGKMNIAAWASKEEQENKNDNPSA 415

Query: 301 KNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAE 360
           +  DMEELERIEYE RA+AW EAEKSKH ARFKREEIKIQAWESRQKAKLEAEM+RIEAE
Sbjct: 416 ETVDMEELERIEYENRAAAWEEAEKSKHTARFKREEIKIQAWESRQKAKLEAEMQRIEAE 475

Query: 361 VEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFT 420
           VEQ+RAQAQAKMVKKI+M+RQ+SEEKRAAA+ARK+RDAERTAAQ EYIRQTG++PSSHFT
Sbjct: 476 VEQMRAQAQAKMVKKIAMARQKSEEKRAAADARKNRDAERTAAQAEYIRQTGRMPSSHFT 535

Query: 421 CCGWF 425
           CCGW 
Sbjct: 536 CCGWL 540

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584507|ref|XP_002532982.1| DNA binding protein, putative [Ricinus communis] gi|223527246|gb|EEF29406.1| DNA binding protein, putative [Ricinus communis]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 314/432 (72%), Positives = 359/432 (83%), Gaps = 12/432 (2%)

Query: 1   MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPS 60
           MQQF+KG+S N SA+HPMR  EDDNLDYDSNASSSSFEFHK ER+  N   RSFSRPMPS
Sbjct: 108 MQQFTKGESANSSAVHPMRSLEDDNLDYDSNASSSSFEFHK-ERAAHNQFTRSFSRPMPS 166

Query: 61  KWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTK 120
           KWNDAEKWIMNRQ ++ N++KKNA++NQANR+P TNMVRV PE   +D K S  R  DTK
Sbjct: 167 KWNDAEKWIMNRQNMRPNFSKKNAVYNQANRMPGTNMVRVAPESVNHDLKLSLSRVVDTK 226

Query: 121 RVDFCQTASH-TLEKFSFV----PSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSS 175
           RVDFCQ AS   LEKFSF+    PS + QA+GGN +ID CTQSKDL EV Q ++  T+SS
Sbjct: 227 RVDFCQPASQMALEKFSFISPGTPSVSGQAYGGNVLIDQCTQSKDLREVDQRELAITRSS 286

Query: 176 SENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTP--LRSPTSSIPSTPRGRA 233
            E+ +V+P IRSVCMRDMGTEMTP+ASQEPSRT TPVG+TTP  LRSPTSSIPSTPR  A
Sbjct: 287 VEDTAVLPVIRSVCMRDMGTEMTPIASQEPSRTGTPVGSTTPHDLRSPTSSIPSTPRRGA 346

Query: 234 PASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQG 293
           PA TPME    ++++   EN K++L+EQE K KTRREIVALGVQLGKMNIAAWASK++Q 
Sbjct: 347 PAPTPMEHGTDEDAESTCENGKKELTEQEFKLKTRREIVALGVQLGKMNIAAWASKEDQD 406

Query: 294 KNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAE 353
           KNTSS     D EELERIE+EKRA+AW EAEKSKH AR+KREEIKIQAWES+QKAKLEAE
Sbjct: 407 KNTSSV----DAEELERIEFEKRAAAWEEAEKSKHTARYKREEIKIQAWESQQKAKLEAE 462

Query: 354 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQ 413
           MRRIEA VEQ+RAQAQAKMVKKI+M+RQ+SEEKRA AEARK+RDAERTAAQ EYIRQTG+
Sbjct: 463 MRRIEARVEQMRAQAQAKMVKKIAMARQKSEEKRATAEARKNRDAERTAAQAEYIRQTGR 522

Query: 414 IPSSHFTCCGWF 425
           +PSSH+ CCGW 
Sbjct: 523 MPSSHYICCGWL 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525106|ref|XP_003531168.1| PREDICTED: uncharacterized protein LOC100805128 [Glycine max]

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/430 (69%), Positives = 347/430 (80%), Gaps = 8/430 (1%)

Query: 1   MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPS 60
           MQ F K D+ + SAIH +R  ED+NLDYDSNASSSSFEF KGER   N   RS  RP+PS
Sbjct: 114 MQHFQKVDTGSSSAIHAVRAIEDENLDYDSNASSSSFEFDKGERPGNNPATRSLFRPIPS 173

Query: 61  KWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTK 120
           KWNDAEKWIMNRQ IQAN++KKN  HNQANR+P TNM RV PE G YDHK    +A +TK
Sbjct: 174 KWNDAEKWIMNRQNIQANHSKKNTAHNQANRMP-TNMGRVAPESGNYDHKLPIGKATETK 232

Query: 121 RVDFCQTASHT-LEKFSFVPSGTH----QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSS 175
           RVD CQ  SH   EKFSFVPS  H    QAHG N +++S  QSKDL++V +  + C++S+
Sbjct: 233 RVDICQPTSHMGFEKFSFVPSDAHSVSGQAHGRNPVVESLPQSKDLKDVNELGLCCSRST 292

Query: 176 SENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPA 235
            +++SV+P IRSV MRDMGTEMTPV SQEPSRTATPVG+ TPLRSP SS+PSTPR  APA
Sbjct: 293 -DDQSVMPGIRSVAMRDMGTEMTPVPSQEPSRTATPVGSATPLRSPVSSMPSTPRRGAPA 351

Query: 236 STPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKN 295
            TP++ T  ++SQ PVEN KR LSE+E+K KTRREI ALGVQLGKMNIAAWASKDEQ KN
Sbjct: 352 PTPLDNTTNEDSQFPVENGKRHLSEEEMKIKTRREIAALGVQLGKMNIAAWASKDEQEKN 411

Query: 296 TSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMR 355
            SS  ++  ++E ERIE+EKRA+ W EAEKSKH ARFKREEIKIQAWES+QKAKLEAEMR
Sbjct: 412 KSSP-RDMSVQEQERIEFEKRAALWEEAEKSKHTARFKREEIKIQAWESQQKAKLEAEMR 470

Query: 356 RIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIP 415
           RIEA+VEQ+RAQ  AKMVKKI+M+RQRSEEKRAAAEARK+R+AERT AQ EYIRQTG++P
Sbjct: 471 RIEAKVEQMRAQTHAKMVKKIAMARQRSEEKRAAAEARKNREAERTVAQTEYIRQTGRLP 530

Query: 416 SSHFTCCGWF 425
           SS++ CCGW 
Sbjct: 531 SSNYICCGWL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512331|ref|XP_003524873.1| PREDICTED: uncharacterized protein LOC100787239 [Glycine max]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 297/427 (69%), Positives = 346/427 (81%), Gaps = 8/427 (1%)

Query: 4   FSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWN 63
           F K D+ + SAIH +R  ED+NLDYDSNASSSSFEF KGER   N   RS  RP+PSKWN
Sbjct: 117 FPKVDTGSSSAIHAVRAIEDENLDYDSNASSSSFEFDKGERPGNNPATRSLFRPIPSKWN 176

Query: 64  DAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVD 123
           DAEKWIMNRQ IQAN++KK   HNQANR+P TNM RV PE G  DHK  T +  +TKRVD
Sbjct: 177 DAEKWIMNRQNIQANHSKKKTAHNQANRMP-TNMGRVAPESGNCDHKLPTGKVTETKRVD 235

Query: 124 FCQTASHT-LEKFSFVPSGTH----QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSEN 178
           FCQ  SH   EKFSFVPS  H    QAHG N +++S  QSKDL+EV +  + C++S+ ++
Sbjct: 236 FCQPTSHMGFEKFSFVPSDAHSVSGQAHGRNPVVESLPQSKDLKEVNELGLSCSRST-DD 294

Query: 179 ESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTP 238
           +SV P IRSV MRDMGTEMTPV SQEPSRTATPVG+ TPLRSP SS+PSTPR  APA TP
Sbjct: 295 QSVTPGIRSVAMRDMGTEMTPVPSQEPSRTATPVGSATPLRSPVSSMPSTPRRGAPAPTP 354

Query: 239 MEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSS 298
           ++ T  ++SQ PVEN KR+LSE+E+K KTRREI ALGVQLGKMNIAAWASKDEQ KN SS
Sbjct: 355 LDNTTDEDSQFPVENGKRNLSEEEMKIKTRREIAALGVQLGKMNIAAWASKDEQEKNKSS 414

Query: 299 AEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIE 358
            ++ +++ E ERIE+EKRA+ W EAEKSKH ARFKREEIKIQAWES+QKAKLEAEMRRIE
Sbjct: 415 PQE-ANVNEQERIEFEKRAALWEEAEKSKHTARFKREEIKIQAWESQQKAKLEAEMRRIE 473

Query: 359 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSH 418
           A+VEQ+RAQ  AKMVKKI+M+RQRSEEKRAAAEARK+R+AERTAAQ EYIRQTG++PSS+
Sbjct: 474 AKVEQMRAQTHAKMVKKIAMARQRSEEKRAAAEARKNREAERTAAQTEYIRQTGRLPSSN 533

Query: 419 FTCCGWF 425
           + CCGW 
Sbjct: 534 YICCGWL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526393|ref|XP_003531802.1| PREDICTED: uncharacterized protein LOC100790482 [Glycine max]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/430 (69%), Positives = 345/430 (80%), Gaps = 8/430 (1%)

Query: 1   MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPS 60
           MQ F K D+ N SAIH +R  ED+NLDYDSNASSSSFEF KGER   N   RS  RP+PS
Sbjct: 114 MQHFQKVDTGNSSAIHAVRAIEDENLDYDSNASSSSFEFDKGERPGNNPATRSLFRPIPS 173

Query: 61  KWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTK 120
           KWNDAEKWIMNRQ IQAN++KKN  HNQANR+P TNM RV PE G YDHK    +A +TK
Sbjct: 174 KWNDAEKWIMNRQNIQANHSKKNTAHNQANRMP-TNMGRVAPESGNYDHKLPIGKATETK 232

Query: 121 RVDFCQTASHT-LEKFSFVPSGTH----QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSS 175
           RVD CQT S+   EKFSFVPS  H    QAHG N +++S  QSKDL++V +  + C++S+
Sbjct: 233 RVDICQTTSYMGFEKFSFVPSDAHSVSGQAHGRNPVVESLPQSKDLKDVNELGLSCSRST 292

Query: 176 SENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPA 235
            +++SV+P IRSV MRDMGTEMTPV SQEPSRTATPVG+ TPLRSP SS+PSTPR  APA
Sbjct: 293 -DDQSVMPGIRSVAMRDMGTEMTPVPSQEPSRTATPVGSATPLRSPVSSMPSTPRRGAPA 351

Query: 236 STPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKN 295
            TP++ T  ++SQ PVEN KR LSE+E+K KTRREI ALGVQLGKMNIAAWASKDEQ KN
Sbjct: 352 PTPLDNTTNEDSQFPVENGKRHLSEEEMKIKTRREIAALGVQLGKMNIAAWASKDEQEKN 411

Query: 296 TSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMR 355
            SS    S +E+ ERIE+EKRA+ W EAEKSKH ARFKREEIKIQAWES+QKAKLEAEM 
Sbjct: 412 KSSPRDVSVLEQ-ERIEFEKRAALWEEAEKSKHTARFKREEIKIQAWESQQKAKLEAEMG 470

Query: 356 RIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIP 415
           RIEA+VEQ+RAQ  AKMVKKI+M+RQR EEK AAAEARK+R+AERTAAQ EYIRQTG++P
Sbjct: 471 RIEAKVEQMRAQTHAKMVKKIAMARQRLEEKCAAAEARKNREAERTAAQTEYIRQTGRLP 530

Query: 416 SSHFTCCGWF 425
           SS++ CCGW 
Sbjct: 531 SSNYICCGWL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443950|ref|XP_002272255.1| PREDICTED: uncharacterized protein LOC100256651 [Vitis vinifera] gi|297740766|emb|CBI30948.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 294/430 (68%), Positives = 344/430 (80%), Gaps = 18/430 (4%)

Query: 2   QQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSK 61
           QQ+SK D+ N S IHP+R  E++NLDYDSNASSSSFEFHK ERS+ N ++RS SRPMPSK
Sbjct: 109 QQYSKCDTGNSSTIHPVRTLEEENLDYDSNASSSSFEFHK-ERSLHNSVSRSLSRPMPSK 167

Query: 62  WNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKR 121
           WNDAEKWIMNRQ  QANY KKN L +Q NRL   NMVRV PE  + DHK S       KR
Sbjct: 168 WNDAEKWIMNRQNAQANYTKKNVLQSQGNRLAGANMVRVAPESASTDHKLSV------KR 221

Query: 122 VDFCQTASHT-LEKFSFVPSGTH----QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSS 176
           VDFCQ A+   LEKFSFVP+G H    QA+GGNA+ID C Q+KDL+EV   ++ C K S 
Sbjct: 222 VDFCQPAAQMGLEKFSFVPNGAHPISAQANGGNALIDLC-QTKDLKEVDPRELSCLKGSP 280

Query: 177 ENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPR-GRAPA 235
           E+ +   AIR+V MRDMGTEMTP+ SQ+PSRTATPVGATTPLRSPTSS+PSTPR   APA
Sbjct: 281 EDTTGFSAIRAVSMRDMGTEMTPIPSQDPSRTATPVGATTPLRSPTSSLPSTPRRAGAPA 340

Query: 236 STPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKN 295
            TP E    DES+   +   R+LSE+E+K KTR+EIVALGVQLGKMNIAAWASKDE+ K+
Sbjct: 341 PTPAEHMTDDESR---DYRNRELSEEELKLKTRKEIVALGVQLGKMNIAAWASKDEKEKS 397

Query: 296 TSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMR 355
             S E + D+E+ ERIEYE+RA+AW EAEKSKH AR+KREEIKIQAWES+QKAKLEAEMR
Sbjct: 398 AQSGETH-DLEDHERIEYERRAAAWEEAEKSKHAARYKREEIKIQAWESQQKAKLEAEMR 456

Query: 356 RIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIP 415
           RIEA+VEQ+RA AQAKMVKKI+M+RQRSEEKRAAAEA ++R+AE+T+AQ EYIRQTG+IP
Sbjct: 457 RIEAQVEQMRAHAQAKMVKKIAMARQRSEEKRAAAEANRNREAEKTSAQAEYIRQTGRIP 516

Query: 416 SSHFTCCGWF 425
           +S F CCGW 
Sbjct: 517 TSQFVCCGWL 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838010|emb|CAN71634.1| hypothetical protein VITISV_036630 [Vitis vinifera]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/430 (68%), Positives = 343/430 (79%), Gaps = 18/430 (4%)

Query: 2   QQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSK 61
           QQ+SK D+ N S IHP+R  E++NLDYDSNASSSSFEFHK ERS+ N ++RS SRPMPSK
Sbjct: 168 QQYSKCDTGNSSTIHPVRTLEEENLDYDSNASSSSFEFHK-ERSLHNSVSRSLSRPMPSK 226

Query: 62  WNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKR 121
           WNDAEKWIMNRQ  QANY KKN L +Q NRL   NMVRV PE  + DHK S       KR
Sbjct: 227 WNDAEKWIMNRQNAQANYTKKNVLQSQXNRLAGANMVRVAPESASTDHKLSV------KR 280

Query: 122 VDFCQTASHT-LEKFSFVPSGTH----QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSS 176
           VDFCQ A+   LEKFSFVP+G H    QA+GGNA+ D C Q+KDL+EV   ++ C K S 
Sbjct: 281 VDFCQPAAQMGLEKFSFVPNGAHPISAQANGGNALXDLC-QTKDLKEVDPRELSCLKGSP 339

Query: 177 ENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPR-GRAPA 235
           E+ +   AIR+V MRDMGTEMTP+ SQ+PSRTATPVGATTPLRSPTSS+PSTPR   APA
Sbjct: 340 EDTTGFSAIRAVSMRDMGTEMTPIPSQDPSRTATPVGATTPLRSPTSSLPSTPRRAGAPA 399

Query: 236 STPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKN 295
            TP E    DES+   +   R+LSE+E+K KTR+EIVALGVQLGKMNIAAWASKDE+ K+
Sbjct: 400 PTPAEHMTDDESR---DYRNRELSEEELKLKTRKEIVALGVQLGKMNIAAWASKDEKEKS 456

Query: 296 TSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMR 355
             S E + D+E+ ERIEYE+RA+AW EAEKSKH AR+KREEIKIQAWES+QKAKLEAEMR
Sbjct: 457 AQSGETH-DLEDHERIEYERRAAAWEEAEKSKHAARYKREEIKIQAWESQQKAKLEAEMR 515

Query: 356 RIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIP 415
           RIEA+VEQ+RA AQAKMVKKI+M+RQRSEEKRAAAEA ++R+AE+T+AQ EYIRQTG+IP
Sbjct: 516 RIEAQVEQMRAHAQAKMVKKIAMARQRSEEKRAAAEANRNREAEKTSAQAEYIRQTGRIP 575

Query: 416 SSHFTCCGWF 425
           +S F CCGW 
Sbjct: 576 TSQFVCCGWL 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061059|ref|XP_002300338.1| predicted protein [Populus trichocarpa] gi|222847596|gb|EEE85143.1| predicted protein [Populus trichocarpa]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/431 (64%), Positives = 329/431 (76%), Gaps = 19/431 (4%)

Query: 1   MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPS 60
           MQ FSK +  N SA+HP+R  ED+NLDYDSNASSSSFEFH  ERS+ N  ++ FSRPM S
Sbjct: 111 MQPFSKCEKGNSSAVHPVRTVEDENLDYDSNASSSSFEFH-NERSVNNQFSKRFSRPMSS 169

Query: 61  KWNDAEKWIMNRQIIQANYAKKNA-LHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADT 119
           KWNDAEKWIM RQ +Q NY KKN  LHNQANR P T++ RV P    YD + S  R ADT
Sbjct: 170 KWNDAEKWIMKRQNVQPNYVKKNNNLHNQANRNPVTSVDRVAPALSNYDPRSSYSRVADT 229

Query: 120 KRVDFCQ-TASHTLEKFSFVPSGT----HQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKS 174
           K +DFC  +     EKFSF+P G+     Q +G + ++D C QS DL+EV Q ++     
Sbjct: 230 KLIDFCLPSYQQAFEKFSFIPPGSLTISGQENGVDTLVDRCAQSTDLKEVDQREL----- 284

Query: 175 SSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAP 234
                S VP +RSVCMRDMGTEMTPV S EPSRTATPV ATTPLRSPTSSIPSTP+ RAP
Sbjct: 285 -----SFVPVVRSVCMRDMGTEMTPVTSLEPSRTATPVDATTPLRSPTSSIPSTPQRRAP 339

Query: 235 ASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGK 294
           A T  +    D++QH   N K +L+EQE+K KTRREI ALGVQLGKMNIAAWASK++Q K
Sbjct: 340 APTTTDHCSNDDTQHATGNGKIELTEQELKLKTRREIEALGVQLGKMNIAAWASKNDQQK 399

Query: 295 NTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEM 354
           + SS E  ++ME  E+IE+ KRA+AW EAE+SKH AR+KREEIKIQAWES++K KLEAEM
Sbjct: 400 HASSLE-TTEMEN-EQIEFVKRAAAWEEAEQSKHTARYKREEIKIQAWESQRKVKLEAEM 457

Query: 355 RRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQI 414
           RRIEA VEQ+RAQA AKMVKKI+M+RQRSEEK  AAEARK++DAERTAAQ EYIRQTG++
Sbjct: 458 RRIEARVEQMRAQAHAKMVKKIAMTRQRSEEKWVAAEARKNQDAERTAAQAEYIRQTGRM 517

Query: 415 PSSHFTCCGWF 425
           PSS++ CCGWF
Sbjct: 518 PSSNYICCGWF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433601|ref|XP_004134586.1| PREDICTED: uncharacterized protein LOC101217408 [Cucumis sativus]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/428 (64%), Positives = 328/428 (76%), Gaps = 9/428 (2%)

Query: 1   MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPS 60
           MQQ  KGD  N S +HP +  ED+NLDYDSNASSSSFEFHKGERS+ + ++RS  RPMPS
Sbjct: 116 MQQCLKGDGCNSSTVHPSKSVEDENLDYDSNASSSSFEFHKGERSVHSSISRSHLRPMPS 175

Query: 61  KWNDAEKWIMNRQII--QANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAAD 118
           KWNDAEKWI+NRQ     ANY+KKNA      R+ ATNMVRV PE   Y+ + ST RA +
Sbjct: 176 KWNDAEKWIINRQNNGQAANYSKKNAPPTHGYRMAATNMVRVAPESANYELRSSTGRAVE 235

Query: 119 TKRVDFCQTASHT-LEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSE 177
            K VDF Q+      EKFSFVP G + +   N MIDSC+Q KDL+EV     P +K+S E
Sbjct: 236 AKHVDFYQSGLQMGPEKFSFVPVGVYSS-ADNVMIDSCSQIKDLKEVDHK--PSSKASKE 292

Query: 178 NESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPAST 237
           + + +PAIR+V MRDMGTEMTPV SQEPSRTATPVGA+ PLRSPTSSIPSTPR  APA T
Sbjct: 293 DSTGIPAIRAVSMRDMGTEMTPVPSQEPSRTATPVGAS-PLRSPTSSIPSTPRRDAPAPT 351

Query: 238 PMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTS 297
           P+EQ+ I   Q   EN KR+LS  E+K KTRREI+ALG+QLGK NIAAWASKDE  +   
Sbjct: 352 PIEQSPIG-LQQLTENGKRELSADEMKLKTRREILALGMQLGKTNIAAWASKDEPERKRH 410

Query: 298 SAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRI 357
           +AE N+D E  ER E+EKRA+AW E EKSKH AR+KREEIKIQAWE++QK KLEAEMRR+
Sbjct: 411 NAE-NADKEAFERAEFEKRAAAWEEVEKSKHTARYKREEIKIQAWENQQKTKLEAEMRRV 469

Query: 358 EAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSS 417
           EA+VEQ+RAQA+ KM+KKI+M+RQ+SEEKRAAAE RK ++AER AAQ E IRQTG++PSS
Sbjct: 470 EAQVEQMRAQAEVKMMKKIAMTRQKSEEKRAAAECRKKQEAERAAAQAEQIRQTGRMPSS 529

Query: 418 HFTCCGWF 425
            + CCGW 
Sbjct: 530 PYICCGWL 537

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220725|ref|NP_174322.1| Remorin family protein [Arabidopsis thaliana] gi|12322121|gb|AAG51095.1|AC025295_3 hypothetical protein [Arabidopsis thaliana] gi|26452636|dbj|BAC43401.1| unknown protein [Arabidopsis thaliana] gi|29824297|gb|AAP04109.1| unknown protein [Arabidopsis thaliana] gi|332193084|gb|AEE31205.1| Remorin family protein [Arabidopsis thaliana]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/435 (57%), Positives = 319/435 (73%), Gaps = 54/435 (12%)

Query: 1   MQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHK--GERSMQNHMARSF-SRP 57
           +QQF KGD +N+++ H MR  ED+NLDYDSNASSSSFEFH+  GERS QNH +R + SR 
Sbjct: 118 LQQFRKGD-LNMASPHIMRPQEDENLDYDSNASSSSFEFHRARGERSNQNHGSRGYPSRQ 176

Query: 58  MPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAA 117
           MPSKWNDAEKWIM+RQ +     +KN    Q NR+P    VR+VP+   Y+H  S     
Sbjct: 177 MPSKWNDAEKWIMSRQNM---VMRKNG---QGNRIP----VRIVPDNAGYEHNKS----- 221

Query: 118 DTKRVDFCQTAS-HTLEKF-SFVPSGTH----QAHGGNAMIDSCTQSKDLEEVIQTDVPC 171
              R+D CQ++     EKF + VPS  H    Q +GG+++ID  TQS DL +        
Sbjct: 222 ---RMDLCQSSQVDGFEKFPNVVPSAPHPILTQEYGGDSLIDQSTQSNDLAD-------- 270

Query: 172 TKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRG 231
             SS ++ +  PAIRSVCMRDMGTEMTP+ SQEPSR+ TPVGATTPLRSPTSS+PSTPRG
Sbjct: 271 --SSHDHTTGGPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTPRG 328

Query: 232 RAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDE 291
             P  + M +           N++R+LSE+E K KTRREIVALGVQLGKMNIAAWASK  
Sbjct: 329 GQPEESSMSK-----------NTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASK-- 375

Query: 292 QGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLE 351
             +   + + N D EE ++IE+EKRA+AW EAEKSKH AR+KREEI+IQAWES++KAKLE
Sbjct: 376 --EEEENKKNNGDAEEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLE 433

Query: 352 AEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQT 411
           AEMRRIEA+VEQ++A+A+AK++KKI++++QRSEEKRA AEARK+RDAE+  A+ +YIR+T
Sbjct: 434 AEMRRIEAKVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRET 493

Query: 412 GQIPSSHF-TCCGWF 425
           G+IP+S +  CCGWF
Sbjct: 494 GRIPASSYKICCGWF 508

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.557	0.465	0.537	6.7e-65
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.889	0.777	0.371	2.2e-59
TAIR|locus:2008625	347	AT1G67590 "AT1G67590" [Arabido	0.287	0.351	0.354	1.5e-25
TAIR|locus:2197081	442	AT1G53860 "AT1G53860" [Arabido	0.456	0.438	0.252	7.2e-14
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.301	0.673	0.303	6.8e-10
TAIR|locus:2115085	427	AT4G36970 "AT4G36970" [Arabido	0.237	0.236	0.303	1.3e-08
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.305	0.742	0.264	1e-07
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.167	0.358	0.405	2.3e-07
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.430	0.863	0.239	2.6e-07
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.301	0.633	0.276	1.1e-06

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 136/253 (53%), Positives = 176/253 (69%)

Query:   174 SSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGAXXXXXXXXXXXXXXXRGRA 233
             SS ++ +  PAIRSVCMRDMGTEMTP+ SQEPSR+ TPVGA               RG  
Sbjct:   271 SSHDHTTGGPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTPRGGQ 330

Query:   234 PASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQG 293
             P  + M +           N++R+LSE+E K KTRREIVALGVQLGKMNIAAWASK+E+ 
Sbjct:   331 PEESSMSK-----------NTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKEEE- 378

Query:   294 KNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAE 353
                 + + N D EE ++IE+EKRA+AW EAEKSKH AR+KREEI+IQAWES++KAKLEAE
Sbjct:   379 ---ENKKNNGDAEEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAE 435

Query:   354 MRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQTGQ 413
             MRRIEA+VEQ++A+A+AK++KKI++++Q                     A+ +YIR+TG+
Sbjct:   436 MRRIEAKVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGR 495

Query:   414 IPSSHFT-CCGWF 425
             IP+S +  CCGWF
Sbjct:   496 IPASSYKICCGWF 508

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 150/404 (37%), Positives = 216/404 (53%)

Query:    24 DNLDYDSNASSSS-FEFHKGERSMQNHMA--RSFSRPMPSKWNDAEKWIMNRQIIQANYA 80
             DN++   + S+SS FEF K E+   N     RSFS+P PSKW+DA+KWI +     AN  
Sbjct:    98 DNVNEIKSVSASSVFEFQKTEKEKVNQRMPIRSFSKPAPSKWDDAQKWIASPT---ANRP 154

Query:    81 KKNALHNQANRL-PATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVP 139
             K   +    ++  P+      +      +H+   V   DTKR+D  Q       KF    
Sbjct:   155 KTGQVQVPGSKKGPSFGRQSSMKIVEVAEHR--VVEEPDTKRIDVSQVKKDMGNKFGSWE 212

Query:   140 SGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVP--AIRSVCMRDMGTEM 197
               ++             ++  +E   + ++    SS       P    RSV MRDMGTEM
Sbjct:   213 VDSYTTVDSYVKPVLMVENSIVESATEVNLSRHDSSVATAFAQPPSTARSVSMRDMGTEM 272

Query:   198 TPVASQEPSRTATPVGAXXXXXXXXXXXXXXXRGRAPASTPMEQTGIDESQHPVENSKRD 257
             TP+ASQEPSR  TP+ A                 R+P S+     G   S  P+ N  ++
Sbjct:   273 TPIASQEPSRNGTPIRATTPI-------------RSPISSEPSSPGRQASASPMSN--KE 317

Query:   258 LSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRA 317
             LSE+E++ KTRREI+ LG QLGK NIAAWASK+++ K+ S++ K     +  +   E RA
Sbjct:   318 LSEKELQMKTRREIMVLGTQLGKFNIAAWASKEDEDKDASTSLKTKASLQTSKSVSEARA 377

Query:   318 SAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKIS 377
             +AW EAEK+KH+ARF+REE+KIQAWE+ QKAK EAEM++ E +VE+I+ +AQ +++KK++
Sbjct:   378 TAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQDRLMKKLA 437

Query:   378 MSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQTGQIPSSHFTC 421
                +                   T  Q E IR+TG++PS  F+C
Sbjct:   438 TIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSC 481

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008625 AT1G67590 "AT1G67590" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
 Identities = 44/124 (35%), Positives = 79/124 (63%)

Query:   296 TSSAEK-NSDMEELERIE-YEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAE 353
             ++++EK N  +E  + +   E RA AW EAE++K +AR+KREE+KIQAWE+ +K K E E
Sbjct:   210 SNNSEKVNGFVESKKAMSAMEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAEME 269

Query:   354 MRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQTGQ 413
             M+++E + E+++A+A+ K+  K++ +++                   T+ + +YIR++G 
Sbjct:   270 MKKMEVKAERMKARAEEKLANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRSGH 329

Query:   414 IPSS 417
             +PSS
Sbjct:   330 LPSS 333

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197081 AT1G53860 "AT1G53860" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
 Identities = 54/214 (25%), Positives = 105/214 (49%)

Query:   173 KSSSENESVVPAIRSVCMRD----MGTEMTPVASQEPSRTATPVGAXXXXXXXXXXXXXX 228
             K ++E   ++P+      +D    +  E   V  ++     TP+G+              
Sbjct:   187 KLANEVPQILPSTEGFIFKDSDKFLRYEEAQVQHRDMGTEMTPIGSVTTSRCHTPF---- 242

Query:   229 XRGRAPA--STPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAW 286
              +  +PA  +TP + +G      P+  +K  +   E ++K R    +       +  + W
Sbjct:   243 -KSSSPARHNTPSQLSG------PLTETKNVIDISEFEDKLRLSGSSTSQYCYSVT-SHW 294

Query:   287 ASKDEQGKNTSSAEKNSDME-ELERIEYEKRASAWA-EAEKSKHIARFKREEIKIQAWES 344
              S++E+ +  S + ++ DME EL R   E +A  W  E +K K   R++REE KIQAW +
Sbjct:   295 NSREEEEEEISKSLRHFDMESELRRSVSESKAPLWDDEDDKIKFCQRYQREEAKIQAWVN 354

Query:   345 RQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISM 378
              + AK EA+ R++E +++++R+  + K++K++ M
Sbjct:   355 LENAKAEAQSRKLEVKIQKMRSNLEEKLMKRMDM 388

GO:0003677 "DNA binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 41/135 (30%), Positives = 65/135 (48%)

Query:   294 KNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKL 350
             K  SS   + D+  L  +E EK+ S   AW E+EKSK   R +++   + AWE+ +KA +
Sbjct:    60 KKASSGSADRDVI-LADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAV 118

Query:   351 EAEMRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQ 410
             EA++R+IE ++E+ +AQ   KM  K++   +                       G   R 
Sbjct:   119 EAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRA 178

Query:   411 TGQIPSSHFTCCGWF 425
             TG +P +    CG F
Sbjct:   179 TGVVPKA---TCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2115085 AT4G36970 "AT4G36970" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 31/102 (30%), Positives = 59/102 (57%)

Query:   280 KMNIAAWASKDEQGKNTSSAEKNSDMEELE-RIEYEKRASAWAEAEKSKHIARFKREEIK 338
             KM+  A   K  + +  SS     +  E+E   E    +S+W  +E +  +++ +REE K
Sbjct:   265 KMDKGARMIKRPKRRVMSSRIIRREQPEVEDNSEASASSSSWDISEPAMTLSKLQREEAK 324

Query:   339 IQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 380
             I AWE+ QKAK EA +R++E ++E+ ++ +  K++ K+  ++
Sbjct:   325 IAAWENLQKAKAEAAIRKLEVKLEKKKSASMDKILNKLQTAK 366

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 36/136 (26%), Positives = 62/136 (45%)

Query:   287 ASKDEQGKNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWE 343
             A +  + K   S  +++    L R+E +KR S   AW EAEKSK   + +++   + AWE
Sbjct:    40 AKEPTEDKKVGSVHRDA---VLVRLEQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWE 96

Query:   344 SRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAA 403
             + +KA +EAE+++IE ++ + +A    +M  KI+   +                      
Sbjct:    97 NSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEE 156

Query:   404 QGEYIRQTGQIPSSHF 419
                  R TG  P+  F
Sbjct:   157 MAAKYRATGTAPTKLF 172

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 136 (52.9 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query:   308 LERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI 364
             L R+  EKR S   AW E+EKSK   + +++   I AWE+ +KA LEAE++++E ++E+ 
Sbjct:    81 LARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKK 140

Query:   365 RAQAQAKMVKKISM 378
             +A+   KM  KI++
Sbjct:   141 KAEYTEKMKNKIAL 154

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 47/196 (23%), Positives = 91/196 (46%)

Query:   234 PASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQG 293
             PA  P E      +  P + +K D++E++I+     +I      L    +     ++   
Sbjct:    26 PAPAPAEIPAPAPAPTPADVTK-DVAEEKIQNPPPEQIFDDSKAL---TVVEKPVEEPAP 81

Query:   294 KNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKL 350
                +SA  + D++ L  +  EKR S   AW E+EKSK   + +++   + AWE+ +KA +
Sbjct:    82 AKPASASLDRDVK-LADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAV 140

Query:   351 EAEMRRIEAEVEQIRAQAQAKMVKKIS-MSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIR 409
             EA++++IE ++E+ +A+   +M  K++ + ++                        +Y R
Sbjct:   141 EAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKY-R 199

Query:   410 QTGQIPSSHFTCCGWF 425
              TG +P +    CG F
Sbjct:   200 ATGIVPKA---TCGCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 37/134 (27%), Positives = 62/134 (46%)

Query:   291 EQGKNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQK 347
             E+ K   S  +++    L R+E EKR S   AW EAEK K   + +++   I +WE+ +K
Sbjct:    71 EEEKKEGSVNRDA---VLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKK 127

Query:   348 AKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEY 407
             A +EAE++++E ++E+ +A+   +M  KI+   +                          
Sbjct:   128 AAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAK 187

Query:   408 IRQTGQIPSSHFTC 421
              R TG  P   F C
Sbjct:   188 YRATGTAPKKLFGC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	425
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	1e-29
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	4e-04
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	0.003

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score =  110 bits (278), Expect = 1e-29
 Identities = 47/111 (42%), Positives = 78/111 (70%)

Query: 309 ERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQA 368
           ++ E E RA AW EAEK+K   +++REE KIQAWE+++KAK EAE+++IE ++E+ +A+A
Sbjct: 2   KKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEA 61

Query: 369 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHF 419
             K+  K++ + +++EEKRA AEA++  +  +   +   IR TG++PS   
Sbjct: 62  AEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKLS 112

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 246  ESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDM 305
            E+    E +K+D  E +  E+ R        +  +M   A      + +    A++    
Sbjct: 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286

Query: 306  EELERIEYEKRASAWAEAEKSKHIARFKR--EEIKIQAWESRQKA---KLEAEMRRIEAE 360
            EE ++ +  K+A    +A+++K  A   +  +E K +A E+++KA   K +AE  +  AE
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346

Query: 361  VEQIRAQAQAKMVK----KISMSRQRSEEKRAAAEARKSRDAERTAAQ 404
              +  A+A A   +    K   + ++ EE +  A+A K +  E+  A 
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 240  EQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSA 299
            E+   DE++   E +K+    ++  E+ +++  A   +  +   AA A+K E       A
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359

Query: 300  EKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEA 359
            E   +  E    + E+ A   A+A K K   + K +E K +A E ++KA    E+++  A
Sbjct: 1360 EAAEEKAEAAEKKKEE-AKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD---ELKKAAA 1415

Query: 360  EVEQI-RAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 402
              ++   A+ +A+  KK   +++++EE + A EA+K  +  + A
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 287  ASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQ 346
            A K E+ KN +   K  + ++ E    E+    + E +K K     K EE KI+A E ++
Sbjct: 1569 AKKAEEDKNMA-LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627

Query: 347  ----KAKLEAEMRRIEAEV---EQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 399
                K K+E   ++   E    E+++   +   +K    +++  E+K+ A EA+K+ + E
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 400  RTAAQ 404
            + AA+
Sbjct: 1688 KKAAE 1692

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 240  EQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSA 299
            E+   DE++   E  K D ++++ +E  + +      +  K    A   K E+ K  + A
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347

Query: 300  EKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEA 359
             K     E    E E        AEK K  A+ K +  K +A E ++  + + +    + 
Sbjct: 1348 AKAE--AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405

Query: 360  EVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 404
            + ++++  A AK  KK   +++++EEK+ A EA+K  +  + A +
Sbjct: 1406 KADELKKAAAAK--KKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 37/182 (20%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 232  RAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRR---------EIVALGVQLGKMN 282
            +A  +   E+  I+E     E  K+  +E+  K +  +         E     V+  K  
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641

Query: 283  IAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAW 342
             A    K E+ K      K    EE ++ E +K+ +   EA+K++   +   E +K +A 
Sbjct: 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE--EAKKAEEDEKKAAEALKKEAE 1699

Query: 343  ESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 402
            E+++  +L+ +    + + E+++   +   +K     ++  E+K+ A EA+K  + ++  
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759

Query: 403  AQ 404
            A 
Sbjct: 1760 AH 1761

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 7/168 (4%)

Query: 246  ESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDM 305
            E     E +++    ++ +   + E V    +L K   A  A    + +    AE+    
Sbjct: 1161 EDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKA 1220

Query: 306  EELERIE-------YEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIE 358
            E+ ++ E        +K A    +AE+ ++    ++ E    A  +R++A ++AE  R  
Sbjct: 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280

Query: 359  AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGE 406
             E+++   + +A   KK    ++  E K+ A EA+K+ +A++ A + +
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328

Length = 2084

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 2/155 (1%)

Query: 252 ENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERI 311
           E   +  +EQE  ++  +E +    Q  +   A   ++ EQ +    A K +   E ++ 
Sbjct: 91  ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAA--AEQKKK 148

Query: 312 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAK 371
               +A A AEA K K  A  K++  +        KAK EA   + +AE E   A  +AK
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK 208

Query: 372 MVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGE 406
              +     ++  E  A  +A   +      A+ +
Sbjct: 209 AEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243

Length = 387

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 297 SSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRR 356
                ++  +E+  ++ +    A    EK++  A  + ++ ++ A E    A+LE + + 
Sbjct: 140 PENLLHALQQEVLTLKQQLELQA---REKAQSQALAEAQQQELVALE-GLAAELEEKQQE 195

Query: 357 IEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 396
           +EA++EQ++ +A          S++R ++++   +    R
Sbjct: 196 LEAQLEQLQEKAAET-------SQERKQKRKEITDQAAKR 228

Length = 1123

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 286 WASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIA--RFKREEIKIQAWE 343
           +  + +Q K+   AE+    +E ++ E E +    AE E+ K +   R   +E K QA E
Sbjct: 64  YNRQQQQQKSAKRAEEQRKKKEQQQAE-ELQQKQAAEQERLKQLEKERLAAQEQKKQAEE 122

Query: 344 SRQKAKLE-----------AEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSE-EKRAAAE 391
           + ++A L+           A   + +AE E  RA A AK     +  +  +E  K+AAAE
Sbjct: 123 AAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182

Query: 392 ARKSRDAERTAA 403
           A+K  +AE  A 
Sbjct: 183 AKKKAEAEAAAK 194

Length = 387

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 244 IDESQHPVENSKRDLSEQE---IKEKTRREIVALGVQLGKMNIAAWASK-DEQGKNTSSA 299
            +++Q   E       E     +    R++   L  Q     I A   +  E+ K  ++ 
Sbjct: 302 EEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANI 361

Query: 300 EKNSDMEELERIEYEKRASAWAEAEKSKHI-----ARFKREEIKIQAWESRQKAKLEAEM 354
            +    +    +E  +       AE++  +     A  ++ EI ++A  ++ +A+ +A  
Sbjct: 362 AEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAE 421

Query: 355 RRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQ 410
            + EAE  + + +A+A             E KRA AEA +       A   + + Q
Sbjct: 422 IKAEAEAIREKGKAEA-------------EAKRALAEAIQVLGDAAAAELFKALVQ 464

Length = 548

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	425
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	96.66
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	84.13

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=1.8e-35  Score=255.22  Aligned_cols=109  Identities=50%  Similarity=0.727  Sum_probs=106.6

Q ss_pred             HHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014418          310 RIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAA  389 (425)
Q Consensus       310 k~~~EsrAaAWEeaEkaK~~~RykREEakI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKlA~a~rkAEekRA~  389 (425)
                      +..++++++|||++|++|+++||+|++++|++|||+||+|||++|+|+|++||+||++++|||+|+|+.||++||++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhcCCCCCCC
Q 014418          390 AEARKSRDAERTAAQGEYIRQTGQIPSSH  418 (425)
Q Consensus       390 AEAkr~ee~~K~~EkA~kiR~TGk~Pss~  418 (425)
                      ++++|+++++++.++|++||+||++|+.|
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~~~  110 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPSKC  110 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCccc
Confidence            99999999999999999999999999975

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=96.66  E-value=0.035  Score=48.71  Aligned_cols=79  Identities=27%  Similarity=0.352  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 014418          333 KREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQT  411 (425)
Q Consensus       333 kREEakI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKlA~a~rkAEekRA~AEAkr~ee~~K~~EkA~kiR~T  411 (425)
                      +..+++|.+||..+++|+....++.|.++.-==..--.|..-+|..+..+.|.+|+.+..+-.+.+..+..+|+-.|..
T Consensus         3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999976642111112233445566777888999999999998888888888877754

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=84.13  E-value=27  Score=33.60  Aligned_cols=43  Identities=33%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 014418          359 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERT  401 (425)
Q Consensus       359 ~KLEkkRA~a~EK~~NKlA~a~rkAEekRA~AEAkr~ee~~K~  401 (425)
                      ...+..+..+.+.+...++.++...+..|..+...-...+..+
T Consensus       134 ~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~  176 (204)
T PRK09174        134 AKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEET  176 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555556666666666666655555544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	425
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-08
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-04

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 26/170 (15%), Positives = 65/170 (38%), Gaps = 1/170 (0%)

Query: 237 TPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNT 296
           + ++   ++       ++ +   +  I+  T  +  A   +  ++   A   + E+ K  
Sbjct: 636 SSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEA-RGRLERQKIL 694

Query: 297 SSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRR 356
             +E     +EL  +E    A       K++  +R +   I+ +    + K K +A    
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754

Query: 357 IEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGE 406
            EAE+E+++   + +++   +       + +  A     +  E T A G 
Sbjct: 755 TEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGP 804

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 24/185 (12%), Positives = 55/185 (29%), Gaps = 10/185 (5%)

Query: 233 APASTPMEQ---TGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASK 289
           A AS   +          +  V   +             +           + ++   S 
Sbjct: 582 AVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVS---SV 638

Query: 290 DEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAK 349
           D Q            ++   ++  E        ++++      +R E + +    RQK  
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITT----NSQEAAAKHEAQRLEQEARGRLERQKIL 694

Query: 350 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIR 409
            ++E  +   E+ ++ A + A      + +   S  + A  E   S    +  AQ   I 
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754

Query: 410 QTGQI 414
              ++
Sbjct: 755 TEAEL 759

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 260 EQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASA 319
            Q     +  ++ ++     +   A   S     + T+++++ +   E +R+E E R   
Sbjct: 629 PQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRL 688

Query: 320 -----WAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVK 374
                  ++E  K        E    A ES   AK EAE R   A +E   +  QAK+  
Sbjct: 689 ERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKA 748

Query: 375 KISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQ 410
           +       +E +R            R   + E  + 
Sbjct: 749 QALAIETEAELERVKKVREMELIYARAQLELEVSKA 784

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 12/192 (6%)

Query: 230 RGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASK 289
           +   P             Q  +E +          E  R E  A G +L +  I   +  
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARG-RLERQKILDQSEA 699

Query: 290 DEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWE------ 343
           ++  K     E  S   E      +  A + AEA + +      + ++K QA        
Sbjct: 700 EKARKELLELEAMSMAVESTGNA-KAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758

Query: 344 -SRQKAKLEAEMRRI--EAEVEQIRAQAQAKM-VKKISMSRQRSEEKRAAAEARKSRDAE 399
             R K   E E+     + E+E  +AQ  A +  KK     +          A    + +
Sbjct: 759 LERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818

Query: 400 RTAAQGEYIRQT 411
               Q   ++ T
Sbjct: 819 VKLLQSLGLKST 830

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00