Citrus Sinensis ID: 014435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVIP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHcccEEEEEccccHHHHHccccccEEcccccccccccccccccccccHHHHHHHccccccccccccccccEEEEEccccccccccHHHHccHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEccHHHHHHHHHcccccccccccccccEEccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEcccccHHHHHcccccccccccccccccEEccccccccHHHHHHHHccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccEEEEcccEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHccccccEEEEEEccccccccccccccccHHHHHHHccccccccccccccccEEEEEEccccccccccEEEEcHcHHHHHHHHccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccccEcccccHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEcccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccEEEEEEccccccccccccccccccEEEcccHHHEEEccccccHHHHHHHHHccHcHHHEEEcc
Coil and Loop (DISEMBL)
meksgygrdgiyrslrpplvlpsdpsfsmFKSIVIKVSHsfrhlgitkkdvvlifapnsihfpiCFLGVIAIGAiastanpvyTVSELskqvkdsnpklvitvpelwdkvkdlnlpavllgskdkvsssglisrsskivSFHDLIelsgsvtdipdvsvkqTDAAALLYssgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDqlqkgncvvsmGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLvrkfdisslklvgsgaaplgkELMEDCqknipgatifqgygmtetcapislenplvgvrrsgsagtLVAGVEAQIVsvdtlkplppnqlgeiwvrgpnvtpVFELTVNCNLFsyfrsndhndffcKLFQVAPAELEgllvshpeildavvip
Flexible Loop (DISEMBL)
meksgygrdgiyrslrpplvlpSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSElskqvkdsnpkLVITVPELWDKVKDLNLPAVllgskdkvsssglisrsskIVSFHDLIELSgsvtdipdvSVKQTDAAALLYSsgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEgllvshpeildavvip
Low Complexity Region (SEG)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDkvsssglisrsskivsFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVIP
Disordered region (IsUnstruct)
***********Y**L**PLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK*******LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVV**
Disordered Region (DISOPRED)
****GYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVIP
Disordered Region (DISEMBL)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK**********RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVIP
Disordered Region (DISPRO)
*EKSGYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVIP
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.990	0.772	0.563	1e-146
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.988	0.759	0.453	1e-106
P31687	562	4-coumarate--CoA ligase 2	no	no	0.929	0.701	0.395	2e-67
Q84P25	565	4-coumarate--CoA ligase-l	no	no	0.908	0.681	0.383	1e-65
P41636	537	4-coumarate--CoA ligase O	N/A	no	0.896	0.707	0.360	6e-65
P31685	545	4-coumarate--CoA ligase 2	N/A	no	0.872	0.678	0.385	5e-64
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.915	0.710	0.368	6e-64
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.877	0.663	0.369	7e-64
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.872	0.678	0.385	1e-63
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.929	0.720	0.363	4e-63

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  519 bits (1337), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/477 (56%), Positives = 332/477 (69%), Gaps = 57/477 (11%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRP LVLP DP                              +FS  
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+P +G 
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------EL 377
           R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+   +             + 
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKS 418

Query: 378 TVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVVIP 424
            V+     YF  N+  + +           K FQVAPAELEGLLVSHP+ILDAVVIP
Sbjct: 419 WVHTGDLGYF--NEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIP 473

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/474 (45%), Positives = 286/474 (60%), Gaps = 55/474 (11%)

Query: 4   SGYGRDGIYRSLRPPLVLPSDP-------------------------------SFSMFKS 32
           +GYG DG+YRSLRPP  + SDP                               +F+  +S
Sbjct: 9   AGYGADGVYRSLRPPAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGRALTFAELRS 68

Query: 33  IVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 91
            V+  + +     G+   D VL+ APN + +P+CF  V A+GA+ +T NP YT  E++KQ
Sbjct: 69  AVLSTAVALSSRAGVRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREIAKQ 128

Query: 92  VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 151
           V D+  KLVIT+  L  K+  L LP +LL      +++ L   ++  V+ +  +      
Sbjct: 129 VSDARAKLVITISALVPKIAGLRLPVILLDDDANAAAASLPPDAT--VTLYTNLVAGVKE 186

Query: 152 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 211
            D     +KQ+D AALLYSSGTTG SKGVILTH+NFIAA+ M+++ Q+   E  +V LC 
Sbjct: 187 ADYRRPPIKQSDTAALLYSSGTTGDSKGVILTHRNFIAAARMVTSDQDERREGPNVFLCF 246

Query: 212 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 271
           LPMFH+FGLSVI Y QL +GN +++M +FDI   + A++++RVT  + VPP+I+ALAK+ 
Sbjct: 247 LPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRHRVTHLFCVPPVIIALAKHG 306

Query: 272 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG-V 330
              K+D+SSLK +GSGAAPLGK++ME   K  P + I QGYGMTETC  ISLE P  G  
Sbjct: 307 KAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQGYGMTETCGIISLEYPEKGQA 366

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFS----Y 386
           R  GS GTLV+GVEA+IV + TLK LPPNQ+GEI VRGPNV   +   V    F+    +
Sbjct: 367 REFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNVMQGYFNNVQATEFTIKQGW 426

Query: 387 FRSNDHNDF----------------FCKLFQVAPAELEGLLVSHPEILDAVVIP 424
             + D   F                  K FQ+APAELEGLL+SHPEILDAVVIP
Sbjct: 427 LHTGDLGYFDGGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIP 480

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/447 (39%), Positives = 248/447 (55%), Gaps = 53/447 (11%)

Query: 16  RPPLVL-PSDPSFSMFKSIVI--KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 72
           RP L++ P+  +F+   + +I  K++    +LGI K DVV+I   NS  F   FL +  I
Sbjct: 56  RPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSADFVFSFLAISMI 115

Query: 73  GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 132
           GA+A+TANP YT  E+ KQ   S  KL+IT     DK++  N     LG   KV +  + 
Sbjct: 116 GAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLR--NHDGAKLGEDFKVVT--VD 171

Query: 133 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 192
                 + F  L E + S  D+P+V +   DA A+ +SSGTTG+ KGVILTHK     SL
Sbjct: 172 DPPENCLHFSVLSEANES--DVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHK-----SL 224

Query: 193 MISAHQELVGE-------LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA 245
             S  Q++ GE        + V+LCVLP+FH+F L+ +L   L+ G+ V+ M KF+I   
Sbjct: 225 TTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTL 284

Query: 246 LRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 305
           L  I+++RV+V  VVPP++LALAKN +V  FD+SS++LV SGAAPLGKEL E  +  +P 
Sbjct: 285 LELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRNRMPQ 344

Query: 306 ATIFQGYGMTETCAPISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ 360
           A + QGYGMTE    +S+     + P     +SGS GT+V   E ++V  +T + L  NQ
Sbjct: 345 AVLGQGYGMTEAGPVLSMCLGFAKQPF--QTKSGSCGTVVRNAELKVVDPETGRSLGYNQ 402

Query: 361 LGEIWVRGPNVTPVF-----------------------ELTVNCNLFSYFRSNDHNDFFC 397
            GEI +RG  +   +                        +  +  +F   R  +   +  
Sbjct: 403 PGEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKY-- 460

Query: 398 KLFQVAPAELEGLLVSHPEILDAVVIP 424
           K FQV PAELEGLLVSHP I DA V+P
Sbjct: 461 KGFQVPPAELEGLLVSHPSIADAAVVP 487

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2

 Score =  250 bits (639), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 229/417 (54%), Gaps = 32/417 (7%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V +V+     LG+ K +VV+I +PNSI FPI  L V+++GAI +TANP+ T  E+SKQ+ 
Sbjct: 84  VERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQIG 143

Query: 94  DSNPKLVITVPELWDKV---KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           DS P L  T  +L  K+    + NLP VL+     V S     R   +     +IE   S
Sbjct: 144 DSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDY-HVPSQSYGDRVKLVGRLETMIETEPS 202

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
            + +    V Q D AALLYSSGTTG SKGV+L+H+N IA   ++ A++   G L+   +C
Sbjct: 203 ESRVKQ-RVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA---LVQAYRARFG-LEQRTIC 257

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL--A 268
            +PM H+FG        +  G  +V + KFD+   L A+E +R +   +VPPI++A+   
Sbjct: 258 TIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMVNG 317

Query: 269 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV 328
            N +  K+D+SSL  V +G APL +E+ E   +N P   I QGYG+TE+ A  +      
Sbjct: 318 ANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTESTAIAASMFNKE 377

Query: 329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNC-NL 383
             +R G++G L   VE +IV  DT + L  NQ GE+W+R P V   +    E T +  + 
Sbjct: 378 ETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYFKNKEATASTIDS 437

Query: 384 FSYFRSND----HNDFF------------CKLFQVAPAELEGLLVSHPEILDAVVIP 424
             + ++ D      D F            C  +QVAPAELE LL++HPEI DA VIP
Sbjct: 438 EGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHPEIADAAVIP 494

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  248 bits (633), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 156/433 (36%), Positives = 231/433 (53%), Gaps = 53/433 (12%)

Query: 27  FSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVS 86
           FS  + I  KV+     LG+ +  VV++  PN I F   F+G    GAI +TANP Y   
Sbjct: 55  FSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPG 114

Query: 87  ELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 146
           E++KQ K +  ++++T+    +K+ DL    VL+ + D     G           H  + 
Sbjct: 115 EIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEG---------CQHISVL 165

Query: 147 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 203
                T  P V +   D  AL YSSGTTG+ KGV+LTHK  ++     S  Q++ GE   
Sbjct: 166 TEADETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVS-----SVAQQVDGENPN 220

Query: 204 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 259
                D V+LCVLP+FH++ L+ +L   L+ G   + M KF++   L  I+KY+VTV  +
Sbjct: 221 LYFHSDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPI 280

Query: 260 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 319
           VPPI+L + K+ +V ++D+SS++++ SGAAPLGKEL +  ++  P A   QGYGMTE   
Sbjct: 281 VPPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGP 340

Query: 320 PISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPV 374
            +++     +NP     +SGS GT+V   + +I+  +T + LP NQ GEI +RGP +   
Sbjct: 341 VLAMNLAFAKNPF--PVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKG 398

Query: 375 F-------------ELTVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLL 411
           +             E  ++     Y   +D  + F           K FQVAPAELE LL
Sbjct: 399 YINDPESTAATIDEEGWLHTGDVEYI--DDDEEIFIVDRVKEIIKYKGFQVAPAELEALL 456

Query: 412 VSHPEILDAVVIP 424
           V+HP I DA V+P
Sbjct: 457 VAHPSIADAAVVP 469

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31685|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1

 Score =  245 bits (625), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 164/425 (38%), Positives = 231/425 (54%), Gaps = 55/425 (12%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           KV+     LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S
Sbjct: 67  KVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKAS 126

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
           + K+VIT      KVKD  +       ++ +    + S     V F +LI+      +IP
Sbjct: 127 SAKIVITQACFAGKVKDYAI-------ENDLKVICVDSAPEGCVHFSELIQ--SDEHEIP 177

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVV 208
           DV ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V+
Sbjct: 178 DVKIQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSDDVL 232

Query: 209 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 268
           +CVLP+FH++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+A
Sbjct: 233 MCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIA 292

Query: 269 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPIS 322
           K+ LV  +D+SS++ V SGAAPLGKEL +  +   P A + QGYGMTE       C   +
Sbjct: 293 KSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFA 352

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELT 378
            E   +   +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +   +    E T
Sbjct: 353 KEPFDI---KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEAT 409

Query: 379 VNC-------------------NLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILD 419
                                  LF   R  +   +  K FQVAPAELE LL++HP+I D
Sbjct: 410 ARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKY--KGFQVAPAELEALLINHPDISD 467

Query: 420 AVVIP 424
           A V+P
Sbjct: 468 AAVVP 472

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  245 bits (625), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 157/426 (36%), Positives = 235/426 (55%), Gaps = 38/426 (8%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F+     V  V+     +GI K  VVL+ +PNSI FP+  L V+++GAI +T NP+ T 
Sbjct: 59  TFTELWRAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTS 118

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHD 143
           +E++KQ+KDSNP L  T  +L  K+      LP VL+  +++V S G + R        +
Sbjct: 119 NEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLM-DEERVDSVGDVRR------LVE 171

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
           +++   S   + +  V Q D A LLYSSGTTG+SKGVI +H+N IA   M+       G 
Sbjct: 172 MMKKEPSGNRVKE-RVDQDDTATLLYSSGTTGMSKGVISSHRNLIA---MVQTIVNRFGS 227

Query: 204 LD--HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 261
            D     +C +PMFH++GL+      L  G+ ++ + KF++   + AI KY+ T   +VP
Sbjct: 228 DDGEQRFICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVP 287

Query: 262 PIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 319
           PI++A+    + +  K+D+SS+  V  G APL KE+ E   +  P   I QGYG+TE+  
Sbjct: 288 PILVAMVNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTG 347

Query: 320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---E 376
             +  + +   RR G+AG L A +E +IV   T + L P Q GE+W++GP++   +   E
Sbjct: 348 IGASTDTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNE 407

Query: 377 LTVNCNLFS--YFRSND----HNDFFC------------KLFQVAPAELEGLLVSHPEIL 418
              +  L S  + R+ D      D F             K +QVAPAELE LL++HPEI 
Sbjct: 408 EATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEIT 467

Query: 419 DAVVIP 424
           DA VIP
Sbjct: 468 DAAVIP 473

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  244 bits (624), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 159/430 (36%), Positives = 237/430 (55%), Gaps = 58/430 (13%)

Query: 33  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 92
           I  +V+     LGI K DV++I   NS  F   F+G   IGA+++TANP YT  EL KQ+
Sbjct: 84  ICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQL 143

Query: 93  KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS-----FHDLIEL 147
           K S  KL+IT  +  DK+K+L     L+ + D+ +    +  S+ I       F + +++
Sbjct: 144 KSSGAKLIITHSQYVDKLKNLGENLTLI-TTDEPTPENCLPFSTLITDDETNPFQETVDI 202

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---- 203
            G             DAAAL +SSGTTG+ KGV+LTHK     SL+ S  Q++ G+    
Sbjct: 203 GGD------------DAAALPFSSGTTGLPKGVVLTHK-----SLITSVAQQVDGDNPNL 245

Query: 204 ---LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV 260
               + V+LCVLP+FH++ L+ +L + L+ G  V+ M KF+I   L  I+++RVT+  +V
Sbjct: 246 YLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALV 305

Query: 261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
           PP+++ALAKN  V  +D+SS++ V SGAAPLGKEL +  ++ +P A + QGYGMTE    
Sbjct: 306 PPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPV 365

Query: 321 ISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
           +S+     + P+    +SGS GT+V   E ++V ++T   L  NQ GEI +RG  +   +
Sbjct: 366 LSMSLGFAKEPI--PTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEY 423

Query: 376 -------------ELTVNCNLFSYFRSNDHNDFFCKL--------FQVAPAELEGLLVSH 414
                        E  ++     Y   +D      +L        FQV PAELE LL++H
Sbjct: 424 LNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPPAELESLLINH 483

Query: 415 PEILDAVVIP 424
             I DA V+P
Sbjct: 484 HSIADAAVVP 493

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/425 (38%), Positives = 231/425 (54%), Gaps = 55/425 (12%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           KV+     LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S
Sbjct: 67  KVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKAS 126

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
           + K+VIT      KVKD  +       ++ +    + S     V F +LI+      +IP
Sbjct: 127 SAKIVITQACFAGKVKDYAI-------ENDLKVICVDSVPEGCVHFSELIQ--SDEHEIP 177

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVV 208
           DV ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V+
Sbjct: 178 DVKIQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSDDVL 232

Query: 209 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 268
           +CVLP+FH++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+A
Sbjct: 233 MCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIA 292

Query: 269 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPIS 322
           K+ LV  +D+SS++ V SGAAPLGKEL +  +   P A + QGYGMTE       C   +
Sbjct: 293 KSPLVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFA 352

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELT 378
            E   +   +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +   +    E T
Sbjct: 353 KEPFDI---KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEAT 409

Query: 379 VNC-------------------NLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILD 419
                                  LF   R  +   +  K FQVAPAELE LL++HP+I D
Sbjct: 410 ARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKY--KGFQVAPAELEALLINHPDISD 467

Query: 420 AVVIP 424
           A V+P
Sbjct: 468 AAVVP 472

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  242 bits (618), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 163/448 (36%), Positives = 242/448 (54%), Gaps = 54/448 (12%)

Query: 14  SLRPPLVLPSDPSFSMFKSIVI---KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 70
           S RP L+  ++     +  + +   KV+     LGI +KD ++I  PNS  F   F+G  
Sbjct: 44  SSRPCLINGANDQIYTYAEVELTCRKVAVGLNKLGIQQKDTIMILLPNSPEFVFAFMGAS 103

Query: 71  AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSG 130
            +GAI++ ANP++T +E+ KQ K S+ K++IT      KVKD         S++ V    
Sbjct: 104 YLGAISTMANPLFTPAEVVKQAKASSAKIIITQSCFVGKVKDY-------ASENDVKVIC 156

Query: 131 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 190
           + S     + F +L +      +IP+V ++  D  AL YSSGTTG+ KGV+LTHK     
Sbjct: 157 IDSAPEGCLHFSELTQ--SDEHEIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKG---- 210

Query: 191 SLMISAHQELVGE-------LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIE 243
            L+ S  Q++ GE        + V++CVLP+FH++ L+ IL   L+ G  ++ M KFDI 
Sbjct: 211 -LVTSVAQQVDGENANLYMHSEDVLMCVLPLFHIYSLNSILLCGLRVGAAILIMQKFDIA 269

Query: 244 MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 303
             L  I+KY+V++   VPPI+LA+AK+ +V  +D+SS++ V SGAAPLGKEL +  +   
Sbjct: 270 PFLELIQKYKVSIGPFVPPIVLAIAKSPIVDSYDLSSVRTVMSGAAPLGKELEDAVRTKF 329

Query: 304 PGATIFQGYGMTET------CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 357
           P A + QGYGMTE       C   + E   +   +SG+ GT+V   E +IV  DT   LP
Sbjct: 330 PNAKLGQGYGMTEAGPVLAMCLAFAKEPFDI---KSGACGTVVRNAEMKIVDPDTGCSLP 386

Query: 358 PNQLGEIWVRGPNVTPVF-----ELTVNCNLFSYFRSND------HNDFFC--------- 397
            NQ GEI +RG  +   +       T   +   +  + D       ++ F          
Sbjct: 387 RNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIK 446

Query: 398 -KLFQVAPAELEGLLVSHPEILDAVVIP 424
            K FQVAPAE+E LL++HP I DA V+P
Sbjct: 447 YKGFQVAPAEIEALLLNHPNISDAAVVP 474

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
255565415	542	AMP dependent CoA ligase, putative [Rici	0.990	0.774	0.627	1e-160
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.988	0.771	0.605	1e-154
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.988	0.771	0.601	1e-152
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.988	0.771	0.595	1e-152
225436506	544	PREDICTED: 4-coumarate--CoA ligase-like	0.990	0.772	0.576	1e-148
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.990	0.772	0.574	1e-147
312281669	543	unnamed protein product [Thellungiella h	0.988	0.771	0.568	1e-146
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.990	0.772	0.563	1e-144
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.988	0.771	0.593	1e-144
356539342	548	PREDICTED: 4-coumarate--CoA ligase-like	0.988	0.764	0.562	1e-144

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/475 (62%), Positives = 344/475 (72%), Gaps = 55/475 (11%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRP LVLP DP                              SFS  
Sbjct: 1   MEKSGYGRDGIYRSLRPLLVLPKDPNLSMVSFLFRNCNSYPHKPALIDADLSKTLSFSQL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KSIVIKVSH    LGI+K DVVLIFAPNS  FPICFL + +IGAIA+TANP+YT +E+SK
Sbjct: 61  KSIVIKVSHGLLKLGISKNDVVLIFAPNSYQFPICFLAITSIGAIATTANPLYTTTEISK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           Q+KDSNPKLVITVPELW+KVKD NLPAV LG+K+ +    LI  +S+I SF  L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWNKVKDFNLPAVFLGAKESL----LIEPNSRIKSFDHLVELGGS 176

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
            ++ P ++VKQTD A LLYSSGTTG+SKGVILTH NFIAAS MI+  QE+ GEL +V LC
Sbjct: 177 NSEFPTINVKQTDIATLLYSSGTTGISKGVILTHGNFIAASQMITMDQEIAGELHNVFLC 236

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+VI Y QLQ GN VVSMGKFD E+ L+A+EKYR+T  WVVPP+ILALAK 
Sbjct: 237 FLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKYRITHLWVVPPVILALAKQ 296

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           SLV+K+D+SSL+ VGSGAAPL KELME+C K IP A I QGYGMTET   +S+ENP +GV
Sbjct: 297 SLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQGYGMTETTGIVSVENPRIGV 356

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------ELTVN--- 380
           R SGSAGTL AG+EAQI+SVDTLKPLPPNQLGEIWVRGPN+   +       + T++   
Sbjct: 357 RHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNMMRGYFNNPQATKQTIDKKG 416

Query: 381 ---CNLFSYFRSN------DHNDFFCKL--FQVAPAELEGLLVSHPEILDAVVIP 424
                   YF  +      D      K   FQVAPAELEGLLVSHPE+LDAVVIP
Sbjct: 417 WLHTGDLGYFDEDGKLYVVDRIKELIKYKGFQVAPAELEGLLVSHPELLDAVVIP 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/477 (60%), Positives = 336/477 (70%), Gaps = 58/477 (12%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRP LVLP D                               SFS  
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPRDSNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KSIVIK +H   +LGI+K DV+LIFAPNS  FP CFL + +IGA+A+TANP+YT SELSK
Sbjct: 61  KSIVIKFAHGLLNLGISKNDVILIFAPNSYQFPTCFLAITSIGAVATTANPLYTTSELSK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           Q+KDSNPKLVITVPELWDKVK  NLPAV LG K+    S  +   S+I SFH L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWDKVKGFNLPAVFLGPKE---VSLPLESGSRIRSFHSLVELGGS 177

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
            ++ P   VKQ+D A LLYSSGTTGVSKGVILTH NFIAASLM+S  Q + GE+ +V LC
Sbjct: 178 NSEFPVSDVKQSDIATLLYSSGTTGVSKGVILTHGNFIAASLMVSMDQVMAGEIHNVFLC 237

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM LR IEKYRVT  WVVPP+ILAL+K 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKYRVTHMWVVPPVILALSKQ 297

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           +LV+K+D+SSL+ +GSGAAPLGK+LM++C KN+P  TI QG+GMTETC  +SLE+P +GV
Sbjct: 298 NLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQGFGMTETCGIVSLEDPRIGV 357

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------EL 377
           R SGSAG L AG+EAQI+SV+T KPLPPNQLGEIWVRGPN+   +             + 
Sbjct: 358 RHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNMMRGYFNNPQATKDTIDKKG 417

Query: 378 TVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVVIP 424
            V+     YF  +D    F           K FQVAPAELEGLLVSHPEILDAVV P
Sbjct: 418 WVHTGDLGYF--DDDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVTP 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/477 (60%), Positives = 335/477 (70%), Gaps = 58/477 (12%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRP LVLP DP                              SFS  
Sbjct: 1   MEKSGYGRDGIYRSLRPKLVLPKDPNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KSIVIKV+H   +LGI+K DVVLIFAPNS  FPICFL + + GAIA+TANP+YT SELSK
Sbjct: 61  KSIVIKVAHGLLNLGISKNDVVLIFAPNSYQFPICFLAITSTGAIATTANPLYTTSELSK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           Q+KDSNPKL+ITVPELWDKVK  NLPAV LG K +VS    +   S+I SF  L+ L GS
Sbjct: 121 QIKDSNPKLIITVPELWDKVKGFNLPAVFLGPK-RVSLP--LESGSRITSFDSLVGLGGS 177

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
            +  P  +VKQ+D + LLYSSGTTGVSKGVILTH NFIAASLM++  Q + GE+  V LC
Sbjct: 178 NSQFPSSNVKQSDISTLLYSSGTTGVSKGVILTHGNFIAASLMVTMDQAMAGEMHDVFLC 237

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM L+ IEK+RVT  WVVPP++LALAK 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKHRVTDMWVVPPVVLALAKQ 297

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
            +V+K+DISSL+ +GSGAAPLGK+LM++C KN+P   I QGYGMTETC  +S+E+  +GV
Sbjct: 298 DMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQGYGMTETCGIVSVEDSRLGV 357

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------EL 377
           R SGSAG L AG+EAQIVSV+TLKPLPPNQLGEIWVRGPN+   +             + 
Sbjct: 358 RHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNMMRGYFNNPQATKDTMDKKG 417

Query: 378 TVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVVIP 424
            V+     YF  +D    F           K FQVAPAELEGLLVSHP+ILDAVVIP
Sbjct: 418 WVHTGDVGYF--DDDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPQILDAVVIP 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/477 (59%), Positives = 346/477 (72%), Gaps = 58/477 (12%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRPPL LP++                               SFS F
Sbjct: 1   MEKSGYGRDGIYRSLRPPLHLPNNNNLSMVSFLFRNSSSYPQKPALIDSETNQILSFSHF 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KS VIKVSH F +LGI K DVVLI+APNSIHFP+CFLG+IA GAIA+T+NP+YTVSELSK
Sbjct: 61  KSTVIKVSHGFLNLGIKKNDVVLIYAPNSIHFPVCFLGIIASGAIATTSNPLYTVSELSK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           QVKDSNPKL+ITVP+L +KVK  NLP +L+G   +  SS     S K+++F+DL+ L GS
Sbjct: 121 QVKDSNPKLIITVPQLLEKVKGFNLPTILIGPDSEQESS-----SDKVMTFNDLVNLGGS 175

Query: 151 V-TDIPDV-SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 208
             ++ P V   KQ+D AALLYSSGTTG+SKGV+LTHKNFIA+SLM++  Q+LVGE+D+V 
Sbjct: 176 SGSEFPIVDDFKQSDTAALLYSSGTTGMSKGVVLTHKNFIASSLMVTMEQDLVGEMDNVF 235

Query: 209 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 268
           LC LPMFHVFGL++I Y QLQ+GN V+SM +FD+E  L+ +EKY+VT  WVVPP+ILAL+
Sbjct: 236 LCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKYKVTHLWVVPPVILALS 295

Query: 269 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV 328
           KNS+V+KF++SS+K +GSGAAPLGK+LME+C K +P   + QGYGMTETC  +S+E+   
Sbjct: 296 KNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQGYGMTETCGIVSMEDIRG 355

Query: 329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------ELT--- 378
           G R SGSAG L +GVEAQIVSVDTLKPLPPNQLGEIWV+GPN+   +       +LT   
Sbjct: 356 GKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPNMMQGYFNNPQATKLTIDK 415

Query: 379 ---VNCNLFSYFRSNDH--------NDFFCKLFQVAPAELEGLLVSHPEILDAVVIP 424
              V+     YF  + H             K FQVAPAELEGLLVSHPEILDAVVIP
Sbjct: 416 KGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIP 472

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436506|ref|XP_002276353.1| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/477 (57%), Positives = 339/477 (71%), Gaps = 57/477 (11%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSL PPLVLP DP                              +F+ F
Sbjct: 1   MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFAQF 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KS+VIKVSH    LG+ K DVVLIFAPNSI +P+CF GVIAIGAIA+TANP+YTV+E+ K
Sbjct: 61  KSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEIQK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           QVKDSN KLVIT+P+LW+KVK LNLPAV+L S D  +S   I    KI  F DL++++G 
Sbjct: 121 QVKDSNAKLVITIPQLWEKVKALNLPAVILDSAD--TSKDTIQSPLKITYFSDLVKMAGE 178

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
           V+  P VS+ Q D AALLYSSGTTG SKGVILTH NF+AA+LM++  +EL+GE+ +V LC
Sbjct: 179 VSHFPKVSITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLC 238

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+V++  QLQ G  +VSM KFD+++AL++IEKYRVT  W+VPP++LAL K 
Sbjct: 239 FLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQ 298

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
             + ++DISSLK +GSGAAPLGKELME+C K++P   + QGYGMTETC  +S E P +G+
Sbjct: 299 GKLDRYDISSLKHIGSGAAPLGKELMEECAKSLPHVAVGQGYGMTETCGIVSKEIPKIGI 358

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------ELTVNCNL 383
           + +GS G LV+GVEAQI+SVDTLKPLPPNQLGEIWVRGPN+   +       +LT++   
Sbjct: 359 QHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMMKGYFNNPQATKLTIDKKG 418

Query: 384 F------SYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVVIP 424
           +       YF  ++    F           K FQVAPAELE LLVSHPEILDAVVIP
Sbjct: 419 WVHTGDVGYF--DEQGKLFVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIP 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/477 (57%), Positives = 333/477 (69%), Gaps = 57/477 (11%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRP LVLP DP                              SFS  
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDSGDSLSFSQL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KS V +++H F+ LG+ K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFQRLGVRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           Q+KDSNPK++I+V +L+DK+K  NLP VLLGSKD V        +SKI+SF+D++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFNLPVVLLGSKDSVQIPP--GSNSKILSFNDVMELSEP 178

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
           V+D P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSDYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+VI Y QLQ+GN +VSM KF++E+ L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKYRVTHLWVVPPVFLALSKQ 298

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+P +G 
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------EL 377
           R SGSAG L  GVEAQIVSV+T    PPNQ GEIWVRGPN+   +             + 
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGNSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKG 418

Query: 378 TVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVVIP 424
            V+     YF  N+  + +           K FQVAPAELEGLLVSHPEILDAVVIP
Sbjct: 419 WVHTGDLGYF--NEDGNLYVVDRLKELIKYKGFQVAPAELEGLLVSHPEILDAVVIP 473

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/477 (56%), Positives = 333/477 (69%), Gaps = 58/477 (12%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRP LVLP DP                              SFS  
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNTSSYPSKPALVDSDSGDTLSFSQL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KS V +++H F  LGI + DVVLIFAPNS  FP+CFL V AIG + +TANP+YT SE+SK
Sbjct: 61  KSAVSRLAHGFLRLGIRQNDVVLIFAPNSYQFPLCFLAVSAIGGVFTTANPLYTTSEISK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGS + V   G    +SKI+SF++++ELS  
Sbjct: 121 QIKDSNPKIIISVEQLFDKIKGFDLPIVLLGSGESVQVPG---SNSKILSFNNVMELSEP 177

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
           V+D+P V +KQ+D AALLYSSGTTG+SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 178 VSDLPTVQIKQSDTAALLYSSGTTGISKGVELTHGNFIAASLMVTMDQDLMGEYHAVFLC 237

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+VI Y QLQ+GN V+SM KF++E  L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 238 FLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKYRVTQLWVVPPVFLALSKQ 297

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           S+V+K+D+SSLK +GSGAAPLGK+LME+C +NI    + QGYGMTETC  +S+E+P +G 
Sbjct: 298 SIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQGYGMTETCGIVSVEDPRLGK 357

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------EL 377
           R SGSAG L  GVEAQIVSV++ K  PPNQLGEIWVRGPN+   +             + 
Sbjct: 358 RNSGSAGMLAPGVEAQIVSVESGKSQPPNQLGEIWVRGPNMMKGYLNNPQATKETIDRKG 417

Query: 378 TVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVVIP 424
            V+     YF  N+  + F           K FQVAPAELEGLLVSHPEILDAVVIP
Sbjct: 418 WVHTGDLGYF--NEDGNLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIP 472

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/477 (56%), Positives = 332/477 (69%), Gaps = 57/477 (11%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGIYRSLRP LVLP DP                              +FS  
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+P +G 
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------EL 377
           R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+   +             + 
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKS 418

Query: 378 TVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVVIP 424
            V+     YF  N+  + +           K FQVAPAELEGLLVSHP+ILDAVVIP
Sbjct: 419 WVHTGDLGYF--NEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIP 473

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/477 (59%), Positives = 332/477 (69%), Gaps = 58/477 (12%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           MEKSGYGRDGI+RSLRPPLV P DP                              S+S  
Sbjct: 1   MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNLLSYPNRLAIVDAESSNSVSYSQL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           K++ I+VS+    LGI K DVVLIFAPNS+ F ICF+GVIAIGAI +T NPVYTVSEL+K
Sbjct: 61  KALAIRVSNGLIQLGIEKNDVVLIFAPNSVQFTICFIGVIAIGAIVTTCNPVYTVSELTK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG- 149
           QV+D+ PKLVI+V ELWDKVK+LN+P VLL   D+   S +   S KI+ F+DL+ ++G 
Sbjct: 121 QVRDAKPKLVISVAELWDKVKNLNIPTVLL---DQQIPSAI--HSPKILCFNDLVNMAGD 175

Query: 150 -SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 208
            S ++ P V VKQ+D AALLYSSGTTG SKGVILTH NFIA+SLMI+  Q   GE   V 
Sbjct: 176 KSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHGNFIASSLMITMDQTFNGEEHGVF 235

Query: 209 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 268
           L  LPMFHVFGL+ I Y QLQKGN VVSM KF++E AL A+EKY+VT  WVVPP++LALA
Sbjct: 236 LNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALA 295

Query: 269 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV 328
           K SLV+K+++SS+K VGSGAAPLG+ELME+C  NIP A + QGYGMTETC  ++LENP V
Sbjct: 296 KQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQGYGMTETCGVVALENPAV 355

Query: 329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELT------ 378
           G R SGSAGTL +GVEA+IVSVDTLKPLPPNQ GEI VRGPN+   +    E T      
Sbjct: 356 GKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMLGYFNNPEATKQTIDK 415

Query: 379 ---VNCNLFSYFRSN------DHNDFFCKL--FQVAPAELEGLLVSHPEILDAVVIP 424
              V+     YF  N      D      K   FQVAPAELE LLVSHPEILDAVVIP
Sbjct: 416 HGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIP 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539342|ref|XP_003538157.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/482 (56%), Positives = 334/482 (69%), Gaps = 63/482 (13%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSM------------------------------F 30
           M+K+GYG DGIYRSLRP LVLP+DP+ S+                               
Sbjct: 1   MQKAGYGGDGIYRSLRPCLVLPNDPNLSLVSFLFQSVSSFPSKIALVDSHSSQTLTLAHL 60

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
           KS V K++H F  LGI K DVVL+ APNSIH+PICFL   AIGA+ STANP+YTV+E+SK
Sbjct: 61  KSQVAKLAHGFLKLGINKNDVVLLLAPNSIHYPICFLAATAIGAVVSTANPIYTVNEISK 120

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS-----RSSKIVSFHDLI 145
           QV DSNPKL+ITVPELWDKVK+LNLPAV++   D  ++ GL+S       S+I S   ++
Sbjct: 121 QVDDSNPKLLITVPELWDKVKNLNLPAVII---DTETAQGLVSFEAGNEVSRITSLDAVM 177

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           E++G  T++P+  VKQ D AALLYSSGTTG+SKGV+LTH+NFIAAS+MI    +L GE D
Sbjct: 178 EMAGPATELPESGVKQGDTAALLYSSGTTGLSKGVVLTHRNFIAASVMIGMDDDLAGEQD 237

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 265
            V LCVLPMFHVFGL+V+ Y  L++G+ VV M +F++E  L+AIEK RVT  WVVPPI+L
Sbjct: 238 DVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQRVTKLWVVPPILL 297

Query: 266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 325
            LAK S+V  +D+SSL+ +GSGAAPLGK+LME+C +  P   I QGYGMTETC  +S+EN
Sbjct: 298 GLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQGYGMTETCGIVSVEN 357

Query: 326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------ELT 378
           P VGVR +GS GTLV+GVEAQIVSVDT KPLPP QLGEIWVRGPN+   +        LT
Sbjct: 358 PRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGYHNNPEATRLT 417

Query: 379 ------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVV 422
                 V+     YF  ++    +           K FQVAPAELEGLLVSHPEIL+AVV
Sbjct: 418 IDKKGWVHTGDLGYF--DEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVV 475

Query: 423 IP 424
           +P
Sbjct: 476 VP 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.811	0.632	0.612	9.2e-135
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.780	0.585	0.389	1.1e-62
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.816	0.616	0.382	2.3e-62
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.790	0.613	0.357	2.3e-62
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.752	0.567	0.363	2.9e-62
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.775	0.591	0.385	6.1e-62
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.785	0.593	0.384	9.9e-62
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.799	0.616	0.365	3.8e-60
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.797	0.614	0.364	7.8e-60
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.783	0.586	0.347	9.6e-60

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 1102 (393.0 bits), Expect = 9.2e-135, Sum P(3) = 9.2e-135
 Identities = 212/346 (61%), Positives = 266/346 (76%)

Query:    26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
             +FS  KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV
Sbjct:    56 TFSQLKSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTV 115

Query:    86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
             +E+SKQ+KDSNPK++I+V +L+DK+K  +LP VLLGSKD                F +++
Sbjct:   116 NEVSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILS--FDNVM 173

Query:   146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
             ELS  V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE  
Sbjct:   174 ELSEPVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYH 233

Query:   206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 265
              V LC LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ L
Sbjct:   234 GVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFL 293

Query:   266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 325
             AL+K S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+
Sbjct:   294 ALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVED 353

Query:   326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
             P +G R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+
Sbjct:   354 PRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNM 399

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 134/344 (38%), Positives = 193/344 (56%)

Query:    34 VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
             V +V+     LG+ K +VV+I +PNSI FPI  L V+++GAI +TANP+ T  E+SKQ+ 
Sbjct:    84 VERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQIG 143

Query:    94 DSNPKLVITVPELWDKV---KDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 150
             DS P L  T  +L  K+    + NLP VL+                       +IE   S
Sbjct:   144 DSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVGR-LETMIETEPS 202

Query:   151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
              + +    V Q D AALLYSSGTTG SKGV+L+H+N IA   ++ A++   G L+   +C
Sbjct:   203 ESRVKQ-RVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA---LVQAYRARFG-LEQRTIC 257

Query:   211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK- 269
              +PM H+FG        +  G  +V + KFD+   L A+E +R +   +VPPI++A+   
Sbjct:   258 TIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMVNG 317

Query:   270 -NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA-PISLENPL 327
              N +  K+D+SSL  V +G APL +E+ E   +N P   I QGYG+TE+ A   S+ N  
Sbjct:   318 ANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTESTAIAASMFNK- 376

Query:   328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                +R G++G L   VE +IV  DT + L  NQ GE+W+R P V
Sbjct:   377 EETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTV 420

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
 Identities = 140/366 (38%), Positives = 213/366 (58%)

Query:    16 RPPLVLPSD-PSFSMFKSIVI--KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 72
             +P L++ S   S++  ++ +I  +V+     LGI K DV++I   NS  F   F+G   I
Sbjct:    64 KPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMI 123

Query:    73 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             GA+++TANP YT  EL KQ+K S  KL+IT  +  DK+K+L     L+ + +        
Sbjct:   124 GAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKNLGENLTLITTDEPTPENCLP 183

Query:   133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--A 190
                     F  LI    +      V +   DAAAL +SSGTTG+ KGV+LTHK+ I   A
Sbjct:   184 --------FSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKGVVLTHKSLITSVA 235

Query:   191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIE 250
               +   +  L  + + V+LCVLP+FH++ L+ +L + L+ G  V+ M KF+I   L  I+
Sbjct:   236 QQVDGDNPNLYLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQ 295

Query:   251 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 310
             ++RVT+  +VPP+++ALAKN  V  +D+SS++ V SGAAPLGKEL +  ++ +P A + Q
Sbjct:   296 RHRVTIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ 355

Query:   311 GYGMTETCAPISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 365
             GYGMTE    +S+     + P+    +SGS GT+V   E ++V ++T   L  NQ GEI 
Sbjct:   356 GYGMTEAGPVLSMSLGFAKEPIP--TKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEIC 413

Query:   366 VRGPNV 371
             +RG  +
Sbjct:   414 IRGQQI 419

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 2.3e-62, Sum P(3) = 2.3e-62
 Identities = 126/352 (35%), Positives = 194/352 (55%)

Query:    26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
             +F+     V  V+     +GI K  VVL+ +PNSI FP+  L V+++GAI +T NP+ T 
Sbjct:    59 TFTELWRAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTS 118

Query:    86 SELSKQVKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDXXXXXXXXXXXXXXXXFHD 143
             +E++KQ+KDSNP L  T  +L  K+      LP VL+  +                   +
Sbjct:   119 NEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLV-------E 171

Query:   144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
             +++   S   + +  V Q D A LLYSSGTTG+SKGVI +H+N IA   M+       G 
Sbjct:   172 MMKKEPSGNRVKE-RVDQDDTATLLYSSGTTGMSKGVISSHRNLIA---MVQTIVNRFGS 227

Query:   204 LD--HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 261
              D     +C +PMFH++GL+      L  G+ ++ + KF++   + AI KY+ T   +VP
Sbjct:   228 DDGEQRFICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVP 287

Query:   262 PIILALAKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 319
             PI++A+   +  +  K+D+SS+  V  G APL KE+ E   +  P   I QGYG+TE+  
Sbjct:   288 PILVAMVNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTG 347

Query:   320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
               +  + +   RR G+AG L A +E +IV   T + L P Q GE+W++GP++
Sbjct:   348 IGASTDTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSI 399

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
 Identities = 125/344 (36%), Positives = 198/344 (57%)

Query:    31 KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
             +S+ + +   F  L    ++V  I +P+S+  P+ +L +++IG + S ANP+ + SE+S 
Sbjct:    88 RSLAVSLRERFPSLA--SRNVAFILSPSSLDIPVLYLALMSIGVVVSPANPIGSESEVSH 145

Query:    91 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 150
             QV+ S P +     +   K++  +LP   LG+                  F   +  S S
Sbjct:   146 QVEVSEPVIAFATSQTVKKLQSSSLP---LGT-----------VLMDSTEFLSWLNRSDS 191

Query:   151 VTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---LDH 206
              +  P  V V Q+D AA+L+SSGTTG  KGV+LTH+N IA++ +  +HQ  + +    D 
Sbjct:   192 SSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAV--SHQRTLQDPVNYDR 249

Query:   207 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILA 266
             V L  LP+FHVFG  +++   +  G  +V +G+F++E   +A+EKY+VT   V PP+I+A
Sbjct:   250 VGLFSLPLFHVFGFMMMIR-AISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLIVA 308

Query:   267 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI-SLEN 325
             L K+ L +K+D+ SL+ +G G APLGK++ E  ++  P   I QGYG+TE+  P  S   
Sbjct:   309 LVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAASTFG 368

Query:   326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 369
             P   V+  GS G +   +EA+IV   T + LPP + GE+W+RGP
Sbjct:   369 PEEMVKY-GSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGP 411

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 132/342 (38%), Positives = 194/342 (56%)

Query:    36 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
             K++    +LG+ + DVV+I  PNS    + FL    IGAI ++ANP +T +E+SKQ K S
Sbjct:    75 KLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKAS 134

Query:    96 NPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTD-I 154
               KL++T     DK+K+L    VL+ + D                F +L +      D I
Sbjct:   135 AAKLIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLR------FSELTQSEEPRVDSI 188

Query:   155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVL 212
             P+  +   D  AL +SSGTTG+ KGV+LTHK  +   A  +   +  L    D V+LCVL
Sbjct:   189 PE-KISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVL 247

Query:   213 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
             PMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  VVPPI+LA+AK+  
Sbjct:   248 PMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPE 307

Query:   273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR- 331
               K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE    +++         
Sbjct:   308 TEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 367

Query:   332 --RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
               +SG+ GT+V   E +I+  DT   LP N+ GEI +RG  +
Sbjct:   368 PVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQI 409

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
 Identities = 132/343 (38%), Positives = 195/343 (56%)

Query:    36 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
             +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E++KQ K S
Sbjct:    77 QIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKAS 136

Query:    96 NPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDI 154
             N KL+IT     DK+K L N   V++   D                F +L + +   +++
Sbjct:   137 NTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQSTTEASEV 193

Query:   155 PD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCV 211
              D V +   D  AL YSSGTTG+ KGV+LTHK  +   A  +   +  L    D V+LCV
Sbjct:   194 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCV 253

Query:   212 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 271
             LPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+LA+AK+S
Sbjct:   254 LPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS 313

Query:   272 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR 331
                K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE    +++        
Sbjct:   314 ETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEP 373

Query:   332 ---RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +
Sbjct:   374 FPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 416

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 128/350 (36%), Positives = 196/350 (56%)

Query:    26 SFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 84
             SFS     V +V+    H +GI + DVVL+ +PN+I  PI  L V+++GA+ +TANP+ T
Sbjct:    66 SFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNT 125

Query:    85 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 144
              SE+ +Q+ DSNPKL  T PEL  K+    +  VL   +D                  ++
Sbjct:   126 ASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLT---EM 182

Query:   145 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 204
             ++   S   + +  V + D A LLYSSGTTG SKGV  +H N IA      A  E   + 
Sbjct:   183 MKKEPSGQAVRN-QVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIA--EPFEQP 239

Query:   205 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
                 +C +P+FH FGL   +   L  G  VV + +FD+   + A+EKYR T   +VPP++
Sbjct:   240 QQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVL 299

Query:   265 LALAKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC-API 321
             + +   +  +++K+D+S L+ V  G APL KE+ +   K  P   ++QGY +TE+  A  
Sbjct:   300 VTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGA 359

Query:   322 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
             S+E+ +   RR G+ G L  GVEA+IV  +T + +  NQ GE+W++GP++
Sbjct:   360 SIES-VEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSI 408

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
 Identities = 128/351 (36%), Positives = 198/351 (56%)

Query:    26 SFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 84
             +FS     V +V+    H +GI + DVVLI +PNSI  P+  L V+++GA+ +TAN + T
Sbjct:    65 TFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNT 124

Query:    85 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 144
               E+SKQ+ DSNP LV T  +L  K+  + +  VL    D                  ++
Sbjct:   125 SGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLT---DDEVYQELTSAIRVVGILSEM 180

Query:   145 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGE 203
             ++   S   + D  V Q D A +LYSSGTTG SKGVI +H+N  A  +  IS + +    
Sbjct:   181 VKKEPSGQRVRD-RVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKR--- 236

Query:   204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 263
              D + +C +PMFH +GL       +  G+ VV + +F +   + A+EK+R T   + PP+
Sbjct:   237 -DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPV 295

Query:   264 ILALAKNS-LVR-KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 321
             ++A+  ++ L++ K+D+SSLK V  G APL KE+ E   +  P   I QGY +TE+    
Sbjct:   296 LVAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGG 355

Query:   322 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
             +  N     RR G+AGTL + VEA+IV  +T + +  NQ GE+W++GP+++
Sbjct:   356 AFTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSIS 406

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 9.6e-60, Sum P(3) = 9.6e-60
 Identities = 121/348 (34%), Positives = 194/348 (55%)

Query:    29 MFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 88
             M +S+   + H    LG+ + DVV +  PNS++FP+ FL +I++GAI +T NP  ++ E+
Sbjct:    81 MVQSMAAGIYHV---LGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEI 137

Query:    89 SKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELS 148
              KQV + +  L  T  E  +K+  L +  + +                    F+ +++ S
Sbjct:   138 KKQVSECSVGLAFTSTENVEKLSSLGVSVISVSES-----YDFDSIRIENPKFYSIMKES 192

Query:   149 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMI--SAHQ-ELVGEL 204
                  +P   +KQ D AA++YSSGTTG SKGV+LTH+N IA+  L +   A Q E  G  
Sbjct:   193 FGF--VPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGS- 249

Query:   205 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
              +V L  LP+ H++GLS+ +   L  G+ +V M +FD    +  IE++++T + VVPP++
Sbjct:   250 SNVYLAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPML 309

Query:   265 LALAKNSLVRKFDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
             +AL K +     ++  SLK V SGAAPL ++ +ED  + +P   + QGYGMTE+ A  + 
Sbjct:   310 MALTKKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTR 369

Query:   324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                   + R  S G L   ++A++V   +   LPP   GE+W++GP V
Sbjct:   370 GFNSEKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGV 417

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.5639	0.9905	0.7720	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ACLL12	4-coumarate-coa ligase (544 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PAL	RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)						•	•		0.966
	PAL5	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)						•	•		0.962
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)						•	•		0.947
	CCR	SubName- Full=Cinnamoyl CoA reductase; (339 aa)						•	•		0.947
	C4H3	SubName- Full=Trans-cinnamate 4-hydroxylase; (465 aa)						•	•		0.926
	C4H2	SubName- Full=Putative uncharacterized protein; (505 aa)						•	•		0.926
	C4H1	SubName- Full=Trans-cinnamate 4-hydroxylase; (505 aa)						•	•		0.903
	CAM1	RecName- Full=Caffeoyl-CoA O-methyltransferase 1; EC=2.1.1.104; AltName- Full=Trans-caffeoyl-Co [...] (248 aa)						•	•		0.903
	COMT1	SubName- Full=Caffeic acid 3-O-methyltransferase; (365 aa)						•	•		0.902
	gw1.8531.4.1	hypothetical protein (134 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-156
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-111
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-100
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	4e-86
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-83
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-83
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-82
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	6e-69
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-62
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	9e-62
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-61
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-61
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-58
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-57
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	5e-57
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-56
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	7e-56
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-52
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	4e-51
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	6e-49
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	5e-46
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	4e-43
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	6e-43
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-42
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	4e-41
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-40
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-39
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	9e-38
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-37
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-37
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	8e-37
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-36
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-36
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-35
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	7e-35
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	4e-34
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	4e-34
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-34
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	5e-33
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	5e-33
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	6e-32
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-31
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-31
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-31
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-30
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-30
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-30
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-30
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-30
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	6e-30
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	7e-30
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-30
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-28
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	8e-28
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-27
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-26
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-26
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-25
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-25
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-25
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-25
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-25
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-24
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-24
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	3e-24
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-24
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-23
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-23
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	1e-22
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	6e-22
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-21
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-21
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	7e-21
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	7e-21
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-20
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-20
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-20
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-20
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-19
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-19
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-18
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-18
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-18
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	4e-18
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	7e-18
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	3e-17
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	6e-17
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-16
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-16
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	7e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	8e-16
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-15
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	2e-15
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-15
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	4e-15
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-14
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-14
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-14
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-14
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-14
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	5e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	9e-14
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-13
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-13
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	6e-13
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-12
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-12
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-12
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	3e-12
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-12
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	6e-12
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-11
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-11
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-11
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-11
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-11
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-11
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	7e-11
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-10
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-10
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-10
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	1e-10
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-10
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	2e-10
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	4e-10
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	6e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-09
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	1e-09
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	3e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-09
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-09
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-09
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	6e-09
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	8e-09
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-08
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	7e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-07
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	6e-07
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	6e-07
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	6e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-06
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	1e-06
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-06
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-06
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	7e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	7e-06
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	7e-06
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	8e-06
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-05
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-05
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	3e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	3e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	5e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	1e-04
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-04
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-04
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	3e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	5e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	0.003

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  451 bits (1163), Expect = e-156
 Identities = 190/424 (44%), Positives = 250/424 (58%), Gaps = 41/424 (9%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++  + +V +++      G  K DVVL+ +PNS+ FP+ FL V++ GA+ +TANP+YT 
Sbjct: 34  TYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTP 93

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDL 144
           +E++KQVKDS  KL IT  EL +K+  L L P VLL S D  S+                
Sbjct: 94  AEIAKQVKDSGAKLAITTSELAEKLASLALEPVVLLDSADDGSA-------------AID 140

Query: 145 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 204
             L     + P V +KQ D AAL YSSGTTG SKGV+LTH+N IA    + A +    + 
Sbjct: 141 DLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDR 200

Query: 205 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
           + V LCVLPMFH++GL+VIL   L+ G  VV M +FD+E  L AIEKY+VT   VVPPI+
Sbjct: 201 EDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIV 260

Query: 265 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 324
           LAL K+ +V K+D+SSLK +GSGAAPLGKEL E  +   PG  + QGYGMTE+    ++ 
Sbjct: 261 LALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMC 320

Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV------------- 371
                  + GS G LV  VEA+IV  +T + LPPNQ GE+WVRGP V             
Sbjct: 321 PVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAE 380

Query: 372 TPVFELTVNCNLFSYFRSNDHNDFF-----------CKLFQVAPAELEGLLVSHPEILDA 420
           T   +  ++     YF   D + +             K FQVAPAELE LL+SHPEI DA
Sbjct: 381 TIDKDGWLHTGDLGYF---DEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADA 437

Query: 421 VVIP 424
            VIP
Sbjct: 438 AVIP 441

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  334 bits (860), Expect = e-111
 Identities = 169/435 (38%), Positives = 231/435 (53%), Gaps = 57/435 (13%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F+      ++++   R LG+ + DVV + +PNSI FP  FLG +A G I S ANP YT 
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV----SSSGLISRSSKIVSF 141
            EL+ Q+K S PKL+   P+  DKVK+    A  LG   ++    S+   + R   ++  
Sbjct: 72  DELAHQLKISKPKLIFCDPDELDKVKEA---AKELGPVVRIIVLDSAPDGVLRIEDLLEP 128

Query: 142 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMISAHQEL 200
               E     T + D    + D AALLYSSGTTG+ KGV+L+HKN IA  S +    +  
Sbjct: 129 RLGAEDEFRPTPLID---GKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGN 185

Query: 201 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV 260
               + VVL  LP +H +GL+  L   L  G  V+ M KFD E  L+ IEKY+VT  ++V
Sbjct: 186 PDSSNDVVLTFLPFYHAYGLTTTLA-SLLCGATVIIMPKFDSETFLKLIEKYKVTSLFLV 244

Query: 261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
           PPI +ALAK+ LV K+D+SSL+++ SGAAPL KEL E+ +K  P  TI QGYGMTET   
Sbjct: 245 PPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPA 304

Query: 321 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVN 380
            +L  P  G  + GS G LV  VEA+IV  D  K L PN+ GE+ V+GP +         
Sbjct: 305 TTLTPP--GDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMK------- 355

Query: 381 CNLFSYFR-------SNDHNDFF-------------------------CKLFQVAPAELE 408
                Y         + D + +                           K +QV PAELE
Sbjct: 356 ----GYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELE 411

Query: 409 GLLVSHPEILDAVVI 423
            +L+ HP++ DA VI
Sbjct: 412 AVLLEHPKVADAAVI 426

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  309 bits (793), Expect = e-100
 Identities = 164/425 (38%), Positives = 234/425 (55%), Gaps = 55/425 (12%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +V+     LGI + DVV++  PN   F + FLG    GA+ +TANP YT +E++KQ K S
Sbjct: 62  RVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKAS 121

Query: 96  NPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
             KL+IT     DK+K L     V + + D              + F +L +   +  ++
Sbjct: 122 GAKLIITQSCYVDKLKGLAEDDGVTVVTID--------DPPEGCLHFSELTQADEN--EL 171

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHV 207
           P+V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V
Sbjct: 172 PEVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPNLYFHSDDV 226

Query: 208 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 267
           +LCVLPMFH++ L+ +L   L+ G  ++ M KF+I   L  I++++VT+   VPPI+LA+
Sbjct: 227 ILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAI 286

Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL---- 323
           AK+ +V K+D+SS+++V SGAAPLGKEL +  +  +P A + QGYGMTE    +++    
Sbjct: 287 AKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAF 346

Query: 324 -ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELT 378
            + P     +SGS GT+V   E +IV  +T   LP NQ GEI +RGP +   +    E T
Sbjct: 347 AKEPF--PVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEAT 404

Query: 379 VNC-------------------NLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILD 419
            N                     LF   R  +   +  K FQVAPAELE LL+SHP I D
Sbjct: 405 ANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKY--KGFQVAPAELEALLISHPSIAD 462

Query: 420 AVVIP 424
           A V+P
Sbjct: 463 AAVVP 467

Length = 537

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  272 bits (698), Expect = 4e-86
 Identities = 158/481 (32%), Positives = 243/481 (50%), Gaps = 84/481 (17%)

Query: 10  GIYRSLRPPLVLPSDPSFSMFKSIVIKVSHS----------------------------- 40
           GIY S  PP+ LPSDP+      I    +H+                             
Sbjct: 23  GIYSSKHPPVPLPSDPNLDAVSFIFSHHNHNGDTALIDSSTGFSISYSELQPLVKSMAAG 82

Query: 41  -FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 99
            +  +G+ + DVVL+  PNS++FP+ FL V+++G I +T NP  ++ E+ K+V D +  L
Sbjct: 83  LYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGL 142

Query: 100 VITVPELWDKVKDLNLPAVLLGSKDKVSSSG-LISRSSKIVSFHDLIELSGSVTDIPDVS 158
             T PE  +K+  L +P +       V  +    S+  +   F++LI+       +P   
Sbjct: 143 AFTSPENVEKLSPLGVPVIG------VPENYDFDSKRIEFPKFYELIKEDFDF--VPKPV 194

Query: 159 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS---LMISAHQELVGELDHVVLCVLPMF 215
           +KQ D AA++YSSGTTG SKGV+LTH+N IA     +   A Q      D+V L  LPMF
Sbjct: 195 IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMF 254

Query: 216 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VR 274
           H++GLS+ +   L  G+ +V M +FD    ++ I++++VT + VVPPI++AL K +  V 
Sbjct: 255 HIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVC 314

Query: 275 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR--- 331
              + SLK V  GAAPL  + ++D  + +P     QGYGMTE+ A        VG R   
Sbjct: 315 GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA--------VGTRGFN 366

Query: 332 -----RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------ELTV 379
                +  S G L   ++A++V   T   LPP   GE+W++GP V   +       + T+
Sbjct: 367 TEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTI 426

Query: 380 NCNLFSYFRSN-----DHNDFFC-----------KLFQVAPAELEGLLVSHPEILDAVVI 423
           + +   + R+      D + +             K FQ+APA+LE +L+SHPEI+DA V 
Sbjct: 427 DKD--GWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVT 484

Query: 424 P 424
            
Sbjct: 485 A 485

Length = 560

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  261 bits (669), Expect = 1e-83
 Identities = 122/412 (29%), Positives = 200/412 (48%), Gaps = 35/412 (8%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +++ + R LG+   D V I  PNS  + +  L V+  GA     +P      L+  ++DS
Sbjct: 11  RLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAERLAYILEDS 70

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
             K++IT  EL  K+ ++ L  ++L +   V   G        +   D   L+G+  + P
Sbjct: 71  EAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEG------LDLLDDELLAGASAEPP 124

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
              V   D A ++Y+SGTTG  KGV+LTH+N +A +  ++    L       VL +LP+ 
Sbjct: 125 APPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP--GDRVLLLLPLH 182

Query: 216 HVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
               +  I    L  G  +V + KF  D    L  IEKY+VTV + VP ++  L K    
Sbjct: 183 FDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEE 241

Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 333
           +K+D+SSL+LV SG  PL  EL+   ++   G  +  GYG TET    +   P     + 
Sbjct: 242 KKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKP 301

Query: 334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELT---VNCNLFSY 386
           GS G  + GVE +++  +  +P+PP ++GE+ +RGP V   +    ELT      + +  
Sbjct: 302 GSIGRPLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGM 360

Query: 387 FRS-----NDHNDFFC---------KL--FQVAPAELEGLLVSHPEILDAVV 422
           +R+      D + +           K+   ++ P E+E +L+ HP + +A V
Sbjct: 361 YRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  263 bits (674), Expect = 2e-83
 Identities = 130/418 (31%), Positives = 201/418 (48%), Gaps = 60/418 (14%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++    +  + +   + LG+ K D V +  PN   FPI + G++  GA+    NP+YT 
Sbjct: 26  TYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTP 85

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            EL  Q+ DS  K++I                                     +SF D +
Sbjct: 86  RELEHQLNDSGAKVLIVA-----------------------------------ISFEDAL 110

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
                +    ++S    D A L Y+ GTTGV KG +LTH+N +A    I+A  + + E +
Sbjct: 111 ASGAPLPLPVELS--PDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGE 168

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 265
              L  LP+FH+FGL+V +   L+ G   V +  F     L+ I++YR T++  VP +  
Sbjct: 169 DRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYN 228

Query: 266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 325
           AL  +   +K+D SSL+L  SG APL  E+ E   +   GA + +GYG+TET +P++  N
Sbjct: 229 ALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERF-EEKTGAPLVEGYGLTET-SPVTTVN 286

Query: 326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNC 381
           PL G R+ GS G  + G E +IV  +    LPP ++GE+ VRGP V   +    E T   
Sbjct: 287 PLDGERKPGSIGLPLPGTEVKIVDDEG-NELPPGEVGELVVRGPQVMKGYWNRPEETAEV 345

Query: 382 NLFSYFRS-----NDHNDFF-----------CKLFQVAPAELEGLLVSHPEILDAVVI 423
               + R+      D + +F              F V P E+E +L SHP +L+A V+
Sbjct: 346 LTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVV 403

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  262 bits (671), Expect = 2e-82
 Identities = 138/423 (32%), Positives = 200/423 (47%), Gaps = 30/423 (7%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++        +++ + + LG+   D V I  PNS  F I FL  +  GA+A   NP  T 
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            EL+  + D+  K++IT  E    ++ +            V      +     ++   L 
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAV----AEALPVVLVVLLVGDADDRLPITLEALA 155

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
              G   D     V   D A LLY+SGTTG+ KGV+LTH+N +A +  I+A        D
Sbjct: 156 A-EGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPD 214

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPI 263
            VVL  LP+FH+FGL V L   L  G  +V  S   FD E  L  IEKY+VTV   VP  
Sbjct: 215 DVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTF 274

Query: 264 ILALAKNSLVRKFDISS-LKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS 322
           +  L  N      D+SS L+LV SG APL  EL+E  ++      I +GYG+TET   ++
Sbjct: 275 LRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVT 334

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELT 378
           +  P   + + GS G  + GVE +IV  D  + L P ++GEIWVRGPNV   +    E T
Sbjct: 335 INPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVL-PGEVGEIWVRGPNVMKGYWNRPEAT 393

Query: 379 VNC-NLFSYFRSND----HNDFFCKL------------FQVAPAELEGLLVSHPEILDAV 421
               +   + R+ D      D +  +              + P E+E +L  HP + +A 
Sbjct: 394 AEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAA 453

Query: 422 VIP 424
           V+ 
Sbjct: 454 VVG 456

Length = 534

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  227 bits (580), Expect = 6e-69
 Identities = 149/482 (30%), Positives = 235/482 (48%), Gaps = 91/482 (18%)

Query: 11  IYRSLRPPLVLPSD---PSFSM----------------------FKSIV---IKVSHSFR 42
           I+RS  P + +P     P F +                      +  +V    + + + R
Sbjct: 14  IFRSRYPSVPVPDKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALR 73

Query: 43  HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 102
            LG+ K  VV++  PN   + I  LG++A G + S ANP    SE+ KQ + +  KL++T
Sbjct: 74  SLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVT 133

Query: 103 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS-VKQ 161
               + KVK L LP ++LG            +    V++ +L+E +    D  D   + Q
Sbjct: 134 NDTNYGKVKGLGLPVIVLGE----------EKIEGAVNWKELLEAADRAGDTSDNEEILQ 183

Query: 162 TDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFG 219
           TD  AL +SSGTTG+SKGV+LTH+N +A   S + S   E++G++  V L ++P FH++G
Sbjct: 184 TDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQV--VTLGLIPFFHIYG 241

Query: 220 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS 279
           ++ I    L+    VV M +F++   L A+    V+   +VPPIIL L KN +V +FD+S
Sbjct: 242 ITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLS 301

Query: 280 SLKL--VGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-TCAPISLENPLV--GVRRSG 334
            LKL  + + AAPL  EL+   +   PG  + + YG+TE +C  ++  +P    G+ +  
Sbjct: 302 KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKN 361

Query: 335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS----- 389
           S G ++  +E + +  DT + LP N  GE+ VR             C +  Y+ +     
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRS-----------QCVMQGYYNNKEETD 410

Query: 390 -----------------NDHNDFFC----------KLFQVAPAELEGLLVSHPEILDAVV 422
                            +D  D F           K FQVAPAELE +L++HP + DA V
Sbjct: 411 RTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 470

Query: 423 IP 424
           +P
Sbjct: 471 VP 472

Length = 546

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  209 bits (535), Expect = 2e-62
 Identities = 99/428 (23%), Positives = 174/428 (40%), Gaps = 47/428 (10%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++   +  V +++++ + LG  K D V I+ PNS    I  L    IGAI +  +P  + 
Sbjct: 42  TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSA 101

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
             ++ ++ D  PK++I     +   K++ L        D V SS ++      + + + +
Sbjct: 102 EAVADRIADLGPKVLIADDGTFRNGKEIALLEDA----DAVLSSVVVVP-RLGLWYDEAV 156

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           E +          +   D   LLY+SGTTG  KG++ +H  ++    + +     +   D
Sbjct: 157 EKAS--EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGD 214

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---KFDIEMALRAIEKYRVTVWWVVPP 262
                      ++GL   ++  L  G   V       +  E    A+EKY+VT++   P 
Sbjct: 215 -RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPT 273

Query: 263 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS 322
            +  L K  L   +D+SSL+++GS   PL  E  E     + G  I   YG TET     
Sbjct: 274 FLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFI 332

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN------------ 370
              P V   ++GS+G  + G   + V  D   P+PP   GE+ VR P             
Sbjct: 333 AGRPPV---KNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELVVRLPWPGMALTYWNDPE 387

Query: 371 -VTPVFELTVNCNLFSYFRSNDHNDFFCKLFQ-------------VAPAELEGLLVSHPE 416
                +          +   ++   F+                  + P E+E +L++HP 
Sbjct: 388 RYKEAYFGRWYR-TGDWAERDEDGYFW---LHGRSDDVIKVSGKRIGPLEIESVLLAHPA 443

Query: 417 ILDAVVIP 424
           + +A V+ 
Sbjct: 444 VAEAAVVG 451

Length = 528

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  202 bits (517), Expect = 9e-62
 Identities = 105/283 (37%), Positives = 152/283 (53%), Gaps = 27/283 (9%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
           D A +LY+SGTTG  KGV+L+H+N +A +  ++    L  E D V+L VLP+FHV G   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGD-VLLSVLPLFHVVGGGS 58

Query: 223 ILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 281
            L   L  G  VV    F      L  IE+YRVTV + VP +  ALAK +  R +D+SSL
Sbjct: 59  GLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSL 118

Query: 282 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA 341
           +L+ SG  PL  EL+E  ++  PGA I +GYG+TET   ++  NP   +++ G+ G  V 
Sbjct: 119 RLLISGGEPLSPELLERFEE-RPGAPILEGYGLTETS-VVTSTNPDSELKKPGTVGRPVP 176

Query: 342 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNCNLF-SYFRSND----- 391
           GVE ++V  +  KPLPP ++GE+ VRGP V   +      T        ++R+ D     
Sbjct: 177 GVEVRVVDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLD 235

Query: 392 -----------HNDFFCKLFQVAPAELEGLLVSHPEILDAVVI 423
                       +        V PAE+E +L+ HP + +A V+
Sbjct: 236 EEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVV 278

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  207 bits (529), Expect = 1e-61
 Identities = 119/419 (28%), Positives = 191/419 (45%), Gaps = 41/419 (9%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V + + +   LGI K D V I+APNS H+ I  LG +  GA+    N  YT  E +  + 
Sbjct: 40  VRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILA 99

Query: 94  DSNPKLVITVPELW--DKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 151
             + K +  +      D      LPA  L       +      + K+ +F D +  +G  
Sbjct: 100 RGDAKALFVLGLFLGVDYSATTRLPA--LEHVVICETEEDDPHTEKMKTFTDFLA-AGDP 156

Query: 152 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHV---- 207
            +     V   D A +L++SGTTG  KG +LTH+       ++S   +    L       
Sbjct: 157 AERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQ------LLSNAADWAEYLGLTEGDR 209

Query: 208 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 267
            L   P FHVFG    +   L +G  ++ +  FD +   R IE  R+TV    P +  +L
Sbjct: 210 YLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSL 269

Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL 327
            ++      D+SSL+L  +GAA +   L+E  +  +    +  GYG++E  + ++  N L
Sbjct: 270 LQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSE-ASGVTTFNRL 328

Query: 328 VGVRR--SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV-TPVFEL------T 378
              R+  +G+ GT +AGVE +IV+    + +P  ++GE+ VRGPNV    ++        
Sbjct: 329 DDDRKTVAGTIGTAIAGVENKIVNELG-EEVPVGEVGELLVRGPNVMKGYYDDPEATAAA 387

Query: 379 VNCN--LFS----------YFRSNDH-NDFF-CKLFQVAPAELEGLLVSHPEILDAVVI 423
           ++ +  L +          Y    D   D F    F V PAE+E +L  HP + +A VI
Sbjct: 388 IDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVI 446

Length = 513

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  206 bits (527), Expect = 2e-61
 Identities = 112/359 (31%), Positives = 171/359 (47%), Gaps = 25/359 (6%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++     V +++++ R LG+ K D V +F  NS  +   +  V  IGA+    N     
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSGLISRSSKIV 139
            E++  + D+  ++V+   E    +  +   LP V    + G       +  +       
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGE----- 147

Query: 140 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
            + +L  L+ +        + + DAAA+LY+SGTTG  KGV+L+H+N    SL + A   
Sbjct: 148 -YEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL- 203

Query: 200 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 259
            +   D V L ++PMFHV    +  Y  L  G   V   +FD E  L  IE  RVT ++ 
Sbjct: 204 KLSRDD-VYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFA 261

Query: 260 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 319
           VP I   L K       D SSL+LV  G A L   L+ + ++   G  + QGYGMTET  
Sbjct: 262 VPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQGYGMTETSP 320

Query: 320 PISLENP----LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVT 372
            +S+  P         +  SAG  + GVEA+IV  D    LPP+  ++GEI VRGP + 
Sbjct: 321 VVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLM 378

Length = 521

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  194 bits (496), Expect = 1e-58
 Identities = 100/281 (35%), Positives = 142/281 (50%), Gaps = 25/281 (8%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
           D A +LY+SGTTG  KGV+LTH+N +A    ++A   +      V L   P++H  G   
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLAN--AVNALAGVDLSPGDVYLLAAPLYHAAGGLF 59

Query: 223 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 282
           +L   L  G  VV M KFD E  L  IE++RVT  ++VP +   L +     ++D+SSL+
Sbjct: 60  LLP-ALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLR 118

Query: 283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG 342
           L+  GAAP+  EL         G    QGYGMTET    +L +P   +R+ GS G  V G
Sbjct: 119 LIIYGAAPMPAELKR-AMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPG 177

Query: 343 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNCNLFSYFRSND----HND 394
           VE +IV  D  + LPP ++GEI VRGP V   +    E T       +  + D      D
Sbjct: 178 VEVRIVDEDG-RELPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDED 236

Query: 395 FFCKL------------FQVAPAELEGLLVSHPEILDAVVI 423
            +  +              + PAE+E +L++HP + D  VI
Sbjct: 237 GYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVI 277

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  193 bits (493), Expect = 3e-57
 Identities = 114/406 (28%), Positives = 176/406 (43%), Gaps = 88/406 (21%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
            G+ K D V ++  NS  F I +  ++  GA+    NP+   +EL   + DS  +++I  
Sbjct: 21  KGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILNDSGARVLIVG 80

Query: 104 PELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTD 163
            EL D        AV                                   IP        
Sbjct: 81  SELDD-------VAV-----------------------------------IP-------- 90

Query: 164 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLS 221
                Y+SGTTG+ KG + TH+  +A     +A       L    V+L  LP+FHV G+ 
Sbjct: 91  -----YTSGTTGLPKGCMHTHRTVLAT----AAASAAWSGLTPDSVLLAFLPLFHVAGMQ 141

Query: 222 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 281
             +   +  G  +V + ++D E A RAIE+YRVT W  +  +++ L  +     +D+SSL
Sbjct: 142 GSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLSSL 201

Query: 282 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA 341
           K+VG G A L   + E  +  + G    +GYG+TET        P     +    G  V 
Sbjct: 202 KVVGGGGAALPPAVAERLKA-LTGLLYEEGYGLTETHTCTHFNPPDRP--KPQCLGIPVF 258

Query: 342 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------ELTVNCNLFSYFRSND-- 391
           G +A+++  +T + LPP + GEI VRGP V   +        E  +  +   +FR+ D  
Sbjct: 259 GTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLG 318

Query: 392 HND---FFCKL-----------FQVAPAELEGLLVSHPEILDAVVI 423
           + D   +F  L           ++V PAE+E LL  HP +L+  VI
Sbjct: 319 YIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVI 364

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  190 bits (486), Expect = 5e-57
 Identities = 82/211 (38%), Positives = 114/211 (54%), Gaps = 4/211 (1%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
           D A + Y+SGTTG  KG +LTH+N +     I+    L        L  +P+FHVFGL +
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL--TEGDRTLVPVPLFHVFGLVL 60

Query: 223 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 282
            +   L  G  +V M KFD   ALR IE+ R+T    VP + +AL ++    KFD+SSL+
Sbjct: 61  GVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLR 120

Query: 283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV-RRSGSAGTLVA 341
              SG AP+  EL+   ++  P A I  GYGMTET    +  +       R G+ G  + 
Sbjct: 121 TGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLP 180

Query: 342 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
           GVE +IV  D    +PP ++GEI VRG +V 
Sbjct: 181 GVEVKIVDPDG-GEVPPGEVGEICVRGYSVM 210

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  194 bits (495), Expect = 2e-56
 Identities = 132/433 (30%), Positives = 200/433 (46%), Gaps = 67/433 (15%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 101
           +  G+ K D VL++  NS  F I +  ++   A+    NP+    EL+  V DS  ++ I
Sbjct: 54  QECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAI 113

Query: 102 TVPELWDKVKDLN----LPAVLLGS-KDKVSSSGLISRSSKIVSFHDLIELS-GSVTDI- 154
              EL  KV        L  V++    D + +   I+  + + +   L  L+ G V    
Sbjct: 114 VGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWK 173

Query: 155 ---------PDVSVKQTDAAALLYSSGTTGVSKGVILTHK----NFIAASLMISAHQELV 201
                    P  +    D A L Y+SGTTGV KG + TH+    N + + L  ++  E  
Sbjct: 174 EALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPE-- 231

Query: 202 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 261
                VVL VLP+FHV G+   +   +  G  VV M ++D E A R IE+YRVT W  +P
Sbjct: 232 ----SVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIP 287

Query: 262 PIILALAKNSLVRKFDISSLKLVGSGAAPL----GKELMEDCQKNIPGATIFQGYGMTET 317
            +++    +  + + D+SSL+ +G G A +     + L E       G    +GYG+TET
Sbjct: 288 TMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELT-----GLDYVEGYGLTET 342

Query: 318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV------ 371
            A  +  NP     +    G    GV+A+++  +TL+ LPP ++GEI V GP V      
Sbjct: 343 MAQ-THSNPP-DRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWN 400

Query: 372 -----TPVFELTVNCNLFSYFRSND--HND----FFC--KL--------FQVAPAELEGL 410
                   F + ++   F  FR+ D    D    FF   +L        F+V PAE+E L
Sbjct: 401 RPEATAEAF-IEIDGKRF--FRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENL 457

Query: 411 LVSHPEILDAVVI 423
           L  HP I +A VI
Sbjct: 458 LYKHPAIQEACVI 470

Length = 546

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  193 bits (491), Expect = 7e-56
 Identities = 138/446 (30%), Positives = 224/446 (50%), Gaps = 49/446 (10%)

Query: 21  LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 80
           L  D +FS+F   V + ++  + LG+ K D V I  PN     I + G +  G I    N
Sbjct: 46  LGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105

Query: 81  PVYTVSELSKQVKDSNPKLVITVPELWDKVKD------------------LNLPAVLLGS 122
           P+YT  EL  Q+ DS  K+++ +  ++ +V +                  L  P  LL  
Sbjct: 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYP 165

Query: 123 KDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVK-----QTDAAALLYSSGTTGVS 177
             +   S L+ +    VS  + I L  SV    +  V+     + D A L Y+ GTTG  
Sbjct: 166 FVQKKQSNLVVK----VSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFP 221

Query: 178 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 237
           KGV+LTHKN ++ +LM         E + VVL VLP FHV+G++ ++   + +G  +V +
Sbjct: 222 KGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLI 281

Query: 238 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 297
            KFD++M   AI+K++VT++   P I +AL  + L++++DISS++   SG+APL  E+ E
Sbjct: 282 PKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQE 341

Query: 298 DCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 357
             +  + G  + +GYG+TE+ +P++  N L   R  GS G      EA I+S++T + LP
Sbjct: 342 KFET-VTGGKLVEGYGLTES-SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALP 399

Query: 358 PNQLGEIWVRGPNVTPVF----ELT----------------VNCNLFSYFRSNDHNDFFC 397
           P ++GEI V+GP +   +    E T                ++ + F Y +    +    
Sbjct: 400 PGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVA 459

Query: 398 KLFQVAPAELEGLLVSHPEILDAVVI 423
             F V P E+E +L  H ++ + V I
Sbjct: 460 SGFNVYPREVEEVLYEHEKVQEVVTI 485

Length = 563

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  184 bits (469), Expect = 2e-52
 Identities = 128/441 (29%), Positives = 198/441 (44%), Gaps = 59/441 (13%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V + +   R LG+   D V I  PN     + F  V+ +GA+    NP+YT  EL    +
Sbjct: 67  VRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE 126

Query: 94  DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS-----------------RSS 136
           D   ++ I    +WDKV             + + S  +I+                 R +
Sbjct: 127 DHGARVAI----VWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKA 182

Query: 137 K---------IVSFHDLIE----LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILT 183
           +          V +  L++      GS    P  +    D A +LY+SGTTG  KG  LT
Sbjct: 183 RAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPT--PDDVALILYTSGTTGKPKGAQLT 240

Query: 184 HKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIE 243
           H+N  A +    A    +G+    VL  LPMFH +GL++ L   +  G  +V +   DI+
Sbjct: 241 HRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 244 MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 303
           + L A++K+  T    VPP+   +A+ +  R  D+S ++   SGA  L    +E  +K +
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEK-L 359

Query: 304 PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLG 362
            G  + +GYG+TET +PI + NP+   RR G  G      E +IV  +   + +P  + G
Sbjct: 360 TGGLLVEGYGLTET-SPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEG 418

Query: 363 EIWVRGPNVTPVF----ELTVNCNLFSYFRSND----HNDFFCKL------------FQV 402
           E+ VRGP V   +    E T    L  +FR+ D      D F ++            F V
Sbjct: 419 ELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNV 478

Query: 403 APAELEGLLVSHPEILDAVVI 423
            PAE+E +L  HP + DA V+
Sbjct: 479 YPAEVEEVLREHPGVEDAAVV 499

Length = 573

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  180 bits (457), Expect = 4e-51
 Identities = 133/458 (29%), Positives = 216/458 (47%), Gaps = 69/458 (15%)

Query: 16  RPPLVLPSDP-SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 74
           RP L     P +++  +++    + +    G  K   V ++  N+   PI F G +  GA
Sbjct: 37  RPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGA 96

Query: 75  IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISR 134
                +P+     LS ++ DS  +L+IT         DL   A LL    K    GL+ R
Sbjct: 97  RVVHLSPLDGERALSHKLSDSGARLLIT--------SDL---AALLPMALKFLEKGLLDR 145

Query: 135 ---------------------SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 173
                                  +IV++ D ++ + +  + P  +V   D A L Y+ GT
Sbjct: 146 LIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWP--AVTPDDVALLQYTGGT 203

Query: 174 TGVSKGVILTHKNFIAASLMISAHQELVGELD-------HVVLCVLPMFHVFGLSVILYD 226
           TG+ KG +LTH N  +A     +  ++ G+           V+CVLP+FH++ L+VIL  
Sbjct: 204 TGLPKGAMLTHGNLTSAV----SIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLR 259

Query: 227 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS 286
            L++G+ +    +FD+    R IE+ R TV+  VP + +ALA +  + K D+SSL  +GS
Sbjct: 260 SLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGS 319

Query: 287 GAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQ 346
           G APL  E+    ++   G  +  G+GMTETC+P    +P  G  + GS G ++ G+E  
Sbjct: 320 GGAPLPVEVANFFERKT-GLKLKSGWGMTETCSP-GTGHPPEGPDKPGSIGLMLPGIELD 377

Query: 347 IVSV-DTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNCNLFSYFRSN-----DHNDFF 396
           +VS+ D  K LPP ++GE+ +RGPNVT  +    E +    +   F +      D + +F
Sbjct: 378 VVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYF 437

Query: 397 -----------CKLFQVAPAELEGLLVSHPEILDAVVI 423
                         F V P  +E  +  HP + + +VI
Sbjct: 438 FLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVI 475

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  169 bits (430), Expect = 6e-49
 Identities = 104/285 (36%), Positives = 142/285 (49%), Gaps = 32/285 (11%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
           D A +L++SGTTG  KGV LTHKN +A++  I+   +L    D   L V+P+FH+ GL V
Sbjct: 3   DPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDR-CLNVMPLFHIHGLIV 60

Query: 223 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL---AKNSLVRKFDIS 279
            L   L  G  VV   KF        I KYRVT +  VP I   L   AK +  +     
Sbjct: 61  SLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP--P 118

Query: 280 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL-VGVRRSGSAGT 338
            L+ + S +APL   +++  +K   G  + + YGMTE  A     NPL   VR+ GS G 
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVG- 175

Query: 339 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP----VFELTVNCNLFSYFRSND--H 392
             AGVE  I+  D  +PLPP Q GEI +RGPNVT       E         +FR+ D  +
Sbjct: 176 RPAGVEVAILDDD-GRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGY 234

Query: 393 NDFFCKLF--------------QVAPAELEGLLVSHPEILDAVVI 423
            D    LF              +++P E+E +L+ HP + +AVV 
Sbjct: 235 LDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVF 279

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  165 bits (419), Expect = 5e-46
 Identities = 107/425 (25%), Positives = 165/425 (38%), Gaps = 99/425 (23%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 98
                LGI   D VL+  PN   F I +  +  +GAI   A P +   E+    + S  K
Sbjct: 55  AGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAK 114

Query: 99  LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDV 157
             I                                      S  D   L+  +  ++PDV
Sbjct: 115 AYIIADRF---------------------------------SGFDYAALARELLEELPDV 141

Query: 158 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMF 215
                  A    S GTTG+ K +  TH +++ ++   SA       LD   V L VLP  
Sbjct: 142 -------ALFQLSGGTTGLPKLIPRTHNDYLYSAR-ASAE---ACGLDPGTVYLAVLPAA 190

Query: 216 HVFGL-SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 274
           H F L S  L   L  G  VV       ++A   IE+ +VT   +VP ++    + +   
Sbjct: 191 HNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWD 250

Query: 275 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE---TCAPISLENPLVGVR 331
           + D+SSL+++  G APL  EL    ++   G  + Q +GM E       +  + P V +R
Sbjct: 251 QADLSSLRVIQVGGAPLSPELARRVEE-RLGCPLQQVFGMAEGLVNYTRLD-DPPDVIMR 308

Query: 332 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSND 391
             G    +    E +IV     +P+PP ++GE+  RGP        T+      Y+R+ +
Sbjct: 309 TQGRP--ISPADEIRIVDDQG-EPVPPGEVGELLTRGP-------YTIRG----YYRAPE 354

Query: 392 HND-------FFCK--LFQ-----------------------VAPAELEGLLVSHPEILD 419
           HN        F+    L +                       ++P E+E LL+SHP + D
Sbjct: 355 HNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVAD 414

Query: 420 AVVIP 424
           A V+ 
Sbjct: 415 AAVVG 419

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  156 bits (397), Expect = 4e-43
 Identities = 111/445 (24%), Positives = 162/445 (36%), Gaps = 132/445 (29%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++     V +++     LG+   D V I A N   + I  L ++A GA+     P  + 
Sbjct: 7   TWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSP 66

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            E++  + DS  ++V                                             
Sbjct: 67  EEVAYILNDSGARVVF-------------------------------------------- 82

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-EL 204
                V D PD      D A L+Y+SGTTG  KGV+LTH+N +A     +A  E++    
Sbjct: 83  -----VEDKPD------DLATLIYTSGTTGNPKGVMLTHRNLLA---QAAALLEVIPLSP 128

Query: 205 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWVVP- 261
              VL  LP+ HVF   +  Y  L  G  V     F    E  L  + + R TV++ VP 
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVN----FAESPETLLEDLREVRPTVFFAVPR 184

Query: 262 -------PIILALAKNSLVRK--FD----ISSLKLVGSGAAPLGKELMEDCQKNIPGATI 308
                   I   +A    +++  F        L+   SG APL  E++E       G  I
Sbjct: 185 VWEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF--RALGIPI 242

Query: 309 FQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
            +GYG+TET    ++  P  G  R G+ G  + GVE +I              GEI VRG
Sbjct: 243 LEGYGLTETSGVATVNRP--GDIRIGTVGKPLPGVEVRIAED-----------GEILVRG 289

Query: 369 PNVTP-----------------------VFELTVNCNLFSYFRSND-------HNDFFCK 398
           PNV                         +  L  +  L    R  D        N     
Sbjct: 290 PNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKN----- 344

Query: 399 LFQVAPAELEGLLVSHPEILDAVVI 423
              +AP  +E  L + P I  AVV+
Sbjct: 345 ---IAPQPIENALKASPYISQAVVV 366

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  159 bits (403), Expect = 6e-43
 Identities = 111/483 (22%), Positives = 173/483 (35%), Gaps = 110/483 (22%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++      V  ++     LGI   D V IFA N   + I  L ++A+GA++       T 
Sbjct: 47  TYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTP 106

Query: 86  SELSKQVKDSNPKLVIT-VPELWDKVKDLNLPAVLLGSKDKVSSS------GLISRSSKI 138
            +L+  + +S  K++     EL D V  + L          V            +   ++
Sbjct: 107 EQLAYILNESESKVIFVENQELLDLVLPV-LEDCPKVVDLIVIIDLVREAVEAKALVLEV 165

Query: 139 VSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 196
                +         +       K  D A ++Y+SGTTG  KGV+LTH+N +A    ++ 
Sbjct: 166 FPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLA---QVAG 222

Query: 197 HQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV 254
             E++  +     VL  LP+ H+F  +      L  G  V+   K D    L  +++ R 
Sbjct: 223 IDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF--KEDPRTLLEDLKEVRP 280

Query: 255 TVWWVVPPI-------IL-ALAKNSLVRK-----------------------------FD 277
           TV   VP +       I+  +AK   VR+                              D
Sbjct: 281 TVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVAD 340

Query: 278 I-----------SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP 326
                         ++   SG APL  EL+   +    G  I +GYG+TET A +S+  P
Sbjct: 341 RLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR--SLGIPILEGYGLTETSAVVSVNPP 398

Query: 327 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP------------- 373
                  G+ G  + G+E +I              GEI VRGPNV               
Sbjct: 399 --DRFVLGTVGKPLPGIEVKIADD-----------GEILVRGPNVMKGYYKNPEATAEAF 445

Query: 374 ----------VFELTVNCNLFSYFRSNDHNDFFCKLFQ---VAPAELEGLLVSHPEILDA 420
                     + EL  +  L    R  +      KL     +AP  +E  L   P I   
Sbjct: 446 TEDGWFRTGDLGELDEDGYLVITGRKKE----LIKLSNGKNIAPEPIESKLAKSPLIEQI 501

Query: 421 VVI 423
            V+
Sbjct: 502 CVV 504

Length = 613

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  154 bits (391), Expect = 2e-42
 Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 34/288 (11%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
           D A ++Y+SGTTG  KGV+LTH N  A +  +          D ++   LP+ HV GL  
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTAS-DVLLHA-LPLHHVHGLFN 146

Query: 223 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDIS 279
            L+  L  G  V  + +FD +         R+TV+  VP I   +L   +          
Sbjct: 147 ALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAAR 206

Query: 280 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL 339
           +L+L  SG+A L   ++E  ++   G T+ + YGMTET   ++L NPL G RR G+ G  
Sbjct: 207 NLRLFVSGSAALPVPVLERWEE-RTGHTLLERYGMTETG--MALSNPLDGERRPGTVGLP 263

Query: 340 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNCNLFS---YFRSND- 391
           + GVE +IV  D  +PL   ++GEI VRGPNV   +    E T     F+   +F++ D 
Sbjct: 264 LPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEA--FTEDGWFKTGDV 321

Query: 392 ----HNDFFCKL------------FQVAPAELEGLLVSHPEILDAVVI 423
                + ++  L            ++V+  E+E  L+ HP + +  VI
Sbjct: 322 GVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVI 369

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  151 bits (384), Expect = 4e-41
 Identities = 115/419 (27%), Positives = 176/419 (42%), Gaps = 88/419 (21%)

Query: 43  HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 102
            LG+ K D V +   N +   +    +  +GA+A   N   +  EL  Q+ D+  K +IT
Sbjct: 46  ALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLIT 105

Query: 103 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQT 162
             +   K+                            V F +L+          +  +++ 
Sbjct: 106 DDDFEAKLI-----------------------PGISVKFAELMN-----GPKEEAEIQEE 137

Query: 163 ----DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF 218
               + A ++Y+SGTTG  KGVI T+ N    S + SA    + E D   L  +P+FH+ 
Sbjct: 138 FDLDEVATIMYTSGTTGKPKGVIQTYGNHWW-SAVGSALNLGLTEDD-CWLAAVPIFHIS 195

Query: 219 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK-------NS 271
           GLS IL   +  G  VV + KFD E   + ++   VT+  VV  ++  L +        S
Sbjct: 196 GLS-ILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGTYPS 254

Query: 272 LVRKFDISSLKLVGSGAAPLGKELMEDCQ-KNIPGATIFQGYGMTETCAPISLENPLVGV 330
             R        L+G G AP  K L+E C+ K IP   ++Q YGMTET + I   +P   +
Sbjct: 255 SFRCM------LLGGGPAP--KPLLEQCKEKGIP---VYQSYGMTETASQIVTLSPEDAL 303

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---ELTVNCNL---- 383
            + GSAG  +   E +I        +PP + GEI V+GPNVT  +   E           
Sbjct: 304 TKLGSAGKPLFPCELKIE--KDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGW 361

Query: 384 -----FSYFRSNDHNDFFCKLF--------------QVAPAELEGLLVSHPEILDAVVI 423
                  Y    D   F   L+               + PAE+E +L+SHP + +A V+
Sbjct: 362 FKTGDIGYL---DEEGF---LYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVV 414

Length = 483

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  150 bits (380), Expect = 3e-40
 Identities = 112/431 (25%), Positives = 189/431 (43%), Gaps = 55/431 (12%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V +++++   LG+   D V   A N+      +  V  +GA+  T NP  +  +++  + 
Sbjct: 35  VRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIIN 94

Query: 94  DSNPKLVITVPELW---DKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
            +  K++    +     + +    LP V        +     S    + ++ +L+E    
Sbjct: 95  HAEDKVIFVDDDFLPLLEAIAP-RLPTVKAVVVYDDADMPETS-LPNVYAYEELLEEESP 152

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVL 209
             + P++   +  AA L Y+SGTTG  KGV+ +H++ +  +L  +    L + E D  VL
Sbjct: 153 EYEWPELD--ENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESD-TVL 209

Query: 210 CVLPMFHV--FGLSVILYDQLQKGNCVVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILA 266
            V+PMFHV  +GL    Y     G  +V  G++      L  IE+ +VTV   VP I L 
Sbjct: 210 PVVPMFHVNAWGLP---YAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLG 266

Query: 267 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS---- 322
           L         D+SSL+ V  G + L + L+E  ++   G  +   +GMTET  P+     
Sbjct: 267 LLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEER--GVEVIHAWGMTETS-PLGTVSR 323

Query: 323 --------LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVT 372
                    E   + +R     G  V GVE +IV  +    LP +   +GE+ VRGP VT
Sbjct: 324 LKPHLVDLPEEEKLELRA--KQGRPVPGVELRIVDDEG-NELPWDGKTVGELVVRGPWVT 380

Query: 373 PVF----ELTVNCNLFSYFRSND----HNDFFCKLFQ------------VAPAELEGLLV 412
             +    E T       +FR+ D      D + ++              ++  ELE  L+
Sbjct: 381 GSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALM 440

Query: 413 SHPEILDAVVI 423
           +HP + +A V+
Sbjct: 441 AHPAVAEAAVV 451

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  144 bits (365), Expect = 7e-39
 Identities = 83/299 (27%), Positives = 130/299 (43%), Gaps = 56/299 (18%)

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV-LCVLPM 214
           D+       A ++++SG+TG  K V+ T  N +A++       E +G       L  LP+
Sbjct: 71  DLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASAR---GSAENLGLTPDDNWLLSLPL 127

Query: 215 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP----IILALAKN 270
           FHV GL+ I+   L  G  +V   KFD E    A+E + VT   +VP     ++ +L   
Sbjct: 128 FHVSGLA-IVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGAR 186

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQGYGMTETCAPISLENPLVG 329
            L      SSL+ V  G AP+   L+E   Q+ IP   ++  YGMTET + ++   P   
Sbjct: 187 WL------SSLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVATLKPDDF 237

Query: 330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP--------VFELTVNC 381
           + + GS G  + G E +IV           Q GEI VRGP++             L  + 
Sbjct: 238 LAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPSLFLGYLPQGGLTPPLDED- 287

Query: 382 NLFSYFRSND-----HNDFFC------KLF-----QVAPAELEGLLVSHPEILDAVVIP 424
               +F + D        +         L       + P E+E +L+ HP + +A V+ 
Sbjct: 288 ---GWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVG 343

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  139 bits (353), Expect = 9e-38
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 34/289 (11%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
           D AA++Y+SG+TG  KGV+L+H+N  A +  I+ + EL    D  +L VLP    +GLS 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTE--DDRILAVLPFSFDYGLSQ 60

Query: 223 ILYDQLQKGNCVVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 281
           +L    + G  +V   +F      L+ + K R+T +  VP     L +   + + D  SL
Sbjct: 61  LLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSL 119

Query: 282 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA 341
           + + +    L  + +   ++  P A +F  YG+TE      L    +  RR  S G  + 
Sbjct: 120 RYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELD-RRPDSIGKAIP 178

Query: 342 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT---------------PVFELTVNCNLFS- 385
            VE  +V  D      P ++GE+  RG NV                P         L++ 
Sbjct: 179 NVELWVVDEDG-NRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIV-LYTG 236

Query: 386 -YFRSNDHNDFF----------CKLFQVAPAELEGLLVSHPEILDAVVI 423
              R ++    +           + ++V+P E+E ++ +HP + +A VI
Sbjct: 237 DLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVI 285

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  143 bits (364), Expect = 1e-37
 Identities = 110/446 (24%), Positives = 170/446 (38%), Gaps = 84/446 (18%)

Query: 41  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE---LSKQVKDSNP 97
              LG+   DVV    PN         G    G  A  ANP+  + E   +++ ++ +  
Sbjct: 75  LHSLGVGPGDVVAFLLPNLPETHFALWG----GEAAGIANPINPLLEPEQIAELLRAAGA 130

Query: 98  KLVITV-----PELWDKVKDL-----NLPAVLL--GSKDKVSSSGLISRSS------KIV 139
           K+++T+      ++W KV ++      L  V+    ++       L           +I+
Sbjct: 131 KVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARIL 190

Query: 140 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
            F   +             +   D AA  ++ GTTG+ K    TH N +A + +      
Sbjct: 191 DFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLG--ALL 248

Query: 200 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV---SMGKFDIEMALR---AIEKYR 253
           L       V C LP+FHV  L V     L +G  VV     G     +       +E+YR
Sbjct: 249 LGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYR 308

Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
           +     VP +  AL +   V   DISSL+    GAAPL  E+    +    G  I +GYG
Sbjct: 309 INFLSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYG 366

Query: 314 MTE-TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----TLKPLPPNQLGEIWVRG 368
           +TE TC   S  NP  G RR GS G  +     ++V +D     L+    +++G + + G
Sbjct: 367 LTEATCV--SSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAG 424

Query: 369 PNVTPVFE--LTVNCNLFSYF-----------------------RSND------HNDFFC 397
           PN   VF   L    N   +                        R+ D      HN    
Sbjct: 425 PN---VFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHN---- 477

Query: 398 KLFQVAPAELEGLLVSHPEILDAVVI 423
               + PA +E  L+ HP +  A  +
Sbjct: 478 ----IDPAAIEEALLRHPAVALAAAV 499

Length = 632

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  141 bits (358), Expect = 3e-37
 Identities = 109/414 (26%), Positives = 188/414 (45%), Gaps = 41/414 (9%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +  ++ R LGI +++ VL+   ++  FP  F G I IGA+    N + T  +    + DS
Sbjct: 42  RWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDS 101

Query: 96  NPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 153
             ++++   ELW+ +K      P +    +  +   G    +    S+  LI  + +  +
Sbjct: 102 RARVLVISEELWEVLKPALQKDPHL----RHVIVVGGAGPGAL---SYAQLI--ATAAEE 152

Query: 154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCV 211
           +   +    D A  LYSSG+TG  KGV+  H + +  +    A+ + V  +  D VV   
Sbjct: 153 LEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAKNVLGITEDDVVFSA 209

Query: 212 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKN 270
             +F  +GL   LY  L  G   V M +    +     IE+Y+ TV++ VP +  A+   
Sbjct: 210 AKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAA 269

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
               + D+SSL+L  S    L  E+    ++   G  I  G G TE    I L N   G 
Sbjct: 270 PEKPERDLSSLRLCVSAGEALPAEIGYRWKELF-GLEILDGIGSTEMLH-IFLSN-RPGA 326

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNCNLFSY 386
            + G++G  V G E ++V  D  + +   ++GE+WVRG +    +    E T    +  +
Sbjct: 327 VKYGTSGKPVPGYEVKLVDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFVGEW 385

Query: 387 FRSND--HND-----FFC----KLFQ-----VAPAELEGLLVSHPEILDAVVIP 424
            R+ D  + D     ++C     + +     V+P E+E  L+ HP +L+A V+ 
Sbjct: 386 TRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVG 439

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  139 bits (353), Expect = 8e-37
 Identities = 91/341 (26%), Positives = 155/341 (45%), Gaps = 27/341 (7%)

Query: 34  VIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 92
           V KV+    + L + K + + I + NS+ + +    +  +  IA   N   T +EL  Q+
Sbjct: 37  VSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQL 96

Query: 93  KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 152
           KDS                      VL   K   + +  + + S +     +  L     
Sbjct: 97  KDSGTT-------------------VLFVEKTFQNMALSMQKVSYVQRVISITSLKEIED 137

Query: 153 DIPDVSVKQTDAAALL--YSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
              D  V++ ++A+ +  Y+SGTTG  KG +LT +N    +L  +   +L      +VL 
Sbjct: 138 RKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVL- 196

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            LP+FH+ G+ +  +  L  G  ++   KF+   AL  IEK++VTV   VP I  AL   
Sbjct: 197 -LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINC 255

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           S     ++ S++   +G AP  +ELM +      G    QG+GMTET   + + +     
Sbjct: 256 SKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDAR 313

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           R+ GS G  V   + +++  +    +   ++GE+ +RGPNV
Sbjct: 314 RKVGSIGKPVLFCDYELIDENK-NKVEVGEVGELLIRGPNV 353

Length = 496

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  137 bits (347), Expect = 4e-36
 Identities = 102/417 (24%), Positives = 159/417 (38%), Gaps = 86/417 (20%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +++ +   LG+   DVV    PN   F + +L    IGA+ +   P+Y   EL   ++ +
Sbjct: 13  RLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRERELGFILRQA 72

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
             +++  VP+ +                                              +P
Sbjct: 73  RARVLF-VPDEFRGF---------------------------------------DYAAMP 92

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
           D      D A LLY+SGTTG  KGV+ TH   +A          L    D VVL   P+ 
Sbjct: 93  D------DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP--DDVVLMPSPLA 144

Query: 216 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 275
           H+ G    L   L  G  VV   ++D   AL  I ++ VT      P +  L   +    
Sbjct: 145 HITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAADAAG 204

Query: 276 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS 335
            D+ SL++   G AP+ +EL     +   GA + + YGMTE              +R+ +
Sbjct: 205 PDLPSLRVFLCGGAPVPRELARRAAE-ALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAAT 263

Query: 336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV-TPVFELTVNCNLFS---YFRSND 391
            G  V GVE +IV  D    +PP + GE+ VRGP +     +   N   F+   +FR+ D
Sbjct: 264 DGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTGD 322

Query: 392 ------------------------HNDFFCKLFQVAPAELEGLLVSHPEILDAVVIP 424
                                    N        ++  E+E LL+ HP + +  V+ 
Sbjct: 323 LGRLDADGYLRITGRKKDIIIRGGEN--------ISAREIEDLLLRHPAVAEVAVVA 371

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  139 bits (351), Expect = 4e-36
 Identities = 106/352 (30%), Positives = 169/352 (48%), Gaps = 30/352 (8%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
           LG+ K D V +  PN + +PI   G++  G I    NP+YT  EL  Q+ DS  K ++ V
Sbjct: 69  LGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIV 128

Query: 104 PE----LWDKVKDLNLPAVLLGSKDKVSSSG---LISRSSKIV-------------SFHD 143
                 L   V    +  V+L       S+    L++   K +             SF  
Sbjct: 129 SNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRS 188

Query: 144 LIELSGSVTDI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELV 201
            +     +  + P++     D A L Y+ GTTGV+KG +LTH+N +A       A+  L+
Sbjct: 189 ALHKGRRMQYVKPELV--PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLL 246

Query: 202 GELDHVVLCVLPMFHVFGLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 259
                +V+  LP++H+F L+V  +L+ +L   N +++  + DI   ++ ++KY  T    
Sbjct: 247 HPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPR-DIPGFVKELKKYPFTAITG 305

Query: 260 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 319
           V  +  AL  N   ++ D SSLKL   G   + + + E   K + G  + +GYG+TE C+
Sbjct: 306 VNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVK-LTGQYLLEGYGLTE-CS 363

Query: 320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           P+   NP      SGS G  V   E ++V  D    +PP + GE+WV+GP V
Sbjct: 364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQV 414

Length = 560

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  136 bits (346), Expect = 2e-35
 Identities = 103/351 (29%), Positives = 171/351 (48%), Gaps = 20/351 (5%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++   + V +V+ +   LG+ K D V     NS  + + +L     GA+    N + T 
Sbjct: 38  TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTG 97

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS--KIVSFHD 143
            EL+  +  S  +  +  P L    +       LL     + S  L  R +    + F D
Sbjct: 98  EELAYILDHSGARAFLVDPALAPTAEAA---LALLPVDTLILSLVLGGREAPGGWLDFAD 154

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELV 201
             E +GSV + PDV +   D A +LY+SGT  + KG +LTH+  IA   S +++      
Sbjct: 155 WAE-AGSVAE-PDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVA------ 206

Query: 202 GEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 259
           G++  D + L  LP++H   L V L   L  G   V +   D E+ LR IE  R+T ++ 
Sbjct: 207 GDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFA 266

Query: 260 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 319
            P + ++L ++      D+SSL+    GA+ +  E++++ ++ +PG   +  YG TE  A
Sbjct: 267 PPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEI-A 325

Query: 320 PI-SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 369
           P+ ++  P   +RR GSAG  V  VE ++V  D    + P ++GEI  R P
Sbjct: 326 PLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSP 375

Length = 523

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  133 bits (337), Expect = 7e-35
 Identities = 101/428 (23%), Positives = 169/428 (39%), Gaps = 82/428 (19%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++         ++ + +  GI     V +   NSI   +     + +GA  +  N   T 
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
           +E + Q++D + +L++T                          S L  +  +  S   + 
Sbjct: 61  NERTNQLEDLDVQLLLT-------------------------DSLLEEKDFQADSLDRI- 94

Query: 146 ELSGSVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
                     + S+  +      A L+++SGTTG  K V  T +N   AS + S      
Sbjct: 95  ----EAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRN-HYASAVGSKENLGF 149

Query: 202 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 261
            E D+ +L  LP++H+ GLS++    ++     +      +   L  I   RVT   +VP
Sbjct: 150 TEDDNWLL-SLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVP 205

Query: 262 PIILALAK----NSLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQGYGMTE 316
             +  L      N  +RK       L+G  A P    L+E+  Q  +P   I+  YGMTE
Sbjct: 206 TQLNRLLDEGGHNENLRKI------LLGGSAIPA--PLIEEAQQYGLP---IYLSYGMTE 254

Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
           TC+ ++   P +   R    G  +AG E +I  VD  +       GEI V+G N+   + 
Sbjct: 255 TCSQVTTATPEMLHAR-PDVGRPLAGREIKI-KVDNKE-----GHGEIMVKGANLMKGYL 307

Query: 376 ---ELTVNCNLFSYFRSND----HNDFFCKLF------------QVAPAELEGLLVSHPE 416
              ELT       +F + D      + F  +              + P E+E +L  HP 
Sbjct: 308 YQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPG 367

Query: 417 ILDAVVIP 424
           I +AVV+P
Sbjct: 368 IQEAVVVP 375

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  133 bits (337), Expect = 4e-34
 Identities = 116/429 (27%), Positives = 188/429 (43%), Gaps = 56/429 (13%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-- 101
            G+ K   V I  PN + +P+    V+  G +    NP+YT  EL  Q+KDS  + ++  
Sbjct: 68  RGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVL 127

Query: 102 -----TVPELWDKVKDLNLPAVLLGSK-DKVSSSGLI-----SRSSKIV---------SF 141
                TV ++  K     +  V++ S  D +   G I      R  K+V          F
Sbjct: 128 ENFATTVQQVLAKT---AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRF 184

Query: 142 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
           +D +      T  P V +   D A L Y+ GTTGVSKG  L H+N +A  L + A  +  
Sbjct: 185 NDALAEGARQTFKP-VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPA 243

Query: 202 ----GELDHVV-LCVLPMFHVFGLSVILYDQLQKGNC-VVSMGKFDIEMALRAIEKYRVT 255
                  D +  +C LP++H+F L+V     ++ G   ++     DI   ++ ++KY+V 
Sbjct: 244 FEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVH 303

Query: 256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 315
           ++  V  +  AL  N    K D S L +   G   + + + E   + + G  I +GYG++
Sbjct: 304 IFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLE-MTGCPITEGYGLS 362

Query: 316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
           ET +P++  NP+     SG+ G  +   E  I   D    LP  + GEI +RGP V   +
Sbjct: 363 ET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGY 420

Query: 376 -----ELTVNCNLFSYFRSND----HNDFFCKL------------FQVAPAELEGLLVSH 414
                E         +FR+ D        + K+            F V P E+E ++ SH
Sbjct: 421 WNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASH 480

Query: 415 PEILDAVVI 423
           P +L+   +
Sbjct: 481 PGVLEVAAV 489

Length = 557

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  132 bits (335), Expect = 4e-34
 Identities = 114/433 (26%), Positives = 176/433 (40%), Gaps = 83/433 (19%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 97
           H  R LG+ + DVV I   N+   F + +    + G   +  N   T +E++  V DS  
Sbjct: 26  HGLRALGLREGDVVAILLENNPEFFEVYWAARRS-GLYYTPINWHLTAAEIAYIVDDSGA 84

Query: 98  KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 157
           K++I    L D   +L    +  G    +  +G +       S+ + +  +   T I D 
Sbjct: 85  KVLIVSAALADTAAEL-AAELPAGVPLLLVVAGPVPGFR---SYEEALA-AQPDTPIAD- 138

Query: 158 SVKQTDAAALLYSSGTTGVSKGVI--LTHKNFIAASLMISA--HQELVGELDHVVLCVLP 213
              +T  A +LYSSGTTG  KG+   L   +   A  M+ A     + G  D V L   P
Sbjct: 139 ---ETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAP 195

Query: 214 MFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILA 266
           ++H     FG+S      L  G  VV M KFD E AL  IE+YRVT   +VP +   +L 
Sbjct: 196 LYHTAPLRFGMSA-----LALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLK 250

Query: 267 LAKNSLVR-KFDISSLKLVGSGAAPLG---KELMEDCQKNIPGATIFQGYGMTETCAPIS 322
           L +   VR ++D+SSL++    AAP     K  M D      G  I + Y  +E    ++
Sbjct: 251 LPEE--VRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW----GPIIHEYYASSEGGG-VT 303

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCN 382
           +      +   GS G  V G E +I+  +    LPP ++G ++                 
Sbjct: 304 VITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVYFEMDGYP---------- 351

Query: 383 LFSYF------RSNDH-NDFFC------------------KLFQVA-------PAELEGL 410
            F Y        +  + + +                    K   +        P E+E L
Sbjct: 352 -FEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENL 410

Query: 411 LVSHPEILDAVVI 423
           LV+HP++ D  V 
Sbjct: 411 LVTHPKVADVAVF 423

Length = 502

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  132 bits (334), Expect = 4e-34
 Identities = 101/341 (29%), Positives = 160/341 (46%), Gaps = 35/341 (10%)

Query: 46  ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE--LSKQVKDSNPKLVITV 103
             + + + I  P+S+   +  L ++  G +    N  +T  E  L    K +  K VIT 
Sbjct: 28  TKEGENIGIMLPSSVAGALANLALLLAGKVPVMLN--FTAGEEGLRSACKQAGIKTVITS 85

Query: 104 PELWDKVKDLNLPAVLLGSKDKVSSSGL---ISRSSKIVSFHDLIELSGSVTD----IPD 156
               +K+K L    VLL     V    L   IS++ K+ +F     L+  +      +  
Sbjct: 86  RAFLEKLK-LEGLVVLLEGVRIVYLEDLRAKISKADKLKAF-----LAAKLPPALLRLFL 139

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 216
              K  D A +L++SG+ G+ KGV+L+H+N +A    I+A  +L    + V+L  LP+FH
Sbjct: 140 AGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNT--EDVLLGALPLFH 197

Query: 217 VFGLSVILYDQLQKGNCVVSMGKF------DIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            FGL+V L   L  G     +         D +     I  Y+ T+    P  +   A+N
Sbjct: 198 AFGLTVTLLLPLLTG-----LRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGYARN 252

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
           +     D SSL+LV +GA  L +   E  ++   G  I +GYG TE    IS+  P+   
Sbjct: 253 A--HPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISVNTPMG-- 307

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
            + G+ G  + G+E +IVS +T + LP  + G + VRGPNV
Sbjct: 308 NKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNV 348

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  129 bits (327), Expect = 5e-33
 Identities = 101/337 (29%), Positives = 158/337 (46%), Gaps = 19/337 (5%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           ++++    LG+   D V +    S      +L  +  GA+    N  YT++EL   + D+
Sbjct: 40  RLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDA 99

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL-SGSVTDI 154
            P LV+  P  +  +  +   A   G+   V +       S       L+E  + +  D 
Sbjct: 100 EPALVVCDPANFAWLSKI---AAAAGAP-HVETLDADGTGS-------LLEAAAAAPDDF 148

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
             V     D AA+LY+SGTTG SKG +L+H N ++ +L +          D V++  LP+
Sbjct: 149 ETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTL--VDYWRFTPDDVLIHALPI 206

Query: 215 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 274
           FH  GL V     L  G  ++ + KFD +  L  +   R TV   VP     L +   + 
Sbjct: 207 FHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLT 264

Query: 275 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG 334
           +   + ++L  SG+APL  E   + Q+   G  I + YGMTET    S  NP  G RR+G
Sbjct: 265 REAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTS--NPYDGERRAG 321

Query: 335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           + G  + GV  ++   +T   LPP ++G I V+GPNV
Sbjct: 322 TVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNV 358

Length = 504

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  130 bits (328), Expect = 5e-33
 Identities = 109/428 (25%), Positives = 187/428 (43%), Gaps = 56/428 (13%)

Query: 43  HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK---- 98
           H  +   D + +  PN + +P+   G +  G I    NP+YT  E+  Q  DS  K    
Sbjct: 69  HTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVC 128

Query: 99  --------------------LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 138
                               +V  V ++   +K L + AV+   K  V +  L     + 
Sbjct: 129 LANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL----PQA 184

Query: 139 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
           V F+D +   G+   + + + +  D A L Y+ GTTGV+KG +LTH+N +A  L   A  
Sbjct: 185 VKFNDALAK-GAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM 243

Query: 199 E-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEKYRVTV 256
              + E   +++  LP++H++  +      +  GN  ++     D+   ++ + K++ + 
Sbjct: 244 GSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG 303

Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
           +  +  + +AL  N   RK D S+LKL  SG   L     E   K + G  I +GYGMTE
Sbjct: 304 FVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAE-RWKEVTGCAICEGYGMTE 362

Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
           T +P+   NP   + + G+ G  V     +++  D    LP  ++GE+ V+GP V   + 
Sbjct: 363 T-SPVVSVNPSQAI-QVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYW 419

Query: 376 ---ELTVNC-NLFSYFRSND----HNDFFCKL------------FQVAPAELEGLLVSHP 415
              E T    +   + ++ D      D + ++            F V P ELE +L + P
Sbjct: 420 QRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALP 479

Query: 416 EILDAVVI 423
            +L    I
Sbjct: 480 GVLQCAAI 487

Length = 562

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  127 bits (321), Expect = 6e-32
 Identities = 109/438 (24%), Positives = 186/438 (42%), Gaps = 71/438 (16%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 101
           R  G+   D V +F PN   F I F G++ +GA+    +P++   ELS ++ D+  ++++
Sbjct: 76  RQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLL 135

Query: 102 TVPELWDKVKD----LNLPAVLLGSKDKVSSS-------GLISRSSKIVS-FHDLIE-LS 148
            + +L   V+      +L  V++ S   V  +         +       +   DL+  L 
Sbjct: 136 ALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALR 195

Query: 149 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI---AASLMISAHQELVGELD 205
                +P         AAL Y+ GTTG+ KG   T ++ +   AA+  ++    +VG  D
Sbjct: 196 ACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGED 251

Query: 206 HVVLCVLPMFHV----FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 261
            V L  LP F +    FGL   L+     G  +V + ++D    + A+E+YRVT   ++ 
Sbjct: 252 SVFLSFLPEFWIAGENFGLLFPLFS----GATLVLLARWDAVAFMAAVERYRVTRTVMLV 307

Query: 262 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ---KNIPGATIFQG-YGMTET 317
              + L  +    ++D+SSL+ V        K+L  D +   + + G+ + +  +GMTET
Sbjct: 308 DNAVELMDHPRFAEYDLSSLRQVR--VVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTET 365

Query: 318 --CAPIS---------LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 366
             C   +         L +  V V      G  V G E +I   +T + LP    GEI V
Sbjct: 366 HTCDTFTAGFQDDDFDLLSQPVFV------GLPVPGTEFKICDFETGELLPLGAEGEIVV 419

Query: 367 RGPNVTPVF----ELTVNCNLFSYFRSNDHNDFFCKLF----------------QVAPAE 406
           R P++   +    E T       +  + D      + F                 V P+E
Sbjct: 420 RTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSE 479

Query: 407 LEGLLVSHPEILDAVVIP 424
           +E LL  HP +L + V+ 
Sbjct: 480 VEALLGQHPAVLGSAVVG 497

Length = 567

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  126 bits (318), Expect = 1e-31
 Identities = 113/433 (26%), Positives = 194/433 (44%), Gaps = 56/433 (12%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 101
           +H  +   D + +  PN + +PI   G +  G I    NP+YT  E+  Q KDS  + ++
Sbjct: 68  QHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALV 127

Query: 102 TVPELWDKVKDLNLPAV----LLGSK-----------------DKVSSSGLISRSSKIVS 140
            +      V+++ LP      L+ +K                 DKV          + V 
Sbjct: 128 YLNMFGKLVQEV-LPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVP 186

Query: 141 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--- 197
           F   +   G    +  V V   D A L Y+ GTTG++KG +LTH N +A  L + A    
Sbjct: 187 FKQALRQ-GRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 198 -----QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEK 251
                Q L+ E   V++  LP++H++  +      +  GN  V+     DI   ++ + K
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGK 305

Query: 252 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG 311
           +R +    +  + +AL  +   +  D S+LKL  SG   L K   E  ++ + G TI +G
Sbjct: 306 WRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVEG 364

Query: 312 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           YG+TET +P++  NP   + R G+ G  V G   +++  D  + LP  + GE+ ++GP V
Sbjct: 365 YGLTET-SPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNE-LPLGERGELCIKGPQV 422

Query: 372 TPVF----ELTVNC-NLFSYFRSND----HNDFFCKL------------FQVAPAELEGL 410
              +    E T    +   +F++ D      D F ++            F V P E+E +
Sbjct: 423 MKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDV 482

Query: 411 LVSHPEILDAVVI 423
           +++HP++ +   I
Sbjct: 483 VMAHPKVANCAAI 495

Length = 562

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  122 bits (308), Expect = 3e-31
 Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 15/223 (6%)

Query: 161 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 220
             D AA  ++ GTTG  K    +H+N +A + M +    L      V+L  LP+FHV G 
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLG--PGDVLLNGLPLFHVGGA 58

Query: 221 SVILYDQLQKGNCVV---SMGKFDIEMA---LRAIEKYRVTVWWVVPPIILALAKNSLVR 274
            V     L +G  VV     G  +  +     + +E+YRVT+   VP ++ AL +  L  
Sbjct: 59  IVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGD 118

Query: 275 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG 334
             DISSL+   +GAAPL  E+    +  + G  + +GYGMTE     ++ NP  G RR G
Sbjct: 119 A-DISSLRYALTGAAPLPVEVARRFEA-VTGVPVVEGYGMTEGTGVSAI-NPRGGPRRPG 175

Query: 335 SAGTLVAGVEAQIVSVD----TLKPLPPNQLGEIWVRGPNVTP 373
           S G  +     ++  +D      +   P ++G + +RGPNV P
Sbjct: 176 SVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFP 218

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  124 bits (315), Expect = 4e-31
 Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 62/368 (16%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT- 102
           LGI K D V I+APN   + +       IGAI  T NP Y +SEL   +  S  K +I  
Sbjct: 63  LGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAA 122

Query: 103 ---------------VPELWD----KVKDLNLPA----VLLGSKDKVSSSGLISRSSKIV 139
                           PEL      +++   LP     + LG +          +   ++
Sbjct: 123 DGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE----------KHPGML 172

Query: 140 SFHDLIELSGSVTD--IPDV--SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 195
           +F +L+ L  +V D  +     ++   D   + Y+SGTTG  KG  LTH+N +     I 
Sbjct: 173 NFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIG 232

Query: 196 AHQELVGELDHVVLCVLPMFHVFG--LSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKY 252
              +L  E D + + V P++H FG  L  +    +  G  +V  G  FD    L A+E+ 
Sbjct: 233 EAMKL-TEEDRLCIPV-PLYHCFGMVLGNL--ACVTHGATMVYPGEGFDPLATLAAVEEE 288

Query: 253 RVTVWWVVPPIILALAKNSLVRKFDISSLK---LVGSGAAPLGKELMEDCQK--NIPGAT 307
           R T  + VP + +A   +    +FD+SSL+   + GS   P   E+M+      ++   T
Sbjct: 289 RCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGS---PCPIEVMKRVIDKMHMSEVT 345

Query: 308 IFQGYGMTETCAPISL----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGE 363
           I   YGMTET +P+S     ++PL   +R  + G  +  +E +IV  +T + +P  + GE
Sbjct: 346 I--AYGMTET-SPVSTQTRTDDPL--EKRVTTVGRALPHLEVKIVDPETGETVPRGEQGE 400

Query: 364 IWVRGPNV 371
           +  RG +V
Sbjct: 401 LCTRGYSV 408

Length = 559

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  123 bits (310), Expect = 1e-30
 Identities = 112/424 (26%), Positives = 174/424 (41%), Gaps = 78/424 (18%)

Query: 45  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 104
           G+   D VLI   N   F    L    +GAIA   N   T  E++  V D    +V+T  
Sbjct: 63  GVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEA 122

Query: 105 ELW-------DKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---SVTDI 154
            L        D V  L+   V  GS D             ++ + DL+  +G   +  DI
Sbjct: 123 ALAPVATAVRDIVPLLSTVVVAGGSSD-----------DSVLGYEDLLAEAGPAHAPVDI 171

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
           P+ S      A ++Y+SGTTG  KG +LTH N    ++            D V    +P+
Sbjct: 172 PNDS-----PALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSD-VGFVGVPL 225

Query: 215 FHVFGL-SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
           FH+ G+ S++    L     +  +G FD    L  +E  +VT  ++VP    A+      
Sbjct: 226 FHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQA 285

Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE----TCAPISLENPLVG 329
           R  D+ +L+++  GAAP    L+       P A I   +G TE    TC        L+G
Sbjct: 286 RPRDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCM-------LLG 337

Query: 330 ---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNCN 382
              +R+ GS G ++  V A++V  + +  +P  ++GEI  R P +   +    E T    
Sbjct: 338 EDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF 396

Query: 383 LFSYFRSND-----------------------HNDFFCKLFQVAPAELEGLLVSHPEILD 419
              +F S D                         + +C       AE+E +L SHP+I++
Sbjct: 397 AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYC-------AEVENVLASHPDIVE 449

Query: 420 AVVI 423
             VI
Sbjct: 450 VAVI 453

Length = 542

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  120 bits (303), Expect = 3e-30
 Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 38/342 (11%)

Query: 42  RHL----GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 97
           RHL    G+   D V +    S    +  L V+  GA     +P Y    L+  ++D+  
Sbjct: 14  RHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGA 73

Query: 98  KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 157
           +L++T   L  ++  L LP +LL   +  +                           PD 
Sbjct: 74  RLLLTDSALASRLAGLVLPVILLDPLELAALD------------------DAPAPPPPDA 115

Query: 158 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 217
                D A ++Y+SG+TG  KGV++TH++    +L+    +    + D  VL        
Sbjct: 116 PSGPDDLAYVIYTSGSTGRPKGVVVTHRS--LVNLLAWLARRYGLDPDDRVLQFAS--LS 171

Query: 218 FGLSVI-LYDQLQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
           F  SV  ++  L  G  +V       + D  +    I ++ VTV  + P ++  LA    
Sbjct: 172 FDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA---A 228

Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET---CAPISLENPLVG 329
                ++SL+LV  G   L   L++  +   PGA +   YG TET        ++     
Sbjct: 229 ALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAP 288

Query: 330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                  G  +A     ++  D L+P+P   +GE+++ GP V
Sbjct: 289 RESPVPIGRPLANTRLYVLD-DDLRPVPVGVVGELYIGGPGV 329

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  121 bits (305), Expect = 3e-30
 Identities = 113/426 (26%), Positives = 183/426 (42%), Gaps = 55/426 (12%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S++ F   +++ +      GI + DVV +   NS  F         +GA+    N     
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            E++  + D+  KL++ V E +D +  L  P +++ +  +  S  L              
Sbjct: 89  DEVAYILGDAGAKLLL-VDEEFDAIVALETPKIVIDAAAQADSRRLAQ------------ 135

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI------AASLMISAHQE 199
              G +   P  +V  TD   L+Y+SGTT   KGV+ ++ N          +L ++A + 
Sbjct: 136 ---GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASER 192

Query: 200 L--VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
           L  VG L HV    LP     G++V     L  G  +    +FD E  L AIE++R+T  
Sbjct: 193 LLVVGPLYHVGAFDLP-----GIAV-----LWVGGTLRIHREFDPEAVLAAIERHRLTCA 242

Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET 317
           W+ P ++  +       +FD+ SL     G     +  + D  +    A     YG+TET
Sbjct: 243 WMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTET 302

Query: 318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-- 375
           C+  +L      + + GS G  +A VE +I      + LPPN  GEI +RGP VT  +  
Sbjct: 303 CSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWK 361

Query: 376 --ELTVNCNLFSYFRSND--HNDFFCKLF--------------QVAPAELEGLLVSHPEI 417
             E T       +FRS D  + D    L+               +A +E+E ++   PE+
Sbjct: 362 DPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEV 421

Query: 418 LDAVVI 423
            +A VI
Sbjct: 422 AEAAVI 427

Length = 497

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  121 bits (306), Expect = 4e-30
 Identities = 97/352 (27%), Positives = 155/352 (44%), Gaps = 31/352 (8%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
           LG+   D V I+APN   + +       IGAI    NP Y  SEL   +  S  + VI  
Sbjct: 65  LGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICA 124

Query: 104 PEL--WDKVKDLN--LPAVLLGSKDKVSSSGL----------ISRSSKIVSFHDLIELSG 149
                 D    L   LP +  G    ++   L           +     +++H+L     
Sbjct: 125 DAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGE 184

Query: 150 SVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           +V+       + +    D   + Y+SGTTG  KG  L+H N +     ++   E +G  +
Sbjct: 185 TVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVA---ESLGLTE 241

Query: 206 HVVLCV-LPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPI 263
           H  LCV +P++H FG+ +     +  G C+V   + FD    L+A+E+ R T  + VP +
Sbjct: 242 HDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTM 301

Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
            +A   +     FD+SSL+      AP   E+M      +  A +   YGMTET +P+SL
Sbjct: 302 FIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTET-SPVSL 360

Query: 324 ----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                + L   RR  + G     +E ++V  D    +P  ++GE+  RG +V
Sbjct: 361 QTTAADDL--ERRVETVGRTQPHLEVKVVDPDG-ATVPRGEIGELCTRGYSV 409

Length = 558

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  121 bits (306), Expect = 4e-30
 Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 34/355 (9%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
           L + K D V +  PN + +PI   GV+  G      NP+YT  EL  Q+ DS   +++ +
Sbjct: 71  LQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVI 130

Query: 104 PELWDKVK----DLNLPAVL---LGSKDKVSSSGLIS-------------RSSKIVSFHD 143
                 V+    D  +  V+   LG       + L++             R +  + F +
Sbjct: 131 DNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFRE 190

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG- 202
            + L G    +P + ++  D A L Y+ GTTGV+KG +LTH+N +A   M  AHQ L G 
Sbjct: 191 ALAL-GRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVAN--MQQAHQWLAGT 247

Query: 203 ----ELDHVVLCVLPMFHVFGLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
               E   VV+  LP++H+F L+   +++ ++   N ++S  + D+   ++ ++K R T 
Sbjct: 248 GKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTA 306

Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
           +  V  +   L       + D SSLK+   G   + + + E   K + G T+ + YG+TE
Sbjct: 307 FTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAER-WKQVTGLTLVEAYGLTE 365

Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           T +P +  NPL     +GS G  +   +A I   D    L   ++GE+ ++GP V
Sbjct: 366 T-SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQV 418

Length = 560

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  122 bits (309), Expect = 6e-30
 Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 14/224 (6%)

Query: 158 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 217
           + K  D A +++SSG+ G  KGV+L+H N ++    IS         D V+L  LP FH 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQIS--DVFNLRNDDVILSSLPFFHS 835

Query: 218 FGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF 276
           FGL+V L+  L +G  VV      D     + + K+R T+    P  +    +N  +   
Sbjct: 836 FGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPL 895

Query: 277 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP---------L 327
             +SL+LV +GA  L  E+ +  ++   G  I +GYG TET    S+  P          
Sbjct: 896 MFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQ 954

Query: 328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
            G +  GS G  + GV  +IV  +T + LPP + G I + GP V
Sbjct: 955 TGSKE-GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQV 997

Length = 1146

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  121 bits (305), Expect = 7e-30
 Identities = 118/448 (26%), Positives = 186/448 (41%), Gaps = 79/448 (17%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V+ ++     LG+   DVV I A NS  +    L V   G I +  N  ++  E    + 
Sbjct: 42  VLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAML 101

Query: 94  DSNPKLVIT---VPELWDKVKDLNLPA----VLLGSKDKVSSSGLISRSSKIVSFHDLIE 146
              P +++T       ++++++  LP+    V L S        L S  +      ++++
Sbjct: 102 LVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTT-----EMLK 156

Query: 147 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELD 205
                T   D +    DA  + ++SGTTG  KGV ++H   I  SL   A   +VG   D
Sbjct: 157 QRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSL---AKIAIVGYGED 213

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI-- 263
            V L   P+ H+ GLS  L   L  G C V + KFD + AL+AI+++ VT    VP +  
Sbjct: 214 DVYLHTAPLCHIGGLSSAL-AMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMA 272

Query: 264 -ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS 322
            +++L + S+  K   S  K++ +G   L   L+ D +K  P A +F  YGMTE C+ ++
Sbjct: 273 DLISLTRKSMTWKVFPSVRKIL-NGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLT 331

Query: 323 --------LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP----------PNQLGEI 364
                   LE+P   ++      +       Q   V   KP P           +++G I
Sbjct: 332 FMTLHDPTLESPKQTLQTVNQTKSSSVH---QPQGVCVGKPAPHVELKIGLDESSRVGRI 388

Query: 365 WVRGP---------NVTPVFELTVNC--------------NLFSYFRSND------HNDF 395
             RGP         N      L+ +               NL+   RSND       N  
Sbjct: 389 LTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGEN-- 446

Query: 396 FCKLFQVAPAELEGLLVSHPEILDAVVI 423
                 V P E+E +L  HP +   VV+
Sbjct: 447 ------VYPEEVEAVLSQHPGVASVVVV 468

Length = 563

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  120 bits (304), Expect = 9e-30
 Identities = 96/374 (25%), Positives = 142/374 (37%), Gaps = 77/374 (20%)

Query: 50  DVVLIFAPNSIHFPICFLGVIAIGAIASTANP----VYTVSELSKQVKDSNPKLVITVPE 105
           D VL+ AP  + F   F G +  GAIA  A P       ++ L+  + D+  + V+T   
Sbjct: 48  DRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSA 107

Query: 106 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 165
           +   ++        L                 ++   D +    +  D         D A
Sbjct: 108 VLAALRAALAAPAALLL---------------LLIAADDLAALAA-ADWRPPPPDPDDIA 151

Query: 166 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 225
            L Y+SG+TG  KGV++TH N +A    I+    L    D  V   LP++H  GL   L 
Sbjct: 152 FLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGL-DPDDVGVSW-LPLYHDMGLIGGLL 209

Query: 226 DQLQKGNCVVSMGKFDIEMA--------LRAIEKYRVTVWWVVPPIILALAKNSLVRK-- 275
             L  G  VV M      +A        L AI +YR TV    P     L     VR+  
Sbjct: 210 QPLYAGFPVVLMSP----LAFLRRPLRWLEAISRYRATVSG-APNFAYDLC----VRRVR 260

Query: 276 ------FDISSLKLVGSGAAPLGKELMED-CQKNIP----GATIFQGYGMTETCAPIS-- 322
                  D+SS ++  +GA P+  + +E   ++  P           YG+ E    +S  
Sbjct: 261 DEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGG 320

Query: 323 -LENPLV----------------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN 359
                 V                        R   S G  + G E +IV  +T +PLP  
Sbjct: 321 PPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDG 380

Query: 360 QLGEIWVRGPNVTP 373
           ++GEIWVRGP+V  
Sbjct: 381 EVGEIWVRGPSVAA 394

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  114 bits (288), Expect = 4e-28
 Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 44/292 (15%)

Query: 162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 221
            D AA+LY+SGTTG  KGV+LTH   + A+ + +    L    D V+L  LP+FH+   +
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGL--RPDDVLLTPLPLFHINAQA 138

Query: 222 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VRKFDISS 280
             +Y  L  G  +V + +F        + K+  TV+ ++  +   L K        D   
Sbjct: 139 YSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD-HP 197

Query: 281 LKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV 340
           L+ V    APL   +    ++   G  + +GYGMTET  PI            GS G   
Sbjct: 198 LRFVFG--APLPAAIWPAFEERF-GVKLVEGYGMTETGVPI---IAPGDPAPPGSCGRPR 251

Query: 341 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------ELTVNC--NLFSYFRSND 391
            GVE +IV  D  + +PP ++GE+ VR      +F       E T     N +  F + D
Sbjct: 252 PGVEVRIVDEDG-REVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAWRNGW--FHTGD 308

Query: 392 ------HNDFFCKLFQ-------------VAPAELEGLLVSHPEILDAVVIP 424
                     +   F              ++  E+E  +++HP + +A V+ 
Sbjct: 309 RGRRDEDGFLY---FVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  115 bits (289), Expect = 8e-28
 Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 11/234 (4%)

Query: 143 DLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
           DL+  +      P V+     D A L Y+ GTTG  KGV+ TH++    + +  A  E  
Sbjct: 148 DLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWP 207

Query: 202 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 261
            +     L   P+ H  G        L +G  V+ + KFD    LRAIE+ R+T  ++VP
Sbjct: 208 ADPR--FLMCTPLSHAGGAFF--LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVP 263

Query: 262 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 321
            +I AL  +  +R  D+SSL+ V  GA+P+    + +  +   G    Q YG TE    I
Sbjct: 264 TMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVI 322

Query: 322 SL----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           +     ++     +R  S G    G+   ++  +  + +   ++GEI VRGP V
Sbjct: 323 TYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLV 375

Length = 524

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  112 bits (283), Expect = 5e-27
 Identities = 95/386 (24%), Positives = 149/386 (38%), Gaps = 84/386 (21%)

Query: 33  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 92
             + +    R LG+   D + IFA N   + I      +                     
Sbjct: 14  RALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQS------------------- 54

Query: 93  KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 152
                  ++ VP L+D    L   A+     ++   S +   + K+ SF +L EL G   
Sbjct: 55  -------LVIVP-LYDT---LGEEAIEY-ILNETEISIVFCDAVKVYSFEELEEL-GKKN 101

Query: 153 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLCV 211
            +P    K  D A ++Y+SGTTG  KGV+LTH N +A    +     E +G  D V +  
Sbjct: 102 KVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTD-VYISY 160

Query: 212 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI-------I 264
           LP+ H+F   V     L  G   +     D       I++ + TV+  VP +       I
Sbjct: 161 LPLAHIFERVVENVC-LYIG-GRIGYYSGDTRGLKGDIKELKPTVFVGVPRVLDRIYKGI 218

Query: 265 LA-LAKNSLVRK--FDISS---------------------------------LKLVGSGA 288
           LA +     +++  F+ +                                  ++L+ SG 
Sbjct: 219 LAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGRVRLMLSGG 278

Query: 289 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 348
           APL  +  E   +   G  + QGYG+TETCA  +L +P  G   +G  G  +   E ++V
Sbjct: 279 APLSPDTQEFL-RVALGCPVLQGYGLTETCAGGTLSDP--GDTTTGHVGPPLPCCEIKLV 335

Query: 349 SVDTL--KPLPPNQLGEIWVRGPNVT 372
            V  +          GEI +RGPNV 
Sbjct: 336 DVPEMGYFAKDDPPRGEICIRGPNVF 361

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  111 bits (280), Expect = 1e-26
 Identities = 82/339 (24%), Positives = 141/339 (41%), Gaps = 6/339 (1%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V+ ++   R LG+ + + V I+    +       G    G +    NP+    +++  + 
Sbjct: 35  VLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILA 94

Query: 94  DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 153
           D N +L++T  E  D +         L +   V      S            +L      
Sbjct: 95  DCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDA 154

Query: 154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 213
            P   V  +D AA+LY+SG+TG  KGV+L+H+N +A +  ++ + E     D  +L VLP
Sbjct: 155 DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLEN--RPDDRLLAVLP 212

Query: 214 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
           +   +G +  L      G  VV          L+A+EK+ +T    VPP+   LA+    
Sbjct: 213 LSFDYGFNQ-LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW- 270

Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 333
            +    SL+ + +    + +  +   +  +P A +F  YG+TE      L    V  RR 
Sbjct: 271 PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVD-RRP 329

Query: 334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
            S G  +   E  ++  D  +   P + GE+  RG  V 
Sbjct: 330 DSIGKAIPNAEVLVLREDGSECA-PGEEGELVHRGALVA 367

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  110 bits (277), Expect = 3e-26
 Identities = 104/449 (23%), Positives = 180/449 (40%), Gaps = 73/449 (16%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++        +++ +   LGI K DVV + APN+        GV   GA+    N     
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS----RSSKIVSF 141
            +++  +  S  K++    E     ++      LL +K+ + +  ++       S+   +
Sbjct: 91  DDIAFILNHSEAKVLFVDQEFLSLAEEA---LALLSTKEIIDTEIIVISPAAEDSEEGDY 147

Query: 142 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN-FIAASLMISAHQEL 200
            DL+   G    +P     + D  +L Y+SGTTG  KGV+ TH+  ++ A   +      
Sbjct: 148 EDLLA-GGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEW--- 203

Query: 201 VGELDH--VVLCVLPMFH------VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY 252
              +    V L  LPMFH       + ++ +       G   V + K D       IEK+
Sbjct: 204 --GMPDRPVYLWTLPMFHCNGWCFPWAITAV-------GGTHVCLRKVDAPAIYDLIEKH 254

Query: 253 RVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAPLGK--ELMEDCQKNIPGATIF 309
           +VT     P ++  LA      K  +   ++++ +GA P     + ME+      G  + 
Sbjct: 255 KVTHLCGAPTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEEL-----GFEVT 309

Query: 310 QGYGMTETCAPIS-------LENPLVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLP 357
             YG+TET  PI+        +      R     R G     V   E  +V  +T+K +P
Sbjct: 310 HVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVR--YVGLEEVDVVDPETMKDVP 367

Query: 358 PN--QLGEIWVRGPNVTPVF----ELTVNCNLFSYFRSND----HNDFFCKLF------- 400
            +   +GEI +RG  V   +    E T       +F S D    H D + ++        
Sbjct: 368 RDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDII 427

Query: 401 -----QVAPAELEGLLVSHPEILDAVVIP 424
                 ++  E+EG+L  HP +L+A V+ 
Sbjct: 428 ISGGENISSIEVEGVLYKHPAVLEAAVVA 456

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  107 bits (270), Expect = 1e-25
 Identities = 105/427 (24%), Positives = 173/427 (40%), Gaps = 91/427 (21%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F   K    +++++ R LG+ + D V ++ P S    I  L V  +GA++   + ++  
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
             +  +++DS  +++                                             
Sbjct: 68  DAVEHRLRDSGARVL--------------------------------------------- 82

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
                VTD  D      D A L+Y+SGTTG  KG +  H+  +     +  + EL     
Sbjct: 83  -----VTDGSD------DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPG 131

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPI 263
            V         + GL  +L   L  G  VV+  M +FD E A   + +Y VT  + +PP 
Sbjct: 132 DVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAF-LPPT 190

Query: 264 ILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 321
            L +     S   ++D+  L+ V SG   LG+EL+E  +  + G T+ + YG TE    +
Sbjct: 191 ALKMMRRVGSERARYDL-RLRAVASGGESLGEELLEWARDEL-GLTVNEFYGQTEANLVV 248

Query: 322 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------ 375
                 +G  R GS G  V G E  +V  D  +P+PP ++GEI V+ P+  PV       
Sbjct: 249 G-NCAALGPARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPD--PVMFLGYWN 304

Query: 376 --ELTVNCNLFSYFRSND--HNDFFCKL--------------FQVAPAELEGLLVSHPEI 417
             E T       +  + D    D    L              +++ PAE+E  L+ HP +
Sbjct: 305 NPEATAAKFAGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAV 364

Query: 418 LDAVVIP 424
           L+A V+ 
Sbjct: 365 LEAAVVG 371

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  108 bits (272), Expect = 1e-25
 Identities = 102/442 (23%), Positives = 165/442 (37%), Gaps = 98/442 (22%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
            G+ + D V ++ PN I + + FL    +GA     N  Y   E++  +     + ++  
Sbjct: 55  QGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLV-- 112

Query: 104 PELWDKVKDLNLPAVLLGSKDK----------VSSSG------LISRSSKIVSFHDLIEL 147
             +W   K ++  A+L                V  +             ++ +  D    
Sbjct: 113 --VWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPP 170

Query: 148 SGSVTDIPDVSVKQTDAAALLY-SSGTTGVSKGV------ILTHKNFIAASLMISAHQEL 200
           + +     D      DA ALL+ +SGTT   K V      +L H   IA +         
Sbjct: 171 AAAGERAADP-----DAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDP---- 221

Query: 201 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV 260
                 V+L  LP   VFG S +L   L  G  +V    FD     RA+ ++RVT     
Sbjct: 222 ----GAVLLAALPFCGVFGFSTLL-GALAGGAPLVCEPVFDAARTARALRRHRVT----- 271

Query: 261 PPIILALAKNSLVRKF--------DISSLKLVGSGA-APLGKELMED-CQKNIPGATIFQ 310
                    + ++R+         D  S +L G  + AP   EL      + +P   +  
Sbjct: 272 ----HTFGNDEMLRRILDTAGERADFPSARLFGFASFAPALGELAALARARGVPLTGL-- 325

Query: 311 GYGMTETCAPISLE--NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP--LPPNQLGEIWV 366
            YG +E  A ++L+     V VR  G  G   A  EA++ + D      LP  + GEI +
Sbjct: 326 -YGSSEVQALVALQPATDPVSVRIEG--GGRPASPEARVRARDPQDGALLPDGESGEIEI 382

Query: 367 RGPNVTPVF---------ELTVNCNLFSYFRSND-----HNDFF---CKL--------FQ 401
           R P++   +          LT +     YFR+ D      +  F    ++        F 
Sbjct: 383 RAPSLMRGYLDNPDATARALTDD----GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFL 438

Query: 402 VAPAELEGLLVSHPEILDAVVI 423
           V PAE+E  L + P +  A V+
Sbjct: 439 VNPAEIEHALEALPGVAAAQVV 460

Length = 540

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  108 bits (272), Expect = 1e-25
 Identities = 88/333 (26%), Positives = 146/333 (43%), Gaps = 17/333 (5%)

Query: 45  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 104
           GI   D V    P    F I +L  + +GA++    P +  +EL   +     K+    P
Sbjct: 70  GIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-P 128

Query: 105 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP----DVSVK 160
            L+ + + ++L   +L  ++++     I    K+      + LS  + D       ++  
Sbjct: 129 TLFKQTRPVDL---ILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTH 185

Query: 161 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 220
             + AA+L++SGT G+ KGV+LTH N +A+     A   L      V +   P+ H  G 
Sbjct: 186 GDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTW--QDVFMMPAPLGHATGF 243

Query: 221 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS 280
              +      G   V +  F  +  L  +E+ R T      P I  L      +  D+S+
Sbjct: 244 LHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSA 303

Query: 281 LKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC--APISLENPLVGVRRSGSAGT 338
           L+    G   + K++  +CQ+   G  +   YG TE+   A ++L++PL   R   + G 
Sbjct: 304 LRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPL--SRFMHTDGY 359

Query: 339 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
             AGVE ++V  +  K LPP   GE   RGPNV
Sbjct: 360 AAAGVEIKVVD-EARKTLPPGCEGEEASRGPNV 391

Length = 547

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  108 bits (271), Expect = 2e-25
 Identities = 97/351 (27%), Positives = 146/351 (41%), Gaps = 28/351 (7%)

Query: 33  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 92
           +V +V+     LG+ + DVV    PN   F + +L    IGA+ +   P++   ELS  +
Sbjct: 64  LVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFML 123

Query: 93  KDSNPKLVITVPELWDK------VKDLN--LPA----VLLGSKDKVSSSGLISRSSKIVS 140
           K +  K+++ VP+ +         + L   LPA    V++G     S   L+   +    
Sbjct: 124 KHAESKVLV-VPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWEQE 182

Query: 141 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL 200
                 L+      PD      D   L+Y+SGTTG  KGV+ T    +A  +  +    L
Sbjct: 183 PDAPAILARLRPG-PD------DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL 235

Query: 201 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV 260
               D V+L   PM H  G    L   +  G   V    +D   A   I    VT     
Sbjct: 236 GA--DDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMAS 293

Query: 261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            P +  L +        +SSL+      AP+   L+E  +    GA I   +GMTE  A 
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARA-ALGAKIVSAWGMTENGAV 352

Query: 321 --ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 369
               L++P    R S + G  + GVE ++V  D   PLP  Q+G + VRG 
Sbjct: 353 TLTKLDDPD--ERASTTDGCPLPGVEVRVVDAD-GAPLPAGQIGRLQVRGC 400

Length = 547

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  106 bits (267), Expect = 6e-25
 Identities = 107/439 (24%), Positives = 159/439 (36%), Gaps = 94/439 (21%)

Query: 40  SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 99
             R LGI   D VL+  PN   F I F  ++ +G     A P +  SEL          L
Sbjct: 69  GLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAAL 128

Query: 100 VIT--VPELWDK--------VKDLNLPAVLL-GSKDKVSSSGLISRSSKIVSFHDLIELS 148
           +I       +D          K   L  V++ G  +  S           V    L   +
Sbjct: 129 LIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPS-----------VLEAALCHPA 177

Query: 149 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH-- 206
           G  T  P     +   A    S GTTG  K +  TH ++  +   + A  E+ G  D   
Sbjct: 178 GLFTPAPPADAGEV--AFFQLSGGTTGTPKLIPRTHNDYYYS---VRASAEICG-FDQQT 231

Query: 207 VVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 265
           V LC LP  H F LS          G  VV       E+    IE++ VTV  +VPP+  
Sbjct: 232 VYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLAS 291

Query: 266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 325
              + +   + D+SSL+L+  G A L   L       + G  + Q +GM E         
Sbjct: 292 LWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEG-------- 342

Query: 326 PLVGVRRSGSAGTLVAGV---------EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFE 376
            LV   R      ++            E ++V  D   P+ P ++GE+  RGP       
Sbjct: 343 -LVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADG-NPVAPGEVGELLTRGP------- 393

Query: 377 LTVNCNLFSYFRSNDHND-------FFC-----KLFQ--------------------VAP 404
            T+      Y+R+ +HN        F+      +                       +A 
Sbjct: 394 YTIR----GYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAA 449

Query: 405 AELEGLLVSHPEILDAVVI 423
            E+E LL+ HP + DA ++
Sbjct: 450 EEVENLLLRHPAVHDAALV 468

Length = 542

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  105 bits (264), Expect = 1e-24
 Identities = 93/343 (27%), Positives = 142/343 (41%), Gaps = 30/343 (8%)

Query: 33  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 92
                +H+    G+ + D V +   N I F   FLG   +GAIA   N      +L   +
Sbjct: 55  AAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHIL 114

Query: 93  KDSNPKLVITVPELWDKVK-----DLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 147
           ++S  +L++    L   ++     DL LPAV L   D  +S  + +             L
Sbjct: 115 RNSGARLLVVEAALLAALEAADPGDLPLPAVWL--LDAPASVSVPAG-------WSTAPL 165

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHV 207
                  P  +V+  D AA+LY+SGTTG SKGV   H  F       SA    +G  D V
Sbjct: 166 PPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRN-SAEDLEIGA-DDV 223

Query: 208 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV---PPII 264
           +   LP+FH   L+   +  L  G   V   +F       A+ ++  TV +++     I+
Sbjct: 224 LYTTLPLFHTNALNA-FFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSIL 282

Query: 265 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 324
           L+       R   +  + L     A L     E       G  +  GYG TET   I++ 
Sbjct: 283 LSQPARESDRAHRV-RVALGPGVPAALHAAFRERF-----GVDLLDGYGSTETNFVIAVT 336

Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR 367
           +     +R GS G L  G EA++V     + LP  + GE+ +R
Sbjct: 337 HG---SQRPGSMGRLAPGFEARVVDEHD-QELPDGEPGELLLR 375

Length = 542

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  104 bits (263), Expect = 2e-24
 Identities = 105/355 (29%), Positives = 159/355 (44%), Gaps = 34/355 (9%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST------A 79
           ++   K +  K ++  + LG+ K D V IF P         LG +  GAI          
Sbjct: 75  TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFME 134

Query: 80  NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA---VLLGSKDKVSSSGLISRSS 136
             V        +++DS  K++IT P L ++    +LP+   VLL   + V          
Sbjct: 135 EAVRD------RLEDSEAKVLITTPALLERKPADDLPSLKHVLL-VGEDVEEGP------ 181

Query: 137 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 196
             + F+ L+E +    DI      + D A L Y+SG+TG  KGV+  H   +      + 
Sbjct: 182 GTLDFNALMEQASDEFDIEWT--DREDGAILHYTSGSTGKPKGVLHVHNAMLQH--YQTG 237

Query: 197 HQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 255
              L    D V  C      V G S  I    L     V+  G+F  E   R +E Y+VT
Sbjct: 238 KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVT 297

Query: 256 VWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
           VW+  P  I  L  A + LV+K+D+SSL+ + S   PL  E++    K + G  I   + 
Sbjct: 298 VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMK-VFGLPIHDNWW 356

Query: 314 MTETCAPISLEN-PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR 367
           MTET   I + N P + + + GS G  + G+EA IV  D    LPPN++G + ++
Sbjct: 357 MTETGG-IMIANYPAMDI-KPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIK 408

Length = 570

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  104 bits (261), Expect = 3e-24
 Identities = 83/362 (22%), Positives = 152/362 (41%), Gaps = 34/362 (9%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           SF        + +     LG+   D V +   N   F       + +GA A   N  +  
Sbjct: 13  SFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKP 72

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVSFH 142
            E++  ++DS  +++I   +L   +       +  + + +  +++++  IS +       
Sbjct: 73  EEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAG 132

Query: 143 DLIELSGSVTDIPDVSVKQTDA-AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
             I+  G +               +++Y+SGTTG  KGV    +   A +   +A  E +
Sbjct: 133 A-IDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGV----RRA-APTPEQAAAAEQM 186

Query: 202 GELDH------VVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK 251
             L +        L   P++H     +GL        + G  +V   +FD E  L+ IE+
Sbjct: 187 RALIYGLKPGIRALLTGPLYHSAPNAYGLRAG-----RLGGVLVLQPRFDPEELLQLIER 241

Query: 252 YRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GAT 307
           +R+T   +VP + + L K    +  K+D+SSL+ V   AAP   ++    +  I   G  
Sbjct: 242 HRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVK---RAMIEWWGPV 298

Query: 308 IFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR 367
           I++ YG TE+ A ++       +   G+ G    G E + V  D  +PLP  ++GEI+ R
Sbjct: 299 IYEYYGSTESGA-VTFATSEDALSHPGTVGKAAPGAELRFVDEDG-RPLPQGEIGEIYSR 356

Query: 368 GP 369
             
Sbjct: 357 IA 358

Length = 509

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  103 bits (260), Expect = 5e-24
 Identities = 107/444 (24%), Positives = 174/444 (39%), Gaps = 76/444 (17%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      + + ++ F  LGI K D V +   N   F  C+ G+  IGAI    N     
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRS-----SKIVS 140
            E +  +++S   L++T  +         +   +            ++R        + S
Sbjct: 99  EESAWILQNSQASLLVTSAQF------YPMYRQIQQEDATPLRHICLTRVALPADDGVSS 152

Query: 141 FHDLI-ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
           F  L  +   ++   P +S    D A +L++SGTT   KGV++TH N   A    SA Q 
Sbjct: 153 FTQLKAQQPATLCYAPPLSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYY-SAWQC 209

Query: 200 LVGELDHVVLCVLPMFHV-FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
            + + D V L V+P FH+    +  +      G   V + K+        + KYR T+  
Sbjct: 210 ALRD-DDVYLTVMPAFHIDCQCTAAM-AAFSAGATFVLLEKYSARAFWGQVCKYRATITE 267

Query: 259 VVPPIILALA--------KNSLVRKF----DISSLKLVGSGAAPLGKELMEDCQKNIPGA 306
            +P +I  L         +   +R+     ++S             +E     ++   G 
Sbjct: 268 CIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSD------------QEKDAFEERF--GV 313

Query: 307 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 366
            +   YGMTET   I  + P    RR  S G      EA+I      +PLP  ++GEI +
Sbjct: 314 RLLTSYGMTETIVGIIGDRP-GDKRRWPSIGRPGFCYEAEIRDDHN-RPLPAGEIGEICI 371

Query: 367 RG-PNVTPVFE-----------LTVNCNLFS----YFRSNDHNDFF------CKLFQ--- 401
           +G P  T   E           L  +  L +    Y    D   FF      C + +   
Sbjct: 372 KGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGY---VDEEGFFYFVDRRCNMIKRGG 428

Query: 402 --VAPAELEGLLVSHPEILDAVVI 423
             V+  ELE ++ +HP+I D VV+
Sbjct: 429 ENVSCVELENIIATHPKIQDIVVV 452

Length = 517

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  101 bits (254), Expect = 1e-23
 Identities = 94/430 (21%), Positives = 144/430 (33%), Gaps = 100/430 (23%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F+  K    + ++  + LG+ + D V +  P         LG I +GA+     P  T 
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFI---PGTT- 57

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
                                             LG KD             I    +  
Sbjct: 58  ---------------------------------QLGPKD-------------IRYRLERA 71

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
                VT          D A L ++SGTTG+ K V+ TH   +   +  +   +L    D
Sbjct: 72  GARAIVTS-------ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDL--RPD 122

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPI 263
            +   +       G    L+     G  V      +FD E  L  +E+Y VT +   P  
Sbjct: 123 DLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTA 182

Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
              L +  L   +D S L+ V S   PL  E+++  +    G  I  GYG TET      
Sbjct: 183 YRMLLQQDL-SSYDFSHLRHVVSAGEPLNPEVIDWWRAAT-GLPIRDGYGQTETGL---- 236

Query: 324 ENPLVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--- 375
              LV        + GS G    G    I+  +    LPP + G+I VR     P     
Sbjct: 237 ---LVANFPGMEVKPGSMGRPAPGYRVAIIDDEG-NELPPGEEGDIAVRVKPRPPGLFRG 292

Query: 376 -----ELTVNCNLFSYFRSND--------------HNDFFCKL--FQVAPAELEGLLVSH 414
                E T       ++ + D                D   K   +++ P E+E  L+ H
Sbjct: 293 YLKDPEKTEATIRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEH 352

Query: 415 PEILDAVVIP 424
           P + +A V+ 
Sbjct: 353 PAVAEAAVVG 362

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  102 bits (256), Expect = 1e-23
 Identities = 114/458 (24%), Positives = 176/458 (38%), Gaps = 78/458 (17%)

Query: 13  RSLRPPLVLPSDP---SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 69
              +P +++ S     ++        +++H FR LG+ + D V IF  N++ +       
Sbjct: 10  TPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAA 69

Query: 70  IAIGAIASTANPVYTVSELSKQVKDSNPKLVIT-------VPELWDKVKDLNLPAVLLGS 122
              G   +  N   T +E +  V DS  + +IT          L  +   +    VL G 
Sbjct: 70  ERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGD 129

Query: 123 KDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI- 181
            +              V + + +      T I D    ++    +LYSSGTTG  KG+  
Sbjct: 130 GE----------LEGFVGYAEAVA-GLPATPIAD----ESLGTDMLYSSGTTGRPKGIKR 174

Query: 182 -LTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 239
            L  +       + +  Q L G   D V L   P++H      ++    + G  V+ M  
Sbjct: 175 PLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEH 233

Query: 240 FDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVR-KFDISSLKLVGSGAAPLG--- 292
           FD E  L  IE+Y VT   +VP +   +L L +   VR K+D+SSL++    AAP     
Sbjct: 234 FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEE--VRDKYDLSSLEVAIHAAAPCPPQV 291

Query: 293 KELMEDCQKNIPGATIFQGYGMTE---TCAPIS---LENPLVGVRRSGSAGTLVAGVEAQ 346
           KE M D      G  I + Y  TE     A  S   L +P       G+ G  + G    
Sbjct: 292 KEQMIDWW----GPIIHEYYAATEGLGFTACDSEEWLAHP-------GTVGRAMFGD-LH 339

Query: 347 IVSVDTLKPLPPNQLGEIWVRG---------PNVT-----PVFELT-------VNCNLFS 385
           I+  D    LPP + G IW  G         P  T     P    +       V+ + + 
Sbjct: 340 ILD-DDGAELPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYL 398

Query: 386 YFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVI 423
           Y               + P E E LL++HP++ DA V 
Sbjct: 399 YLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVF 436

Length = 511

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 99.6 bits (249), Expect = 1e-22
 Identities = 76/259 (29%), Positives = 109/259 (42%), Gaps = 46/259 (17%)

Query: 145 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL---- 200
           +   G+    P   +   D AA+L++SG+TG  KGV+ TH  F A    I A +E     
Sbjct: 157 LLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEA---QIEALREDYGIE 213

Query: 201 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SM-----GKFDIEMALRAIEKYR 253
            GE+D   L   P+F +FG ++        G   V   M        D      AIE+Y 
Sbjct: 214 PGEID---LPTFPLFALFGPAL--------GMTSVIPDMDPTRPATVDPAKLFAAIERYG 262

Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQGY 312
           VT  +  P ++  L +        + SL+ V S  AP+   ++E  +  +P  A I   Y
Sbjct: 263 VTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPY 322

Query: 313 GMTETCAPIS---LENPLVGVR---RSGSAGTLV----AGVEAQIVSVDT--------LK 354
           G TE   PIS       L   R    +G AG  V     GVE +I+++            
Sbjct: 323 GATE-ALPISSIESREILFATRAATDNG-AGICVGRPVDGVEVRIIAISDAPIPEWDDAL 380

Query: 355 PLPPNQLGEIWVRGPNVTP 373
            L   ++GEI V GP VT 
Sbjct: 381 RLATGEIGEIVVAGPMVTR 399

Length = 552

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 97.3 bits (243), Expect = 6e-22
 Identities = 106/450 (23%), Positives = 179/450 (39%), Gaps = 115/450 (25%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT--VSELSKQVKDSNPKL 99
           + LG+   D + I + N   + I  L +   G ++    P+Y    +E  + V + +   
Sbjct: 24  QSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSV---PLYPTLTAETIRYVLEHSDAK 80

Query: 100 VITVPEL--WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS-------FHDLIE---- 146
            + V +L  WD +K   +P             GL +      S       + DL+     
Sbjct: 81  ALFVGKLDDWDAMKAG-VPE------------GLPTIILFPYSTLKDHYKWDDLLAATEP 127

Query: 147 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH 206
           L G     P+      D A ++Y+SGTTG  KGV+L+   F  A+        L      
Sbjct: 128 LQGRPLPEPE------DLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPN--D 179

Query: 207 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVP- 261
            +L  LP+ H+    ++      +G  + S  +      ++     +++ R TV++ VP 
Sbjct: 180 RLLSYLPLAHIAERVIV------EGGSLYSGAEVFFVESLDTFAADLQRARPTVFFSVPR 233

Query: 262 ------------------------PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 297
                                   PI+ +L K  +++   +   +L GSGAAP+   L+ 
Sbjct: 234 LWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALI- 292

Query: 298 DCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 357
              + + G  I +GYGMTE  A  +L  P  G RR G+ G  + GVE +I          
Sbjct: 293 AWYRKL-GLPICEGYGMTENFAYSTLNYP--GDRRIGTVGKPIPGVELKI---------- 339

Query: 358 PNQLGEIWVRGPNVTPVF----ELTVNCNLFS---YFRSND----HNDFFCKL------- 399
            ++ GEI +R P +   +    E T     F+   +  + D      D F K+       
Sbjct: 340 -SEDGEILIRSPGLMSGYYKDPEKTA--EAFTEDGWLHTGDKGEIDEDGFLKITGRVKEL 396

Query: 400 FQ------VAPAELEGLLVSHPEILDAVVI 423
           F+      VAPA +E LL ++P +    V+
Sbjct: 397 FKTSKGKYVAPAPIENLLSANPHVEQVCVV 426

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.0 bits (237), Expect = 3e-21
 Identities = 97/437 (22%), Positives = 158/437 (36%), Gaps = 107/437 (24%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++  K    +++     LG    D V ++   S       L  +  GA        Y  
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGA-------AY-- 68

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
                            VP       D + PA                R +KI+   +  
Sbjct: 69  -----------------VP------LDPSQPA---------------ERIAKIL---EAA 87

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGEL 204
             +  V D         D A +L++SG+TG  KGV ++H N  +    M+      + E 
Sbjct: 88  GPAALVAD-------PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFD--LTEG 138

Query: 205 DHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMAL---RAIEKYRVTVWWVV 260
           D V     P F  F LSV  L+  L  G  +  + K  I   L     ++++ +TVW  V
Sbjct: 139 D-VFSNQAP-FS-FDLSVFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSV 195

Query: 261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC-- 318
           P     L  +  +    + SL+        L K+L +  ++  P A I   YG TE    
Sbjct: 196 PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVA 255

Query: 319 -------APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                        N  + +      G    G+ A I+  D  +P+PP + GE+ + GP V
Sbjct: 256 VTAYEVTPEPLSRNEPLPI------GYPKPGLRALILDED-GRPVPPGEEGELVIAGPQV 308

Query: 372 TPVF----ELTVNCNLFS----YFRSND--------------HNDFFCKL--FQVAPAEL 407
           +P +    E T           ++R+ D                DF  KL  +++   E+
Sbjct: 309 SPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEI 368

Query: 408 EGLLVSHPEILDAVVIP 424
           E  L + P + +AVV+P
Sbjct: 369 EAALRALPGVEEAVVLP 385

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 103/429 (24%), Positives = 167/429 (38%), Gaps = 87/429 (20%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+   K +  + ++    LG+ K + V    P S    +  LG + +GA+       +  
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
             +  +++    K++IT PEL+++                                    
Sbjct: 62  EPIRDRLELGEAKVLITTPELYER------------------------------------ 85

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
                 TD P+      D A L ++SGTTG  KGV+  H+  +A     +A   L    D
Sbjct: 86  ------TD-PE------DPALLHFTSGTTGKPKGVLHVHRAVVAHY--ATARYVLDLRPD 130

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
            V  C      V G S  +   L  G   VV  G+FD E     +E+ +VTVW+  P  +
Sbjct: 131 DVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTAL 190

Query: 265 LALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS 322
             L +    L  ++D+SSL+ + S   PL  E++   +K + G  I   +  TET A I 
Sbjct: 191 RMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVL-GMPIHDTWWQTETGA-IM 248

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVD---TLKPLPPNQLGEIWVRGPNVTPVFELTV 379
           + N      + GS G  + G+EA ++  D         P Q+GE+ ++ P    +F   +
Sbjct: 249 IANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALK-PGWPSMFRGYL 307

Query: 380 N--CNLFSYFRSN----------DHNDFFCKLFQ-------------VAPAELEGLLVSH 414
                  S F             D + +F   F              V P E+E  L+ H
Sbjct: 308 GNEERYASSFVDGWYLTGDLAYRDEDGYF--WFVGRADDVIKTAGHLVGPFEVESALMEH 365

Query: 415 PEILDAVVI 423
           P + +A VI
Sbjct: 366 PAVAEAGVI 374

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 94.5 bits (235), Expect = 7e-21
 Identities = 107/423 (25%), Positives = 183/423 (43%), Gaps = 39/423 (9%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+   ++ V ++  + R LG+ +++ VL+   + + FPI FLG I  G +    N + T 
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            + +  ++DS  ++V    EL   +K        LG    +     +           L 
Sbjct: 92  DDYAYMLEDSRARVVFVSGELLPVIKA------ALGKSPHLEH--RVVVGRPEAGEVQLA 143

Query: 146 ELSGSVTDIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 204
           EL  + ++    +  Q D  A  LYSSG+TG+ KGV+ TH N    +  + A   L    
Sbjct: 144 ELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA-ELYARNTLGIRE 202

Query: 205 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPI 263
           D VV     +F  +GL   L   +  G   V MG+     A+   + +++ T+++ VP +
Sbjct: 203 DDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTL 262

Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
             A+  +  +   D   L+L  S    L  E+ +  Q    G  I  G G TE    I L
Sbjct: 263 YAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEM-LHIFL 320

Query: 324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN------------- 370
            N L G  R G++G  V G   ++V  D  + +   + GE+ + GP+             
Sbjct: 321 SN-LPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTR 378

Query: 371 VTPVFELTVNCNLFSYFRSNDHNDFFC----KLFQ-----VAPAELEGLLVSHPEILDAV 421
            T   E T + +   Y R++D +  +      + +     V+P E+E  L+ HP +L+A 
Sbjct: 379 DTFQGEWTRSGD--KYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAA 436

Query: 422 VIP 424
           V+ 
Sbjct: 437 VVG 439

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 94.3 bits (235), Expect = 7e-21
 Identities = 88/360 (24%), Positives = 154/360 (42%), Gaps = 31/360 (8%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPVYT 84
           ++    + V  ++ +    G+ K D +L+ + N    F   F     +GA+    N   T
Sbjct: 34  TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF-AAFRLGAVWVPTNFRQT 92

Query: 85  VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 144
             E++   + S  + +I   +  +        AV   S D ++    I  +   + +  L
Sbjct: 93  PDEVAYLAEASGARAMICHADFPEHAA-----AVRAASPD-LTHVVAIGGARAGLDYEAL 146

Query: 145 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QELVGE 203
           +        + + +V   D     ++SGTTG  K  +LTH      + +I+ H  +L+  
Sbjct: 147 VA-RHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQM---AFVITNHLADLMPG 202

Query: 204 LDH--VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWV 259
                  L V P+ H  G+  +   Q+ +G   V +   +FD       +E++RVT  + 
Sbjct: 203 TTEQDASLVVAPLSHGAGIHQLC--QVARGAATVLLPSERFDPAEVWALVERHRVTNLFT 260

Query: 260 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GATIFQGYGMTE- 316
           VP I+  L ++  V ++D SSL+ V    AP+      D ++ +   G  + Q +G+ E 
Sbjct: 261 VPTILKMLVEHPAVDRYDHSSLRYVIYAGAPM---YRADQKRALAKLGKVLVQYFGLGEV 317

Query: 317 ----TCAPISLENPLVGVR-RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
               T  P +L +   G   R G+ G    G+E QI   D  + LPP + GEI V GP V
Sbjct: 318 TGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAV 376

Length = 528

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 93.1 bits (231), Expect = 2e-20
 Identities = 79/352 (22%), Positives = 143/352 (40%), Gaps = 18/352 (5%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V +++     LG+ + DVV    PN   F   +L    IGA+ +   P++  
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SGLISRSSKIVSFHD 143
            ELS  +  ++ K+ + VP ++      +  A+    + K+ +    ++       SF  
Sbjct: 115 RELSFMLNHADSKVFV-VPSVFRG---FDHAAMARELQSKLPALRQVVVIDGDGDDSFDR 170

Query: 144 LIELSGSVTDIPDVSVKQ------TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH 197
           ++            ++         D   L+Y+SGTTG  KGV+ T  N + +++   A 
Sbjct: 171 VLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHT-ANTLFSNIHPYAE 229

Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
           +  +G  D V+L   PM H  G    L   L      V    ++   A   I +  VT  
Sbjct: 230 RLELGGGD-VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFT 288

Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET 317
               P +  L +        + SL       AP+   L+E   + + GA I   +GMTE 
Sbjct: 289 MASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTE- 346

Query: 318 CAPISLENPLVGVRRSG-SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
              +++  P   + ++  + G  + GVE +++  +    L   + G + VRG
Sbjct: 347 NGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANG-AKLSQGETGRLLVRG 397

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 99/409 (24%), Positives = 151/409 (36%), Gaps = 93/409 (22%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 101
           R LG++  D VL+  P+S      FL       + + A  V             NP L  
Sbjct: 28  RALGVSPGDRVLLLLPDSPELVAAFL-----ACLKAGAVAVAL-----------NPLL-- 69

Query: 102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ 161
           T  +L   + D     +                                VT+  D     
Sbjct: 70  TPQDLEHILDDSGAALL--------------------------------VTE-AD----- 91

Query: 162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL-----DHVVLCVLPMFH 216
            D A  LY+SGTTG  KGV+  H++       ++  +    EL        +     +F 
Sbjct: 92  -DIAYWLYTSGTTGKPKGVMHRHRD------PLTFAEAFARELLGLQPGDRIFSSSKLFF 144

Query: 217 VFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 275
            +GL   L   L  G   V + G    E  L  + ++R TV + VP +  AL ++     
Sbjct: 145 AYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGAGSA 204

Query: 276 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS 335
               S++L  S    L   L E       G  I  G G TE    I + N   G  R G+
Sbjct: 205 PLFRSVRLCVSAGEALPAGLAERW-AEATGIEILDGIGSTEV-LHIFISNR-PGAARPGT 261

Query: 336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNCNLFSYFRSND 391
            G  V G EA++V  ++ + +P   +G++WVRGP++ P +    E T       + R+ D
Sbjct: 262 TGRPVPGYEARLVD-ESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGD 320

Query: 392 ---------------HNDFFCKLFQ-VAPAELEGLLVSHPEILDAVVIP 424
                           +D      Q V+P E+E  L  HP + +A V+ 
Sbjct: 321 RFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVA 369

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 92.2 bits (229), Expect = 3e-20
 Identities = 96/414 (23%), Positives = 168/414 (40%), Gaps = 70/414 (16%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 101
           R  G    + + + A NS+           +GAI    N   + SEL   ++D+ P+L  
Sbjct: 40  RRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRL-- 97

Query: 102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ 161
                            LLG  D V++         +      I  + ++      S+  
Sbjct: 98  -----------------LLGD-DAVAAGRTD-----VEDLAAFIASADALEPADTPSIPP 134

Query: 162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFG 219
              + +L++SGT+G  KGV+L+ +N    +        ++G +D     LC  PMFH+ G
Sbjct: 135 ERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFG----VLGRVDAHSSFLCDAPMFHIIG 190

Query: 220 LSVILYDQL-QKGNCVVSMGKFDIEMALR--AIEKYRVTVWWVVPPIILALAKNSLVRKF 276
           L   +   L   G+ +VS G F+ +  L         +T ++ VP +  A         F
Sbjct: 191 LITSVRPVLAVGGSILVSNG-FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQP---GF 246

Query: 277 DISSLK----LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE--TCAPISLENPLVGV 330
           D ++L+    L   GA    ++++      IP   +  G+GM+E  T   +S++  ++  
Sbjct: 247 DAAALRHLTALFTGGAPHAAEDILGWLDDGIP---MVDGFGMSEAGTVFGMSVDCDVIR- 302

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-----ELTVNCNLFS 385
            ++G+AG     V+ ++V  D     P    GE+ +RGPN++P +               
Sbjct: 303 AKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 386 YFRSND---------------HNDFFCKLFQ-VAPAELEGLLVSHPEILDAVVI 423
           +FR+ D                 D F    + V PAE+E +L  HP I +  V+
Sbjct: 362 WFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVV 415

Length = 488

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 101/364 (27%), Positives = 160/364 (43%), Gaps = 39/364 (10%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V +++   R LG+ K D V+I+ P      I  L    IGAI S     +   EL+ ++ 
Sbjct: 83  VSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFASKELASRID 142

Query: 94  DSNPKLVIT----------VP--ELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKI 138
           D+ PKL++T          VP   L DK  +L+      VL+ ++ +V +     R    
Sbjct: 143 DAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILNRGQVPAPLKPGRD--- 199

Query: 139 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
           + + +L+  +  V     V V+ TD   +LY+SGTTG  KGV+     + A +L  S   
Sbjct: 200 LDWAELMAKARPV---DCVPVESTDPLYILYTSGTTGKPKGVVRDTGGY-AVALKWSMRN 255

Query: 199 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKF----DIEMALRAIEKYR 253
               +   V      +  V G S I+Y  L  G   V+  GK     D     R IE+Y 
Sbjct: 256 IYGIKPGDVFWAASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYG 315

Query: 254 VTVWWVVPPIILALAKN----SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 309
           V   +  P  I A+ K       ++K+D+SSL+ +      L    +E   +   G  + 
Sbjct: 316 VNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLE-WIEKTLGVPVI 374

Query: 310 QGYGMTETCAPISLENPLVGVR----RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 365
             +  TET  PI+     VG+     + GS G  V G + Q++  +T + L P +LG I 
Sbjct: 375 DHWWQTETGWPIT--ANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEELGPGELGNIV 431

Query: 366 VRGP 369
           ++ P
Sbjct: 432 IKLP 435

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 91.5 bits (228), Expect = 7e-20
 Identities = 110/427 (25%), Positives = 161/427 (37%), Gaps = 72/427 (16%)

Query: 37  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 96
           ++     LG+   D V + A N   F +       +GA     N  ++  +L++      
Sbjct: 87  LARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREG 146

Query: 97  PKLVITVPELWDKVKDL--NLP--AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 152
            K ++   E  D +  L  +L       G+ D    SG     S   +  DLI   GS T
Sbjct: 147 VKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSG-----STDETLDDLIA--GSST 199

Query: 153 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHV----- 207
                  K      ++ +SGTTG  KG               S    L G L  V     
Sbjct: 200 APLPKPPKP--GGIVILTSGTTGTPKGAPRPE---------PSPLAPLAGLLSRVPFRAG 248

Query: 208 --VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI-- 263
              L   PMFH  G + +    +  G+ VV   +FD E  L  I K++ T   VVP +  
Sbjct: 249 ETTLLPAPMFHATGWAHLTL-AMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLS 307

Query: 264 -ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS 322
            IL L    L  K+D SSLK++    + L  EL     +   G  ++  YG TE  A  +
Sbjct: 308 RILDLGPEVLA-KYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTE-VAFAT 364

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCN 382
           +  P       G+ G    GV  +I+  +    +P   +G I+V   N  P FE   +  
Sbjct: 365 IATPEDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVG--NGFP-FEGYTDGR 420

Query: 383 -------LFS-----YFRSNDHNDFFCKLF--------------QVAPAELEGLLVSHPE 416
                  L S     YF  +        LF               V PAE+E LL  HP+
Sbjct: 421 DKQIIDGLLSSGDVGYFDEDG------LLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPD 474

Query: 417 ILDAVVI 423
           +++A VI
Sbjct: 475 VVEAAVI 481

Length = 549

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 98/417 (23%), Positives = 169/417 (40%), Gaps = 58/417 (13%)

Query: 45  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 104
           G+   D V +   ++  F +  L       +    +P   ++E   + + +  ++V+   
Sbjct: 64  GLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDA 123

Query: 105 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ--- 161
              D   D   P         V+  G    S   +S H    L  +    P  S  +   
Sbjct: 124 ---DGPHDRAEPTTRWWPL-TVNVGGDSGPSGGTLSVH----LDAATEPTPATSTPEGLR 175

Query: 162 TDAAALLYSSGTTGVSKGVILTHKNFIAASL--MISAHQELVGELDHVVLCVLPMFHVFG 219
            D A ++++ GTTG+ K V  TH N IA+S+  +I+ ++  +   D  V  V+P++H  G
Sbjct: 176 PDDAMIMFTGGTTGLPKMVPWTHAN-IASSVRAIITGYR--LSPRDATV-AVMPLYHGHG 231

Query: 220 LSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVR 274
           L   L   L  G  V+  + G+F        I+    T +  VP I   +L  A      
Sbjct: 232 LIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSG 291

Query: 275 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL---------EN 325
           +   ++L+ + S +APL  E  +  Q     A +   +GMTE    ++          EN
Sbjct: 292 R-KPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTEN 349

Query: 326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNC 381
           P+V     G +     G + +IV  D L PLP   +GE+W+RG  V   +     +T   
Sbjct: 350 PVVSTGLVGRST----GAQIRIVGSDGL-PLPAGAVGEVWLRGTTVVRGYLGDPTITAAN 404

Query: 382 NLFSYFRSNDHNDF-----------FCKLF-----QVAPAELEGLLVSHPEILDAVV 422
               + R+ D                 +L      +++P  +EG+L SHP +++A V
Sbjct: 405 FTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAV 461

Length = 534

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 88.7 bits (221), Expect = 4e-19
 Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 45/298 (15%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
           D A ++Y+SG+TG  KGV++ H+     +L+    +         VL        F  SV
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGL--VNLLAWLQERYGLTAGDRVLQFAS--FSFDASV 149

Query: 223 I-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 278
             ++  L  G  +V        D E     + ++R+TV  +VP ++ AL     +    +
Sbjct: 150 WEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLD--ALEPAAL 207

Query: 279 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA-- 336
            SL+LV  G   L  EL+   ++  PGA +   YG TET   ++           GS   
Sbjct: 208 PSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPI 267

Query: 337 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFELTVNC---NLFS-- 385
           G  +A     ++  + L+P+P    GE+++ G  V       P  ELT      + F   
Sbjct: 268 GRPIANTRVYVLD-EDLRPVPVGVPGELYIGGAGVARGYLNRP--ELTAERFVPDPFGGP 324

Query: 386 ---YFRSND--------------HNDFFCKL--FQVAPAELEGLLVSHPEILDAVVIP 424
               +R+ D                D   K+  +++   E+E  L++HP + +AVV+ 
Sbjct: 325 GERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVA 382

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 87.3 bits (217), Expect = 1e-18
 Identities = 92/403 (22%), Positives = 142/403 (35%), Gaps = 106/403 (26%)

Query: 36  KVSHSFRHLGITKKD-VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 94
           ++    R LG+   D V+L    N   F   F   +  G +        T  E +  V  
Sbjct: 51  RILAGLRALGLKPGDSVILQLERNE-DFVTAFWACVLGGFVPVPVAVPPTYDEPNAAVA- 108

Query: 95  SNPKL-----------VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 143
              KL           ++T   L   +  L   A                   + +    
Sbjct: 109 ---KLRNIWELLGSPVILTDAALVAALAGLRTRA-----------------GLEALRVLA 148

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
           + EL  +  D P    +  D A LL +SG+TGV K V+LTH+N +A S           +
Sbjct: 149 IEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPD 208

Query: 204 --------LDHVVLCVLPMFHVFGLSV-----------ILYDQLQKGNCVVSMGKFDIEM 244
                   LDHV    + M H+  + +           IL D L+               
Sbjct: 209 DVSLNWMPLDHVG--GIVMLHLRDVYLGCQQIHVPTDYILADPLR--------------- 251

Query: 245 ALRAIEKYRVTVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGA----APLGKELM 296
            L  I++YRVT+ W  P    AL  ++L     R +D+SSL+ + +      A   +  +
Sbjct: 252 WLDLIDRYRVTITW-APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFL 310

Query: 297 EDCQK-NIPGATIFQGYGMTETCAPISLENPLV------GVRRSGSAGTL---------- 339
           E      +P   I   +GM+ETC+ ++            GV      G L          
Sbjct: 311 ELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEA 370

Query: 340 ---------VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
                    + GV  +IV  +    LP  ++G + VRGP VT 
Sbjct: 371 VTFVELGRPIPGVAIRIVD-EDGALLPEGEVGRLQVRGPTVTS 412

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 87.2 bits (217), Expect = 2e-18
 Identities = 72/310 (23%), Positives = 114/310 (36%), Gaps = 43/310 (13%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +++H     G+   D V I+A N I +    LG     A+    N  Y   EL   + DS
Sbjct: 40  RLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDS 99

Query: 96  NPKLVITVPELWDKVKDL--NLPAVLL------GSKDKVSSSGLISRSSKIVSFHDLIEL 147
           +   ++   E   +V ++   LP +        GS + +            V + D +  
Sbjct: 100 DAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGA--------VDYEDALAA 151

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL---------MISAHQ 198
                D  + S    D   LLY+ GTTG+ KGV+   ++     L          I   +
Sbjct: 152 GSPERDFGERS---PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEE 208

Query: 199 ELVGELDH----VVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKY 252
           EL                P+ H  G        L  G  VV     +FD +   R IE+ 
Sbjct: 209 ELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAA-LFSGQTVVLLPDVRFDADEVWRTIERE 267

Query: 253 RVTVWWVV-----PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 307
           +V V  +V      P++ AL        +D+SSL  + SG A     + E   + +P   
Sbjct: 268 KVNVITIVGDAMARPLLDALEAR---GPYDLSSLFAIASGGALFSPSVKEALLELLPNVV 324

Query: 308 IFQGYGMTET 317
           +    G +ET
Sbjct: 325 LTDSIGSSET 334

Length = 533

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 87.2 bits (216), Expect = 2e-18
 Identities = 90/431 (20%), Positives = 150/431 (34%), Gaps = 80/431 (18%)

Query: 40  SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 99
               LGI + D  ++  PN   F I F  ++ +G     A   +  SEL+       P L
Sbjct: 64  GLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPAL 123

Query: 100 VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV 159
            I    +       +        + K+ +   I  + +       + L      +     
Sbjct: 124 YI----IDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPT 179

Query: 160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHV 217
           K  + A    S G+TG  K +  TH ++   S+  S     +  L      LC LP  H 
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYY-SVRRSVE---ICWLTQQTRYLCALPAAHN 235

Query: 218 FGLSV-----ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
           + LS      + Y     G CVV             IE+++VTV  +VPP +    + + 
Sbjct: 236 YPLSSPGALGVFY----AGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAAS 291

Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR 332
             + D+SSLKL+  G A               G  + Q +GM E          LV   R
Sbjct: 292 KSRADLSSLKLLQVGGAKFSAAAARRVPAVF-GCQLQQVFGMAEG---------LVNYTR 341

Query: 333 SGSAGTLVAGVEAQIVSVDTL--------KPLPPNQLGEIWVRGPNVTPVFELTVNCNLF 384
                 ++   + + +S D           P+ P + G +  RGP               
Sbjct: 342 LDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPY-----------TFR 390

Query: 385 SYFRSNDHN-------DFFC-----KLF--------------------QVAPAELEGLLV 412
            Y+++ +HN        F+      +L                     ++A  E+E LL+
Sbjct: 391 GYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL 450

Query: 413 SHPEILDAVVI 423
           +HP + DA ++
Sbjct: 451 AHPAVHDAALV 461

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 87.3 bits (216), Expect = 2e-18
 Identities = 76/340 (22%), Positives = 131/340 (38%), Gaps = 32/340 (9%)

Query: 37  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 96
           ++     LG+   + V I A  S+   +  L V+  GA     +P+Y    L+  ++DS 
Sbjct: 265 LARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSR 324

Query: 97  PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 156
           P L++T   L   V D+ LP + L                      D        TD   
Sbjct: 325 PTLLLTQAHLR--VDDVGLPGLAL----------------------DDALSEIPDTDPIP 360

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF- 215
            ++     A ++Y+SG+TG  KGV + H+  +A  L  +  +  +   D V+      F 
Sbjct: 361 QALLGDALAYIIYTSGSTGQPKGVRIEHRA-LANLLNDAGARFGLDADDRVLALASLSFD 419

Query: 216 -HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSL 272
             VF +   L +   +     ++ + D    L  +E   +TV  +VP ++  L LA  + 
Sbjct: 420 ASVFEIFGALLEG-ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAP 478

Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA-TIFQGYGMTETCAPISLENPLVGVR 331
                   L+ + SG   L   L++   +    A  +   YG TE             + 
Sbjct: 479 DLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE 538

Query: 332 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                G  VA  +  I+    L+PLP    GE+++ G  +
Sbjct: 539 SRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGL 577

Length = 642

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 86.0 bits (213), Expect = 4e-18
 Identities = 96/403 (23%), Positives = 155/403 (38%), Gaps = 87/403 (21%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
           LG+   + VL+ + N+     C+L V+  GAI  T  P+    EL+  V           
Sbjct: 81  LGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAKELTTIV----------- 129

Query: 104 PELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTD 163
                              K +++              H L +   +  D         D
Sbjct: 130 ------------------DKARIT--------------HALCDKRLTAAD---------D 148

Query: 164 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI 223
            A + ++SGTTG+ KG +  H++ +A       H       D V +   P+   FGL  +
Sbjct: 149 VALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTP-DDVFIGSPPLAFTFGLGGL 207

Query: 224 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKL 283
           +   L+ G   V + +    + L+AI+++R T+ +  P    A+     V+ FDISSL+ 
Sbjct: 208 VLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLI--KVKAFDISSLRK 265

Query: 284 VGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP-ISLENPLVGVRRSGSAGTLVAG 342
             S    L  ++ +D      G  I  G G TE     IS         + G+ G  V G
Sbjct: 266 CVSAGETLPAKVWQD-WYERTGLKIIDGIGATEMLHIFISANEE---NAKPGATGKPVPG 321

Query: 343 VEAQIVSVDTLKPLPPNQLGEIWVRGP-------------------NVT-PVFELTVNCN 382
            EA+IV  D    +P  + G + VRGP                   NVT  +F    +  
Sbjct: 322 YEARIVD-DQGNEVPRGEAGRLAVRGPTGCRYLDDERQQEYVRDGWNVTGDIFRQDED-- 378

Query: 383 LFSYFRSNDHND--FFCKLFQVAPAELEGLLVSHPEILDAVVI 423
              YF     +D       + +A  E+E  L++HP++ +  VI
Sbjct: 379 --GYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVI 419

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 85.0 bits (211), Expect = 7e-18
 Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 15/214 (7%)

Query: 163 DAAAL-LYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLCVLPMFHVFGL 220
           DA AL +Y+SGTTG  KGV+L+ +  IAA L  ++   +     D V++  LP+FHV GL
Sbjct: 128 DAPALIVYTSGTTGPPKGVVLS-RRAIAADLDALAEAWQWTA--DDVLVHGLPLFHVHGL 184

Query: 221 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVRKFDIS 279
            + +   L+ GN  V  G+   E   +A+ +   T+++ VP +   +A +    R     
Sbjct: 185 VLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADPEAARAL--R 241

Query: 280 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL 339
             +L+ SG+A L   + +     + G    + YGMTET   I+L     G RR G  G  
Sbjct: 242 GARLLVSGSAALPVPVFDRLAA-LTGHRPVERYGMTETL--ITLSTRADGERRPGWVGLP 298

Query: 340 VAGVEAQIVSVDTLKPLP--PNQLGEIWVRGPNV 371
           +AGVE ++V  +   P+P     +GE+ VRGP +
Sbjct: 299 LAGVETRLVD-EDGGPVPHDGETVGELQVRGPTL 331

Length = 471

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 16/221 (7%)

Query: 158 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIA---ASLMISAHQELVGELDHVVLCVLPM 214
                D A +L++SGT  + KGV LTH N +A   A L   + +E     D V++  LP 
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKE-----DDVMMSFLPP 233

Query: 215 FHVFGLSVILYDQLQKGNCVV-SMGKFDIEMALRAIEKYRVTVWWVVP---PIILALAKN 270
           FH +G +      L  G  VV +      +  +  I++ +VT     P     IL  AK 
Sbjct: 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK 293

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 330
               +  + SL+ V  G       L ++  K  P   + QGYG TE C+P+   N +   
Sbjct: 294 Q---ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITINTVNSP 349

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           +     G  + G++  IVS +T  P+   + G +  RG ++
Sbjct: 350 KHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSL 390

Length = 539

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 82.7 bits (205), Expect = 6e-17
 Identities = 95/364 (26%), Positives = 156/364 (42%), Gaps = 39/364 (10%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V + ++  + LG+ K D V I+ P      I  L    IGAI S     ++   L+ ++ 
Sbjct: 98  VCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRIN 157

Query: 94  DSNPKLVITVPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRS-SKI-------VSF 141
           D+  KLVIT  E     K + L A+    L      V    ++ R+ + +       V +
Sbjct: 158 DAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWW 217

Query: 142 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--QE 199
           HDL+    +        +   D   +LY+SG+TG  KGV+ T         ++ A    +
Sbjct: 218 HDLMA--KASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHT-----TGGYLLYAAMTMK 270

Query: 200 LVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALR---AIEKYR 253
            V ++    +  C   +  + G S I+Y  L  G   V+  G        R    IEK++
Sbjct: 271 YVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHK 330

Query: 254 VTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG--ATIF 309
           VT+++  P  I AL +  +  V+K D+SSL+L+GS   P+  E      K +      I 
Sbjct: 331 VTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIV 390

Query: 310 QGYGMTET-CAPISLENPLVGV--RRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIW 365
             +  TET    I+   PL G    + GSA     G+E  +V  +   P+  P + G + 
Sbjct: 391 DTWWQTETGGIMIT---PLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLV 446

Query: 366 VRGP 369
           ++ P
Sbjct: 447 IKQP 450

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 35/227 (15%)

Query: 167 LLYSSGTTGVSKGVILTHKNFIAASL------------MISAHQELVGELDHVVLCVLPM 214
           +LY+ GTTG+ KGV+   ++     L               A Q   G      L   P+
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67

Query: 215 FHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVV-----PPIILAL 267
            H  G  + L   L  G  VV +   KFD +   R +EK+RV    +V      P++ AL
Sbjct: 68  MHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126

Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL 327
                  ++D+SSL+ + S  A    E+ +   + +P   +    G +ET    S     
Sbjct: 127 EAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGS----- 178

Query: 328 VGVRRSGSA---GTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGP 369
             V R+G A   G    G +  ++  D    +PP   ++G I   G 
Sbjct: 179 -SVSRAGGASATGKFELGPDTVVLDEDG-SEVPPGSGEVGWIARGGR 223

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 79.6 bits (197), Expect = 4e-16
 Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 47/264 (17%)

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
           +TD   +     D A + +SSG+TG  KGVILTHKN +     I    E+    + V L 
Sbjct: 95  ITDRDSLLSLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEI--TSEDVFLS 152

Query: 211 VLPMFHVFGLSVILYDQLQKG--NCVVSMGKFDIE---MALRAIEKYRVTVWWVVPP--- 262
            +P+ H  GL          G    ++    F I    + L    ++R T+  +  P   
Sbjct: 153 WMPLTHDMGLIGFHLTPTALGINQYLMPTRLF-IRRPLLWLDKASQHRATI--LSSPNFG 209

Query: 263 --IILALAKNSLVRKFDISSLKLVGSGAAP----LGKELMEDCQK-NIPGATIFQGYGMT 315
              +L   K   +  +D+SS++L+ +GA P    L +E +E      +    ++  YG+ 
Sbjct: 210 YKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLA 269

Query: 316 ETCAPISLENP-----LVGVRRSG---------------------SAGTLVAGVEAQIVS 349
           E    +S   P      V + R+                        G+ + G E +IV 
Sbjct: 270 EATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVD 329

Query: 350 VDTLKPLPPNQLGEIWVRGPNVTP 373
            D  + LP   +G I ++G NVT 
Sbjct: 330 -DAGEVLPDRTIGHIQIKGDNVTS 352

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 69/288 (23%)

Query: 137 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 196
           +IV++  L+   G  +  P    K  D A + Y+SGTTG  KGV+LTH N IA     S 
Sbjct: 197 EIVTYSKLLAQ-GRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL 255

Query: 197 HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRV 254
             +     D V +  LP+ H++       +Q+   +  V++G +  D    +  +   R 
Sbjct: 256 STKF-YPSD-VHISYLPLAHIYERV----NQIVMLHYGVAVGFYQGDNLKLMDDLAALRP 309

Query: 255 TVWWVVP--------PIILALAKNSLVRK--FDIS------------------------- 279
           T++  VP         I  A+ ++  +++  F+ +                         
Sbjct: 310 TIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNK 369

Query: 280 -------SLKLVGSGAAPLGKELME---DCQKNIPGATIFQGYGMTETCAPISLENPLVG 329
                   ++ + SGA+PL  ++ME    C     G  + +GYGMTET   IS  +   G
Sbjct: 370 IKAKLGGRVRFMSSGASPLSPDVMEFLRICF----GGRVLEGYGMTETSCVISGMDE--G 423

Query: 330 VRRSGSAGTLVAGVEAQIVSVDTL------KPLPPNQLGEIWVRGPNV 371
              SG  G+     E ++V V  +      +P P    GEI VRGP +
Sbjct: 424 DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPR---GEICVRGPII 468

Length = 651

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 77/300 (25%), Positives = 124/300 (41%), Gaps = 53/300 (17%)

Query: 116 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 175
            AV++G     ++  L  +  ++++  DL+        I  V   + D A +  +SG+TG
Sbjct: 110 KAVVVGEPFLAAAPVLEEKGIRVLTVADLLA----ADPIDPVETGEDDLALMQLTSGSTG 165

Query: 176 VSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 233
             K V +TH N  A   ++ ++A  ++      V++  LP+FH  G+   L   +  G  
Sbjct: 166 SPKAVQITHGNLYANAEAMFVAAEFDVE---TDVMVSWLPLFHDMGMVGFLTVPMYFGAE 222

Query: 234 VVSMGKFD------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-----FDISSLK 282
           +V +   D      +   L  I KYR T+    P    AL    L R+     FD+SSL+
Sbjct: 223 LVKVTPMDFLRDPLLWAEL--ISKYRGTM-TAAPNFAYALLARRLRRQAKPGAFDLSSLR 279

Query: 283 LVGSGAAPLGKELMEDCQK-----NIPGATIFQGYGMTETCAPIS---LENPLV------ 328
              +GA P+    +ED         +    I   YGM E    +S       LV      
Sbjct: 280 FALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDA 339

Query: 329 ---------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
                            RR  + G  + G+E ++V  D  + LPP  +G I +RG +VTP
Sbjct: 340 DLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDED-GQVLPPRGVGVIELRGESVTP 398

Length = 545

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 67/257 (26%), Positives = 104/257 (40%), Gaps = 62/257 (24%)

Query: 141 FHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-- 197
           F  L E            V+     A + Y+SG+TG  KGV L+     AA+L   A   
Sbjct: 90  FATLGEDLYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLS-----AAALETVAQSL 144

Query: 198 QELVGELDHVV-LCVLPMFHVFGLSVIL------YDQLQKGNCVVSM----------GKF 240
            E +  L+    LC+LP      L+ +L      Y  L  G  V+ +             
Sbjct: 145 AEAIAILEPERHLCLLP------LATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGL 198

Query: 241 DIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMED 298
           D    + A+ +++     +VP +++AL  A        +  SL+ V  G A +   L++ 
Sbjct: 199 DPAQFVAALSRWQPHSLILVPQLLMALVAAVEQGPLPPE--SLRFVAVGGARVSPSLLQR 256

Query: 299 CQK-NIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 357
            +   +P   +++GYG++E  + +SL  P  G  R GS G                KPLP
Sbjct: 257 ARALGLP---VYEGYGLSECASVVSLNTP--GADRPGSVG----------------KPLP 295

Query: 358 PNQL-----GEIWVRGP 369
             Q+     GEI VRG 
Sbjct: 296 HVQVSIANDGEILVRGS 312

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 77.6 bits (192), Expect = 2e-15
 Identities = 92/363 (25%), Positives = 146/363 (40%), Gaps = 39/363 (10%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V + ++  + LG+ K D V I+ P     PI  L    IGAI S     ++   L+ ++ 
Sbjct: 88  VCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSAEALADRIN 147

Query: 94  DSNPKLVITVPELWDKVKDLNLPAVL---LGSKDKVSSSGLISRSSKIVSF--------H 142
           D+  KL+IT    +   K + L  ++   L     V    ++ R+   V          H
Sbjct: 148 DAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVPMVEGRDVWWH 207

Query: 143 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
           DL+    +        +   D   +LY+SG+TG  KGV+ T         ++ A      
Sbjct: 208 DLMA--KASPYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTT-----GGYLVYAATTFKY 260

Query: 203 ELDH----VVLCVLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALR---AIEKYRV 254
             D     V  C   +  + G S I+Y  L  G   V+  G  D     R    +EKY+V
Sbjct: 261 VFDIHPDDVYWCTADIGWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKV 320

Query: 255 TVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG--ATIFQ 310
           T+++  P  I  L +  +   +K D+SSL+L+GS   P+  E      + I      I  
Sbjct: 321 TIFYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMWYYEVIGKERCPIVD 380

Query: 311 GYGMTET----CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 366
            +  TET      P+    PL    + GSA     GVE  IV  +    +     G + +
Sbjct: 381 TWWQTETGGHMITPLPGATPL----KPGSATRPFPGVEPAIVDEEG-NEVEGGVEGYLVI 435

Query: 367 RGP 369
           + P
Sbjct: 436 KRP 438

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 90/403 (22%), Positives = 164/403 (40%), Gaps = 45/403 (11%)

Query: 45  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 104
           G+  +  V + APNS+   I  L +  +GA+ +  NP    +E+++ +K       +   
Sbjct: 49  GVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAV 108

Query: 105 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 164
           +         + A+        S   +++    +     L E   +   I D   +    
Sbjct: 109 D------AQVMDAI----FQSGSGVRVLALGDLV----GLGEPESAGPPIEDPPREPEQP 154

Query: 165 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 224
           A + Y+SGTTG+ KG ++  +   +  L +S    L     +VVL ++P++HV G   +L
Sbjct: 155 AFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVL 214

Query: 225 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 284
              L      V + +FD   AL+ IE+ RVT  +  P  + ALA  +      + SL+ V
Sbjct: 215 VAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHV 274

Query: 285 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR-RSGSAGTLVAGV 343
               A +   ++E   +++PG      YG TE    + + +P  G   R G         
Sbjct: 275 TFAGATMPDAVLERVNQHLPGE-KVNIYGTTEAMNSLYMRDPRTGTEMRPGFFS------ 327

Query: 344 EAQIVSV--DTLKPLPPNQLGEIWVRGPNVTPV-----FELTVNCNLFSYFRSND----H 392
           E +IV +     + LP  + GE+ V   + T        + T       ++R++D     
Sbjct: 328 EVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVVD 387

Query: 393 NDFFCKLF------------QVAPAELEGLLVSHPEILDAVVI 423
                ++              + P+E+E +L   P + + VVI
Sbjct: 388 PSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVI 430

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 107/441 (24%), Positives = 173/441 (39%), Gaps = 68/441 (15%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F   K    K ++ F+ LGI K D V++       F    L +  IGAIA  A  + T 
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTA 108

Query: 86  SELSKQVKDSNPKLVITVPE--LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 143
            ++  +++ +  K+++ + E  + + + +    A   GS   +   G       I  F  
Sbjct: 109 KDIVYRIEAAGIKMIVCIGEDGVPEHIDE---AAPECGSPTLLVLVGDPVPEGWI-DFDK 164

Query: 144 LIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA---HQ 198
            IE +    + P  + +    D   + ++SGTTG+ K V   H +      +++A     
Sbjct: 165 EIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPKMV--EHDHTYPLGHIVTAKYWQN 222

Query: 199 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTV 256
              G L   V        V+G    LY Q   G  V      KFD +  L  IEKY VT 
Sbjct: 223 VKEGGLHLTVADTGWGKAVWGK---LYGQWIAGAAVFVYDYDKFDPKNLLEKIEKYGVTT 279

Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
           +   P I   L K  L  K+D+SSL+   +   PL  E+     K   G  + +G+G TE
Sbjct: 280 FCAPPTIYRFLIKEDL-SKYDLSSLRYCTTAGEPLNPEVFNTF-KEKTGIKLMEGFGQTE 337

Query: 317 TCAPI-SLEN--PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
           T   I +     P     + GS G    G +  I+  D  K     + GEI +R  +  P
Sbjct: 338 TTLTIATFPWMEP-----KPGSMGKPSPGYDIDIIDPDG-KSCEVGEEGEIVIRTSDGKP 391

Query: 374 VFELTVNCNLFS-YFRSND------HNDFF-------------------------CKLFQ 401
           +        LF  Y+R  +      H+ ++                            ++
Sbjct: 392 L-------GLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYR 444

Query: 402 VAPAELEGLLVSHPEILDAVV 422
           + P E+E  L+ HP +L+  V
Sbjct: 445 IGPFEVESALIQHPAVLECAV 465

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 74.9 bits (185), Expect = 1e-14
 Identities = 92/445 (20%), Positives = 158/445 (35%), Gaps = 111/445 (24%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +++   R  G+   DVV +    S    +  L ++  GA     +P Y    L+  ++DS
Sbjct: 24  RLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDS 83

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
             ++++T         D +L  +    +  +                            P
Sbjct: 84  GARVLLT---------DESLAPLARADQLPLVILEEELD--------------AEDAGPP 120

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHK---------NFIAASLMISAHQELVGELDH 206
             +V   D A ++Y+SG+TG  KGV + H+         N+IA    +            
Sbjct: 121 APAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYIA----LDPDD-------- 168

Query: 207 VVLCVLPM------FHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVW 257
             L + P+      F ++G        L  G  +V + K    D +   R I +  VTV 
Sbjct: 169 RFLQLSPLSFDASTFEIWG-------ALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVL 221

Query: 258 WVVPPIILALAKNSLVRKF--DISSLK--LVGSGA--APLGKELMEDCQKNIPGATIFQG 311
           W+   +      N LV +    ++ L+  LVG         + ++  C    PG  +  G
Sbjct: 222 WLTAALF-----NQLVDEDPEALAGLRQLLVGGDVLSPAHVRRVLAAC----PGLRLING 272

Query: 312 YGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 366
           YG TE     TC  I     L     S   G  +      I+  +  +P+P    GE++V
Sbjct: 273 YGPTENTTFSTCHVI---TRLDEAADSIPIGRPIPNTTVYILD-EEGQPVPIGVPGELYV 328

Query: 367 RGPNVTPVF----ELT----VNCNLFS---YFRSND--------------HNDFFCKL-- 399
            G  +   +    ELT    V          +R+ D                D   K+  
Sbjct: 329 GGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIRG 388

Query: 400 FQVAPAELEGLLVSHPEILDAVVIP 424
           F++   E+E  L+ HP + +A V+ 
Sbjct: 389 FRIELGEIEQALLQHPGVREAAVLV 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 216
           ++    D A ++Y+SG+TG  KGV++TH+N    + + +    L       VL       
Sbjct: 94  LTSSPDDPAYVIYTSGSTGKPKGVVITHRNI--CNFLRAEGAILGIRPGDRVLQFAS--I 149

Query: 217 VFGLSV--ILYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLV 273
            F +S+  I    L  G  +V   +      L   + + RVTV  + P    +L   +L+
Sbjct: 150 AFDVSILEIFT-TLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTP----SLL--ALL 202

Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 333
              D+ SL+ +  G     + L     +      +   YG TE    ++     +   + 
Sbjct: 203 DPEDVPSLRTLILGGEACPQAL---VDRWSKPRRLLNTYGPTEAT--VTATASRLTPGKP 257

Query: 334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
            + G  +      ++  D    +P   +GE+ + GP V 
Sbjct: 258 VNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVA 296

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 88/359 (24%), Positives = 143/359 (39%), Gaps = 29/359 (8%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V   + + R LG+ + D VLI+ P         L    IGAI S     +    L+ ++ 
Sbjct: 93  VNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRID 152

Query: 94  DSNPKLVIT----------VP--ELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKI 138
           D+ PKL+++          +P   L D          P VLL  +     + +     + 
Sbjct: 153 DATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDR---GLAPMRLIPGRD 209

Query: 139 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
           V +  L         +P   ++  + + +LY+SGTTG  KGV      + A +L +S   
Sbjct: 210 VDYAAL-RTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGY-AVALALSMWA 267

Query: 199 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG-NCVVSMG---KFDIEMALRAIEKYRV 254
                   V+     +  V G S I+Y  L  G   V+  G     D  +    +E+Y V
Sbjct: 268 IFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGV 327

Query: 255 TVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 312
              +  P  I  L K   + +RK D+SSL  +     PL  E       +  G  +   Y
Sbjct: 328 RTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPL-DEPTAHWITDGLGKPVIDNY 386

Query: 313 GMTETCAPISLENPLVGVR--RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 369
             TET  P+    P + ++  + GS G  + G   +++   T +P  PN+ G + V  P
Sbjct: 387 WQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPP 445

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 80/366 (21%), Positives = 132/366 (36%), Gaps = 77/366 (21%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F        +++   R  GI K D V++  P           +  +GA+    +P    
Sbjct: 4   TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGR 63

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
             L + ++++                    P   +G                        
Sbjct: 64  KHLGRCLEEAE-------------------PDAFIG------------------------ 80

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
                   IP       D AA+L++SG+TG  KGV+ TH+ F AA +        + E D
Sbjct: 81  --------IPKAD----DPAAILFTSGSTGPPKGVVYTHRTF-AAQIDALRSLYGIREGD 127

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 265
              L   P F +FG ++ +   +   +   +    D     +AI +   +  +  P ++ 
Sbjct: 128 -RDLAAFPPFALFGPALGVTTVIPAMD-PTAPAALDPAKLAQAIREIGASCVFGSPALLK 185

Query: 266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI-PGATIFQGYGMTETCAP---I 321
            +A+        + SL+ V S  AP+  +L+     N+ P A I   YG TE   P   I
Sbjct: 186 NVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATE-ALPVASI 244

Query: 322 SLENPLV--GVRRSGSAGTLV----AGVEAQIV--------SVDTLKPLPPNQLGEIWVR 367
                L          AG  V     G++ +I+        S D    LPP ++GEI V 
Sbjct: 245 EGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVS 304

Query: 368 GPNVTP 373
           GP+VT 
Sbjct: 305 GPHVTR 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 74.2 bits (183), Expect = 2e-14
 Identities = 100/444 (22%), Positives = 167/444 (37%), Gaps = 109/444 (24%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++S     V +++     LG+ K D V I+ P      +  L +  IGAIA      +  
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
             ++ +++D+  K++IT                         + G + R           
Sbjct: 69  DAVATRLQDAEAKVLIT-------------------------ADGFLRR----------- 92

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
              G   D+ D      D A ++Y+SGTTG  KG + TH  F   +         +   D
Sbjct: 93  ---GKRVDLKD------DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGD 143

Query: 206 HVVLCVLPM-----------FHVFGLSVILYDQLQKGNCVVSMGKFDIEMA---LRAIEK 251
             +L +  M             + G +++LY+           G  D        R +E+
Sbjct: 144 -RLLWITDMGWMMGPWLVLGGLLLGATIVLYE-----------GAPDYPDPDRLWRIVER 191

Query: 252 YRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPLGKE----LMED-CQKNIP 304
           ++VT   + P +I AL  +  + V   D+SSL+++GS   P   E    L E       P
Sbjct: 192 HKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAP 251

Query: 305 GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 364
              I    G TE    I    P+  ++     G    G++A +V  D  +P+   ++GE+
Sbjct: 252 ---IINYSGGTEISGGILGNVPIRPIKPCSFNG-PSPGMDADVVDEDG-RPVRG-EVGEL 305

Query: 365 WVRGPNV--TPVFELTVNCNLFSYFR------------SNDHNDFFCKL------FQVA- 403
            VR P    T  F       L +Y+               D + ++  L       +VA 
Sbjct: 306 VVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVHGDWALVDEDGYWYILGRSDDTIKVAG 365

Query: 404 ----PAELEGLLVSHPEILDAVVI 423
               PAE+E +L SHP + +A  I
Sbjct: 366 KRVGPAEIESVLNSHPAVAEAAAI 389

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 73.8 bits (182), Expect = 5e-14
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 51/311 (16%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S++  +S V +++ + R LG+   D V  + PN     I  L   +IGAI S+ +P + V
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGV 147

Query: 86  SELSKQVKDSNPKLVITVPELW---------DKVKDL-----NLPAVLLGSKDKVSSSGL 131
             +  +     PK++  V             +K+ ++     +L AV++     +SS   
Sbjct: 148 EAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVV--VPYLSSDAQ 205

Query: 132 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK-------GVILTH 184
            +                    +    +       +LYSSGTTG+ K       G +L H
Sbjct: 206 PAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGTLLQH 265

Query: 185 KNFIAASLMISAHQELVGELDHVVL---CVLPMFH------VFGLSVILYDQLQKGNCVV 235
                       H +L    D +         M++      + G +++LYD    G+   
Sbjct: 266 LK------EHGLHCDL-RPGDRLFYYTTTGWMMWNWLVSGLLSGATLVLYD----GS--- 311

Query: 236 SMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLG 292
               +     L R   K  +T++      + AL K  +   R  D+SSL+ + S  +PL 
Sbjct: 312 --PLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLP 369

Query: 293 KELMEDCQKNI 303
            E  +    ++
Sbjct: 370 PEGFDWVYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 111/468 (23%), Positives = 188/468 (40%), Gaps = 79/468 (16%)

Query: 7   GRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 66
            R+ + RS+  P+V     +++      +KVS +    GI   D V   A N+      +
Sbjct: 25  NREVVTRSVEGPIV---RTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAW 81

Query: 67  LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----VPELWDKVKDLNLPAV---- 118
            G++ IGAI  T NP     +++  +  +  ++VIT    VP L +K+ D  LP+V    
Sbjct: 82  YGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPIL-EKIAD-KLPSVERYV 139

Query: 119 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 178
           +L     +  + L       V++ + I    +  D    +  +  AA + Y+SGTTG  K
Sbjct: 140 VLTDAAHMPQTTL----KNAVAYEEWIA--EADGDFAWKTFDENTAAGMCYTSGTTGDPK 193

Query: 179 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 238
           GV+ +H++ +  +LM +    L       +L V+P+FH     +           V+   
Sbjct: 194 GVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGA 253

Query: 239 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 298
           K D       ++  +VT    VP + L L +        +  LK+V  G + + + +++ 
Sbjct: 254 KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKA 313

Query: 299 CQKNIPGATIFQGYGMTETCAPI----SLENPLVGVRRSGSA--------GTLVAGVEAQ 346
            +    G  +   +GMTE  +P+    +L+ P   +   G A        G    GVE +
Sbjct: 314 FEDM--GVEVRHAWGMTEM-SPLGTLAALKPPFSKL--PGDARLDVLQKQGYPPFGVEMK 368

Query: 347 IVSVDTLKPLP--PNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDH---NDFFCKLFQ 401
           I   D  K LP      G + VRGP V             +Y+R +     +D F     
Sbjct: 369 ITD-DAGKELPWDGKTFGRLKVRGPAVAA-----------AYYRVDGEILDDDGFFDTGD 416

Query: 402 VA--------------------------PAELEGLLVSHPEILDAVVI 423
           VA                            +LE L V HP++ +A VI
Sbjct: 417 VATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVI 464

Length = 542

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 95/360 (26%), Positives = 142/360 (39%), Gaps = 54/360 (15%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELS------KQVKDS-N 96
           LG+     V+I + NSI   +  L  +  G  A+  +P Y  S +S      K + D   
Sbjct: 100 LGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAY--SLMSHDHAKLKHLFDLVK 157

Query: 97  PKLVITVP-ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
           P++V       + +     L A+ L     V  +G     + I +F DL   +   T   
Sbjct: 158 PRVVFAQSGAPFARA----LAALDLLDVTVVHVTGPGEGIASI-AFADL--AATPPTAAV 210

Query: 156 DVSVKQT--DAAA-LLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVLCV 211
             ++     D  A  L++SG+TG+ K VI T +   A  ++              V L  
Sbjct: 211 AAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDW 270

Query: 212 LPMFHVFGLSVILYDQLQKGNCV-VSMGK---FDIEMALRAIEKYRVTVWWVVPPIILAL 267
           +P  H  G +      L  G  + +  GK      E  +R + +   TV+  VP     L
Sbjct: 271 MPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAML 330

Query: 268 AK-----NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT-----IFQGYGMTET 317
           A+     ++L R F   +L+L+  G A L  +L E  Q      T      + GYG TET
Sbjct: 331 AEAMEKDDALRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET 389

Query: 318 CAPISLENPLVGV----RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
            AP +      G      R G  G  + GVE        LK  P     E+ V+GPNVTP
Sbjct: 390 -APTT-----TGTHWDTERVGLIGLPLPGVE--------LKLAPVGDKYEVRVKGPNVTP 435

Length = 624

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 94/412 (22%), Positives = 158/412 (38%), Gaps = 87/412 (21%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA----STANP 81
           ++  +     + + +F  LG+ +   V I   NS  + I  +G I  G IA    +T +P
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSP 69

Query: 82  -----VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS 136
                V   SE +  V D N K +  +  + D++  L    +      K     L S   
Sbjct: 70  EACQYVAETSEANILVVD-NAKQLQKILAIQDQLPHLKA-IIQYREPLKEKEPNLYS--- 124

Query: 137 KIVSFHDLIELSGSVTD-----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS 191
               + + +EL  S+ D     I + S K      L+Y+SGTTG+ KGV+L+H N    +
Sbjct: 125 ----WKEFMELGRSIPDEQLDAIIE-SQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTA 179

Query: 192 LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIEMALR 247
                H +L       V+  LP+ H+    + ++  +  G CV        K  +   LR
Sbjct: 180 KAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLR 239

Query: 248 AIEKYRVTVWWVVP--------PIILALAKNSLVRK----------FDISSLKLVGSGAA 289
              + R T +  VP         +    AK++ +++           + +   + G    
Sbjct: 240 ---EVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESPP 296

Query: 290 PLGKEL--------------MEDCQKNIPGAT----------------IFQGYGMTETCA 319
           P+   L              ++ CQK   GA                 I + YGM+ET  
Sbjct: 297 PMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSG 356

Query: 320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           P ++ NP     R  S G  + G E +I + D       + +GEI + G +V
Sbjct: 357 PHTVSNP--QNYRLLSCGKALPGCETKIHNPDA------DGIGEICIWGRHV 400

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 69.9 bits (172), Expect = 6e-13
 Identities = 85/430 (19%), Positives = 164/430 (38%), Gaps = 84/430 (19%)

Query: 37  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 96
           ++ + R  G+   D+V +  P      +  LG++  GA     +P       +  +  + 
Sbjct: 25  IAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAG 84

Query: 97  PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 156
            + V+T P L                             +  +        +      P 
Sbjct: 85  ARAVLTDPGLAQPE------------------------EAPDLLVVADDAAAAESPAPPP 120

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCV---- 211
             V   D A ++++SG+TG  KGV++TH+   A + ++  ++   VG  D  VL +    
Sbjct: 121 PRVDPDDLAYVIFTSGSTGEPKGVMITHRA--AVNTILDVNRRFGVGPAD-RVLALSALH 177

Query: 212 --LPMFHVFGL-----SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI- 263
             L ++ +FG      +++L D+ ++          D +     ++++ VTVW  VP + 
Sbjct: 178 FDLSVYDIFGALSAGAALVLPDEARRR---------DPDHWAELVQRHGVTVWNSVPALM 228

Query: 264 --ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 321
             +L  A+++      + SL+LV      +  +L    +   PGA +    G TE  +  
Sbjct: 229 DMLLTYAEDAARL---LPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEA-SIW 284

Query: 322 SLENPLVGV---RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--- 375
           S+  P+  V    RS   G  +   +  ++  +  +  P    GE+++ G  V   +   
Sbjct: 285 SIYYPIDDVDPDWRSIPYGKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGVALGYWGD 343

Query: 376 -ELTVNCNLF-----SYFRSNDH--------------NDFFCKL--FQVAPAELEGLLVS 413
            ELT    +        +R+ D                D   K+  ++V   E+E  L  
Sbjct: 344 PELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALAR 403

Query: 414 HPEILDAVVI 423
           HP +  AVV+
Sbjct: 404 HPGVQRAVVV 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 69.1 bits (170), Expect = 1e-12
 Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 29/200 (14%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           + +H     G+ K DVV +   N   +   +LG+  +GA+ +  N     + L+  +   
Sbjct: 74  RYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLV 133

Query: 96  NPKLVITVPELW---DKVKDLNLPAV---LLGSKDKVSSSGLISRSSKIVSFHDLIELS- 148
           + K +I   EL    ++ +          + G        G            DL   + 
Sbjct: 134 DAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYE----------DLAAAAA 183

Query: 149 GSVTDIPDVSVKQT--DAAALLYSSGTTGVSKGVILTHKNFIAA----SLMISAHQELVG 202
           G+ T  P      T  D A  +Y+SGTTG+ K  +++H  ++ A      ++        
Sbjct: 184 GAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTP---- 239

Query: 203 ELDHVVLCVLPMFHVFGLSV 222
             D V+ C LP++H  G +V
Sbjct: 240 --DDVLYCCLPLYHNTGGTV 257

Length = 600

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 69.0 bits (168), Expect = 1e-12
 Identities = 69/284 (24%), Positives = 108/284 (38%), Gaps = 15/284 (5%)

Query: 35  IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 94
            ++    R LG+   D V     N       +  V  +GA+  TANP  +  E++  +  
Sbjct: 35  RRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNH 94

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           +  K+++  P L      L L   + G    V          K    +   E      + 
Sbjct: 95  AEDKVLLFDPNL------LPLVEAIRGELKTVQHFV--VMDEKAPEGYLAYE-EALGEEA 145

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
             V V +  A  + Y++GTTG+ KGV+ +H+  +  SL  S           VVL V+PM
Sbjct: 146 DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 205

Query: 215 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSL 272
           FHV    +     L     V+   + D    +   +   VT    VP +   LA    S 
Sbjct: 206 FHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 265

Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
             +       +VG  AAP     +    +   G  + QGYG+TE
Sbjct: 266 GHRLKTLRRLVVGGSAAP---RSLIARFE-RMGVEVRQGYGLTE 305

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 107/423 (25%), Positives = 168/423 (39%), Gaps = 76/423 (17%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V + S    +L I+K D VLI+  N++   I  L    IGA        Y+V  L  +++
Sbjct: 102 VCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIE 161

Query: 94  DSNPKLVITVPE--LWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 149
              PKL+IT     L D++     NL   +  S  K S+   + R+  I S  DL ++  
Sbjct: 162 TITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRND-ITSESDLKKI-E 219

Query: 150 SVTDIPD----------------------VSVKQTDAAALLYSSGTTGVSKGVILTHKNF 187
           ++  IP+                      V V+ +    +LY+SGTTG SK V+ ++   
Sbjct: 220 TIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPH 279

Query: 188 IAA-----SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDI 242
           +         +I      V      +  V   FH F     LY  L  GN  V M +  I
Sbjct: 280 LVGLKYYWRSIIEKDIPTVVFSHSSIGWVS--FHGF-----LYGSLSLGNTFV-MFEGGI 331

Query: 243 ------EMAL-RAIEKYRVTVWWVVPPIILALAKNS-----LVRKFDISSLKLVGSGAAP 290
                 E  L   IEK++VT    +P  I  L K       +  K+D+S+LK +  G   
Sbjct: 332 IKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEV 391

Query: 291 LGKELMEDCQKNIPGATIFQGYGMTET--CAPISLENPLVGVRRSGSAGTLVAGVEAQIV 348
           + + + E  +  +      +GYG TE          +  +    +G        ++  I+
Sbjct: 392 IEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIF---IKPSIL 447

Query: 349 SVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCN------LFS----YFRSND-----HN 393
           S D  K L  N++GE+  + P + P F  T   N      LFS    Y+ S D      N
Sbjct: 448 SEDG-KELNVNEIGEVAFKLP-MPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDEN 505

Query: 394 DFF 396
            ++
Sbjct: 506 GYY 508

Length = 647

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 88/372 (23%), Positives = 153/372 (41%), Gaps = 31/372 (8%)

Query: 23  SDPSFSMFKSIVIKVS---HSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 78
           ++   + F +I  + +   H+    LGIT    V     N          V  +GA+ + 
Sbjct: 34  AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNP 93

Query: 79  ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSGLI 132
            N      ++   +  +  ++++  P L +++ ++    P V     +G  D  S++  +
Sbjct: 94  LNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHM 153

Query: 133 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 192
               K+ S+  L++   +V D P++   +T AAA+ YS+GTTG  KGV+ +H++    SL
Sbjct: 154 PEGIKVYSYEALLDGRSTVYDWPEL--DETTAAAICYSTGTTGAPKGVVYSHRSLYLQSL 211

Query: 193 MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY 252
            +     L        LC +P++HV    V L   +     V            + I   
Sbjct: 212 SLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATA 271

Query: 253 RVTVWWVVPPIILAL----AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 308
              V   VP + + L     KN   R     SL+ +  G + +   L++  ++   G  +
Sbjct: 272 MPRVAHGVPTLWIQLMVHYLKNPPERM----SLQEIYVGGSAVPPILIKAWEERY-GVDV 326

Query: 309 FQGYGMTETCAPISLENPLVGVRRSGSA--------GTLVAGVEAQIVSVDTLKPLPPNQ 360
              +GMTET    ++  P  GV  SG A        G   A +E +IV+   +       
Sbjct: 327 VHVWGMTETSPVGTVARPPSGV--SGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRN 384

Query: 361 LGEIWVRGPNVT 372
            GEI VRG  VT
Sbjct: 385 EGEIQVRGNWVT 396

Length = 576

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 67.7 bits (165), Expect = 5e-12
 Identities = 78/341 (22%), Positives = 135/341 (39%), Gaps = 30/341 (8%)

Query: 36   KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
            +++H+    G+  + +V I    S    +  L V+  G      +P Y    L+  ++DS
Sbjct: 4588 RLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDS 4647

Query: 96   NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
               L++T   L  +   L +P  L        +S  + R           +  G     P
Sbjct: 4648 GAALLLTQSHLLQR---LPIPDGL--------ASLALDRDE---------DWEGFPAHDP 4687

Query: 156  DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
             V +   + A ++Y+SG+TG  KGV ++H + +          EL  + D V+  +   F
Sbjct: 4688 AVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPD-DRVLQFMSFSF 4746

Query: 216  HVFGLSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
                    LY  L  G  VV      +D E     I ++RVTV    P  +  LA+++  
Sbjct: 4747 DGSHEG--LYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHA-E 4803

Query: 274  RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 333
            R  +  SL++   G   + +   +   + +    +F GYG TET   + L     G    
Sbjct: 4804 RDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACG 4863

Query: 334  GSA---GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
             +    GT +      ++    L PLP    GE+++ G  V
Sbjct: 4864 AAYMPIGTPLGNRSGYVLD-GQLNPLPVGVAGELYLGGEGV 4903

Length = 5163

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 53/304 (17%)

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 216
           V  K  +  A+ ++SGTTG  K    +H +      +   +   +   D ++  +     
Sbjct: 169 VKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSD-IMWNMSDTGW 227

Query: 217 VFGLSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 274
           +      L+    +G CV    + +FD ++ L+ + KY +T +   P +   L +  L  
Sbjct: 228 IKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTS 287

Query: 275 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET---CAPISLENPLVGVR 331
            +   SL+   +G  PL  E++E   K   G  +++GYG TET   CA     N      
Sbjct: 288 -YKFKSLRHCVTGGEPLNPEVLEQ-WKAQTGLDLYEGYGQTETGLICA-----NFKGMKI 340

Query: 332 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN- 390
           + GS G      + QI+  D    LPP   G+I +R     P         LFS +  N 
Sbjct: 341 KPGSMGKASPPYDVQIID-DNGNVLPPGTEGDIGIRVKPTRPFC-------LFSCYVDNP 392

Query: 391 --------------------DHNDFFCKL-----------FQVAPAELEGLLVSHPEILD 419
                               D + +F  +           +++ P E+E  L+ HP +++
Sbjct: 393 EKTAATIRGDFYITGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVE 452

Query: 420 AVVI 423
           + V+
Sbjct: 453 SAVV 456

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 93/372 (25%), Positives = 144/372 (38%), Gaps = 71/372 (19%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 101
           R LG+ + D VLI+ P         L    IGAI S     +    L+ ++ D+ P L++
Sbjct: 102 RSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIV 161

Query: 102 T----------VP--ELWDKVKDL---NLPAVLLGSKDKVSSSGLIS---RSSKIVSFHD 143
           +          VP   L D+   L       VLL  +      GL      + + V +  
Sbjct: 162 SADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDR------GLAPMARVAGRDVDYAT 215

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
           L         +P   ++  + + +LY+SGTTG  KGV                 Q   G 
Sbjct: 216 LRAQHLG-ARVPVEWLESNEPSYILYTSGTTGKPKGV-----------------QRDTG- 256

Query: 204 LDHVVLCVLPMFHVF------------------GLSVILYDQLQKGNC-VVSMG---KFD 241
             + V     M  +F                  G S I+Y  L  G   ++  G   + D
Sbjct: 257 -GYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPD 315

Query: 242 IEMALRAIEKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPLGKELMEDC 299
             +  R +EKY+V   +  P  I  L K   +L+RK D+SSL+ +     PL +      
Sbjct: 316 AGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWI 375

Query: 300 QKNIPGATIFQGYGMTETCAPISLENPLVGVR--RSGSAGTLVAGVEAQIVSVDTLKPLP 357
            + + G  +   Y  TET  PI      V  R  R GS G  + G   ++++  T +P  
Sbjct: 376 SEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCG 434

Query: 358 PNQLGEIWVRGP 369
           PN+ G + + GP
Sbjct: 435 PNEKGVLVIEGP 446

Length = 629

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 16/228 (7%)

Query: 36  KVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 94
           +V+ +   H G+   D V +   N   F   +LG+  +G   +  N       L    + 
Sbjct: 15  QVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGSLLHCFRC 74

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK---IVSFHDLI--ELSG 149
              ++++  PEL + V+++ LPA+    +        +S +S    ++S    +      
Sbjct: 75  CGARVLVADPELLEAVEEI-LPAL----RAMGVRVFYLSHTSPPEGVISLLAKVDAASDE 129

Query: 150 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVV 208
            V       V     A  +Y+SGTTG+ K   ++H   +  S M      L G   D VV
Sbjct: 130 PVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGM----LSLCGVTADDVV 185

Query: 209 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
              LP++H  G  + +   +  G  +V   KF          KY VTV
Sbjct: 186 YTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTV 233

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 65/283 (22%), Positives = 126/283 (44%), Gaps = 28/283 (9%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V ++++  + +G+ K D V+I+ P  +  PI  L    IGA+ S     ++   L++++ 
Sbjct: 130 VCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIV 189

Query: 94  DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL-------------ISRSS---- 136
           D  PK+VIT   +    K +NL  ++  + D+ + +G+             + R      
Sbjct: 190 DCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQ 249

Query: 137 --KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI 194
             + V + D++      T      V   D   LLY+SG+TG  KGV+ T   ++  +   
Sbjct: 250 EGRDVWWQDVV--PNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATT 307

Query: 195 SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRA---IE 250
             +       D V  C      + G S + Y  +  G  V+   G  +   + R    ++
Sbjct: 308 FKYAFDYKPTD-VYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVD 366

Query: 251 KYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPL 291
           KY+VT+++  P ++ +L ++    V +    SL+++GS   P+
Sbjct: 367 KYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPI 409

Length = 666

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 94/415 (22%), Positives = 152/415 (36%), Gaps = 89/415 (21%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +V++  R  G+ + D VL+  PN        L  I +GA+   A  + T ++L       
Sbjct: 12  RVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLTPADLR------ 65

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
                       D+       A+                                V D  
Sbjct: 66  ------------DRFSRGKPKAI--------------------------------VAD-- 79

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
               +  D   L ++SGTTG+ K V+ TH ++    L       L     H+ +   P +
Sbjct: 80  --ETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIHLNISS-PGW 136

Query: 216 HVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
                S   +     G  V  +   +FD    L A+EK+ VT  +  PP +  +     +
Sbjct: 137 AKHAWSS-FFAPWNAGATVFGINYPRFDARRYLGALEKFGVTT-FCAPPTVWRMFIQQDL 194

Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 333
            ++D+   + V +G  PL  E++E  +K   G TI  GYG TET A I   N      + 
Sbjct: 195 AQYDVRLREAVSAG-EPLNPEVIERVKKAW-GLTIRDGYGQTETTAMIG--NSPGQKVKP 250

Query: 334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR-GPNVTPVF-------ELTVNCNLFS 385
           GS G  + G   ++V +D      P   GEI +  G     +        E T       
Sbjct: 251 GSMGRPLPGY--RVVLLDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGG 308

Query: 386 YFRSND--------------HNDFFCKL--FQVAPAELEGLLVSHPEILDAVVIP 424
           Y+R+ D                D   K   ++++P E+E  L+ HP + +A V+P
Sbjct: 309 YYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVP 363

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 84/274 (30%)

Query: 160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV------LCVLP 213
           ++TD   ++Y+SGTTG  KGVILT++  IA  L       L+   D V          LP
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLST---DHLLKVTDRVATEEDSYFSYLP 274

Query: 214 MFHVFGLSVILYDQLQKGNCV---VSMG--KFDIEMALRAIEKYRVTVWWVVPP------ 262
           + HV       YDQ+ +  C+    S+G  + DI   +  ++  + T++  VP       
Sbjct: 275 LAHV-------YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIY 327

Query: 263 --IILALAKNSLVRK--FDIS-----------------------------------SLKL 283
             I+  ++   ++RK  FD +                                    ++L
Sbjct: 328 TGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRL 387

Query: 284 VGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA----PISLENPLVGVRRSGSAGTL 339
           + SGAAPL + + E+  +    + + QGYG+TE+C      I+    +V     G+ G  
Sbjct: 388 LLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMV-----GTVGVP 441

Query: 340 VAGVEAQIVSV-----DTLKPLPPNQLGEIWVRG 368
           +  +EA++ SV     D L  +P    GEI +RG
Sbjct: 442 MTTIEARLESVPEMGYDALSDVPR---GEICLRG 472

Length = 660

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 65.4 bits (159), Expect = 3e-11
 Identities = 77/347 (22%), Positives = 129/347 (37%), Gaps = 48/347 (13%)

Query: 36   KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
            +++H  R  G+  +  V I A  S    +  L V+  G      +P Y    L+  ++DS
Sbjct: 2040 RLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDS 2099

Query: 96   NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
               L++T   L +    L LPA            G+       +      E +      P
Sbjct: 2100 GAALLLTQRHLLE---RLPLPA------------GVAR-----LPLDRDAEWADYPDTAP 2139

Query: 156  DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
             V +   + A ++Y+SG+TG+ KGV ++H   +A         EL    D    C L  F
Sbjct: 2140 AVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYEL-SPAD----CEL-QF 2193

Query: 216  HVFGLSVI---LYDQLQKGNCVVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
              F         +  L  G  V+      +D E     +E++ VT+    P  +  LA++
Sbjct: 2194 MSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEH 2253

Query: 271  SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL-----EN 325
            +       +       G A +    +    + +    +F GYG TE      L     ++
Sbjct: 2254 AERDGRPPAVRVYCFGGEA-VPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQD 2312

Query: 326  PLVGVRRSGSA----GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
            P       G+A    G  +    A I+  D L  L P   GE+++ G
Sbjct: 2313 P------CGAAYVPIGRALGNRRAYILDAD-LNLLAPGMAGELYLGG 2352

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 79/341 (23%), Positives = 134/341 (39%), Gaps = 36/341 (10%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +++H     G+    +V I    SI   +  L V+  G      +P Y    L+  + DS
Sbjct: 549 RLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDS 608

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
             +L++T   L   +  L +PA L                  +        L G     P
Sbjct: 609 GVRLLLTQSHL---LAQLPVPAGL----------------RSLCLDEPADLLCGYSGHNP 649

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
           +V++   + A ++Y+SG+TG  KGV ++H   +A  + + A +  +   D +++     F
Sbjct: 650 EVALDPDNLAYVIYTSGSTGQPKGVAISHGA-LANYVCVIAERLQLAADDSMLMVSTFAF 708

Query: 216 HVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
            +      L+  L  G  +  +      D E     +    VTV  +VP  + AL + S 
Sbjct: 709 DLGVT--ELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR 766

Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA-----PISLENPL 327
           V         LV  G A L  +L+   +   PGA +   YG TET        +S E   
Sbjct: 767 VAL-PRPQRALVCGGEA-LQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERD 824

Query: 328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
            G    G     +A +   I+    L P+P   +GE+++ G
Sbjct: 825 FGNVPIGQP---LANLGLYILDHY-LNPVPVGVVGELYIGG 861

Length = 3956

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 63.7 bits (156), Expect = 7e-11
 Identities = 74/235 (31%), Positives = 107/235 (45%), Gaps = 49/235 (20%)

Query: 165 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 224
           A  L++SG+TG+ K VI TH+   A   M++     + E   V++  LP  H FG +  L
Sbjct: 212 AKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL 271

Query: 225 YDQLQKGNCVVSM---------GKFDIEM--ALRAIEKYRVTVWWVVPP----IILALAK 269
              L  G    ++         G FD E    LR I     TV++ VP     ++ AL +
Sbjct: 272 GIVLYNGG---TLYIDDGKPTPGGFD-ETLRNLREISP---TVYFNVPKGWEMLVPALER 324

Query: 270 N-SLVRKFDISSLKLVGSGAAPLGKEL--------MEDCQKNIPGATIFQGYGMTETCAP 320
           + +L R+F  S LKL+    A L +++           C + I   T   G GMTET AP
Sbjct: 325 DAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT---GLGMTET-AP 379

Query: 321 --ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
                  PL    R+G+ G    G E ++V V         +L E+ V+GPNVTP
Sbjct: 380 SATFTTGPLS---RAGNIGLPAPGCEVKLVPVG-------GKL-EVRVKGPNVTP 423

Length = 614

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 87/420 (20%), Positives = 149/420 (35%), Gaps = 92/420 (21%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT---VSELSKQV 92
           +V++    LG+   D V    P +    +  L    +GAI     P++T      +  ++
Sbjct: 12  RVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYV---PLFTAFGPKAIEYRL 68

Query: 93  KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 152
             S  K+V+T      K+ D                                        
Sbjct: 69  GHSGAKVVVTNAANRGKLDD---------------------------------------- 88

Query: 153 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVL 209
                     D  A +Y+SGTTG+ KGV +   N +AA     A+     +L   D    
Sbjct: 89  ----------DLFAQMYTSGTTGLPKGVPVPL-NALAA---FYAYMRYAIDLRDDDVFWN 134

Query: 210 CVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILAL- 267
              P +  +GL   +   L  G   V + G F  E     +E+  VT +   P     L 
Sbjct: 135 IADPGW-AYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLM 193

Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL 327
           A  +         L++  S   PL  E++   Q N+ G TI   YG TET  P+   + L
Sbjct: 194 AAGADAAARIKLKLRVASSAGEPLNPEVVRWFQANL-GVTIHDHYGQTETGMPVGNHHAL 252

Query: 328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------ELTV 379
               R+GS G  + G    ++  D  +PL   + G++ +   +   ++        E T 
Sbjct: 253 AHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTA 311

Query: 380 NCNLFSYFRSND----HNDFFCKL------------FQVAPAELEGLLVSHPEILDAVVI 423
                 ++ + D      D +               +++ P ++E  L+ HP + +A V+
Sbjct: 312 ELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVV 371

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 51/289 (17%)

Query: 167 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 226
           +L +SGTTG  KG             + +         +   + V PMFH +G S ++  
Sbjct: 201 ILLTSGTTGTPKGA--RRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVL- 257

Query: 227 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKL 283
                  +V+  +FD E  L  I+++R T   VVP +   I+ L       ++   SL+ 
Sbjct: 258 AASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR-NRYSGRSLRF 316

Query: 284 VGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV 343
             +  + +  +++        G  I+  Y  TE    I+   P        +AG    G 
Sbjct: 317 AAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEA-GMIATATPADLRAAPDTAGRPAEGT 374

Query: 344 EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS----NDHNDFFC-- 397
           E +I+  D  + +P  ++G I+VR            N   F  + S    + H+ F    
Sbjct: 375 EIRILDQD-FREVPTGEVGTIFVR------------NDTQFDGYTSGSTKDFHDGFMASG 421

Query: 398 ---------KLF--------------QVAPAELEGLLVSHPEILDAVVI 423
                    +LF               V P E+E  L +HP++ +A VI
Sbjct: 422 DVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVI 470

Length = 537

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 96/369 (26%), Positives = 159/369 (43%), Gaps = 65/369 (17%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELS 89
           V + +++ + LG+ K D V I+ P      +  L    IGA+ S    V    ++   L+
Sbjct: 108 VCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHS----VVFGGFSAEALA 163

Query: 90  KQVKDSNPKLVITVPELWDKVKDLNLPAVL---LGSKDKVSSSGLISRSSKIVS------ 140
            ++ D+  KLVIT  E     K + L A +   L +   V    ++ R+   V       
Sbjct: 164 DRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRD 223

Query: 141 --FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI------LTHKNFIAASL 192
             +H+L+   G+  +     +   D   +LY+SG+TG  KGV+      L +    AA  
Sbjct: 224 LWWHELVA--GASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVY----AAMT 277

Query: 193 MISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVV---------SMGKF- 240
           M     + V +     V  C   +  V G S I+Y  L  G   +           G+F 
Sbjct: 278 M-----KYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFW 332

Query: 241 DIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMED 298
           ++      I+K++VT+++  P  I AL K  +   +K+D+SSL+L+GS   P+  E  E 
Sbjct: 333 EV------IDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEW 386

Query: 299 CQKNIPGAT--IFQGYGMTET-CAPISLENPLVGVR--RSGSAGTLVAGVEAQIVSVDTL 353
             K + G    I   +  TET    I+   PL G    + GSA   + G++  +V  +  
Sbjct: 387 YYKVVGGERCPIVDTWWQTETGGIMIT---PLPGATPLKPGSATRPLPGIQPAVVD-EEG 442

Query: 354 KPLPPNQLG 362
            PL   + G
Sbjct: 443 NPLEGGEGG 451

Length = 637

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 80/305 (26%), Positives = 125/305 (40%), Gaps = 62/305 (20%)

Query: 162 TDAAAL---LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF 218
           TD   L   +Y+SG+TG  KGV + H+N  AA+L+  A      E    VL    +   F
Sbjct: 102 TDPDDLAYVIYTSGSTGRPKGVAIEHRN--AAALLQWAAAVFSAEELAGVLAATSI--CF 157

Query: 219 GLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIE-KYRVTVWWVVPPIILALAK-NSLVRK 275
            LSV  ++  L  G  VV     D  +AL  +  K  VT+   VP     L + ++L   
Sbjct: 158 DLSVFEIFVPLSTGGRVVLA---DNALALPDLPAKAEVTLINTVPSAARELLRHDALP-- 212

Query: 276 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISLENPLVGV 330
              SS++ V     PL +EL++          ++  YG +E     T A +       G 
Sbjct: 213 ---SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEP-----GA 264

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFELTVNCNLF 384
            R+ S G  +AG +A ++    L+P+P    GE+++ G  V       P  ELT    L 
Sbjct: 265 SRTPSIGRPLAGTQAYVLD-AHLQPVPVGVPGELYIGGAGVARGYLGRP--ELTAERFLP 321

Query: 385 SYFRSNDHNDFF-----------------------CKL--FQVAPAELEGLLVSHPEILD 419
           + F  +     +                        K+  F++   E+E  L S P + +
Sbjct: 322 NPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAE 381

Query: 420 AVVIP 424
           AVV+ 
Sbjct: 382 AVVVA 386

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 64/234 (27%), Positives = 93/234 (39%), Gaps = 47/234 (20%)

Query: 165 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH---VVLCVLPMFHVFGLS 221
           A  L++SG+TG+ K VI TH+   A   MI    +    L     V++  LP  H FG +
Sbjct: 167 AKYLFTSGSTGLPKAVINTHRMLCANQAMI---AQCWPFLTEEPPVLVDWLPWNHTFGGN 223

Query: 222 VILYDQLQKGNCVV------SMGKFDIEMA-LRAIEKYRVTVWWVVPPIILALAK----- 269
                 L  G  +         G F+  +  LR +     TV++ VP     L       
Sbjct: 224 HNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVSP---TVYFNVPKGFEMLVDALERD 280

Query: 270 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--------NIPGATIFQGYGMTETCAPI 321
            +L R+F    L+L+    A L +++ +  Q          IP  +   G G TET    
Sbjct: 281 AALRRRF-FKRLRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTS---GLGATETAPTA 336

Query: 322 SL-ENPLVGVRRSGSAGTLVAGVEAQIVSV-DTLKPLPPNQLGEIWVRGPNVTP 373
           +    P     RSG  G    G E ++V     L         E+ V+GPNVTP
Sbjct: 337 TFVHWPTD---RSGVIGLPAPGTELKLVPNGGKL---------EVRVKGPNVTP 378

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 62.1 bits (152), Expect = 2e-10
 Identities = 79/349 (22%), Positives = 132/349 (37%), Gaps = 85/349 (24%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V  ++ + R LG+   D V  + PN     +  L   ++GAI S+ +P + V  +  +  
Sbjct: 124 VAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFG 183

Query: 94  DSNPKLVITVPELW---------DKVKDLN--LP----AVLLGSKDKVSSSGLISRSSKI 138
              PK++I V              KV +L   LP     V++     +  +   +     
Sbjct: 184 QIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVV---PYLGPAAAAAALPGA 240

Query: 139 VSFHDLIELSGSVTDIPDVSVKQTDAAAL--------LYSSGTTGVSK-------GVILT 183
           + + D +               + +   +        LYSSGTTG+ K       G++L 
Sbjct: 241 LLWEDFLA---------PAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLE 291

Query: 184 HKNFIAASLMISAHQEL-----VGELDHV---VLCVLPM--FHVFGL----SVILYDQLQ 229
           H             +EL     +G  D       C   M  + V GL    +++LYD   
Sbjct: 292 H------------LKELGLHCDLGPGDRFFWYTTCGWMMWNWLVSGLLVGATLVLYD--- 336

Query: 230 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSG 287
            G    S    D  +      +  VTV+      + A  K  LV     D+S+L+ +GS 
Sbjct: 337 -G----SPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGST 391

Query: 288 AAPLGKE----LMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR 332
            +PL  E    + E  + ++  A+I  G   T+ C+     NPL+ V R
Sbjct: 392 GSPLPPEGFDWVYEHVKADVWLASISGG---TDICSCFVGGNPLLPVYR 437

Length = 655

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 43/231 (18%)

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 216
           V  +  DAA +L++SG+ G  KGV+ +HK+ +A    I    +     +   +  LP+FH
Sbjct: 360 VKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTP--NDRFMSALPLFH 417

Query: 217 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--- 273
            FGL+V L+  L  G  V     F     L     YR     +VP   L   +N  V   
Sbjct: 418 SFGLTVGLFTPLLTGAEV-----FLYPSPLH----YR-----IVPE--LVYDRNCTVLFG 461

Query: 274 ------------RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP- 320
                         +D + L+ V +GA  L +   +  Q    G  I +GYG+TE CAP 
Sbjct: 462 TSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTE-CAPV 519

Query: 321 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           +S+  P+    + G+ G ++ G++A+++SV  ++     Q G + ++GPN+
Sbjct: 520 VSINVPMAA--KPGTVGRILPGMDARLLSVPGIE-----QGGRLQLKGPNI 563

Length = 718

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 77/395 (19%), Positives = 148/395 (37%), Gaps = 55/395 (13%)

Query: 52  VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 111
           + I   N I F   F G    G      +  +   EL +++  SN  +++T     + + 
Sbjct: 53  IAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLP 112

Query: 112 DLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 171
           D     + +   D+     +I +     +          + ++      Q     + ++S
Sbjct: 113 DEEGRVIEI---DEWK--RMIEKYLPTYAP---------IENV------QNAPFYMGFTS 152

Query: 172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY---DQL 228
           G+TG  K  +   ++++  S   + H   +   D V L    + H    S+ LY     L
Sbjct: 153 GSTGKPKAFLRAQQSWLH-SFDCNVHDFHMKREDSV-LIAGTLVH----SLFLYGAISTL 206

Query: 229 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 288
             G  V  M KF     L  +E   ++V + VP ++ +L K     +   + +K++ SGA
Sbjct: 207 YVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGA 263

Query: 289 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 348
                E  E  +   P A +++ YG +E  + ++        RR  S G     V+ +I 
Sbjct: 264 K-WEAEAKEKIKNIFPYAKLYEFYGASEL-SFVTALVDEESERRPNSVGRPFHNVQVRIC 321

Query: 349 SVDTLKPLPPNQLGEIWVRGP--------NVTPVFELTVNCNL------------FSYFR 388
           +    + +   ++G ++V+ P              EL  +  +            F Y  
Sbjct: 322 NEAG-EEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIV 380

Query: 389 SNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVI 423
             + N        + P E+E +L  HP + + VVI
Sbjct: 381 GREKNMILFGGINIFPEEIESVLHEHPAVDEIVVI 415

Length = 487

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 75/339 (22%), Positives = 135/339 (39%), Gaps = 34/339 (10%)

Query: 36   KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
            +++H    +G+    +V +    S+   +  L V+  G      +P Y    L+  ++DS
Sbjct: 3132 RLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDS 3191

Query: 96   NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
              KL++T   L ++     LPA                     ++  D ++L+G   + P
Sbjct: 3192 GVKLLLTQAHLLEQ-----LPAP---------------AGDTALTL-DRLDLNGYSENNP 3230

Query: 156  DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
               V   + A ++Y+SG+TG  KGV + H    A +  +    E   ELD     +L M 
Sbjct: 3231 STRVMGENLAYVIYTSGSTGKPKGVGVRHG---ALANHLCWIAEAY-ELDANDRVLLFMS 3286

Query: 216  HVFGLSVI-LYDQLQKGNCVVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
              F  +       L  G C+V      +D E   +AI  +R+++    P  +   A+++ 
Sbjct: 3287 FSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG 3346

Query: 273  VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC-APISLENPLVGVR 331
                D +SL +   G   +     E  ++ +    +  GYG TE        +     V 
Sbjct: 3347 GA--DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVC 3404

Query: 332  RSGSA--GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
             +  A  G  VAG    ++    L P+P    GE+++ G
Sbjct: 3405 EAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGG 3442

Length = 3956

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 68/306 (22%), Positives = 116/306 (37%), Gaps = 56/306 (18%)

Query: 73  GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 132
           G +    N     + L+  ++ ++ +L++T  E    +  L+LP V +          L 
Sbjct: 76  GYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRV----------LD 125

Query: 133 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 192
             +    ++ +L+  +G++T   +V     D   L+++SGTTG  K V  +H     A  
Sbjct: 126 VDTP---AYAELVAAAGALTPHREVDAM--DPFMLIFTSGTTGAPKAVRCSHGRLAFAGR 180

Query: 193 MISAHQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALRA 248
            ++    L    D V    +P+FH    + G +      +  G  V    KF     L  
Sbjct: 181 ALTERFGLTR--DDVCYVSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFLDD 234

Query: 249 IEKYRVTVW-WVVPPI--ILAL------AKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 299
           + +Y  T + +V  P+  ILA       A N L   F        G+ A+P      E  
Sbjct: 235 VRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAF--------GNEASPRDIA--EFS 284

Query: 300 QKNIPGATIFQGYGMTETCAPISLEN--PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 357
           ++   G  +  GYG +E    +  E   P       GS G    GV   I + +TL    
Sbjct: 285 RRF--GCQVEDGYGSSEGAVIVVREPGTP------PGSIGRGAPGVA--IYNPETLTECA 334

Query: 358 PNQLGE 363
             +   
Sbjct: 335 VARFDA 340

Length = 540

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 80/342 (23%), Positives = 131/342 (38%), Gaps = 38/342 (11%)

Query: 35  IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 94
            ++    R+ G++  D VL+  P+S       L  +A G +A  ANP     + +   ++
Sbjct: 41  ARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARN 100

Query: 95  SNPKLVITVPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 152
           + P LV+T   L D+ +   +   A L+    +V+                   + G   
Sbjct: 101 TEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPG-------------GYEPMGG--- 144

Query: 153 DIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKN-FIAASLMISAHQELVGELDHVVLC 210
                     DA A   Y+SGTTG  K  I  H +       M      L  E     LC
Sbjct: 145 ----------DALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPE--DTGLC 192

Query: 211 VLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 269
              M+  +GL   ++  L  G + V++      E A     ++  +V + VP     +  
Sbjct: 193 SARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVID 252

Query: 270 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG 329
           +     F   SL+ V S    L   L E   +   G  I  G G TE     +  +  V 
Sbjct: 253 SCSPDSF--RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQ--TFVSNRVD 308

Query: 330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
             R G+ G ++   E ++V+ D     P  + G++WVRGP +
Sbjct: 309 EWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE-GDLWVRGPAI 349

Length = 705

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 91/369 (24%), Positives = 139/369 (37%), Gaps = 76/369 (20%)

Query: 42  RHLGITKKDVVLIFAPNS-----IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 96
              GI + D V +  PN       HF     GV   GA+ +T N     + ++  ++   
Sbjct: 61  ARRGIGRGDTVAVLLPNIPAMVEAHF-----GVPMAGAVLNTLNTRLDAASIAFMLRHGE 115

Query: 97  PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS--VTDI 154
            K++I   E  +  ++               +  L+     +V   D  E  G   +  +
Sbjct: 116 AKVLIVDTEFAEVARE---------------ALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 155 ----------PDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL 200
                     PD +        DA AL Y+SGTTG  KGV+  H+    A L   ++  L
Sbjct: 161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHR---GAYLNALSNI-L 216

Query: 201 VGELDH--VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
              +    V L  LPMFH  G         + G   V + K D ++    I ++ VT  +
Sbjct: 217 AWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGT-NVCLRKVDPKLIFDLIREHGVT-HY 274

Query: 259 VVPPIILAL---AKNSLVRKFDISSLKLVGSGAAPLGK--ELMEDCQKNIPGATIFQGYG 313
              PI+L+    A        D     +V  GAAP       ME+      G  +   YG
Sbjct: 275 CGAPIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKMEEI-----GFDLTHVYG 328

Query: 314 MTETCAPISL--------ENPL----VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN-- 359
           +TET  P ++          PL        R G    L  GV   ++  DT++P+P +  
Sbjct: 329 LTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGV--TVLDPDTMQPVPADGE 386

Query: 360 QLGEIWVRG 368
            +GEI  RG
Sbjct: 387 TIGEIMFRG 395

Length = 545

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 70/339 (20%), Positives = 132/339 (38%), Gaps = 34/339 (10%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +++H+    G+    +V +    SI   +  L ++  G      +P Y    L+  ++DS
Sbjct: 548 RLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDS 607

Query: 96  NPKLVITVPELWDKVK-DLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
             +L+++   L  K+     +  + L   D+ ++                  L G   + 
Sbjct: 608 GVQLLLSQSHLGRKLPLAAGVQVLDL---DRPAA-----------------WLEGYSEEN 647

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVLCVLP 213
           P   +   + A ++Y+SG+TG  KG    H+        M  A+   VG+    VL   P
Sbjct: 648 PGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGD---TVLQKTP 704

Query: 214 MFHVFGLSV-ILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAK 269
               F +SV   +  L  G  +V        D    +  I +  V     VP ++ A  +
Sbjct: 705 F--SFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQ 762

Query: 270 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG 329
           +  V     +SL+ +      L  +  E     +P A ++  YG TE    ++    +  
Sbjct: 763 DEDVA--SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEE 820

Query: 330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
              S   G  +A +   I+  + L+P+P   LGE+++ G
Sbjct: 821 GGDSVPIGRPIANLACYILDAN-LEPVPVGVLGELYLAG 858

Length = 5163

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 62/231 (26%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S++ F +   + +H+ R LG+ K DVV +   N   + + +L +  +GA+A+  N     
Sbjct: 5   SYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQRG 64

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
             L+  +  S+ + VI  P                                        I
Sbjct: 65  EVLAHCINVSDARAVIVDPAF-------------------------------------YI 87

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
             SG                       TTG+ K  I++H+ ++ A  +       + + D
Sbjct: 88  YTSG-----------------------TTGLPKAAIMSHRRWLRAGAVFGGL--GLLKPD 122

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
            V+   LP++H   L+V     L  G  +    KF        + +Y  T 
Sbjct: 123 DVLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATA 173

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 32/304 (10%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +++ S   L ITK DVV + APN+         V   GA+ +  N     + ++  ++ +
Sbjct: 51  RLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHA 110

Query: 96  NPKLVITVPELWDKVKD-----------LNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 144
            PK++          ++           LNLP + +   D          SS+ + +  L
Sbjct: 111 KPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRP-----SSEELDYECL 165

Query: 145 IE-------LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH 197
           I+       L   +  I D    + D  +L Y+SGTT   KGV+++H+    ++L     
Sbjct: 166 IQRGEPTPSLVARMFRIQD----EHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIG 221

Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
            E+      V L  LPMFH  G +   +    +G   V M         + IE + VT  
Sbjct: 222 WEM--GTCPVYLWTLPMFHCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHM 278

Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET 317
             VP +   L K + +     S    V +G +P    L++  Q+   G  +   YG+TE 
Sbjct: 279 CCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR--LGFQVMHAYGLTEA 336

Query: 318 CAPI 321
             P+
Sbjct: 337 TGPV 340

Length = 579

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 89/388 (22%), Positives = 142/388 (36%), Gaps = 96/388 (24%)

Query: 46  ITKK-DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE------LSKQVKDSNPK 98
           +TK  D V I AP ++ + I F G +  G IA    P++  +E      L   + D  P 
Sbjct: 75  VTKPGDRVAILAPQNLDYLIAFFGALYAGRIAV---PLFDPAEPGHVGRLHAVLDDCTPS 131

Query: 99  LVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 156
            ++T  +  + V+      PA                   ++++          V  +PD
Sbjct: 132 AILTTTDSAEGVRKFFRARPA---------------KERPRVIA----------VDAVPD 166

Query: 157 --------VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHV 207
                       +   A L Y+SG+T +  GV +TH N     L +I A   L G+    
Sbjct: 167 EVGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDA---LEGQEGDR 223

Query: 208 VLCVLPMFHVFGLSVILYDQLQKGNCVVSM---------GKFDIEMALRAIEKYRVTVWW 258
            +  LP FH  GL  +L   L  G+ +  M         G++  E+A           + 
Sbjct: 224 GVSWLPFFHDMGLITVLLPALL-GHYITFMSPAAFVRRPGRWIRELA--RKPGGTGGTFS 280

Query: 259 VVPPIILALAKNSLVRK-----FDISSLKLVGSGAAPLGKELMEDCQK-----NIPGATI 308
             P      A    + K      D+S++K + +G+ P+    M    +      +P   I
Sbjct: 281 AAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAI 340

Query: 309 FQGYGMTE-----TCAPISLENPLVGVRRSG--------------------SAGTLVAGV 343
              YGM E     +  P+  E  ++ V R                      SAG +    
Sbjct: 341 KPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSE 400

Query: 344 EAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
            A IV  +T   LP  Q+GEIW+ G N+
Sbjct: 401 WAVIVDPETASELPDGQIGEIWLHGNNI 428

Length = 631

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 170 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 227
           SSGTTG       T K     A  L  S +   V + D V           GL   L+  
Sbjct: 98  SSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLG--LHYG 155

Query: 228 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 284
            ++ G  V+ +   + E  L  ++ ++ TV    P  +L LA+ +     D    SLK  
Sbjct: 156 AERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKG 215

Query: 285 GSGAAPLGKELMEDCQKNIP---GATIFQGYGMTETCAPISLE 324
             GA P  +E+    +K I    G   F  YG+TE   P + E
Sbjct: 216 IFGAEPWSEEM----RKVIENRFGCKAFDIYGLTEGFGPGAGE 254

Length = 438

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 92/414 (22%), Positives = 172/414 (41%), Gaps = 104/414 (25%)

Query: 33  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF----------------LGVIAIGAIA 76
           IVIK+ +S R +G+  +    I+  NS  + I                  LG  A+  I 
Sbjct: 88  IVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFII 147

Query: 77  STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRS 135
           S +       E  K       +L  T P   + +K + +   V    K++  + GL+   
Sbjct: 148 SHSEVSIVFVEEKKI-----SELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLV--- 199

Query: 136 SKIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS--- 191
             I ++ + ++L  G   D+P    K++D   ++Y+SGTTG  KGV++++++ +      
Sbjct: 200 --IYAWDEFLKLGEGKQYDLP--IKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGV 255

Query: 192 --LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG------KFDIE 243
             L+ SA+  L   +  V L  LP+ H+F   +          C +  G      + D++
Sbjct: 256 IRLLKSANAAL--TVKDVYLSYLPLAHIFDRVI--------EECFIQHGAAIGFWRGDVK 305

Query: 244 MALRAIEKYRVTVWWVVPPII--------LALAKNSLVRK--FDIS-------------- 279
           + +  + + + T++  VP ++          L+    ++K  FD +              
Sbjct: 306 LLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSH 365

Query: 280 ---------------------SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 318
                                +++++ SGAAPL   + E   + +    + QGYG+TE+C
Sbjct: 366 VEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESC 424

Query: 319 AP--ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK--PLPPNQLGEIWVRG 368
           A   +SL + L  +   G+ G  V  V+ ++ SV  ++   L     GEI +RG
Sbjct: 425 AGTFVSLPDELDML---GTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRG 475

Length = 666

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 29/196 (14%)

Query: 43  HLGITKKDVVLIFAPNS----IHFPICF---LGVIAI------GAIASTANP--VYTVSE 87
            LG  K++ V IFA       I    CF   + V+ I       A+  + N   V TV  
Sbjct: 125 ALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVIC 184

Query: 88  LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 147
            SKQ+K    KL I +    + VK +    + +  +   S S L   S+  VS    +E 
Sbjct: 185 DSKQLK----KL-IDISSQLETVKRV----IYMDDEGVDSDSSLSGSSNWTVSSFSEVEK 235

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH- 206
            G    +        D A ++Y+SG+TG+ KGV++TH N +A    ++    +V +L   
Sbjct: 236 LGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVAT---VAGVMTVVPKLGKN 292

Query: 207 -VVLCVLPMFHVFGLS 221
            V L  LP+ H+  L+
Sbjct: 293 DVYLAYLPLAHILELA 308

Length = 696

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 97/388 (25%), Positives = 156/388 (40%), Gaps = 67/388 (17%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 94
           +++ +   LG+   D V   A N   H    + GV   GA+  T NP     +++  V  
Sbjct: 51  QLAQALAALGVEPGDRVGTLAWNGYRHLEAYY-GVSGSGAVCHTINPRLFPEQIAYIVNH 109

Query: 95  SNPKLV---ITVPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRSSKIVSFHDLIEL 147
           +  + V   +T   L D +     P V     +     + +      S+ ++ +  L+  
Sbjct: 110 AEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLPAG-----STPLLCYETLVGA 163

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN-----FIAA---SLMISAHQE 199
                D P     Q  A++L Y+SGTTG  KG + +H++     + AA   ++ +SA   
Sbjct: 164 QDGDYDWPRFDENQ--ASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARD- 220

Query: 200 LVGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTV 256
                   VL V+PMFHV  +GL    Y     G  +V  G   D +     IE  RVT 
Sbjct: 221 -------AVLPVVPMFHVNAWGLP---YSAPLTGAKLVLPGPDLDGKSLYELIEAERVTF 270

Query: 257 WWVVPPIILALAKNSLVRKFDISSLK--LVGSGAAPLGKELMEDCQKNIPGATIFQGYGM 314
              VP + L L  +        S+L+  ++G  A P     M    ++  G  +   +GM
Sbjct: 271 SAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACP---PAMIRTFEDEYGVEVIHAWGM 327

Query: 315 TE------TCAPIS--LENPLVGVRRS-GSAGTLVAGVEAQIVSVDTLKPLPPN--QLGE 363
           TE       C       + PL   R+     G ++ GV+ +IV  D  + LP +    G+
Sbjct: 328 TEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDG-RELPWDGKAFGD 386

Query: 364 IWVRGPNVTPVFELTVNCNLFSYFRSND 391
           + VRGP V           +  YFR + 
Sbjct: 387 LQVRGPWV-----------IDRYFRGDA 403

Length = 539

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 84/364 (23%), Positives = 145/364 (39%), Gaps = 68/364 (18%)

Query: 52  VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE-----LSKQVKDSNPKLVITVPEL 106
           VL+F P+   +   F G +  G IA  A P  +        L   + D+ P+L++TV +L
Sbjct: 68  VLLF-PSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADL 126

Query: 107 WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA 166
            D +  +                   + + +++    L           + +++  D A 
Sbjct: 127 RDSLLQME--------------ELAAANAPELLCVDTL--DPALAEAWQEPALQPDDIAF 170

Query: 167 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 226
           L Y+SG+T + KGV ++H N +A   +I     +    D V++  LP++H  GL   L  
Sbjct: 171 LQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQ 230

Query: 227 QLQKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALA----KNSLVRKFDI 278
            +  G  CV+    + +E  LR   AI +Y  T+    P     L       S + + D+
Sbjct: 231 PIFSGVPCVLMSPAYFLERPLRWLEAISEYGGTISG-GPDFAYRLCSERVSESALERLDL 289

Query: 279 SSLKLVGSGAAPLGKELMEDCQKNIPGA-----TIFQGYGMTETCAPISLENPLVGVRR- 332
           S  ++  SG+ P+ ++ +E   +          + F  YG+ E    +S      G RR 
Sbjct: 290 SRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVS------GGRRG 343

Query: 333 ---------------------SGSA----GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR 367
                                +GS     G    G    IV   +L+ L  N++GEIW  
Sbjct: 344 QGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWAS 403

Query: 368 GPNV 371
           GP++
Sbjct: 404 GPSI 407

Length = 4334

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 220
            D A +L++SG+ G  KGV+L+H+N +A    ++A  +   E    V   LP+FH FGL
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPE--DKVFNALPVFHSFGL 849

Length = 1140

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 56/213 (26%), Positives = 83/213 (38%), Gaps = 23/213 (10%)

Query: 152 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 211
            + P       D   L+++SGT+G  K V  TH+   +A +M++    L    D V    
Sbjct: 142 AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGP--DDVCYVS 199

Query: 212 LPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW-WVVPPIILA 266
           +P+FH    + G +V     L  G  +    KF     L  + +Y  T   +V  P+   
Sbjct: 200 MPLFHSNAVMAGWAV----ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYV 255

Query: 267 LAKNSLVRKFDISSLKLV-GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 325
           LA        D + L++V G+  AP              G  +  G+G TE    I+   
Sbjct: 256 LATPERPDDAD-NPLRIVYGNEGAPGDIARFARRF----GCVVVDGFGSTEGGVAITRT- 309

Query: 326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 358
           P       G+ G L  GV   IV  DT    PP
Sbjct: 310 P---DTPPGALGPLPPGV--AIVDPDTGTECPP 337

Length = 529

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 10/97 (10%)

Query: 276 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS 335
           +D  SL+ V +GA  + KE          G  I +GYG+TET   I+L  P+    ++G+
Sbjct: 904 YDFRSLRYVFAGAEKV-KEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHN--KAGT 960

Query: 336 AGTLVAGVEAQIVSVDTLKPLPP-NQLGEIWVRGPNV 371
            G L+ G+E +      L+P+P  ++ G ++VRGPNV
Sbjct: 961 VGRLLPGIEYR------LEPVPGIDEGGRLFVRGPNV 991

Length = 1140

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 50/349 (14%)

Query: 36   KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
            +++H    LG+  + +V I    S+   +  L ++  G      +P Y    L+  ++DS
Sbjct: 1611 RLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDS 1670

Query: 96   NPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
              +L++T   L  ++   + L +++L  +D                      L G     
Sbjct: 1671 GIELLLTQSHLQARLPLPDGLRSLVLDQEDD--------------------WLEGYSDSN 1710

Query: 155  PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLP 213
            P V++   + A ++Y+SG+TG  KG    H   +     + A QE        VVL    
Sbjct: 1711 PAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVN---RLCATQEAYQLSAADVVL---- 1763

Query: 214  MFHVFGLSV----ILYDQLQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILAL 267
             F  F   V    + +  +     V++      D E  ++ IE+ +VT    VP ++  L
Sbjct: 1764 QFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQL 1823

Query: 268  AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET--------CA 319
             +     +  +S  ++V  G A L  E +    + +P   +F  YG TET        C 
Sbjct: 1824 LQMDEQVEHPLSLRRVVCGGEA-LEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCR 1882

Query: 320  PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
               LE      R S   G  +A +   I+   +L P+P    GE+++ G
Sbjct: 1883 RKDLEG-----RDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGG 1925

Length = 3956

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 82/353 (23%), Positives = 142/353 (40%), Gaps = 52/353 (14%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD- 94
           +++   +   + KK  ++++     H  + FLG I  G  A         SE  + + + 
Sbjct: 37  RLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGH-AYIPVDTSIPSERIEMIIEA 95

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           + P+LVI   EL      ++                +I+     +S  +  E SG     
Sbjct: 96  AGPELVIHTAEL-----SIDAVGT-----------QIIT-----LSALEQAETSGGPVSF 134

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
            D +VK  D   ++Y+SG+TG  KGV ++H N ++ +  + A   L        L   P 
Sbjct: 135 -DHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGK--QFLNQAP- 190

Query: 215 FHVFGLSVI-LYDQLQKGNCVVSMGKF---DIEMALRAIEKYRVTVWWVVPPII-LALAK 269
              F LSV+ LY  L  G  +  + K    + ++    + K  + VW   P  + + L  
Sbjct: 191 -FSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLD 249

Query: 270 NSLVRK-------FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-TCAPI 321
            +  ++       F     +L    A    K L+E      P ATI+  YG TE T A  
Sbjct: 250 PNFNQENYPHLTHFLFCGEELPVKTA----KALLE----RFPKATIYNTYGPTEATVAVT 301

Query: 322 SLE--NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
           S++    ++        G     +   I+  +  +PLP  + GEI + GP+V+
Sbjct: 302 SVKITQEILDQYPRLPIGFAKPDMNLFIMDEEG-EPLPEGEKGEIVIVGPSVS 353

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 69/262 (26%), Positives = 105/262 (40%), Gaps = 60/262 (22%)

Query: 160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---LDHVVLCVLPMFH 216
           K  D   ++Y+SGT+G  KGV+LTH+        +    E   +    D V L  LP+ H
Sbjct: 218 KPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277

Query: 217 VF-----------GLSV--------ILYDQLQ--KGNCVVSMGK-FD-----IEMALRAI 249
           +            G SV         L D L   K   +  + + F+     I+ AL+ +
Sbjct: 278 ILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL 337

Query: 250 EK---------YRVTVWWV--------VPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 292
                      Y+  + W+          P+   LA   +  K     L+L+ SG APL 
Sbjct: 338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG-GRLRLLISGGAPLS 396

Query: 293 KELMEDCQKNIPGATIFQGYGMTETCAPISLENP----LVGVRRSGSAGTLVAGVEAQIV 348
            E+ E+  +    A + QGYG+TET  P +L  P    ++     G+ G      E ++ 
Sbjct: 397 TEI-EEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCML-----GTVGAPAVYNELRLE 450

Query: 349 SVDTL--KPLPPNQLGEIWVRG 368
            V  +   PL     GEI VRG
Sbjct: 451 EVPEMGYDPLGEPPRGEICVRG 472

Length = 660

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 92/423 (21%), Positives = 146/423 (34%), Gaps = 114/423 (26%)

Query: 38  SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 97
           +  F   G+ +   V +   NS    + +L ++  GA     NP      L + +     
Sbjct: 42  AAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTL 101

Query: 98  KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 157
              +    L  +     L ++ L   +   +          V++                
Sbjct: 102 DFALV---LEGENTFSALTSLHLQLVEGAHA----------VAWQP-------------- 134

Query: 158 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-----SLMISAHQELVGELDHVVLCVL 212
                  A +  +SG+TG+ K  + T +  +A+     SLM    Q      D  +L  L
Sbjct: 135 ----QRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQ------DSWLLS-L 183

Query: 213 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
           P+FHV G   I++  L  G  +V   K  +E AL        T   +VP  +  L  N  
Sbjct: 184 PLFHVSGQG-IVWRWLYAGATLVVRDKQPLEQALAG-----CTHASLVPTQLWRLLDNRS 237

Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET----CAPISLENPLV 328
                  SLK V  G A +  EL E  ++   G   + GYG+TE     CA         
Sbjct: 238 EP----LSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCA--------- 282

Query: 329 GVRRSGSA--GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP----------NVTPVFE 376
             R  G A  G+ + G E ++V             GEIW+RG            + P+  
Sbjct: 283 -KRADGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPL-- 327

Query: 377 LTVNCNLFSYFRSNDH---------------NDFFCKLFQVAPAELEGLLVSHPEILDAV 421
                N   +F + D                N FF     + P E+E ++  HP +    
Sbjct: 328 ----VNDEGWFATRDRGEWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVF 383

Query: 422 VIP 424
           V+P
Sbjct: 384 VVP 386

Length = 458

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 98/437 (22%), Positives = 157/437 (35%), Gaps = 137/437 (31%)

Query: 37  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 96
           ++   R LG+   D V +    S       L ++  GA     +P Y    L   ++D+ 
Sbjct: 25  LAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAE 84

Query: 97  PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 156
                              PA+LL                               TD PD
Sbjct: 85  -------------------PALLL-------------------------------TD-PD 93

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVV----LCV 211
                 D A ++Y+SG+TG  KGV ++H+     + ++S  +   +G  D ++    +  
Sbjct: 94  ------DLAYVIYTSGSTGKPKGVEVSHRAL--VNFLLSMARRPGLGASDRLLAVTTIS- 144

Query: 212 LPMFHVFGLSVI-LYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPP---II 264
                 F +SV+ L   L  G  VV        D E   R I   R+T+    P    ++
Sbjct: 145 ------FDISVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATPATWRML 198

Query: 265 LA--LAKNSLVRKFDISSLKLVGSGAAP--LGKELMEDCQKNIPGATIFQGYGMTET--- 317
           LA        +         L G  A P  L + L+         A ++  YG TET   
Sbjct: 199 LAAGWRGRESLT-------ALCGGEALPRDLAERLLSTG------AELWNMYGPTETTIW 245

Query: 318 --CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
             CA ++  +  V + R   A T V  ++        L+P+PP   GE+++ G  V   +
Sbjct: 246 STCARVTAADGPVTIGRP-IANTQVYVLDED------LQPVPPGVPGELYIGGDGVARGY 298

Query: 376 ----ELT----VNCNLFSY-----FRSND--------------HNDFFCKL--FQVAPAE 406
               ELT    V  + F       +R+ D                D   K+  F++   E
Sbjct: 299 LGRPELTAERFVP-DPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGE 357

Query: 407 LEGLLVSHPEILDAVVI 423
           +E  L +HP + DAVV+
Sbjct: 358 IEAALRAHPGVADAVVV 374

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 55/223 (24%), Positives = 82/223 (36%), Gaps = 43/223 (19%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           KV++ F+  G    DVV +F  N + F   +LG+  IG   +  N    +  L   +  S
Sbjct: 15  KVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRLESLLHCITVS 74

Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
             K +I            NL   LL      + S     S   V+F D +          
Sbjct: 75  KAKALIF-----------NLLDPLL------TQSSTEPPSQDDVNFRDKL---------- 107

Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKN--FIAASLMISAHQELVGELDHVVLCVLP 213
                       +Y+SGTTG+ K  ++ H     IAA     A+       + VV   LP
Sbjct: 108 ----------FYIYTSGTTGLPKAAVIVHSRYYRIAA----GAYYAFGMRPEDVVYDCLP 153

Query: 214 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
           ++H  G  + +   L  G+ VV   KF          KY  T+
Sbjct: 154 LYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTI 196

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 21/217 (9%)

Query: 160 KQTDAAALLYSSGTTGVSKGVI--LTHKNFIAAS---LMISAHQELVGELDHVVLCVLPM 214
           +Q   A +LYSSGTTG  KG+   L  ++  A     + I+     + E D +     P+
Sbjct: 146 EQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESD-IYYSSAPI 204

Query: 215 FHVFGLS-VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK-NSL 272
           +H   L    +   L  G  VV   +FD +  L  +E+YR+TV  +VP + + L K ++ 
Sbjct: 205 YHAAPLRWCSMVHAL--GGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDAD 262

Query: 273 VR-KFDISSLKLVGSGAAPLG---KELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV 328
           VR ++D+SSL+ V   AAP     K  M D      G  +++ Y  TE      +++P  
Sbjct: 263 VRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL----GPIVYEYYSSTEAHGMTFIDSP-D 317

Query: 329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 365
            +   GS G  V G     +  D    LP  ++G ++
Sbjct: 318 WLAHPGSVGRSVLGDLH--ICDDDGNELPAGRIGTVY 352

Length = 501

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 66/334 (19%), Positives = 119/334 (35%), Gaps = 32/334 (9%)

Query: 36   KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
            +++H     G+    +V +    S+   +  L ++  G      +P Y    L+  ++DS
Sbjct: 3094 RLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDS 3153

Query: 96   NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
              +L+++   L             L     V     + R  +  +  +           P
Sbjct: 3154 GAQLLLSQSHL------------RLPLAQGVQVL-DLDRGDENYAEAN-----------P 3189

Query: 156  DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
             +     + A ++Y+SG+TG  KGV + H         +     L G  D V+      F
Sbjct: 3190 AIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGL-GVGDRVLQFTTFSF 3248

Query: 216  HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVR 274
             VF     L+  L  G  VV  G  D       +E        V+      L        
Sbjct: 3249 DVFVEE--LFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED 3306

Query: 275  KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG 334
                +SLK +  G   L  +L    Q+   G  ++  YG TE    ++    +   + + 
Sbjct: 3307 AHRCTSLKRIVCGGEALPADLQ---QQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAV 3363

Query: 335  SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
              G  +A     I+   +L+P+P   LGE+++ G
Sbjct: 3364 PIGRPIANRACYILD-GSLEPVPVGALGELYLGG 3396

Length = 5163

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 29/197 (14%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA---STANPVYTVSE--L 88
            + V+   R  G T  D  +I AP  + + + FLG +  G IA   S   P     +  +
Sbjct: 45  TLNVAEELRRHGSTG-DRAVILAPQGLEYIVAFLGALQAGLIAVPLSV--PQGGAHDERV 101

Query: 89  SKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL- 147
           S  ++D++P +V+T   + D V +             V+       +  ++   DL++L 
Sbjct: 102 SAVLRDTSPSVVLTTSAVVDDVTEY------------VAPQPG-QSAPPVIEV-DLLDLD 147

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMIS--AHQELVGE 203
           S   +D     +     A L Y+SG+T    GV+++H+N IA    LM         V  
Sbjct: 148 SPRGSDARPRDL--PSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPP 205

Query: 204 LDHVVLCVLPMFHVFGL 220
            D  V+  LP +H  GL
Sbjct: 206 PDTTVVSWLPFYHDMGL 222

Length = 578

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 31/286 (10%)

Query: 36   KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
            +++H  R  G+     V I A  S    +  L ++  G      +P Y    L+  + DS
Sbjct: 1168 RLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADS 1227

Query: 96   NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 155
              +L++T   L ++     LP       + VS+  L           D + L    +  P
Sbjct: 1228 GVELLLTQSHLLER-----LPQA-----EGVSAIAL-----------DSLHLDSWPSQAP 1266

Query: 156  DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 215
             + +   + A ++Y+SG+TG  KGV  TH         + A   L      V++   P+ 
Sbjct: 1267 GLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDD--SDVLMQKAPI- 1323

Query: 216  HVFGLSVI-LYDQLQKGNCVVSMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 271
              F +SV   +  L  G  +V  G     D +     +++Y VT    VPP++       
Sbjct: 1324 -SFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382

Query: 272  LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET 317
            L      +SL+ + SG   L  EL     + +P   +   YG TET
Sbjct: 1383 LAA--ACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTET 1426

Length = 4334

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 74/371 (19%), Positives = 140/371 (37%), Gaps = 65/371 (17%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 60
           +  +G     +Y         P+  +++  +  V  ++ + R LG+   D V  + PN  
Sbjct: 94  LRAAGTEPALLYVDETH---EPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIP 150

Query: 61  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVK 111
              +  L   ++GAI S+ +P +    +  + +   PKL+ TV             DKV 
Sbjct: 151 QAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVA 210

Query: 112 DL--NLPAV-------LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV--SVK 160
           ++   LP +        LG ++          + KI    DL + + +      V   + 
Sbjct: 211 EVRKELPTLRAVVHIPYLGPRETE--------APKIDGALDLEDFTAAAQAAELVFEQLP 262

Query: 161 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-------GE-LDHVVLCVL 212
                 +L+SSGTTG+ K ++ +     A   ++   +E         G+ L +      
Sbjct: 263 FDHPLWILFSSGTTGLPKCIVHS-----AGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW 317

Query: 213 PMFH------VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILA 266
            M++        G +++LYD         S G     +     E+   T++      ++A
Sbjct: 318 MMWNWLVSGLATGATLVLYDG--------SPGFPATNVLWDIAERTGATLFGTSAKYVMA 369

Query: 267 LAKNSL--VRKFDISSLKLVGSGAAPL---GKELMEDCQKNIPGATIFQGYGMTETCAPI 321
             K  +   R  D+S+L+ V S  +PL   G   + D  K      +    G T+ C+  
Sbjct: 370 CRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIK--ADVWLASISGGTDICSCF 427

Query: 322 SLENPLVGVRR 332
           +  NP + V  
Sbjct: 428 AGANPTLPVHI 438

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 81/371 (21%), Positives = 142/371 (38%), Gaps = 88/371 (23%)

Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD- 94
            ++     L +  K  +++F   S      FLG +  G  A     V + +E  + + + 
Sbjct: 39  ALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG-HAYIPVDVSSPAERIEMIIEV 97

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           + P L+I   EL      L +  +                   +++  +L ++  +    
Sbjct: 98  AKPSLIIATEEL-----PLEILGI------------------PVITLDELKDIFATGNPY 134

Query: 155 -PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVLCVL 212
             D +VK  D   ++++SGTTG  KGV ++H N ++  + M+      + E         
Sbjct: 135 DFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFA--LPE--GPQFLNQ 190

Query: 213 PMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALR------AIEKYRVTVWWVVPPII- 264
             +  F LSV+ LY  L  G  +V++ K   +M          + +  + VW   P    
Sbjct: 191 APYS-FDLSVMDLYPTLASGGTLVALPK---DMTANFKQLFETLPQLPINVWVSTPSFAD 246

Query: 265 LALAKNSLVRKFD---ISSLK--------LVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
           + L    L   F+   + +L         L    A    K+L+E      P ATI+  YG
Sbjct: 247 MCL----LDPSFNEEHLPNLTHFLFCGEELPHKTA----KKLLE----RFPSATIYNTYG 294

Query: 314 MTE-TCAPISLE---------NPL-VGVRRSGSAGTLVAGVEAQIVSVD-TLKPLPPNQL 361
            TE T A  S+E           L +G  +  S           ++ +D     LP  + 
Sbjct: 295 PTEATVAVTSIEITDEMLDQYKRLPIGYAKPDS----------PLLIIDEEGTKLPDGEQ 344

Query: 362 GEIWVRGPNVT 372
           GEI + GP+V+
Sbjct: 345 GEIVISGPSVS 355

Length = 503

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 76/300 (25%), Positives = 127/300 (42%), Gaps = 50/300 (16%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGL 220
            + AL Y+SGTT   KGV+L H+    A LM +    L+  ++   V L  LPMFH  G 
Sbjct: 196 QSIALGYTSGTTASPKGVVLHHR---GAYLM-ALSNALIWGMNEGAVYLWTLPMFHCNGW 251

Query: 221 SVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 278
               +       C  +  + +   +    AI  Y VT  +   P++L    N+   +  +
Sbjct: 252 C---FTWTLAALCGTNICLRQVTAKAIYSAIANYGVT-HFCAAPVVLNTIVNAPKSETIL 307

Query: 279 SSLKLVG---SGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL---------ENP 326
              ++V    +GAAP    L    +K   G  +   YG++ET  P ++           P
Sbjct: 308 PLPRVVHVMTAGAAPPPSVLFAMSEK---GFRVTHTYGLSETYGPSTVCAWKPEWDSLPP 364

Query: 327 LVGVRRSGSAGTLVAGVEA-QIVSVDTLKPLPPN--QLGEIWVRGPNVTPVF--ELTVNC 381
               R +   G    G+E   +V   T+KP+P +   +GEI +RG  V   +      N 
Sbjct: 365 EEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANE 424

Query: 382 NLFS--YFRSND----HNDFFCKLF------------QVAPAELEGLLVSHPEILDAVVI 423
             F+  +F S D    H D + ++              ++  E+E ++ +HP +L+A V+
Sbjct: 425 EAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVV 484

Length = 567

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY-T 84
           +++     ++        LG+TK   V I+      +     G+ +   +A+T   VY  
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAAT---VYAN 179

Query: 85  VSE--LSKQVKDSNPKLVI----TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 138
           + E  L+  ++++  K ++     VP L   +K   +P   +   D + +S + +   ++
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS-VDTEGCRL 238

Query: 139 VSFHDLIELSGSVTD--IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 196
           V++ D++    S       ++     D A ++Y+SGTTG  KGV+ TH + + A ++   
Sbjct: 239 VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGS-LTAGILALE 297

Query: 197 HQ--ELVGEL--DHVVLCVLPMFHVFGLSV 222
            +  +L+G    D      LP+ H+    V
Sbjct: 298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGV 327

Length = 700

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 80/351 (22%), Positives = 139/351 (39%), Gaps = 58/351 (16%)

Query: 46  ITKKDVVLIFAPNSIHFPICFLGVIA---IGAIASTAN---PVYTVSELSKQVKDSNPKL 99
           +++   VL+ + N    P  +L V+A   +GAIA  A+   P+  +    +         
Sbjct: 63  VSRGSRVLVISDNG---PETYLSVLACAKLGAIAVMADGNLPIAAIERFCQ--------- 110

Query: 100 VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFH-DLIELSGSVTDIPDVS 158
            IT P            A L+    K++SS +      I     D+  ++       D +
Sbjct: 111 -ITDPA-----------AALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAA 158

Query: 159 VKQT-------DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV--- 208
                      D  A++++SGTTG  K V+L ++ F A   ++    E +  +  VV   
Sbjct: 159 SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQK--EGLNWVTWVVGET 216

Query: 209 -LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 267
               LP  H+ GL  IL   +  G CV   G  +    L  +    V    +VP ++  L
Sbjct: 217 TYSPLPATHIGGLWWILTCLMHGGLCVT--GGENTTSLLEILTTNAVATTCLVPTLLSKL 274

Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ-KNIPGATIFQGYGMTET-CAPISL-- 323
                     + SL+LVG G +   + +  D +     G    Q YG++ET C  + L  
Sbjct: 275 VSELKSANATVPSLRLVGYGGS---RAIAADVRFIEATGVRTAQVYGLSETGCTALCLPT 331

Query: 324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN-----QLGEIWVRGP 369
           ++  +    +G+ G    GV+  + + D + P  P        G +W++ P
Sbjct: 332 DDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSP 382

Length = 540

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 21/108 (19%)

Query: 271 SLVRKFDISSLKLVGSGAAPLG---KELMEDCQKNIPGATIFQGYGMTET--CAPISLEN 325
           S  R      ++ + SG  PL    +E +     N+    + QG+G+TET  C  I    
Sbjct: 420 SAPRAVLGGRVRAMLSGGGPLSAATQEFV-----NVVFGMVIQGWGLTETVCCGGIQ--- 471

Query: 326 PLVGVRRSGSAGTLVAGVEAQIVSVD----TLKPLPPNQLGEIWVRGP 369
              G     + G L+ GVE +++  +    T  P P    GEI +RGP
Sbjct: 472 -RTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR---GEILLRGP 515

Length = 700

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 81/379 (21%), Positives = 126/379 (33%), Gaps = 77/379 (20%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAI-ASTANPV-------YTVSELSKQVKDS 95
           LG+   D V + A     F   F      G +      P+       Y +++L   +  +
Sbjct: 69  LGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESY-IAQLRGMLASA 127

Query: 96  NPKLVITVPELWDKVKD--LNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 153
            P  +IT  EL   V +     P + + S                        L  +   
Sbjct: 128 QPAAIITPDELLPWVNEATHGNPLLHVLSHA------------------WFKALPEADVA 169

Query: 154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV-- 211
           +P  +    D A L YSSG+T   +GVI+TH+  +A    IS     V   D    CV  
Sbjct: 170 LPRPT--PDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDR---CVSW 224

Query: 212 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILAL 267
           LP +H  GL   L   +     V  +   D        L  I + R T+    PP    L
Sbjct: 225 LPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTI-SYSPPFGYEL 283

Query: 268 ----AKNSLVRKFDISSLKLVGSGAAPLGKELMED-----CQKNIPGATIFQGYGMTETC 318
                 +  + + D+S  ++ G GA  +  +++                    YG+ E  
Sbjct: 284 CARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEAT 343

Query: 319 APISLENPLVGVR----------RSGSA----------------GTLVAGVEAQIVSVDT 352
             +S      G+             G A                G  + G E +I +   
Sbjct: 344 LAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAG 403

Query: 353 LKPLPPNQLGEIWVRGPNV 371
             PLP   +G I VRGP++
Sbjct: 404 -MPLPERVVGHICVRGPSL 421

Length = 579

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 99/463 (21%), Positives = 152/463 (32%), Gaps = 136/463 (29%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 98
            S R  GI   D  L+   N   F I F  ++ +G     A   +  SEL+       P 
Sbjct: 63  CSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPA 122

Query: 99  LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFH---------DLIELSG 149
           L+I          D      L    D +++      S ++V            D I    
Sbjct: 123 LLIA---------DRQHA--LFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHPA 171

Query: 150 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF---IAASLMI---SAHQELVGE 203
              D         + A    S G+TG  K +  TH ++   +  S+ I   +        
Sbjct: 172 --EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRY--- 226

Query: 204 LDHVVLCVLPMFHVFGLSV-----ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
                LC LP  H + +S      +       G  VV        +    IEK++V V  
Sbjct: 227 -----LCALPAAHNYPMSSPGALGVFL----AGGTVVLAPDPSATLCFPLIEKHQVNVTA 277

Query: 259 VVPP-IILALAKNSLV-RKFDISSLKLVGSGAAPLGKELMEDCQKNIP---GATIFQGYG 313
           +VPP + L L   +    +  ++SLKL+  G A L + L     + IP   G  + Q +G
Sbjct: 278 LVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETL----ARRIPAELGCQLQQVFG 333

Query: 314 MTE----------------TCA--PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 355
           M E                T    P+S ++                  E  +   D   P
Sbjct: 334 MAEGLVNYTRLDDSDERIFTTQGRPMSPDD------------------EVWVADADG-NP 374

Query: 356 LPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHN-------DFFCK--LFQ----- 401
           LP  ++G +  RGP     F          Y++S  HN        F+C   L       
Sbjct: 375 LPQGEVGRLMTRGPY---TFR--------GYYKSPQHNASAFDANGFYCSGDLVSIDPDG 423

Query: 402 ------------------VAPAELEGLLVSHPEILDA--VVIP 424
                             +A  E+E LL+ HP ++ A  V + 
Sbjct: 424 YITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSME 466

Length = 536

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 43/216 (19%), Positives = 71/216 (32%), Gaps = 60/216 (27%)

Query: 26  SFSMFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 84
           ++S    +V++ +H       +   D V I   NS  F   +L + +IGA+ +  N   +
Sbjct: 7   TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLS 66

Query: 85  VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 144
              L   +K S  K VI  P+                       + LI            
Sbjct: 67  GDPLIHCLKISGAKFVIVDPD---------------------DPAALI------------ 93

Query: 145 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 204
                                   Y+SGTTG+ KG  ++ +  +  S  +S    L    
Sbjct: 94  ------------------------YTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFP- 128

Query: 205 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 240
           D    C +P++H     + L   L  G  +    KF
Sbjct: 129 DRTYTC-MPLYHGTAAFLGLCYCLGSGGTLCLSRKF 163

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 23/151 (15%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V+ +++  R  G+   D V +  P S+   +    ++  GA     +  Y    L   ++
Sbjct: 493 VVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLE 552

Query: 94  DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 153
           D+ P L+IT  +   +  D+     L  +           + S+                
Sbjct: 553 DARPSLLITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQ---------------- 596

Query: 154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTH 184
            P         A ++++SG+TG  KGV++  
Sbjct: 597 -PH------HTAYIIFTSGSTGRPKGVMVGQ 620

Length = 1296

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 17/163 (10%)

Query: 163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISA---HQELVGELDHVVLCVLPMFHVFG 219
           D A ++ +SGTTG  KG +LT     AA+L  SA   H  L G      L  LP  H+ G
Sbjct: 36  DVALVVATSGTTGTPKGAMLT-----AAALTASADATHDRLGGPGQW--LLALPAHHIAG 88

Query: 220 LSVILYDQLQKGNCV---VSMGKFDIEMALRAIEKYRV-TVWWVVPPIILALAKNSLVRK 275
           L V++   +     V   VS G FD     RA+ +      +  + P+ LA A +     
Sbjct: 89  LQVLVRSVIAGSEPVELDVSAG-FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT 147

Query: 276 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 318
             ++ L  V  G  P    +++       G  + + YGM+ET 
Sbjct: 148 AALAELDAVLVGGGPAPAPVLDAAAA--AGINVVRTYGMSETS 188

Length = 358

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 16/209 (7%)

Query: 167 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 226
           +L +SGTTG  KGV    +   A  + ++            +   +PMFH  GL +++  
Sbjct: 179 VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLML- 237

Query: 227 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKL 283
            +  G  V++   FD E AL     +R   +  VP +   IL L      R   +  L++
Sbjct: 238 TIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARN-PLPQLRV 296

Query: 284 VGSGA----APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL 339
           V S        LG+  M+       G  ++ GYG TE     +L  P        + G  
Sbjct: 297 VMSSGDRLDPTLGQRFMDTY-----GDILYNGYGSTEVGIG-ALATPADLRDAPETVGKP 350

Query: 340 VAGVEAQIVSVDTLKPLPPNQLGEIWVRG 368
           VAG   +I+  +  +P+ P   G I+V G
Sbjct: 351 VAGCPVRILDRNN-RPVGPRVTGRIFVGG 378

Length = 516

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 22/98 (22%)

Query: 286 SGAAPLGKELMEDCQK--NIP-GATIFQGYGMTETCAPISL---ENPLVGVRRSG----- 334
           SG APL      D Q+  NI  GA I QGYG+TETCA  +    ++  VG  R G     
Sbjct: 427 SGGAPLSG----DTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVG--RVGPPLPC 480

Query: 335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
               LV+  E   +  D  KP+P    GEI + GP+VT
Sbjct: 481 CYVKLVSWEEGGYLISD--KPMPR---GEIVIGGPSVT 513

Length = 696

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 41 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 99
             LG+ + D V + A NSI F + FL ++ +GA+    NP     EL +Q+ D  P L
Sbjct: 18 LAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQEELQQQLADLQPDL 76

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 20/182 (10%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V +V+++   LG  K D + I  P ++H  I +L +I  G +  +    +  SE++ ++K
Sbjct: 218 VSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLK 277

Query: 94  DSNPKLVIT----------VPELWDKVKDLNLP-AVLLGSKDKVSSSGLISRSSKIVSFH 142
            S  K + T          +P L+ +V +   P A++L +  K     L       +S+ 
Sbjct: 278 ISKAKAIFTQDVIVRGGKSIP-LYSRVVEAKAPKAIVLPADGKSVRVKL---REGDMSWD 333

Query: 143 DLIELSGSVTDIPD--VSVKQTDAAA--LLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
           D +  +  +   PD   +V+Q   A   +L+SSGTTG  K +  T    + A+    AH 
Sbjct: 334 DFLARANGL-RRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL 392

Query: 199 EL 200
           ++
Sbjct: 393 DI 394

Length = 728

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 51/201 (25%)

Query: 50  DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT------VSELSKQVKDSNPKLVITV 103
           D V I AP  I +   F   I  G IA    P++          L   ++D+ P +V+T 
Sbjct: 93  DRVAILAPQGIDYVAGFFAAIKAGTIAV---PLFAPELPGHAERLDTALRDAEPTVVLTT 149

Query: 104 PELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD----- 156
               + V+    NLP +               R  +++          ++  IPD     
Sbjct: 150 TAAAEAVEGFLRNLPRL---------------RRPRVI----------AIDAIPDSAGES 184

Query: 157 ---VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLCV- 211
              V +   D + L Y+SG+T    GV +TH+      + MI +    +  LD     V 
Sbjct: 185 FVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILS----IDLLDRNTHGVS 240

Query: 212 -LPMFHVFGLSVILYDQLQKG 231
            LP++H  GLS+I +  +  G
Sbjct: 241 WLPLYHDMGLSMIGFPAVYGG 261

Length = 612

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 61/248 (24%), Positives = 98/248 (39%), Gaps = 44/248 (17%)

Query: 143  DLIELSG-SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF-------IAASLMI 194
            D   L+  S   +P +S+ Q   A L+Y+SG+TG  KGV+++H          I    M 
Sbjct: 2314 DAAALAAYSDAPLPFLSLPQ-HQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMR 2372

Query: 195  SAHQELVGELDHVVLCVLPMFHVFGL-----SVILYDQLQKGNCVV--SMGKFDIEMALR 247
            +   EL               H + +     S  L   L  G  VV  + G++  E   +
Sbjct: 2373 ADDCEL---------------HFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQ 2417

Query: 248  AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 307
             I + +V++    P     LA+  L  + +   +++  +G   L  E ++  ++      
Sbjct: 2418 LIREQQVSILGFTPSYGSQLAQ-WLAGQGEQLPVRMCITGGEALTGEHLQRIRQAFAPQL 2476

Query: 308  IFQGYGMTETC-------APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ 360
             F  YG TET        AP  LE     V      G +V    A I+  D L  +P   
Sbjct: 2477 FFNAYGPTETVVMPLACLAPEQLEEGAASV----PIGRVVGARVAYILDAD-LALVPQGA 2531

Query: 361  LGEIWVRG 368
             GE++V G
Sbjct: 2532 TGELYVGG 2539

Length = 4334

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
           ++LS +++D +   +    E  +K+KDL         K+K    G+      I+ F D+ 
Sbjct: 244 NDLSNELEDISLGPLEYDKEKLEKIKDL---------KEKAKKLGI-----SIILFDDMT 289

Query: 146 ELSGSVTDIPDVSVKQTDA---AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
           +         +  ++  D     +++Y+SGT+G  KGV+L++KN     + +  H     
Sbjct: 290 K-----NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK 344

Query: 203 ELDHVVLCVLPMFHVF 218
                 L  LP+ H++
Sbjct: 345 YNPKTHLSYLPISHIY 360

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02654	666	acetate-CoA ligase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.96
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.94
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.92
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.84
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.69
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.62
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.25
PRK09188	365	serine/threonine protein kinase; Provisional	98.6
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.65
PLN02620	612	indole-3-acetic acid-amido synthetase	97.36
PLN02247	606	indole-3-acetic acid-amido synthetase	97.31
PLN02249	597	indole-3-acetic acid-amido synthetase	97.16
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	96.23
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	91.79
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	91.48
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	83.81
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	82.04
PRK08315	559	AMP-binding domain protein; Validated	80.1

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.8e-67  Score=494.53  Aligned_cols=393  Identities=39%  Similarity=0.617  Sum_probs=337.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcC--CCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLG--ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL   99 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~g--i~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~   99 (424)
                      .+.+||+|+++++.|+|..|.++|  +++||+|++++||++++..+++||..+|+++.++||.+.+.++.+.++.+++++
T Consensus        43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~ki  122 (537)
T KOG1176|consen   43 GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKL  122 (537)
T ss_pred             CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeE
Confidence            367999999999999999999876  899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccchHHHhcCC----CCeEEEecCCCccccccccCCCcccc-hhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCC
Q 014435          100 VITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVS-FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT  174 (424)
Q Consensus       100 ii~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  174 (424)
                      ++++.+....+....    ...+.+.......   .......... +..+.....+  .. ......+|+++++||||||
T Consensus       123 if~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~dd~~~il~SSGTT  196 (537)
T KOG1176|consen  123 IFVDEDFYDKISEATSKLALKIIVLTGDEGVI---SISDLVEDLDAFEDLMPEGLP--DG-IRPVSEDDTAAILYSSGTT  196 (537)
T ss_pred             EEEcCchHHHHHHHHhhcCCceEEEecccCcc---ccccccccccchhhccccCCC--cc-cccCCCCCeEEEecCCCCC
Confidence            999999988876654    3333333321000   0011111111 4443333321  11 4556679999999999999


Q ss_pred             CCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccc
Q 014435          175 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV  254 (424)
Q Consensus       175 G~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~  254 (424)
                      |.||+|++||+++..+............  .++.++.+|++|.+|+...+...+..|++++..+.+++..+++.+++|++
T Consensus       197 g~PKgV~lsHr~~~~~~~~~~~~~~~~~--~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykv  274 (537)
T KOG1176|consen  197 GLPKGVVLSHRNLIANTLSIKIGWELTS--DDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKV  274 (537)
T ss_pred             CCCceEEEecHHHHHHHHHhhhcccCCC--CceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCE
Confidence            9999999999999888655444444433  59999999999999998777778899999999999999999999999999


Q ss_pred             eEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCC
Q 014435          255 TVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG  334 (424)
Q Consensus       255 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  334 (424)
                      |++.++|.++..|++.+.....+++++|.+.+||+++++++.+++++.++...+.+.||+||+++.++.+..... .+++
T Consensus       275 t~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~  353 (537)
T KOG1176|consen  275 THLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE-RKPG  353 (537)
T ss_pred             EEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc-Cccc
Confidence            999999999999999987777899999999999999999999999999987999999999999988887666643 6899


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      ++|.++++++.+|.+ ++|+.+++++.||||++|+.++.||             ++||+|||+|++|+||++       |
T Consensus       354 svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~Kd  432 (537)
T KOG1176|consen  354 SVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKD  432 (537)
T ss_pred             ccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhh
Confidence            999999988888888 8999999999999999999999999             399999999999999998       4


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       |+.+|++|+|.|||++|.+||.|.||||||
T Consensus       433 lIk~~G~qv~P~EiE~vL~~hP~V~eaaVvg  463 (537)
T KOG1176|consen  433 LIKYGGEQVSPAEIEAVLLTHPDVLEAAVVG  463 (537)
T ss_pred             heeeCCEEeCHHHHHHHHHhCCCccEEEEEc
Confidence             999999999999999999999999999997

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-64  Score=444.15  Aligned_cols=393  Identities=25%  Similarity=0.338  Sum_probs=337.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .+.++||+|+.+.++++|+.|...|+++||||++..||+++|+.+++||+++|.+.+++||.+...+++..|++.+++++
T Consensus        74 eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l  153 (596)
T KOG1177|consen   74 EGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKAL  153 (596)
T ss_pred             ccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEE
Confidence            44569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccch-----HHHhcCCC------------------CeEEEecCCCccccccccCCCcccchhhhhhccCCCC----C
Q 014435          101 ITVPELW-----DKVKDLNL------------------PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT----D  153 (424)
Q Consensus       101 i~~~~~~-----~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  153 (424)
                      ++.+.+.     +.+.++..                  .-++...++        ....+...+++++.......    .
T Consensus       154 ~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed--------~~~~Ga~~~sev~~~~s~~~~a~l~  225 (596)
T KOG1177|consen  154 FAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED--------HPLPGAFLLSEVLKAASKEERAKLA  225 (596)
T ss_pred             EccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC--------CcCCCceehHHHHHhcchHHHHHHH
Confidence            9986433     22322211                  112222211        22334455666665544311    1


Q ss_pred             CCCCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCce
Q 014435          154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  233 (424)
                      .......|||++.|.|||||||.||++.+||.++++++.......++..  ++++++..|++|.+|.....++++..|++
T Consensus       226 ~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e--~~~i~~~~Pl~H~~G~~~~~ma~l~~gat  303 (596)
T KOG1177|consen  226 DMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNE--KHRICIPNPLYHCFGCVLGVMAALMHGAT  303 (596)
T ss_pred             hhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCc--ceEEEecCchHHHHHHHHHHHHHHHhCcE
Confidence            1233456899999999999999999999999999999888877776644  48999999999999988899999999999


Q ss_pred             EEecC-CCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecc
Q 014435          234 VVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  312 (424)
Q Consensus       234 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y  312 (424)
                      ++++. .|++.+++++|+++++|.++++|+++..|++.+.....+++++|..+.||+++|+++.+.+.+...=..+...|
T Consensus       304 ~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~Y  383 (596)
T KOG1177|consen  304 IVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAY  383 (596)
T ss_pred             EEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEe
Confidence            99974 59999999999999999999999999999999998999999999999999999999999999976334577789


Q ss_pred             cCccCCCceeecCCCC-CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhc
Q 014435          313 GMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELT  378 (424)
Q Consensus       313 G~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~  378 (424)
                      |+||+++..+.....+ .+.+..++|+.+++.+..|+| +.|..++.|..|||+++|.+.+.+|             |.|
T Consensus       384 G~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW  462 (596)
T KOG1177|consen  384 GLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRW  462 (596)
T ss_pred             eccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechhheeecCCcccchhhcccccc
Confidence            9999998777654443 356677999999999999999 8999999999999999999999999             899


Q ss_pred             cccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          379 VNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       379 ~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++|||+|.++++|.+       | |..+|++|+|.|||+.|.+||.|.+|.|+|
T Consensus       463 ~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVG  516 (596)
T KOG1177|consen  463 YDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVG  516 (596)
T ss_pred             eecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEc
Confidence            999999999999988       4 778999999999999999999999999997

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=5.4e-63  Score=463.00  Aligned_cols=379  Identities=25%  Similarity=0.381  Sum_probs=325.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      +++||+||.+.++++|+.|++ .|+ +||||++++|+.++.++++|||+++|++.+|+.+.++++.+...+++++++++|
T Consensus        39 ~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vi  117 (528)
T COG0365          39 RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLI  117 (528)
T ss_pred             eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEE
Confidence            679999999999999999987 568 999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCCe--------EEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCC
Q 014435          102 TVPELWDKVKDLNLPA--------VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT  173 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  173 (424)
                      +++......+......        +++....            . ..|.+......  ...+......+|+++++|||||
T Consensus       118 t~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~------------~-~~~~~~~~~~~--~~~~~~~~~~~dpl~ilYTSGT  182 (528)
T COG0365         118 ADDGTFRNGKEIALLEDADAVLSSVVVVPRL------------G-LWYDEAVEKAS--EKFEFEPLPADDPLFLLYTSGT  182 (528)
T ss_pred             EecccccccccccchhHHHHhhcceEEeccc------------c-ccHHHHhhccC--CCCCccccCCCCeEEEEeCCCC
Confidence            9988777655544321        2222111            1 56666665444  3333445789999999999999


Q ss_pred             CCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC--C-CHHHHHHHHH
Q 014435          174 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--F-DIEMALRAIE  250 (424)
Q Consensus       174 TG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~-~~~~~~~~i~  250 (424)
                      ||+||+|+++|+.+............... ++|++++..+..|+.|.++.++.+|..|+++++.+.  + ++..+++.|+
T Consensus       183 TG~PKgv~H~~gg~l~~~~~~~~~~~~~~-~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie  261 (528)
T COG0365         183 TGKPKGIVHSHGGYLVEHRLTAKFHGDLL-PGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALE  261 (528)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHhhCCC-CCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHH
Confidence            99999999999987776655544333322 569999999999999999889999999999998853  2 4999999999


Q ss_pred             HccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCc
Q 014435          251 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV  330 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  330 (424)
                      ++++|.+++.|+.++.|.+....+..++++||.+.+.|||++++.++++.+.+ |+.+.+.||+||++++.....+   .
T Consensus       262 ~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~---~  337 (528)
T COG0365         262 KYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP---P  337 (528)
T ss_pred             HhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC---C
Confidence            99999999999999999998766677899999999999999999999999999 5999999999999966555544   3


Q ss_pred             cCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecC--Ccchhh------------hhccccCceEEEecCCce---
Q 014435          331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--NVTPVF------------ELTVNCNLFSYFRSNDHN---  393 (424)
Q Consensus       331 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy------------~~~~~TgD~g~~~~~g~~---  393 (424)
                      ...++.|+|+||+++.|+|. +|++++.|+ |+|+++.+  .++.+|            ..||.|||.+++|+||++   
T Consensus       338 ~~~g~~g~p~pG~~~~vvdd-~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~  415 (528)
T COG0365         338 VKNGSSGLPLPGYAVRRVDD-EGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLH  415 (528)
T ss_pred             cCCCCCCCCCCCceeEEECC-CCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEE
Confidence            34555699999999999995 599999999 99999987  667777            228999999999999988   


Q ss_pred             ----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                          | |++.|++|.+.|||++|.+||.|.||+|||
T Consensus       416 GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg  451 (528)
T COG0365         416 GRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVG  451 (528)
T ss_pred             eeccceEeccCeeccHHHHHHHHHhCcceeeeEEEe
Confidence                4 999999999999999999999999999997

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.7e-62  Score=474.79  Aligned_cols=389  Identities=35%  Similarity=0.509  Sum_probs=326.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEcc
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP  104 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~  104 (424)
                      +||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+||.+...++.++++.+++++++++.
T Consensus        39 ~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~  118 (534)
T COG0318          39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSA  118 (534)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchHHHhcCCCC----eEEEecCCCccccccccCCCcc-cchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcch
Q 014435          105 ELWDKVKDLNLP----AVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG  179 (424)
Q Consensus       105 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  179 (424)
                      ++..........    ..+.....         ..... ..+++....... .........++|+++++|||||||.||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~yTSGTTG~PKg  188 (534)
T COG0318         119 EFAALLEAVAEALPVVLVVLLVGD---------ADDRLPITLEALAAEGPG-PDADARPVDPDDLAFLLYTSGTTGLPKG  188 (534)
T ss_pred             cchhHHHHHhccCCcceEEEeccc---------ccccccccHHHHhhccCC-cccccCCCCCCCEEEEEeCCCCCCCCCE
Confidence            754444333211    11111110         00000 234444322211 1122222678999999999999999999


Q ss_pred             hhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHHHccceEE
Q 014435          180 VILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVW  257 (424)
Q Consensus       180 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~  257 (424)
                      |++||+++..+..............++++++++|++|.+|+...++..+..|+++++.+  .+++..++..+.++++|++
T Consensus       189 v~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~  268 (534)
T COG0318         189 VVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVL  268 (534)
T ss_pred             eEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEE
Confidence            99999999988777766655212344889999999999999877777799999999998  5999999999999999999


Q ss_pred             EechHHHHHHHhccccccCCCCC-eeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcc
Q 014435          258 WVVPPIILALAKNSLVRKFDISS-LKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA  336 (424)
Q Consensus       258 ~~~p~~~~~l~~~~~~~~~~~~~-lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~  336 (424)
                      .++|.++..++++......++++ +|.++.||+++++++++++++.|+...+++.||+||+++.++...........+++
T Consensus       269 ~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~  348 (534)
T COG0318         269 SGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSV  348 (534)
T ss_pred             ecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcc
Confidence            99999999999998877766666 99999999999999999999999656899999999998877776555201356777


Q ss_pred             ccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------h-hccccCceEEEecCCce-------e-e
Q 014435          337 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------E-LTVNCNLFSYFRSNDHN-------D-F  395 (424)
Q Consensus       337 G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~-~~~~TgD~g~~~~~g~~-------d-i  395 (424)
                      |+|.|+++++|+|+++++++| |++|||+++||+++.||            + +||+|||+|++|++|++       | |
T Consensus       349 G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I  427 (534)
T COG0318         349 GRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLI  427 (534)
T ss_pred             cccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEE
Confidence            999999999999976666777 99999999999999999            1 89999999999999988       4 9


Q ss_pred             EeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          396 FCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       396 ~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +.+|++|+|.|||+++.+||.|.+|+|+|
T Consensus       428 ~~gG~ni~p~eiE~~l~~~~~V~~aavvg  456 (534)
T COG0318         428 ISGGENIYPEEIEAVLAEHPAVAEAAVVG  456 (534)
T ss_pred             EeCCeEECHHHHHHHHHhCCCcceEEEEe
Confidence            99999999999999999999999999986

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-61  Score=478.14  Aligned_cols=396  Identities=18%  Similarity=0.248  Sum_probs=312.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHH
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHL---GITKK-----------DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE   87 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~---gi~~g-----------~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~   87 (424)
                      ++.+||+||.+++.++|++|.+.   |+++|           |+|+|+++|+++|+++.+||+++|++.+|+++.++.++
T Consensus        89 ~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~e  168 (746)
T PTZ00342         89 QNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDV  168 (746)
T ss_pred             ceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHH
Confidence            46899999999999999999974   99998           99999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEcccchHHHhcCC-----CCeEEEecCCCccc-----------------cccc-------------
Q 014435           88 LSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSS-----------------SGLI-------------  132 (424)
Q Consensus        88 i~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------------~~~~-------------  132 (424)
                      +.++++++++++++++.+....+....     .+.++.........                 ....             
T Consensus       169 l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (746)
T PTZ00342        169 IVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSN  248 (746)
T ss_pred             HHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999877766554322     12222222110000                 0000             


Q ss_pred             ----------------------------cCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhhcH
Q 014435          133 ----------------------------SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH  184 (424)
Q Consensus       133 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~  184 (424)
                                                  ........++++.....  ...+.....++|++.|+|||||||.||||++||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH  326 (746)
T PTZ00342        249 ELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT--TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSN  326 (746)
T ss_pred             ccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc--cCCCCCCCCccceEEEEEcCCCCCCCCEEEEcc
Confidence                                        00001112222222111  111223456899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEechHHH
Q 014435          185 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII  264 (424)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~  264 (424)
                      +++.+.+..............+++++++|++|.+++. ..+.++..|+++++.+. ++..+.+.|+++++|+++++|.++
T Consensus       327 ~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~  404 (746)
T PTZ00342        327 KNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERV-IAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVF  404 (746)
T ss_pred             HHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHH
Confidence            9999887654332111122348999999999999995 56778999999998765 899999999999999999999999


Q ss_pred             HHHHhc--------cccc----------------------------------cCCCCCeeEEEecCCCCCHHHHHHHHHh
Q 014435          265 LALAKN--------SLVR----------------------------------KFDISSLKLVGSGAAPLGKELMEDCQKN  302 (424)
Q Consensus       265 ~~l~~~--------~~~~----------------------------------~~~~~~lr~~~~~g~~~~~~~~~~~~~~  302 (424)
                      +.|.+.        +...                                  ....+++|.+++||+++++++.++|+..
T Consensus       405 ~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~  484 (746)
T PTZ00342        405 NRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVL  484 (746)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHh
Confidence            988652        1000                                  0012689999999999999999999988


Q ss_pred             CCCCeEEecccCccCCCceeecCCCCCccCCCcccccc-CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------
Q 014435          303 IPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------  375 (424)
Q Consensus       303 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------  375 (424)
                      + ++.+++.||+||+++.++...+.  ....+++|.|+ |+++++|+|.+++...+.++.|||+++||+++.||      
T Consensus       485 ~-g~~i~~gYGlTEt~~~~~~~~~~--~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~  561 (746)
T PTZ00342        485 L-NVNYYQGYGLTETTGPIFVQHAD--DNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQ  561 (746)
T ss_pred             c-CCCEEEeeccCcccceeeeccCC--CCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhh
Confidence            8 69999999999998766665543  46778999998 99999999865555555567899999999999999      


Q ss_pred             -------hhccccCceEEEecCCce-------e-eE-eeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          376 -------ELTVNCNLFSYFRSNDHN-------D-FF-CKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 -------~~~~~TgD~g~~~~~g~~-------d-i~-~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                             ++||+|||+|++++||++       | |+ .+|++|+|.+||++|.+||.|.+|+|+|
T Consensus       562 T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG  626 (746)
T PTZ00342        562 TKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYG  626 (746)
T ss_pred             hhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEc
Confidence                   689999999999999988       3 77 4799999999999999999999999997

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.1e-61  Score=480.21  Aligned_cols=396  Identities=19%  Similarity=0.265  Sum_probs=308.6

Q ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEc
Q 014435           24 DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV  103 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~  103 (424)
                      .+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++
T Consensus        79 ~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~  158 (666)
T PLN02614         79 WQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVE  158 (666)
T ss_pred             EeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchHHHhcCC------CCeEEEecCCCcccc-ccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          104 PELWDKVKDLN------LPAVLLGSKDKVSSS-GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       104 ~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++....+....      .+.++.......... ..........++++++..... ...+.....++|+++|+|||||||.
T Consensus       159 ~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~I~yTSGTTG~  237 (666)
T PLN02614        159 EKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEG-KQYDLPIKKKSDICTIMYTSGTTGD  237 (666)
T ss_pred             HHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhccc-CCCCCCCCCCCceEEEEEcCCCCCC
Confidence            76554442211      112222211100000 000001123456665543321 1111223467999999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhh---hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHcc
Q 014435          177 SKGVILTHKNFIAASLMISAHQE---LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR  253 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~  253 (424)
                      ||||++||+++...+........   .....++++++++|++|.++.. .....+..|+++++.+ .++..+++.+++++
T Consensus       238 PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~  315 (666)
T PLN02614        238 PKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELK  315 (666)
T ss_pred             CcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhC
Confidence            99999999999887655433221   1123458999999999999985 4566688999998875 58999999999999


Q ss_pred             ceEEEechHHHHHHHhcccc---------------------------------cc-----------CCC-CCeeEEEecC
Q 014435          254 VTVWWVVPPIILALAKNSLV---------------------------------RK-----------FDI-SSLKLVGSGA  288 (424)
Q Consensus       254 ~t~~~~~p~~~~~l~~~~~~---------------------------------~~-----------~~~-~~lr~~~~~g  288 (424)
                      +|+++++|++++.+......                                 ..           ..+ +++|.+++||
T Consensus       316 ~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gg  395 (666)
T PLN02614        316 PTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGA  395 (666)
T ss_pred             CeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcC
Confidence            99999999999887642110                                 00           011 6899999999


Q ss_pred             CCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCC--CccCCCCCceeEEE
Q 014435          289 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT--LKPLPPNQLGEIWV  366 (424)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~--~~~~~~g~~Gel~v  366 (424)
                      +++++.+ ++|.+.++++++++.||+||+++..+...+.. ..+.+++|+|+|+++++|+|.++  +.+++.|+.|||++
T Consensus       396 a~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~v  473 (666)
T PLN02614        396 APLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICI  473 (666)
T ss_pred             CCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEE
Confidence            9999875 56667675689999999999876554433321 23568999999999999998333  47889999999999


Q ss_pred             ecCCcchhh------------hhccccCceEEEecCCce-------e-eEe-eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          367 RGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FFC-KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       367 ~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~~-~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|+.++.||            ++||+|||+|++|+||++       | |+. +|++|+|.+||++|.+||.|.+|+|+|
T Consensus       474 rGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g  552 (666)
T PLN02614        474 RGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYG  552 (666)
T ss_pred             cCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEe
Confidence            999999999            689999999999999988       3 775 799999999999999999999999987

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.6e-60  Score=472.92  Aligned_cols=396  Identities=19%  Similarity=0.249  Sum_probs=306.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        76 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~  155 (660)
T PLN02861         76 VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (660)
T ss_pred             eEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcC------CCCeEEEecCCCcccc-ccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          103 VPELWDKVKDL------NLPAVLLGSKDKVSSS-GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       103 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      +++....+...      ..+.++.......... ..........++++++.....  ........++|+++|+|||||||
T Consensus       156 ~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dd~a~i~yTSGTTG  233 (660)
T PLN02861        156 QESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL--DCELPPKQKTDICTIMYTSGTTG  233 (660)
T ss_pred             CHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc--cCCCCccCCCceEEEEecCCCCC
Confidence            87665544321      1222222211100000 000001123456655543321  11222346899999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhh---ccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHc
Q 014435          176 VSKGVILTHKNFIAASLMISAHQEL---VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY  252 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  252 (424)
                      .||||++||+++...+.........   ....++++++++|++|.++... .+.++..|+++++.+ +++..+++.|+++
T Consensus       234 ~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~  311 (660)
T PLN02861        234 EPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQAL  311 (660)
T ss_pred             CCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHh
Confidence            9999999999998876654433221   1134589999999999999864 455799999998874 5899999999999


Q ss_pred             cceEEEechHHHHHHHhcc-------------------------------------ccccC-------CC-CCeeEEEec
Q 014435          253 RVTVWWVVPPIILALAKNS-------------------------------------LVRKF-------DI-SSLKLVGSG  287 (424)
Q Consensus       253 ~~t~~~~~p~~~~~l~~~~-------------------------------------~~~~~-------~~-~~lr~~~~~  287 (424)
                      ++|+++++|.+++.+.+..                                     .....       .+ +++|.+++|
T Consensus       312 ~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~G  391 (660)
T PLN02861        312 KPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSG  391 (660)
T ss_pred             CCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEEC
Confidence            9999999999999886410                                     00000       11 589999999


Q ss_pred             CCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeC-CCC-ccCCCCCceeEE
Q 014435          288 AAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV-DTL-KPLPPNQLGEIW  365 (424)
Q Consensus       288 g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~-~~~~~g~~Gel~  365 (424)
                      |+++++++. +|.+.++...+++.||+||+++.++...... ..+.+++|+|+++++++|+|. ++| ...+.++.|||+
T Consensus       392 gapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~  469 (660)
T PLN02861        392 AAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEIC  469 (660)
T ss_pred             CCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEE
Confidence            999999975 4666664457999999999876655433321 235689999999999999983 334 344566789999


Q ss_pred             EecCCcchhh------------hhccccCceEEEecCCce-------e-eEe-eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          366 VRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FFC-KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       366 v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~~-~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++|+.++.||            ++||+|||+|++|+||++       | |+. +|++|+|.+||++|.+||.|.+|+|+|
T Consensus       470 vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G  549 (660)
T PLN02861        470 LRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYG  549 (660)
T ss_pred             EcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEe
Confidence            9999999999            589999999999999988       3 775 799999999999999999999999986

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=5.8e-59  Score=458.27  Aligned_cols=394  Identities=36%  Similarity=0.583  Sum_probs=325.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           24 DPSFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      ++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++++
T Consensus        66 ~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~  145 (560)
T PLN02574         66 SISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFT  145 (560)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEE
Confidence            69999999999999999998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhh
Q 014435          103 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL  182 (424)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  182 (424)
                      +.+....+.......+.+.......     ........+++++....  ...+.....++++++++|||||||.||+|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~  218 (560)
T PLN02574        146 SPENVEKLSPLGVPVIGVPENYDFD-----SKRIEFPKFYELIKEDF--DFVPKPVIKQDDVAAIMYSSGTTGASKGVVL  218 (560)
T ss_pred             CHHHHHHHHhcCCcEEecCcccccc-----cCccCcccHHHHhhcCC--cccccCCCCcCCEEEEEcCCCccCCCcEEEE
Confidence            9887766655433332221110000     00112233444443322  1222334467899999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhh---hhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEe
Q 014435          183 THKNFIAASLMISAHQ---ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV  259 (424)
Q Consensus       183 t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~  259 (424)
                      +|+++...+..+....   ......+++++..+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.+
T Consensus       219 sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~  298 (560)
T PLN02574        219 THRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPV  298 (560)
T ss_pred             eHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEec
Confidence            9999987765443211   1112234888999999999999777788889999999998899999999999999999999


Q ss_pred             chHHHHHHHhcccc-ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcccc
Q 014435          260 VPPIILALAKNSLV-RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGT  338 (424)
Q Consensus       260 ~p~~~~~l~~~~~~-~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~  338 (424)
                      +|+++..|.+.... ...+++++|.+++||+++++++++++.+.++++.+++.||+||++.+.+...........+++|+
T Consensus       299 ~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~  378 (560)
T PLN02574        299 VPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGL  378 (560)
T ss_pred             CCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceee
Confidence            99999999887543 34568899999999999999999999999988999999999998865543222222345678999


Q ss_pred             ccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e-eEe
Q 014435          339 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D-FFC  397 (424)
Q Consensus       339 ~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d-i~~  397 (424)
                      |.++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+|+++++|.+       | +++
T Consensus       379 ~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~  458 (560)
T PLN02574        379 LAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY  458 (560)
T ss_pred             eCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEE
Confidence            9999999999988899999999999999999999999             579999999999999987       3 999


Q ss_pred             eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          398 KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       398 ~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++|+|.+||++|.+||+|.+++|+|
T Consensus       459 ~G~~v~~~eiE~~l~~~~~V~~~~v~~  485 (560)
T PLN02574        459 KGFQIAPADLEAVLISHPEIIDAAVTA  485 (560)
T ss_pred             CCEEECHHHHHHHHHhCCCcceEEEEc
Confidence            999999999999999999999999985

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=7.9e-60  Score=471.29  Aligned_cols=394  Identities=21%  Similarity=0.255  Sum_probs=314.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +.+||+||.++++++|++|+++|+++||+|+++++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        77 ~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~  156 (651)
T PLN02736         77 KWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFC  156 (651)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEE
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCC-----CCeEEEecCCCccccc-cccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          103 VPELWDKVKDLN-----LPAVLLGSKDKVSSSG-LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       103 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      +++....+....     .+.++........... ..........+++++..... ...+.....++|+++|+|||||||.
T Consensus       157 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~  235 (651)
T PLN02736        157 VPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRS-SPQPFRPPKPEDVATICYTSGTTGT  235 (651)
T ss_pred             CHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhccc-CCCCCCCCCccceEEEEEcCCCCCC
Confidence            987665544321     1222222110000000 00011223456666543321 1112233468999999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|++||+++...+.........  ..++++++.+|++|.+++. .++.++..|+++++.+. ++..+++.++++++|+
T Consensus       236 PKGV~lsh~~l~~~~~~~~~~~~~--~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~  311 (651)
T PLN02736        236 PKGVVLTHGNLIANVAGSSLSTKF--YPSDVHISYLPLAHIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTI  311 (651)
T ss_pred             CcEEEEecHHHHHHHHHHHhccCC--CCCCEEEEeCCHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcE
Confidence            999999999999887766554444  3449999999999999996 67788999999988764 8899999999999999


Q ss_pred             EEechHHHHHHHhcccc----------------------------c-c------------CCC-CCeeEEEecCCCCCHH
Q 014435          257 WWVVPPIILALAKNSLV----------------------------R-K------------FDI-SSLKLVGSGAAPLGKE  294 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~----------------------------~-~------------~~~-~~lr~~~~~g~~~~~~  294 (424)
                      ++++|.++..+.+....                            . .            ..+ +++|.+++||++++++
T Consensus       312 ~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~  391 (651)
T PLN02736        312 FCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPD  391 (651)
T ss_pred             EecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHH
Confidence            99999999887653110                            0 0            011 4899999999999999


Q ss_pred             HHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCc---cCCCCCceeEEEecCCc
Q 014435          295 LMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK---PLPPNQLGEIWVRGPNV  371 (424)
Q Consensus       295 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~---~~~~g~~Gel~v~~~~~  371 (424)
                      +.+++++.+ ++++++.||+||+++.++...+.  ....+++|+|+|+++++|+|.+++.   ...+++.|||+++|+.+
T Consensus       392 ~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v  468 (651)
T PLN02736        392 VMEFLRICF-GGRVLEGYGMTETSCVISGMDEG--DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPII  468 (651)
T ss_pred             HHHHHHHHh-CCCeEEEechHHhchheeccCCC--CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCcc
Confidence            999999888 58999999999988766654433  4567899999999999999854432   22334579999999999


Q ss_pred             chhh-------------hhccccCceEEEecCCce-------e-eEe-eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          372 TPVF-------------ELTVNCNLFSYFRSNDHN-------D-FFC-KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       372 ~~gy-------------~~~~~TgD~g~~~~~g~~-------d-i~~-~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +.||             ++||+|||+|++++||.+       | |++ +|++|+|.+||++|.+||.|.+|+|+|
T Consensus       469 ~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g  543 (651)
T PLN02736        469 FKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG  543 (651)
T ss_pred             ccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEe
Confidence            9999             589999999999999988       3 876 799999999999999999999999986

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.1e-59  Score=456.42  Aligned_cols=384  Identities=21%  Similarity=0.243  Sum_probs=314.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.++++++|+.|.+.   +||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        44 ~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~  120 (539)
T PRK06334         44 GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLT  120 (539)
T ss_pred             CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEe
Confidence            5799999999999999999873   8999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCC-------CeEEEecCCCccccccccCCCcccchhhhhhcc----CCC----CCCCCCCCCCCCEEEE
Q 014435          103 VPELWDKVKDLNL-------PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS----GSV----TDIPDVSVKQTDAAAL  167 (424)
Q Consensus       103 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~i  167 (424)
                      +++....+.....       ..+.....  .          ....+.+.....    ...    .........+++++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i  188 (539)
T PRK06334        121 SKQLMQHLAQTHGEDAEYPFSLIYMEEV--R----------KELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVI  188 (539)
T ss_pred             hHHHHHHHhhhhhccccccccEEEEehh--h----------hhccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEE
Confidence            9877665543321       11111100  0          000000000000    000    0001123467899999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CCCHHHHH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMAL  246 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~  246 (424)
                      +|||||||.||+|.++|+++.............  ..++++++.+|++|.+|+...++.++..|+++++.. .+++..++
T Consensus       189 ~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~  266 (539)
T PRK06334        189 LFTSGTEKLPKGVPLTHANLLANQRACLKFFSP--KEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIV  266 (539)
T ss_pred             EECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCC--CCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHH
Confidence            999999999999999999998876655444333  345899999999999999766788899999998875 57999999


Q ss_pred             HHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCC
Q 014435          247 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP  326 (424)
Q Consensus       247 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~  326 (424)
                      +.|+++++|++.++|+++..|++........+++||.+++||+++++++.+++.+.++++.+++.||+||++++++....
T Consensus       267 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  346 (539)
T PRK06334        267 EMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTV  346 (539)
T ss_pred             HHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccC
Confidence            99999999999999999999988765555678999999999999999999999999988999999999999876665433


Q ss_pred             CCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------------hhccccCceEEEecCCc
Q 014435          327 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------------ELTVNCNLFSYFRSNDH  392 (424)
Q Consensus       327 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------------~~~~~TgD~g~~~~~g~  392 (424)
                      .. ....+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||              ++||+|||+|+++++|.
T Consensus       347 ~~-~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~  425 (539)
T PRK06334        347 NS-PKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGE  425 (539)
T ss_pred             CC-CCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCe
Confidence            21 3345689999999999999977789999999999999999999999              34999999999999998


Q ss_pred             e-------e-eEeeeeeeChhhHHHHHhcCCCccc------ceecC
Q 014435          393 N-------D-FFCKLFQVAPAELEGLLVSHPEILD------AVVIP  424 (424)
Q Consensus       393 ~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~------a~v~g  424 (424)
                      +       | |+++|++|+|.|||++|.+||+|.+      ++|+|
T Consensus       426 l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~  471 (539)
T PRK06334        426 LFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCG  471 (539)
T ss_pred             EEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEc
Confidence            7       3 9999999999999999999999998      56654

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=5.1e-59  Score=465.13  Aligned_cols=398  Identities=22%  Similarity=0.285  Sum_probs=316.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|+.|++.|+++||+|++++||++++++++|||+++|++++|+++.++.+++..++++++++++|
T Consensus       118 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li  197 (666)
T PLN02654        118 DASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVI  197 (666)
T ss_pred             eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcC------------------CCCeEEEecCCCcc-ccccccCCCcccchhhhhhccCCCCCCCCCCCCCC
Q 014435          102 TVPELWDKVKDL------------------NLPAVLLGSKDKVS-SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQT  162 (424)
Q Consensus       102 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (424)
                      +++......+..                  ....++........ .............++++.....  ...+.....++
T Consensus       198 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  275 (666)
T PLN02654        198 TCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYP--TKCEVEWVDAE  275 (666)
T ss_pred             EcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCC--CCCCceecCCC
Confidence            987643221110                  00011111110000 0000000001122333332211  11222335679


Q ss_pred             CEEEEecCCCCCCCcchhhhcHHHHHHHH-HHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC--
Q 014435          163 DAAALLYSSGTTGVSKGVILTHKNFIAAS-LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--  239 (424)
Q Consensus       163 ~~~~i~~TSGtTG~pK~v~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--  239 (424)
                      |+++|+|||||||.||+|+++|++++... .........  ..++++++..|+.|..|+...++.+|..|+++++.+.  
T Consensus       276 d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~  353 (666)
T PLN02654        276 DPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDY--KPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAP  353 (666)
T ss_pred             CceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCC--CCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCC
Confidence            99999999999999999999999876432 233333333  3449999999999999987778899999999998863  


Q ss_pred             --CCHHHHHHHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCC--CeEEeccc
Q 014435          240 --FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPG--ATIFQGYG  313 (424)
Q Consensus       240 --~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~yG  313 (424)
                        +++..+++.|+++++|+++++|++++.|.+....  ...++++||.++++|+++++++++++.+.+++  +.+.+.||
T Consensus       354 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg  433 (666)
T PLN02654        354 NYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW  433 (666)
T ss_pred             CCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccc
Confidence              4799999999999999999999999999886532  34568899999999999999999999998853  68999999


Q ss_pred             CccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEec--CCcchhh---------------h
Q 014435          314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG--PNVTPVF---------------E  376 (424)
Q Consensus       314 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy---------------~  376 (424)
                      +||+++......+.....+++++|+|++|++++|+| ++|+.++.++.|||++++  |.++.+|               +
T Consensus       434 ~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~  512 (666)
T PLN02654        434 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFA  512 (666)
T ss_pred             ccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCC
Confidence            999987666544332245678999999999999999 688999989999999999  6777777               5


Q ss_pred             hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          377 LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       377 ~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +||+|||+|++|+||.+       | |+++|++|+|.|||++|.+||+|.||+|+|
T Consensus       513 g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg  568 (666)
T PLN02654        513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG  568 (666)
T ss_pred             CEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence            89999999999999988       3 999999999999999999999999999986

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2e-59  Score=444.70  Aligned_cols=384  Identities=27%  Similarity=0.329  Sum_probs=305.8

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCe
Q 014435           19 LVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK   98 (424)
Q Consensus        19 ~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~   98 (424)
                      ...++.+||+|+.+++.++|++|++.|+.+||+|+|++.|+++|+++.+||+.+|++.||+.++.+++++.++|++++++
T Consensus        40 ~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~  119 (613)
T COG1022          40 LGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESK  119 (613)
T ss_pred             CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCce
Confidence            45778899999999999999999999997799999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcccchH-HHhcCCCCe-EEEec-------CCCcccccccc---CCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435           99 LVITVPELWD-KVKDLNLPA-VLLGS-------KDKVSSSGLIS---RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus        99 ~ii~~~~~~~-~~~~~~~~~-~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      +++++.+... .+....... .+...       ...........   ...+...+  ......  ......+..+||.|.
T Consensus       120 ~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~dDlat  195 (613)
T COG1022         120 VIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF--LIDSAG--LEGRIAPPKPDDLAT  195 (613)
T ss_pred             EEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh--hhcccc--cccccCCCCccceEE
Confidence            9999975433 333222110 00000       00000000000   00011111  011111  111224667999999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHH
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL  246 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~  246 (424)
                      |+|||||||.||||++||+|+.+++..+..... .....|+.++++|+.|++.........+..|+++..  ..++..++
T Consensus       196 iiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~-~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~--~~~~~~~~  272 (613)
T COG1022         196 IIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP-PIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF--KEDPRTLL  272 (613)
T ss_pred             EEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC-CCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEe--cCCHHHHH
Confidence            999999999999999999999999988877765 233459999999999999996444555555555554  44899999


Q ss_pred             HHHHHccceEEEechHHHHHHHhc--------ccc----------------------------------------ccCCC
Q 014435          247 RAIEKYRVTVWWVVPPIILALAKN--------SLV----------------------------------------RKFDI  278 (424)
Q Consensus       247 ~~i~~~~~t~~~~~p~~~~~l~~~--------~~~----------------------------------------~~~~~  278 (424)
                      +.+.+.+||+++++|.+|+.+.+.        ...                                        +...-
T Consensus       273 ~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG  352 (613)
T COG1022         273 EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG  352 (613)
T ss_pred             HHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhC
Confidence            999999999999999999876432        000                                        00011


Q ss_pred             CCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCC
Q 014435          279 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP  358 (424)
Q Consensus       279 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~  358 (424)
                      .++|++++||+++++++...++..  |+++.++||+||+++..+.+++.  ....+++|+|+|+++++|+|.        
T Consensus       353 gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~--~~~~gtvG~p~p~~evKI~d~--------  420 (613)
T COG1022         353 GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPD--RFVLGTVGKPLPGIEVKIADD--------  420 (613)
T ss_pred             CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEcccc--CcccCCcCCcCCCceEEEccC--------
Confidence            489999999999999999999987  79999999999999999998877  788899999999999999994        


Q ss_pred             CCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e--eEeeeeeeChhhHHHHHhcCCC
Q 014435          359 NQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D--FFCKLFQVAPAELEGLLVSHPE  416 (424)
Q Consensus       359 g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d--i~~~G~~v~~~~iE~~l~~~p~  416 (424)
                         |||+|+||.+++||             |+||+|||+|.++++|++       |  +..+|++|.|+.||+.+.++|-
T Consensus       421 ---GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~  497 (613)
T COG1022         421 ---GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPL  497 (613)
T ss_pred             ---ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCC
Confidence               99999999999999             999999999999999998       3  4469999999999999999999


Q ss_pred             cccceecC
Q 014435          417 ILDAVVIP  424 (424)
Q Consensus       417 V~~a~v~g  424 (424)
                      |.+++|+|
T Consensus       498 I~qi~vvg  505 (613)
T COG1022         498 IEQICVVG  505 (613)
T ss_pred             eeEEEEEe
Confidence            99999986

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-58  Score=455.74  Aligned_cols=389  Identities=23%  Similarity=0.286  Sum_probs=323.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..++++++++++
T Consensus        71 ~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  150 (549)
T PRK07788         71 ERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKAL  150 (549)
T ss_pred             CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEE
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCC---eEEE-ecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          101 ITVPELWDKVKDLNLP---AVLL-GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      |++++....+..+...   ...+ .......     .....+..+++++..... .   ......++.++++|||||||.
T Consensus       151 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~i~~TSGTTG~  221 (549)
T PRK07788        151 VYDDEFTDLLSALPPDLGRLRAWGGNPDDDE-----PSGSTDETLDDLIAGSST-A---PLPKPPKPGGIVILTSGTTGT  221 (549)
T ss_pred             EECchhHHHHHhhccccccceEEEEecCccc-----cCCcCcccHHHHhcCCCC-C---CCCCCCCCCcEEEECCCCCCC
Confidence            9998877766544211   1111 1110000     111344556666543221 1   112235678999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|+++.............  ..+++++...|++|.+|+. .++.++..|+++++...+++..+++.++++++|+
T Consensus       222 PKgv~~s~~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~  298 (549)
T PRK07788        222 PKGAPRPEPSPLAPLAGLLSRVPF--RAGETTLLPAPMFHATGWA-HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATA  298 (549)
T ss_pred             CCEEeccCccHHHHHHHHHhhCCC--CcCCeEEEccchHHHHHHH-HHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcE
Confidence            999999999998876655544443  3348899999999999995 6677899999999998899999999999999999


Q ss_pred             EEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCC
Q 014435          257 WWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG  334 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  334 (424)
                      +.++|+++..+++....  ...+++++|.+++||+++++++.+++.+.+ +..+++.||+||++..+.... .......+
T Consensus       299 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~  376 (549)
T PRK07788        299 LVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATP-EDLAEAPG  376 (549)
T ss_pred             EEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccCh-hhhhhcCC
Confidence            99999999999887654  455688999999999999999999999988 588999999999876544322 22234567


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh---------hhccccCceEEEecCCce-------e-eEe
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---------ELTVNCNLFSYFRSNDHN-------D-FFC  397 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy---------~~~~~TgD~g~~~~~g~~-------d-i~~  397 (424)
                      ++|+|+++++++|+| +++++++.|+.|||+++|+.++.||         ++||+|||+|+++++|.+       | +++
T Consensus       377 ~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~  455 (549)
T PRK07788        377 TVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS  455 (549)
T ss_pred             CcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEcCCCCEEEeccCcceEEE
Confidence            899999999999999 6899999999999999999999999         579999999999999877       3 899


Q ss_pred             eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          398 KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       398 ~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++|+|.+||++|.+||+|.+|+|+|
T Consensus       456 ~G~~v~p~eIE~~l~~~~~V~~~~v~~  482 (549)
T PRK07788        456 GGENVFPAEVEDLLAGHPDVVEAAVIG  482 (549)
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEC
Confidence            999999999999999999999999985

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-58  Score=457.93  Aligned_cols=396  Identities=23%  Similarity=0.255  Sum_probs=308.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.++++++|+.|+++|+++||+|++++||++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        91 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~  170 (647)
T PTZ00237         91 IKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIIT  170 (647)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEE
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc---------hHHHhc---CC---CCeEEEecCCC-ccccc-----cccCCCcccchhhhhhccCC---CCCCCCCC
Q 014435          103 VPEL---------WDKVKD---LN---LPAVLLGSKDK-VSSSG-----LISRSSKIVSFHDLIELSGS---VTDIPDVS  158 (424)
Q Consensus       103 ~~~~---------~~~~~~---~~---~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  158 (424)
                      ++..         ...+..   ..   ...++...... .....     ..........+++++.....   ........
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (647)
T PTZ00237        171 TNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVP  250 (647)
T ss_pred             cccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCcee
Confidence            7531         111111   11   11222211100 00000     00001122345554432110   01112234


Q ss_pred             CCCCCEEEEecCCCCCCCcchhhhcHHH-HHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEec
Q 014435          159 VKQTDAAALLYSSGTTGVSKGVILTHKN-FIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM  237 (424)
Q Consensus       159 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~  237 (424)
                      ..++|+++|+|||||||.||+|+++|.+ +...........  ....++++++..|+.|..+.. .++.++..|+++++.
T Consensus       251 ~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~--~~~~~d~~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~  327 (647)
T PTZ00237        251 VESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII--EKDIPTVVFSHSSIGWVSFHG-FLYGSLSLGNTFVMF  327 (647)
T ss_pred             eCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc--CCCCCcEEEEcCCCceEeeHH-HHHHHHhCCcEEEEe
Confidence            5689999999999999999999999998 433222212222  223348999999999987653 678899999999987


Q ss_pred             CC--CC----HHHHHHHHHHccceEEEechHHHHHHHhcccc-----ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCC
Q 014435          238 GK--FD----IEMALRAIEKYRVTVWWVVPPIILALAKNSLV-----RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  306 (424)
Q Consensus       238 ~~--~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~  306 (424)
                      +.  +.    +..+++.++++++|+++++|++++.|++....     ...++++||.++++|+++++++.+++++.+ ++
T Consensus       328 ~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~  406 (647)
T PTZ00237        328 EGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KI  406 (647)
T ss_pred             CCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHhc-CC
Confidence            53  12    68899999999999999999999999875321     345689999999999999999999999988 59


Q ss_pred             eEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecC---Ccchhh--------
Q 014435          307 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP---NVTPVF--------  375 (424)
Q Consensus       307 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~---~~~~gy--------  375 (424)
                      ++++.||+||+++.+....+. .....+++|+|+++++++|+| ++|++++.|+.|||++++|   .++.||        
T Consensus       407 ~i~~~yG~TE~~~~~~~~~~~-~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~  484 (647)
T PTZ00237        407 KSSRGYGQTEIGITYLYCYGH-INIPYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK  484 (647)
T ss_pred             CEEeeechHHhChhhhccCCC-CCCCCCCCccCcCCceEEEEC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence            999999999988655443321 133457899999999999999 6899999999999999986   567777        


Q ss_pred             ------hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          376 ------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 ------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            ++||+|||+|+++++|.+       | |+++|++|+|.|||++|.+||.|.||+|+|
T Consensus       485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg  547 (647)
T PTZ00237        485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIG  547 (647)
T ss_pred             HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEe
Confidence                  489999999999999987       3 999999999999999999999999999986

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.2e-57  Score=451.79  Aligned_cols=398  Identities=25%  Similarity=0.353  Sum_probs=317.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..++|||+||.+++.++|+.|++.|+++||+|++++||++++++++|||+++| +++|+++.++++++.+++++++++++
T Consensus        55 ~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~l  133 (632)
T PRK07529         55 RPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVL  133 (632)
T ss_pred             CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEE
Confidence            45689999999999999999999999999999999999999999999999999 56999999999999999999999999


Q ss_pred             EEcccch-----HHHh----cCC-CCeEEEecCCCccccc---c-----ccCCCcccchhhhhhccCCCCCCCCCCCCCC
Q 014435          101 ITVPELW-----DKVK----DLN-LPAVLLGSKDKVSSSG---L-----ISRSSKIVSFHDLIELSGSVTDIPDVSVKQT  162 (424)
Q Consensus       101 i~~~~~~-----~~~~----~~~-~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (424)
                      |++..+.     ..+.    ... ...++...........   .     ......+..+.+.+...............++
T Consensus       134 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  213 (632)
T PRK07529        134 VTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPD  213 (632)
T ss_pred             EEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcC
Confidence            9986432     1221    111 1122221111000000   0     0011223445554443321111122334679


Q ss_pred             CEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC--C
Q 014435          163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--F  240 (424)
Q Consensus       163 ~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~  240 (424)
                      ++++++|||||||.||+|.++|+++.............  ..++++++.+|++|.++....++.++..|+++++.++  +
T Consensus       214 ~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~  291 (632)
T PRK07529        214 DVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL--GPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGY  291 (632)
T ss_pred             ceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCC--CCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCcccc
Confidence            99999999999999999999999998876655444443  3458999999999999998788999999999999864  2


Q ss_pred             -C---HHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCcc
Q 014435          241 -D---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  316 (424)
Q Consensus       241 -~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE  316 (424)
                       +   ...+++.++++++|++.++|+++..|++.... ..+++++|.+++||+++++++.+++++.+ ++++++.||+||
T Consensus       292 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE  369 (632)
T PRK07529        292 RGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTE  369 (632)
T ss_pred             CcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccc
Confidence             1   36788999999999999999999999876542 34688999999999999999999999988 699999999999


Q ss_pred             CCCceeecCCCCCccCCCccccccCCcEEEEeeC-CCC---ccCCCCCceeEEEecCCcchhh------------hhccc
Q 014435          317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV-DTL---KPLPPNQLGEIWVRGPNVTPVF------------ELTVN  380 (424)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~---~~~~~g~~Gel~v~~~~~~~gy------------~~~~~  380 (424)
                      ++.++...... .....+++|.|+|+++++|+.. +++   ++++.|+.|||+++|+.++.||            ++||+
T Consensus       370 ~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~  448 (632)
T PRK07529        370 ATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLN  448 (632)
T ss_pred             cCcccccCCcc-ccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCccccccccCCCceE
Confidence            88766554332 2346789999999999998632 455   7899999999999999999999            57999


Q ss_pred             cCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          381 CNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       381 TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |||+|+++++|.+       | ++++|++|+|.+||++|.+||+|.+|+|+|
T Consensus       449 TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg  500 (632)
T PRK07529        449 TGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVG  500 (632)
T ss_pred             cCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            9999999999977       3 999999999999999999999999999985

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.6e-57  Score=451.63  Aligned_cols=396  Identities=23%  Similarity=0.292  Sum_probs=312.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|
T Consensus        81 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li  160 (628)
T TIGR02316        81 ERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIV  160 (628)
T ss_pred             eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecccch---------HHHh----cC--CCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435          102 TVPELW---------DKVK----DL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus       102 ~~~~~~---------~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      +++...         ..+.    ..  ....+++.........   ........++++...... ...+.....++++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~  236 (628)
T TIGR02316       161 SADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR---LIPGRDVDYAALRTQHED-AQVPVEWLESNEPSY  236 (628)
T ss_pred             ECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC---cccCccccHHHHhhcccc-CCCCceecCCCCcEE
Confidence            986432         1111    11  1122222221100000   000112344444432211 112223346799999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHH-HHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CC
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAAS-LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FD  241 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~  241 (424)
                      |+|||||||.||+|+++|+++.... .........  ..++++++..|++|..|+...++.+|..|+++++.+.    .+
T Consensus       237 ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~  314 (628)
T TIGR02316       237 ILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGI--RAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPD  314 (628)
T ss_pred             EEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCC--CCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCC
Confidence            9999999999999999999975432 222222333  3448999999999999987678899999999998763    47


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCC
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA  319 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  319 (424)
                      +..+++.++++++|+++++|++++.|.+....  ...++++||.+++||+++++++.+++++.+ +..+++.||+||++.
T Consensus       315 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~  393 (628)
T TIGR02316       315 PGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGW  393 (628)
T ss_pred             HHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCc
Confidence            89999999999999999999999998876432  345689999999999999999999999888 589999999999885


Q ss_pred             ceeecCCCC--CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCC---cchhh----------------hhc
Q 014435          320 PISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN---VTPVF----------------ELT  378 (424)
Q Consensus       320 ~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~---~~~gy----------------~~~  378 (424)
                      .++...+..  .....+++|+|+++++++|+|++++++++.|+.|||+++||.   ++.+|                ++|
T Consensus       394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~  473 (628)
T TIGR02316       394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPL  473 (628)
T ss_pred             eeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCE
Confidence            444322211  124567899999999999999668999999999999999983   34444                348


Q ss_pred             cccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          379 VNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       379 ~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+|||+|++++||.+       | |+++|++|+|.|||++|.+||+|.||+|+|
T Consensus       474 ~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg  527 (628)
T TIGR02316       474 YSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVG  527 (628)
T ss_pred             EECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence            999999999999987       3 999999999999999999999999999986

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=9e-58  Score=457.52  Aligned_cols=396  Identities=21%  Similarity=0.239  Sum_probs=305.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      ..+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       105 ~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~  184 (696)
T PLN02387        105 EWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVIC  184 (696)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEE
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCC-----CCeEEEecCCCcccccc--ccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          103 VPELWDKVKDLN-----LPAVLLGSKDKVSSSGL--ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       103 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      +.+....+....     ...++............  ......+.+++++...+.. ...+.....++|+++|+|||||||
T Consensus       185 ~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG  263 (696)
T PLN02387        185 DSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTG  263 (696)
T ss_pred             CHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCC
Confidence            987766554432     12222221111000000  0011223456666544332 111223346899999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCC--------HHHHHH
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD--------IEMALR  247 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~  247 (424)
                      .||||++||+++...+........ ....++++++++|++|.+++. .....+..|+++.......        +..++.
T Consensus       264 ~PKGV~lth~~l~~~~~~~~~~~~-~~~~~d~~l~~lPl~Hi~~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~  341 (696)
T PLN02387        264 LPKGVMMTHGNIVATVAGVMTVVP-KLGKNDVYLAYLPLAHILELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKG  341 (696)
T ss_pred             CCCEEEEEcHHHHHHHHHHHhhcC-CCCCCCEEEEECcHHHHHHHH-HHHHHHHhCCEEEECChhhhcccccccccCchh
Confidence            999999999999887766543321 123459999999999999986 3444567777776654321        234567


Q ss_pred             HHHHccceEEEechHHHHHHHhccccc-----------------------------------------------cCCCCC
Q 014435          248 AIEKYRVTVWWVVPPIILALAKNSLVR-----------------------------------------------KFDISS  280 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------------------------~~~~~~  280 (424)
                      .++++++|++.++|.+++.+.+.....                                               ....++
T Consensus       342 ~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~  421 (696)
T PLN02387        342 DASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGR  421 (696)
T ss_pred             hHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCc
Confidence            899999999999999999886532100                                               000158


Q ss_pred             eeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCc-cC--C
Q 014435          281 LKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK-PL--P  357 (424)
Q Consensus       281 lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~-~~--~  357 (424)
                      +|.+++||+++++++.+.++..+ ++.+++.||+||+++.++...+.  +...+++|.|+|+++++|+|.+++. .+  .
T Consensus       422 lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~  498 (696)
T PLN02387        422 IRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDK  498 (696)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCC
Confidence            99999999999999988887777 69999999999998776655443  4567899999999999999954433 22  3


Q ss_pred             CCCceeEEEecCCcchhh---------------hh--ccccCceEEEecCCce-------e-eEe-eeeeeChhhHHHHH
Q 014435          358 PNQLGEIWVRGPNVTPVF---------------EL--TVNCNLFSYFRSNDHN-------D-FFC-KLFQVAPAELEGLL  411 (424)
Q Consensus       358 ~g~~Gel~v~~~~~~~gy---------------~~--~~~TgD~g~~~~~g~~-------d-i~~-~G~~v~~~~iE~~l  411 (424)
                      ++..|||+++|+.++.||               ++  ||+|||+|++++||++       | |+. +|++|+|.+||++|
T Consensus       499 ~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l  578 (696)
T PLN02387        499 PMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL  578 (696)
T ss_pred             CCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHH
Confidence            445799999999999999               13  9999999999999988       3 776 69999999999999


Q ss_pred             hcCCCcccceecC
Q 014435          412 VSHPEILDAVVIP  424 (424)
Q Consensus       412 ~~~p~V~~a~v~g  424 (424)
                      .+||.|.+|+|+|
T Consensus       579 ~~~p~V~~~~V~g  591 (696)
T PLN02387        579 SVSPYVDNIMVHA  591 (696)
T ss_pred             hcCCCeeEEEEEe
Confidence            9999999999986

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=4.3e-57  Score=450.69  Aligned_cols=394  Identities=25%  Similarity=0.308  Sum_probs=316.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+
T Consensus        87 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~  166 (625)
T TIGR02188        87 RKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVIT  166 (625)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchH---------HH----hcCC--CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEE
Q 014435          103 VPELWD---------KV----KDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL  167 (424)
Q Consensus       103 ~~~~~~---------~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  167 (424)
                      ++....         .+    ....  ...+++........ .  ........+++++....  .........++++++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i  241 (625)
T TIGR02188       167 ADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-P--WVEGRDVWWHDLMAKAS--AYCEPEPMDSEDPLFI  241 (625)
T ss_pred             cCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCc-C--ccccccccHHHHHhhcC--CCCCceecCCCCceEE
Confidence            875321         11    1111  11122221110000 0  00111223444443322  2223334567899999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHH-hhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CCH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDI  242 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~  242 (424)
                      +|||||||.||+|+++|+++........ .....  ..++++++..|++|..+....++.+|..|+++++.+.    .++
T Consensus       242 l~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~  319 (625)
T TIGR02188       242 LYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDI--KDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDP  319 (625)
T ss_pred             EecCCCCCCCCeEEECccHhHHHHHHHHHhccCC--CCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCCh
Confidence            9999999999999999999765433222 22222  3448999999999999886678899999999998753    479


Q ss_pred             HHHHHHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCC--CCeEEecccCccCC
Q 014435          243 EMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GATIFQGYGMTETC  318 (424)
Q Consensus       243 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~yG~tE~~  318 (424)
                      ..+++.++++++|++.++|++++.|.+....  ...++++||.++++|+++++++.+++.+.++  ++++++.||+||++
T Consensus       320 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~  399 (625)
T TIGR02188       320 GRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETG  399 (625)
T ss_pred             hHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccC
Confidence            9999999999999999999999999876532  3346889999999999999999999999885  37899999999998


Q ss_pred             CceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCC-CCCceeEEEec--CCcchhh---------------hhccc
Q 014435          319 APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWVRG--PNVTPVF---------------ELTVN  380 (424)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Gel~v~~--~~~~~gy---------------~~~~~  380 (424)
                      +.+....+.....+++++|+|++|++++|+| ++|++++ .|+.|||++++  |.++.||               ++||+
T Consensus       400 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~  478 (625)
T TIGR02188       400 GIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYF  478 (625)
T ss_pred             CceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEE
Confidence            7765543332245678899999999999999 7899999 99999999999  5677777               56899


Q ss_pred             cCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          381 CNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       381 TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |||+|+++++|.+       | ++++|++|+|.+||++|.+||.|.||+|+|
T Consensus       479 TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg  530 (625)
T TIGR02188       479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVG  530 (625)
T ss_pred             CCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            9999999999987       3 999999999999999999999999999985

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=7.8e-57  Score=441.59  Aligned_cols=391  Identities=39%  Similarity=0.615  Sum_probs=324.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+
T Consensus        49 ~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~  128 (537)
T PLN02246         49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIIT  128 (537)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCC--CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          103 VPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       103 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++....+.....  ...++..+..         ......+.++.....  ...+.....++++++++|||||||.||+|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv  197 (537)
T PLN02246        129 QSCYVDKLKGLAEDDGVTVVTIDDP---------PEGCLHFSELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGV  197 (537)
T ss_pred             ccchHHHHHHHhhcCCceEEEeCCC---------CCCceeHHHHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceE
Confidence            9877665544321  1111111110         011223333333222  12233345678999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhh--hhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEE
Q 014435          181 ILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW  258 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~  258 (424)
                      +++|+++...........  ......+++++..+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.
T Consensus       198 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~  277 (537)
T PLN02246        198 MLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAP  277 (537)
T ss_pred             EEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEE
Confidence            999999987655432210  112234589999999999999876788899999999999999999999999999999999


Q ss_pred             echHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCC---CCCccCCCc
Q 014435          259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP---LVGVRRSGS  335 (424)
Q Consensus       259 ~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~---~~~~~~~~~  335 (424)
                      ++|.++..|.+.......+++++|.+++||+++++++.+.+++.+++..+++.||+||++.+++....   .......++
T Consensus       278 ~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~  357 (537)
T PLN02246        278 FVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGS  357 (537)
T ss_pred             cchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCc
Confidence            99999999988765555567899999999999999999999999988999999999998865543211   111345678


Q ss_pred             cccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e-
Q 014435          336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D-  394 (424)
Q Consensus       336 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d-  394 (424)
                      +|+|+++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+|+++++|.+       | 
T Consensus       358 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~  437 (537)
T PLN02246        358 CGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKEL  437 (537)
T ss_pred             cccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccce
Confidence            9999999999999977899999999999999999999999             579999999999999877       3 


Q ss_pred             eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++.+|++|+|.+||+.|.+||+|.+|+|++
T Consensus       438 i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~  467 (537)
T PLN02246        438 IKYKGFQVAPAELEALLISHPSIADAAVVP  467 (537)
T ss_pred             EEECCEEECcHHHHHHHHhCCCeeEEEEEc
Confidence            889999999999999999999999999985

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1e-57  Score=426.76  Aligned_cols=399  Identities=23%  Similarity=0.290  Sum_probs=326.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .+..+||.|..+++.+++..|++.|+++++.|+|+.-|++||+++..||...|.+.|||..+++++.+.++++.+...++
T Consensus       105 ~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv  184 (691)
T KOG1256|consen  105 PYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIV  184 (691)
T ss_pred             CcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEE
Confidence            44558999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEc-ccchHHHhcCCC------CeEEEecCCCcc--ccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435          101 ITV-PELWDKVKDLNL------PAVLLGSKDKVS--SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus       101 i~~-~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      +++ ++....+.+...      -+.++.......  ..........+.+|+++++.+......+..+..++|.+.|+|||
T Consensus       185 ~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTS  264 (691)
T KOG1256|consen  185 FVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTS  264 (691)
T ss_pred             EEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcC
Confidence            999 445555444221      122222222211  22222334568999999998875332222577899999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhh----hhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQ----ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR  247 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  247 (424)
                      ||||.||||++||+|+...+.......    ......+|.+++++|+.|++..... ...++.|+++.+..+ |+..+.+
T Consensus       265 GTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~-~~~~~~G~~IgF~~g-D~~~l~~  342 (691)
T KOG1256|consen  265 GTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVE-LYTFYIGAKIGFARG-DILKLTD  342 (691)
T ss_pred             CCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHH-HhHhhcccEEEEecC-ChHHHHH
Confidence            999999999999999998655322221    1122235999999999999999644 444588999999875 8899999


Q ss_pred             HHHHccceEEEechHHHHHHHhc-----------------------c---cc----c-cCC--------------CCCee
Q 014435          248 AIEKYRVTVWWVVPPIILALAKN-----------------------S---LV----R-KFD--------------ISSLK  282 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~-----------------------~---~~----~-~~~--------------~~~lr  282 (424)
                      .+++.+||.+.++|.+|+.+.+.                       .   ..    + ...              -.++|
T Consensus       343 dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr  422 (691)
T KOG1256|consen  343 DLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVR  422 (691)
T ss_pred             HHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCcee
Confidence            99999999999999999877442                       0   00    0 000              14789


Q ss_pred             EEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCce
Q 014435          283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  362 (424)
Q Consensus       283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G  362 (424)
                      .+++|++|+++++...++..+ +++++++||+||+.+.++...+.  +...+++|.|+|+++++++|+++...-+.|..|
T Consensus       423 ~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~--d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~G  499 (691)
T KOG1256|consen  423 LIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPG--DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKG  499 (691)
T ss_pred             EEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCC--CCCCCCcCCcccCceEEEechHHhCcCcCCCcc
Confidence            999999999999999999998 69999999999998666666655  458999999999999999998887777888899


Q ss_pred             eEEEecCCcchhh-------------hhccccCceEEEecCCce---e-----eE-eeeeeeChhhHHHHHhcCCCcccc
Q 014435          363 EIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN---D-----FF-CKLFQVAPAELEGLLVSHPEILDA  420 (424)
Q Consensus       363 el~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~---d-----i~-~~G~~v~~~~iE~~l~~~p~V~~a  420 (424)
                      |||++|++++.||             |+|++|||+|+|+++|.+   |     ++ ..|++|.|+.||++..+.+.|.+.
T Consensus       500 EIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi  579 (691)
T KOG1256|consen  500 EICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQI  579 (691)
T ss_pred             eEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEE
Confidence            9999999999999             999999999999999998   3     44 499999999999999999999999


Q ss_pred             eecC
Q 014435          421 VVIP  424 (424)
Q Consensus       421 ~v~g  424 (424)
                      +|.|
T Consensus       580 ~V~g  583 (691)
T KOG1256|consen  580 FVLG  583 (691)
T ss_pred             EEEC
Confidence            9876

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.6e-57  Score=448.25  Aligned_cols=398  Identities=25%  Similarity=0.292  Sum_probs=311.9

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. ..+.+||+||.++++++|++|.++|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..++
T Consensus        21 p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l  100 (563)
T PLN02860         21 GNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAM  100 (563)
T ss_pred             CCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHH
Confidence            3344443 345799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcC-----CC-CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435           93 KDSNPKLVITVPELWDKVKDL-----NL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      +.+++++++++++........     .. ...+...... ...  ..........++....... .........++++++
T Consensus       101 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~  176 (563)
T PLN02860        101 LLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPS-SSV--FIFLNSFLTTEMLKQRALG-TTELDYAWAPDDAVL  176 (563)
T ss_pred             HhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcc-ccc--ccchhhccccchhccCccc-cccccCCCCCCCeEE
Confidence            999999999987653322221     11 1111111100 000  0000011111111111000 011112335789999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHH
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL  246 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~  246 (424)
                      ++|||||||.||+|.++|+++.............  ..+++++..+|++|.+|+. .++.++..|+++++.+.+++..++
T Consensus       177 i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~  253 (563)
T PLN02860        177 ICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCHIGGLS-SALAMLMVGACHVLLPKFDAKAAL  253 (563)
T ss_pred             EEecCCCCCCCceEEeehHHHHHHHHHHHhhcCC--CCCCEEEEecCchhhccHH-HHHHHHHcCceEEecCCCCHHHHH
Confidence            9999999999999999999998765554433333  3348999999999999985 678889999999999899999999


Q ss_pred             HHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeec
Q 014435          247 RAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE  324 (424)
Q Consensus       247 ~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~  324 (424)
                      +.++++++|++.++|+++..|++....  ....++++|.+++||+++++++.+++++.|++.++++.||+||+++.++..
T Consensus       254 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  333 (563)
T PLN02860        254 QAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFM  333 (563)
T ss_pred             HHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccc
Confidence            999999999999999999999876432  224578999999999999999999999999889999999999987655432


Q ss_pred             CCCC---------------------CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------
Q 014435          325 NPLV---------------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------  375 (424)
Q Consensus       325 ~~~~---------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------  375 (424)
                      ....                     ......++|+|+++++++|++++      .|+.|||+++|+.++.||        
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~  407 (563)
T PLN02860        334 TLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETA  407 (563)
T ss_pred             cccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccc
Confidence            2110                     01122378999999999999843      688999999999999999        


Q ss_pred             -----hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          376 -----ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 -----~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           ++||+|||+|+++++|.+       | ++.+|++|+|.+||+++.+||+|.+|+|+|
T Consensus       408 ~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~  469 (563)
T PLN02860        408 SVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVG  469 (563)
T ss_pred             hhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEE
Confidence                 689999999999999987       3 999999999999999999999999999985

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-57  Score=457.17  Aligned_cols=381  Identities=22%  Similarity=0.286  Sum_probs=315.1

Q ss_pred             cCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHH
Q 014435           14 SLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK   93 (424)
Q Consensus        14 ~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~   93 (424)
                      ++++++..++.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++
T Consensus        20 pd~~a~~~~~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~   99 (705)
T PRK06060         20 YDRPAFYAADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAAR   99 (705)
T ss_pred             CCceEEEecCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHh
Confidence            45555544567999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCC
Q 014435           94 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT  173 (424)
Q Consensus        94 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  173 (424)
                      .++++++|++.+....+....    ..                   ...+++...............++++++++|||||
T Consensus       100 ~~~~~~vi~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGS  156 (705)
T PRK06060        100 NTEPALVVTSDALRDRFQPSR----VA-------------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGT  156 (705)
T ss_pred             cCCCcEEEEchHHhhhhcccc----cc-------------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCC
Confidence            999999999876544332110    00                   0011111000001111123456899999999999


Q ss_pred             CCCcchhhhcHHHHHHHHHHHHh-hhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CCCHHHHHHHHHH
Q 014435          174 TGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEK  251 (424)
Q Consensus       174 TG~pK~v~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~  251 (424)
                      ||.||+|.++|+++......... ....  ...++++...|++|.+++...++.++..|+++++.+ .+++..+...+++
T Consensus       157 TG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~  234 (705)
T PRK06060        157 TGPPKAAIHRHADPLTFVDAMCRKALRL--TPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSAR  234 (705)
T ss_pred             CCCCcEEEEccccHHHHHHHHHHHhhCC--CCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHh
Confidence            99999999999998876554422 2233  334889999999999988667788899999999886 4788899999999


Q ss_pred             ccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCcc
Q 014435          252 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR  331 (424)
Q Consensus       252 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~  331 (424)
                      +++|+++++|+++..+++...  ...++++|.+++||+++++++.+++.+.+++.++++.||+||++..+......  ..
T Consensus       235 ~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~  310 (705)
T PRK06060        235 FGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD--EW  310 (705)
T ss_pred             cCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC--CC
Confidence            999999999999999887543  23578999999999999999999999999779999999999987655433222  34


Q ss_pred             CCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----------hhccccCceEEEecCCce-------e
Q 014435          332 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----------ELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       332 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----------~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      ..+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||          ++||+|||+|+++++|++       |
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~dG~l~~~GR~dd  389 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDSDGWVTYRCRADD  389 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECCCceEEEecccCc
Confidence            567899999999999999 6789999999999999999999999          579999999999999987       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       ++++|++|+|.|||+.|.+||.|.+|+|+|
T Consensus       390 ~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~  420 (705)
T PRK06060        390 TEVIGGVNVDPREVERLIIEDEAVAEAAVVA  420 (705)
T ss_pred             eEEECCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence             899999999999999999999999999975

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-56  Score=446.62  Aligned_cols=394  Identities=24%  Similarity=0.324  Sum_probs=315.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        97 ~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~  176 (637)
T PRK00174         97 RKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVIT  176 (637)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchH---------HHh----cCC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEe
Q 014435          103 VPELWD---------KVK----DLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  168 (424)
Q Consensus       103 ~~~~~~---------~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  168 (424)
                      ++....         .+.    ... ...+++....... .  .........++++.....  ...+.....++++++|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~  251 (637)
T PRK00174        177 ADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGD-V--DWVEGRDLWWHELVAGAS--DECEPEPMDAEDPLFIL  251 (637)
T ss_pred             cCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCC-c--CcCCCCcccHHHHHhhcC--CCCCccccCCCCcEEEE
Confidence            875431         111    111 1222222111000 0  000111223444443222  22223345678999999


Q ss_pred             cCCCCCCCcchhhhcHHHHHHHHHHHH-hhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CCHH
Q 014435          169 YSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIE  243 (424)
Q Consensus       169 ~TSGtTG~pK~v~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~  243 (424)
                      |||||||.||+|+++|+++........ .....  ...+++++..|++|..++...++.+|..|+++++.+.    .++.
T Consensus       252 ~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~  329 (637)
T PRK00174        252 YTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDY--KDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPG  329 (637)
T ss_pred             ECCCCCCCCceEEeCcchhHHHHHHHHHhccCC--CCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChH
Confidence            999999999999999999765433222 22222  3348999999999999987678899999999998753    4799


Q ss_pred             HHHHHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCC--CeEEecccCccCCC
Q 014435          244 MALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPG--ATIFQGYGMTETCA  319 (424)
Q Consensus       244 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~yG~tE~~~  319 (424)
                      .+++.|+++++|++.++|++++.|++....  ...++++||.++++|+++++++.+++.+.+++  +++++.||+||+++
T Consensus       330 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~  409 (637)
T PRK00174        330 RFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGG  409 (637)
T ss_pred             HHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCC
Confidence            999999999999999999999999876542  23467899999999999999999999988753  78999999999987


Q ss_pred             ceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEec--CCcchhh---------------hhccccC
Q 014435          320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG--PNVTPVF---------------ELTVNCN  382 (424)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy---------------~~~~~Tg  382 (424)
                      .+....+.....+.+++|+|++|++++|+| +++++++.|+.|||+++|  ++++.||               ++||+||
T Consensus       410 ~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  488 (637)
T PRK00174        410 IMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG  488 (637)
T ss_pred             ceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence            665443322234567899999999999999 789999999999999999  5787887               4689999


Q ss_pred             ceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          383 LFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       383 D~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+|+++++|++       | ++++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       489 Dl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg  538 (637)
T PRK00174        489 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVG  538 (637)
T ss_pred             ceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            99999999987       3 999999999999999999999999999985

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=3.1e-56  Score=438.10  Aligned_cols=387  Identities=25%  Similarity=0.333  Sum_probs=320.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|++|.++.+++..+++.+++++++
T Consensus        53 ~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li  132 (547)
T PRK13295         53 PRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLV  132 (547)
T ss_pred             cceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEE
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecccch-----HHHhcC----C-CCeEEEecCCCccccccccCCCcccchhhhhhcc-----C-CCCCCCCCCCCCCCEE
Q 014435          102 TVPELW-----DKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS-----G-SVTDIPDVSVKQTDAA  165 (424)
Q Consensus       102 ~~~~~~-----~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~  165 (424)
                      +++++.     ..+..+    . ...++.....            ...++.+++...     . ...........+++++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  200 (547)
T PRK13295        133 VPKTFRGFDHAAMARRLRPELPALRHVVVVGGD------------GADSFEALLITPAWEQEPDAPAILARLRPGPDDVT  200 (547)
T ss_pred             EeccccCcchHHHHHHHhhhCCCcceEEEecCC------------CccCHHHHhhCCccccccccccccccCCCCCccee
Confidence            987641     111111    1 1111111110            111233322111     0 0011112334678999


Q ss_pred             EEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHH
Q 014435          166 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA  245 (424)
Q Consensus       166 ~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  245 (424)
                      +++|||||||.||+|.++|+++...+.........  ..++++++.+|++|.+++...++.++..|+++++.+.+++..+
T Consensus       201 ~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  278 (547)
T PRK13295        201 QLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL--GADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARA  278 (547)
T ss_pred             EEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCC--CCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHH
Confidence            99999999999999999999998877665544444  3349999999999999987778999999999999988999999


Q ss_pred             HHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecC
Q 014435          246 LRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN  325 (424)
Q Consensus       246 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~  325 (424)
                      ++.++++++|++.++|.++..+..........++++|.+++||+++++++.+++.+.+ ++++++.||+||++.+.+...
T Consensus       279 ~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~  357 (547)
T PRK13295        279 AELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKL  357 (547)
T ss_pred             HHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccC
Confidence            9999999999999999999999887666666788999999999999999999999988 799999999999887654433


Q ss_pred             CCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-----------hhccccCceEEEecCCce-
Q 014435          326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-----------ELTVNCNLFSYFRSNDHN-  393 (424)
Q Consensus       326 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-----------~~~~~TgD~g~~~~~g~~-  393 (424)
                      .........++|+|.++++++|+| +++++++.|+.|||+++|+.++.||           ++||+|||+|+++++|.+ 
T Consensus       358 ~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~~~g~l~  436 (547)
T PRK13295        358 DDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDADGYIR  436 (547)
T ss_pred             CCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEcCCceEE
Confidence            221123456889999999999999 6789999999999999999999999           468999999999999877 


Q ss_pred             ------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            | ++.+|++|+|.+||++|.++|.|.+++|+|
T Consensus       437 ~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~  474 (547)
T PRK13295        437 ISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVA  474 (547)
T ss_pred             EEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence                  3 889999999999999999999999999975

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-56  Score=440.70  Aligned_cols=389  Identities=28%  Similarity=0.399  Sum_probs=321.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++
T Consensus        71 ~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii  150 (570)
T PRK04319         71 KEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLI  150 (570)
T ss_pred             ceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhc--CC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcc
Q 014435          102 TVPELWDKVKD--LN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK  178 (424)
Q Consensus       102 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  178 (424)
                      +++........  .. ...++......       ........+.+.+....  ...+.....++++++++|||||||.||
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK  221 (570)
T PRK04319        151 TTPALLERKPADDLPSLKHVLLVGEDV-------EEGPGTLDFNALMEQAS--DEFDIEWTDREDGAILHYTSGSTGKPK  221 (570)
T ss_pred             EChhhhhccchhcCCCceEEEEECCCc-------CCCcCccCHHHHHhhcC--CcCCccccCCCCCEEEEeCCCCCCCCC
Confidence            98876543321  11 11222221110       01122334555544322  222233446789999999999999999


Q ss_pred             hhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CCCHHHHHHHHHHccceEE
Q 014435          179 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVW  257 (424)
Q Consensus       179 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~  257 (424)
                      +|+++|+++..............  ..+++++..|++|.+|+...++.++..|+++++.. .+++..+++.++++++|++
T Consensus       222 gV~~s~~~l~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~  299 (570)
T PRK04319        222 GVLHVHNAMLQHYQTGKYVLDLH--EDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVW  299 (570)
T ss_pred             EEEEecHHHHHHHHHHHHhcCCC--CCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEE
Confidence            99999999987765554444443  34889999999999988777889999999998875 5899999999999999999


Q ss_pred             EechHHHHHHHhccc--cccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCc
Q 014435          258 WVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS  335 (424)
Q Consensus       258 ~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  335 (424)
                      +++|++++.|.+...  ....+++++|.+++||+++++++.+++.+.+ +.++++.||+||+++.+....+. ....+++
T Consensus       300 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~  377 (570)
T PRK04319        300 YTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPA-MDIKPGS  377 (570)
T ss_pred             EeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCC-CCCCCCc
Confidence            999999999987543  2344678999999999999999999999988 68999999999998766544332 1345688


Q ss_pred             cccccCCcEEEEeeCCCCccCCCCCceeEEEec--CCcchhh------------hhccccCceEEEecCCce-------e
Q 014435          336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG--PNVTPVF------------ELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       336 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      +|+|+++++++|+| +++.+++.|+.|||+++|  +.++.||            ++||+|||+++++++|.+       |
T Consensus       378 ~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~d  456 (570)
T PRK04319        378 MGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDD  456 (570)
T ss_pred             CcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCCC
Confidence            99999999999999 688888999999999997  7889999            469999999999999877       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       ++.+|++|+|.+||+.|.+||.|.+++|+|
T Consensus       457 ~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g  487 (570)
T PRK04319        457 VIKTSGERVGPFEVESKLMEHPAVAEAGVIG  487 (570)
T ss_pred             EEEECCEEECHHHHHHHHhhCCCeeecceec
Confidence             889999999999999999999999999975

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.6e-56  Score=437.52  Aligned_cols=393  Identities=33%  Similarity=0.523  Sum_probs=323.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.+++++++
T Consensus        53 ~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i  132 (546)
T PLN02330         53 GKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIV  132 (546)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCC-CCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++.....+.......+.+...          .......+.+++...... ...+.....++++++++|||||||.||+|
T Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv  202 (546)
T PLN02330        133 TNDTNYGKVKGLGLPVIVLGEE----------KIEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGV  202 (546)
T ss_pred             EccchhhhHhhcCCcEEEecCC----------CCCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEE
Confidence            9998887776655443333211          111223345554332211 11122334578999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEec
Q 014435          181 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV  260 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  260 (424)
                      .++|+++..................+..+..+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++
T Consensus       203 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~  282 (546)
T PLN02330        203 MLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIV  282 (546)
T ss_pred             EEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecC
Confidence            99999988764432111111111236789999999999987778889999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccccccCCCC--CeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecC-CCC--CccCCCc
Q 014435          261 PPIILALAKNSLVRKFDIS--SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN-PLV--GVRRSGS  335 (424)
Q Consensus       261 p~~~~~l~~~~~~~~~~~~--~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~-~~~--~~~~~~~  335 (424)
                      |+++..+.+.......++.  ++|.+++||+++++++++++.+.|+++++++.||+||++.+..... +..  .....++
T Consensus       283 P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~  362 (546)
T PLN02330        283 PPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNS  362 (546)
T ss_pred             CHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCc
Confidence            9999999886554444444  4789999999999999999999998899999999999875543321 111  1234468


Q ss_pred             cccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e-
Q 014435          336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D-  394 (424)
Q Consensus       336 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d-  394 (424)
                      +|.|+++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+|++++||.+       | 
T Consensus       363 vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~  442 (546)
T PLN02330        363 VGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKEL  442 (546)
T ss_pred             cccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHh
Confidence            9999999999999987899999999999999999999999             579999999999999987       3 


Q ss_pred             eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++.+|++|+|.+||++|.++|.|.+++|+|
T Consensus       443 i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  472 (546)
T PLN02330        443 IKYKGFQVAPAELEAILLTHPSVEDAAVVP  472 (546)
T ss_pred             hhcCCEEECHHHHHHHHHhCCchheEEEEe
Confidence            889999999999999999999999999985

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=3.6e-56  Score=438.55  Aligned_cols=381  Identities=22%  Similarity=0.316  Sum_probs=304.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEc
Q 014435           24 DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV  103 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~  103 (424)
                      ++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++..++++++++++|++
T Consensus        41 ~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~  120 (552)
T PRK09274         41 ELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGI  120 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEec
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cc--chHHHhcCC---CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcc
Q 014435          104 PE--LWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK  178 (424)
Q Consensus       104 ~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  178 (424)
                      ++  ....+....   ...++.....         .......++++...... .........++++++++|||||||.||
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK  190 (552)
T PRK09274        121 PKAHLARRLFGWGKPSVRRLVTVGGR---------LLWGGTTLATLLRDGAA-APFPMADLAPDDMAAILFTSGSTGTPK  190 (552)
T ss_pred             cHHHHHHHHhccCccchhheeccccc---------cccCCccHHHhcccCcc-ccCCCCCCCCCCeEEEEECCCCCCCCc
Confidence            52  222222111   1111111000         00011123333311111 112233446789999999999999999


Q ss_pred             hhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-------CCCHHHHHHHHHH
Q 014435          179 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-------KFDIEMALRAIEK  251 (424)
Q Consensus       179 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-------~~~~~~~~~~i~~  251 (424)
                      +|.++|+++...+..........  .+++.+...|++|.+++        ..|.++++.+       .+++..+++.+++
T Consensus       191 ~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~pl~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~  260 (552)
T PRK09274        191 GVVYTHGMFEAQIEALREDYGIE--PGEIDLPTFPLFALFGP--------ALGMTSVIPDMDPTRPATVDPAKLFAAIER  260 (552)
T ss_pred             eEEecHHHHHHHHHHHHHHhCCC--CCceeeeccCHHHhhhh--------hhCCeEEecCcccccccccCHHHHHHHHHH
Confidence            99999999998877666555443  34889999999876543        3467777653       3688999999999


Q ss_pred             ccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCC-CCeEEecccCccCCCceeecCCC---
Q 014435          252 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQGYGMTETCAPISLENPL---  327 (424)
Q Consensus       252 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~---  327 (424)
                      +++|+++++|+++..|.+.......+++++|.+++||+++++++.+++++.++ ++++++.||+||+++++......   
T Consensus       261 ~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  340 (552)
T PRK09274        261 YGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILF  340 (552)
T ss_pred             cCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhc
Confidence            99999999999999998876655667899999999999999999999999986 47999999999988765543221   


Q ss_pred             ---C--CccCCCccccccCCcEEEEeeCC--------CCccCCCCCceeEEEecCCcchhh---------------hh--
Q 014435          328 ---V--GVRRSGSAGTLVAGVEAQIVSVD--------TLKPLPPNQLGEIWVRGPNVTPVF---------------EL--  377 (424)
Q Consensus       328 ---~--~~~~~~~~G~~~~~~~~~i~d~~--------~~~~~~~g~~Gel~v~~~~~~~gy---------------~~--  377 (424)
                         .  ......++|+|+++++++|+|++        ++++++.|+.|||+++|++++.||               ++  
T Consensus       341 ~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~  420 (552)
T PRK09274        341 ATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDV  420 (552)
T ss_pred             cccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCc
Confidence               0  01223478999999999999852        467899999999999999999999               23  


Q ss_pred             ccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          378 TVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       378 ~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ||+|||+|+++++|.+       | |+++|++|+|.+||++|.+||+|.+|+|+|
T Consensus       421 w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~  475 (552)
T PRK09274        421 WHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVG  475 (552)
T ss_pred             EEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEE
Confidence            9999999999999987       3 999999999999999999999999999985

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.1e-56  Score=435.42  Aligned_cols=403  Identities=29%  Similarity=0.444  Sum_probs=330.3

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      +...++. ..+++||+||.+++.++|..|.+. |+++|++|+++++|+++++++++||+++|++++|+++..+.+++.++
T Consensus        24 ~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  103 (546)
T PRK08314         24 PDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHY  103 (546)
T ss_pred             CCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHH
Confidence            3344443 445799999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCC----CCeEEEecC-CCcccc-cc-------------ccCCCcccchhhhhhccCCCC
Q 014435           92 VKDSNPKLVITVPELWDKVKDLN----LPAVLLGSK-DKVSSS-GL-------------ISRSSKIVSFHDLIELSGSVT  152 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~  152 (424)
                      ++.+++++++++++....+....    ...+++... ...... ..             ......+..+++......   
T Consensus       104 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  180 (546)
T PRK08314        104 VTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL---  180 (546)
T ss_pred             HHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccccccccccccHHHHhcccC---
Confidence            99999999999988766554431    122222110 000000 00             000112233444433211   


Q ss_pred             CCCCCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCc
Q 014435          153 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  232 (424)
Q Consensus       153 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  232 (424)
                      ........++++++++|||||||.||+|.++|+++...+.........  ..++++++.+|++|.+|+...++.++..|+
T Consensus       181 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~  258 (546)
T PRK08314        181 APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNS--TPESVVLAVLPLFHVTGMVHSMNAPIYAGA  258 (546)
T ss_pred             CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC--CCCceEEEEcCchHHHHHHHHHHHHHHcCC
Confidence            112334567899999999999999999999999999887765555444  344899999999999999878889999999


Q ss_pred             eEEecCCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecc
Q 014435          233 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  312 (424)
Q Consensus       233 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y  312 (424)
                      ++++.+.+++..+.+.++++++|++.++|.++..++........+++++|.+++||+++++++.+++.+.+ +.++++.|
T Consensus       259 ~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~Y  337 (546)
T PRK08314        259 TVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGY  337 (546)
T ss_pred             eEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHc-CCcEEecc
Confidence            99999989999999999999999999999999999877655566788999999999999999999999988 68999999


Q ss_pred             cCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----------------h
Q 014435          313 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----------------E  376 (424)
Q Consensus       313 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----------------~  376 (424)
                      |+||++.........  ....+++|.|.++++++|+|++++++++.|+.|||+++|+.++.||                +
T Consensus       338 G~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~  415 (546)
T PRK08314        338 GLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGK  415 (546)
T ss_pred             cccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCC
Confidence            999988766554333  2345789999999999999987899999999999999999999999                1


Q ss_pred             hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          377 LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       377 ~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +||+|||+|+++++|.+       | ++++|++|+|.+||++|.++|+|.+++|+|
T Consensus       416 ~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~  471 (546)
T PRK08314        416 RFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIA  471 (546)
T ss_pred             ceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEe
Confidence            39999999999999877       3 899999999999999999999999999875

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.8e-56  Score=441.89  Aligned_cols=396  Identities=21%  Similarity=0.202  Sum_probs=304.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEc
Q 014435           24 DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV  103 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~  103 (424)
                      .+||+||.++++++|..|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.++++.+++++++++
T Consensus        76 ~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~  155 (660)
T PLN02430         76 WKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQ  155 (660)
T ss_pred             EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEEC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchH-HHhcC-----CCCeEEEecCCCccccc-cccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          104 PELWD-KVKDL-----NLPAVLLGSKDKVSSSG-LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       104 ~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++... .+...     ....++........... .........++++++....... .......++|+++++|||||||.
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~iiyTSGTTG~  234 (660)
T PLN02430        156 DKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENP-SETNPPKPLDICTIMYTSGTSGD  234 (660)
T ss_pred             HHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCC-CCCCCcCcCceEEEEECCCCCCC
Confidence            75332 22211     11222222111000000 0000112345666654433211 11223457999999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhh---hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHcc
Q 014435          177 SKGVILTHKNFIAASLMISAHQE---LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR  253 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~  253 (424)
                      ||+|++||+++...+........   .....++++++++|++|.++... .+.++..|+++++... ++..+.+.+++++
T Consensus       235 PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~  312 (660)
T PLN02430        235 PKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELK  312 (660)
T ss_pred             CCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhC
Confidence            99999999999887665432211   11234589999999999999864 4567889999887654 7889999999999


Q ss_pred             ceEEEechHHHHHHHhcccc-------------------------------ccC--------------CCCCeeEEEecC
Q 014435          254 VTVWWVVPPIILALAKNSLV-------------------------------RKF--------------DISSLKLVGSGA  288 (424)
Q Consensus       254 ~t~~~~~p~~~~~l~~~~~~-------------------------------~~~--------------~~~~lr~~~~~g  288 (424)
                      +|++.++|.+++.+.+....                               ...              ..+++|.+++||
T Consensus       313 pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gg  392 (660)
T PLN02430        313 PTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGG  392 (660)
T ss_pred             CcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECC
Confidence            99999999999877642100                               000              015899999999


Q ss_pred             CCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeC-CCC-ccCCCCCceeEEE
Q 014435          289 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV-DTL-KPLPPNQLGEIWV  366 (424)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~-~~~~~g~~Gel~v  366 (424)
                      +++++++.+.++ .++++.+++.||+||+++..+...+.. ....+++|.|.++++++++|. +.+ .+++.+..|||++
T Consensus       393 a~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~v  470 (660)
T PLN02430        393 APLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICV  470 (660)
T ss_pred             CCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEe
Confidence            999999876555 444578999999999987766554332 345689999999999999873 333 4566677899999


Q ss_pred             ecCCcchhh------------hhccccCceEEEecCCce-------e-eEe-eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          367 RGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FFC-KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       367 ~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~~-~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++++.||            ++||+|||+|++++||++       | |+. +|++|+|.+||++|.+||.|.+|+|+|
T Consensus       471 rg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G  549 (660)
T PLN02430        471 RGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG  549 (660)
T ss_pred             cCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEe
Confidence            999999999            689999999999999988       3 775 799999999999999999999999986

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.7e-56  Score=434.36  Aligned_cols=382  Identities=20%  Similarity=0.254  Sum_probs=315.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|
T Consensus        66 ~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  145 (537)
T PRK13382         66 LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVI  145 (537)
T ss_pred             CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++.+....+.....     ..++....           ......++.+.....  ..  .....+++.++++|||||||.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~il~TSGTTG~  210 (537)
T PRK13382        146 YDEEFSATVDRALADCPQATRIVAWTD-----------EDHDLTVEVLIAAHA--GQ--RPEPTGRKGRVILLTSGTTGT  210 (537)
T ss_pred             EchhhHHHHHHHHhhccccceEEEecC-----------CcccccHHHHhhccC--cC--CCCCCCCCCeEEEECCCCCCC
Confidence            99876654433210     11111100           000112333322111  11  112346788999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|.++.............  ..+++++...|++|.+|+ ..++.++..|+++++...+++..+++.|+++++|+
T Consensus       211 PKgv~~s~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~  287 (537)
T PRK13382        211 PKGARRSGPGGIGTLKAILDRTPW--RAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATG  287 (537)
T ss_pred             CCEEEeccchHHHHHHHHHHhhCC--CCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEE
Confidence            999999998887765554444333  234889999999999998 47788899999999988899999999999999999


Q ss_pred             EEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCC
Q 014435          257 WWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG  334 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  334 (424)
                      +.++|+++..|++....  ...+++++|.+++||++++++++++|.+.+ +..+++.||+||++.++..... ......+
T Consensus       288 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~  365 (537)
T PRK13382        288 LAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPA-DLRAAPD  365 (537)
T ss_pred             EEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChh-HhccCCC
Confidence            99999999999876432  233567899999999999999999999998 4789999999998876554322 1234567


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh---------hhccccCceEEEecCCce-------e-eEe
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---------ELTVNCNLFSYFRSNDHN-------D-FFC  397 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy---------~~~~~TgD~g~~~~~g~~-------d-i~~  397 (424)
                      ++|+|+++++++|+| +++++++.|+.|||+++|+.++.||         ++||+|||+++++++|.+       | ++.
T Consensus       366 ~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~  444 (537)
T PRK13382        366 TAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVS  444 (537)
T ss_pred             CccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEeCCCcEEEeccccceeEE
Confidence            999999999999999 5889999999999999999999999         789999999999999987       3 899


Q ss_pred             eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          398 KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       398 ~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++|+|.+||..|.+||+|.+++|+|
T Consensus       445 ~G~~v~~~eIE~~l~~~~~V~~~~v~~  471 (537)
T PRK13382        445 GGENVYPIEVEKTLATHPDVAEAAVIG  471 (537)
T ss_pred             CCEEECHHHHHHHHHhCCCEeeEEEEc
Confidence            999999999999999999999999975

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.8e-55  Score=429.00  Aligned_cols=387  Identities=23%  Similarity=0.282  Sum_probs=317.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||+||.++++++|.+|++.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++
T Consensus        51 ~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li  130 (538)
T TIGR03208        51 VRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFV  130 (538)
T ss_pred             cceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchH-----HHhcC----C-CCeEEEecCCCccccccccCCCcccchhhhhhccCC-C-CC----CCCCCCCCCCEE
Q 014435          102 TVPELWD-----KVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS-V-TD----IPDVSVKQTDAA  165 (424)
Q Consensus       102 ~~~~~~~-----~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~~~~~~~~~~~  165 (424)
                      +++....     .....    . ...++.....            ....++..+..... . ..    .......+++++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  198 (538)
T TIGR03208       131 VPSVFRGFDHAAMARELQSKLPALRQVVVIDGD------------GDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVT  198 (538)
T ss_pred             EccccccccHHHHHHHHhccCCcceEEEEecCC------------CCcCHHHHhhccccccccccccccccCCCCCCCeE
Confidence            9876421     11111    1 1112221110            01122222211100 0 00    111234678999


Q ss_pred             EEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHH
Q 014435          166 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA  245 (424)
Q Consensus       166 ~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  245 (424)
                      +++|||||||.||+|+++|+++...+.........  ..++++++.+|++|.+|+...++.++..|+++++.+.+++..+
T Consensus       199 ~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~  276 (538)
T TIGR03208       199 QLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL--GGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARA  276 (538)
T ss_pred             EEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCC--CCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHH
Confidence            99999999999999999999998877665554443  3348999999999999987778899999999999988999999


Q ss_pred             HHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecC
Q 014435          246 LRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN  325 (424)
Q Consensus       246 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~  325 (424)
                      ++.++++++|++.++|.++..+..........++++|.+++||+++++++.+++.+.+ ++++++.||+||++++.....
T Consensus       277 ~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       277 AELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             HHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCc
Confidence            9999999999999999999998876544445678999999999999999999999988 699999999999887665443


Q ss_pred             CCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-----------hhccccCceEEEecCCce-
Q 014435          326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-----------ELTVNCNLFSYFRSNDHN-  393 (424)
Q Consensus       326 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-----------~~~~~TgD~g~~~~~g~~-  393 (424)
                      .........++|+|+++++++|+| +++++++.|+.|||+++|+.++.||           ++||+|||+|+++++|.+ 
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~  434 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDAEGYIR  434 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEECCCCcEE
Confidence            221122345789999999999999 6889999999999999999999999           469999999999999987 


Q ss_pred             ------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            | ++.+|++|+|.+||++|.+||+|.+++|+|
T Consensus       435 ~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~  472 (538)
T TIGR03208       435 INGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVA  472 (538)
T ss_pred             EEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEe
Confidence                  3 889999999999999999999999999975

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-56  Score=429.76  Aligned_cols=382  Identities=19%  Similarity=0.236  Sum_probs=314.6

Q ss_pred             ecCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           13 RSLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        13 ~~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      .++..++. ..+++||.||.++++++|++|.+.|. +|++|+++++|++++++++|||+++|++++|+++.++.+++.++
T Consensus        14 ~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~   92 (487)
T PRK07638         14 QPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKER   92 (487)
T ss_pred             CCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHH
Confidence            34445443 34579999999999999999999884 79999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435           92 VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      ++.+++++++++......+.......+...                  .+.+......  ..........+++++++|||
T Consensus        93 ~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TS  152 (487)
T PRK07638         93 LAISNADMIVTERYKLNDLPDEEGRVIEID------------------EWKRMIEKYL--PTYAPIENVQNAPFYMGFTS  152 (487)
T ss_pred             HHhCCCCEEEEecccccchhhccceEEEeh------------------hhhhhhhhcc--ccccccccCCCCcEEEEeCC
Confidence            999999999999865544432221111110                  1111111111  11111222356789999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK  251 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~  251 (424)
                      ||||.||+|+++|+++...+.........  ..+++++...|++|..++ ..++.++..|+++++.+.+++..+++.+++
T Consensus       153 GtTG~PKgv~~s~~~~~~~~~~~~~~~~~--~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~  229 (487)
T PRK07638        153 GSTGKPKAFLRAQQSWLHSFDCNVHDFHM--KREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKFIPNQVLDKLET  229 (487)
T ss_pred             CCCCCCcEEEEecHHHHHHHHHHHHhcCc--CCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCCCHHHHHHHHHH
Confidence            99999999999999998877665544443  344899999999998877 477889999999999999999999999999


Q ss_pred             ccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCcc
Q 014435          252 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR  331 (424)
Q Consensus       252 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~  331 (424)
                      +++|++.++|+++..|.+...    ...+.+.++++|+++++++.+++.+.++++++++.||+||++..+.... .....
T Consensus       230 ~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~  304 (487)
T PRK07638        230 ENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-EESER  304 (487)
T ss_pred             cCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-cccCC
Confidence            999999999999999987732    1345666788999999999999999998899999999999987655543 22345


Q ss_pred             CCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce------
Q 014435          332 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN------  393 (424)
Q Consensus       332 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~------  393 (424)
                      ..+++|+|+++++++|+| +++.+++.|+.|||+++|+.++.||            ++||+|||+|+++++|.+      
T Consensus       305 ~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~  383 (487)
T PRK07638        305 RPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGRE  383 (487)
T ss_pred             CCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecC
Confidence            677999999999999999 6899999999999999999999999            569999999999999987      


Q ss_pred             -e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       | ++.+|++|+|.+||+++.+||+|.+|+|+|
T Consensus       384 ~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~  416 (487)
T PRK07638        384 KNMILFGGINIFPEEIESVLHEHPAVDEIVVIG  416 (487)
T ss_pred             CCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence             3 899999999999999999999999999985

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-55  Score=431.52  Aligned_cols=394  Identities=26%  Similarity=0.361  Sum_probs=330.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++
T Consensus        33 ~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  112 (523)
T PRK08316         33 GDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAF  112 (523)
T ss_pred             CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCC----eEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          101 ITVPELWDKVKDLNLP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      +++++....+......    ........     ...........++++.....  ..........+++++++|||||||.
T Consensus       113 i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~  185 (523)
T PRK08316        113 LVDPALAPTAEAALALLPVDTLILSLVL-----GGREAPGGWLDFADWAEAGS--VAEPDVELADDDLAQILYTSGTESL  185 (523)
T ss_pred             EEccchHHHHHHHhhhcCccceeeeecc-----cccccccchhhHHHHHhcCC--CccCccCCCCCCeEEEEeCCCCCCC
Confidence            9998877665433211    11110000     00011223344444443222  1223345567899999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|+++.............  ..+++++..+|++|.+++...++.++..|+++++.+..++..+++.++++++|+
T Consensus       186 PK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~  263 (523)
T PRK08316        186 PKGAMLTHRALIAEYVSCIVAGDM--SADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITS  263 (523)
T ss_pred             CcEEEEecHHHHHHHHHHHHHhCC--CCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeE
Confidence            999999999998876655554444  334899999999999998766777899999999998889999999999999999


Q ss_pred             EEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcc
Q 014435          257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA  336 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~  336 (424)
                      +.++|+++..+.+.......+++++|.+++||++++.++.+.+++.+++.++++.||+||++.+.....+.......+++
T Consensus       264 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  343 (523)
T PRK08316        264 FFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSA  343 (523)
T ss_pred             EEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCc
Confidence            99999999999988766666788999999999999999999999999889999999999998876654443334456789


Q ss_pred             ccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce------e--eE
Q 014435          337 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN------D--FF  396 (424)
Q Consensus       337 G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~------d--i~  396 (424)
                      |+|+++++++|+| +++++++.|+.|||+++|+.++.+|            ++||+|||+|+++++|.+      |  ++
T Consensus       344 G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~  422 (523)
T PRK08316        344 GRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK  422 (523)
T ss_pred             ccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEEE
Confidence            9999999999999 6789999999999999999999998            569999999999999987      3  88


Q ss_pred             eeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          397 CKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       397 ~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++|++|+|.+||+.|.++|+|.+++|+|
T Consensus       423 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~  450 (523)
T PRK08316        423 TGGENVASREVEEALYTHPAVAEVAVIG  450 (523)
T ss_pred             eCCeEECHHHHHHHHHhCCChheEeEec
Confidence            9999999999999999999999999875

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-55  Score=428.07  Aligned_cols=379  Identities=23%  Similarity=0.336  Sum_probs=318.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL   99 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~   99 (424)
                      .++.+||+||.++++++|++|++ .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++++++++
T Consensus        24 ~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (496)
T PRK06839         24 EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTV  103 (496)
T ss_pred             CCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceE
Confidence            46789999999999999999985 79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccchHHHhcCCCCe---EEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          100 VITVPELWDKVKDLNLPA---VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       100 ii~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++++++....+.......   ..+.                +.++++......    .......++++++++|||||||.
T Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGTTG~  163 (496)
T PRK06839        104 LFVEKTFQNMALSMQKVSYVQRVIS----------------ITSLKEIEDRKI----DNFVEKNESASFIICYTSGTTGK  163 (496)
T ss_pred             EEEcHHHHHHHHHhhhccCcceEEE----------------ecchHhhhccCC----CCCCCCCCCCcEEEEeCCCCCCC
Confidence            999987766554432110   0000                001122221111    11223456889999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|.++............  ...+++++..+|++|.+|+....+.++..|+++++++.+++..+++.++++++|+
T Consensus       164 PK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~  241 (496)
T PRK06839        164 PKGAVLTQENMFWNALNNTFAID--LTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTV  241 (496)
T ss_pred             CcEEEEEhHHHHHHHHHHHHHcC--CCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeE
Confidence            99999999998765444333333  3345899999999999999777788999999999998899999999999999999


Q ss_pred             EEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcc
Q 014435          257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA  336 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~  336 (424)
                      +.++|.+++.+++.......+++++|.+++||+++++++.+.+++.  ++++.+.||+||++...............+++
T Consensus       242 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  319 (496)
T PRK06839        242 VMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVGSI  319 (496)
T ss_pred             EEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCCCC
Confidence            9999999999998876666678999999999999999999999987  79999999999998755544333334567899


Q ss_pred             ccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------e-eE
Q 014435          337 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FF  396 (424)
Q Consensus       337 G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~  396 (424)
                      |+|+++++++|+| ++++.++.|+.|||+++|+.++.||            ++||+|||+|+++++|.+       | ++
T Consensus       320 G~p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~  398 (496)
T PRK06839        320 GKPVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMII  398 (496)
T ss_pred             cccCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEE
Confidence            9999999999999 5777799999999999999999999            578999999999999876       3 88


Q ss_pred             eeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          397 CKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       397 ~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      .+|++|+|.+||++|.++|+|.+|+|+|
T Consensus       399 ~~G~~v~p~~iE~~l~~~~~v~~~~v~~  426 (496)
T PRK06839        399 SGGENIYPLEVEQVINKLSDVYEVAVVG  426 (496)
T ss_pred             ECCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            9999999999999999999999999985

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.8e-55  Score=437.38  Aligned_cols=385  Identities=22%  Similarity=0.275  Sum_probs=300.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCC-----HHHHHHHHHhcC
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT-----VSELSKQVKDSN   96 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-----~~~i~~~l~~~~   96 (424)
                      ++.+||+||.++++++|++|.++|+++||+|+++++|+++|++++|||+++|++++|+++.++     .+++.++++.++
T Consensus        67 ~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~  146 (614)
T PRK08180         67 WRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLT  146 (614)
T ss_pred             eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCC
Confidence            357999999999999999999999999999999999999999999999999999999999988     799999999999


Q ss_pred             CeEEEEccc--chHHHhcCCC-C-eEEEecCCCccccccccCCCcccchhhhhhccCCCC-CCCCCCCCCCCEEEEecCC
Q 014435           97 PKLVITVPE--LWDKVKDLNL-P-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT-DIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        97 ~~~ii~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TS  171 (424)
                      ++++|+++.  ....+..... . .++.....        ........+++++....... ........++|+++|+|||
T Consensus       147 ~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTS  218 (614)
T PRK08180        147 PGLVFADDGAAFARALAAVVPADVEVVAVRGA--------VPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTS  218 (614)
T ss_pred             CcEEEEcCHHHHHHHHhhhccCCceEEEecCC--------CCCcccccHHHHhccccccchhhhccCCCcCceEEEEECC
Confidence            999999864  2222222111 1 11111110        00011234555443221100 1111234578999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CC---HHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FD---IEMALR  247 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~---~~~~~~  247 (424)
                      ||||.||+|++||+++.................++++++.+|++|.+|+...++.++..|+++++.+. ++   ...+++
T Consensus       219 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~  298 (614)
T PRK08180        219 GSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLR  298 (614)
T ss_pred             CCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHH
Confidence            99999999999999998877665544433222448999999999999987778889999999998753 33   357788


Q ss_pred             HHHHccceEEEechHHHHHHHhcccc----ccCCCCCeeEEEecCCCCCHHHHHHHHHh----CC-CCeEEecccCccCC
Q 014435          248 AIEKYRVTVWWVVPPIILALAKNSLV----RKFDISSLKLVGSGAAPLGKELMEDCQKN----IP-GATIFQGYGMTETC  318 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~~~lr~~~~~g~~~~~~~~~~~~~~----~~-~~~~~~~yG~tE~~  318 (424)
                      .++++++|+++++|.++..|++....    ....++++|.+++||+++++++.+++++.    ++ ++.+++.||+||++
T Consensus       299 ~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~  378 (614)
T PRK08180        299 NLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETA  378 (614)
T ss_pred             HHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccC
Confidence            89999999999999999988764321    23357899999999999999999999874    32 37899999999998


Q ss_pred             CceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceE
Q 014435          319 APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFS  385 (424)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g  385 (424)
                      ++++.....  ..+.+++|+|+++++++|+|+        |..|||+++|++++.||             ++||+|||+|
T Consensus       379 ~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg  448 (614)
T PRK08180        379 PSATFTTGP--LSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAV  448 (614)
T ss_pred             CceEecccc--cCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceE
Confidence            766654333  346789999999999999983        44699999999999999             4799999999


Q ss_pred             EE----ecCCce-------e-eE-eeeeeeC--hhhHHHHHhcCCCcccceecC
Q 014435          386 YF----RSNDHN-------D-FF-CKLFQVA--PAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       386 ~~----~~~g~~-------d-i~-~~G~~v~--~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++    +++|.+       | ++ .+|++|+  |.|+|.++.+||.|++|+|+|
T Consensus       449 ~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g  502 (614)
T PRK08180        449 RFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITG  502 (614)
T ss_pred             EecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEc
Confidence            99    356666       3 55 5798776  788899999999999999986

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-55  Score=427.63  Aligned_cols=393  Identities=27%  Similarity=0.417  Sum_probs=328.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+++||+||.+.+.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++
T Consensus        27 ~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i  106 (513)
T PRK07656         27 GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKAL  106 (513)
T ss_pred             CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEE
Confidence            44679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          101 ITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       101 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      +++++.........     ...++........     ........++++.....  ...+.....++++++++|||||||
T Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG  179 (513)
T PRK07656        107 FVLGLFLGVDYSATTRLPALEHVVICETEEDD-----PHTEKMKTFTDFLAAGD--PAERAPEVDPDDVADILFTSGTTG  179 (513)
T ss_pred             EEchhhHHHHHHHHhccCCccEEEEEcCcccc-----cCccccccHHHHHhcCC--CCCCcCCCCCCceEEEEeCCCCCC
Confidence            99987655443321     1122222111110     00112234455543322  112233457789999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccce
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  255 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  255 (424)
                      .||+|.++|.++.............  ...+++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|
T Consensus       180 ~PK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  257 (513)
T PRK07656        180 RPKGAMLTHRQLLSNAADWAEYLGL--TEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERIT  257 (513)
T ss_pred             CCCEEEEecHHHHHHHHHHHHhhCC--CCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCe
Confidence            9999999999998877665555444  33489999999999999987789999999999998888999999999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCC-eEEecccCccCCCceeecCCCCC-ccCC
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA-TIFQGYGMTETCAPISLENPLVG-VRRS  333 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~~-~~~~  333 (424)
                      ++.++|.++..+.+........++++|.+++||+++++++.+++++.++ . .+++.||+||+++++........ ....
T Consensus       258 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  336 (513)
T PRK07656        258 VLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELG-VDIVLTGYGLSEASGVTTFNRLDDDRKTVA  336 (513)
T ss_pred             EEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcC-CCceEeEEccccCCCceeecCccccccccC
Confidence            9999999999999887766667899999999999999999999999985 6 89999999999877766544321 1226


Q ss_pred             CccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------
Q 014435          334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------  393 (424)
Q Consensus       334 ~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------  393 (424)
                      +++|.|+++++++|+| +++++++.|+.|||+++|+.++.||             ++||+|||+|+++++|.+       
T Consensus       337 ~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~  415 (513)
T PRK07656        337 GTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKK  415 (513)
T ss_pred             CCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEeccc
Confidence            7899999999999999 6899999999999999999999999             578999999999999876       


Q ss_pred             e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      | ++++|++++|.+||++|.++|+|.+++|+|
T Consensus       416 d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~  447 (513)
T PRK07656        416 DMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIG  447 (513)
T ss_pred             ceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEe
Confidence            3 899999999999999999999999999874

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.5e-55  Score=429.09  Aligned_cols=406  Identities=23%  Similarity=0.406  Sum_probs=319.9

Q ss_pred             cCCCCCCC-CCCCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           14 SLRPPLVL-PSDPSFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        14 ~~~~~~~~-~~~~Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      ++.+++.. .+.+||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++
T Consensus        38 p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~  117 (562)
T PRK05677         38 ADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQ  117 (562)
T ss_pred             CCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHH
Confidence            44555443 4579999999999999999997 599999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCC----CCeEEEecCCCccc-cc---c------------ccCCCcccchhhhhhccCCC
Q 014435           92 VKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSS-SG---L------------ISRSSKIVSFHDLIELSGSV  151 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~---~------------~~~~~~~~~~~~~~~~~~~~  151 (424)
                      +++++++++|++.+....+..+.    .+.++......... ..   .            .........+.+.+..... 
T Consensus       118 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  196 (562)
T PRK05677        118 FNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAG-  196 (562)
T ss_pred             HhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCCcccccHHHHHhcCCC-
Confidence            99999999999876654433221    12222211100000 00   0            0000112233333322211 


Q ss_pred             CCCCCCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhc-cCCCcEEEEecchHHHHHHHHHHHHHhhc
Q 014435          152 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCVLPMFHVFGLSVILYDQLQK  230 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  230 (424)
                      .........++++++++|||||||.||+|+++|+++.............. ....+.+++.+|++|.+++...++..+..
T Consensus       197 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~  276 (562)
T PRK05677        197 QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLI  276 (562)
T ss_pred             CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHc
Confidence            11122334679999999999999999999999999987655443332211 22237889999999999987677777888


Q ss_pred             CceEEecC-CCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEE
Q 014435          231 GNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  309 (424)
Q Consensus       231 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (424)
                      |.+.++.+ ..++..+++.++++++|+++++|+++..+..........++++|.+++||+++++++.+.|.+.+ +++++
T Consensus       277 g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~  355 (562)
T PRK05677        277 GNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVT-GCAIC  355 (562)
T ss_pred             CCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHc-CCCee
Confidence            87766554 57899999999999999999999999999876554455678999999999999999999999987 69999


Q ss_pred             ecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------h
Q 014435          310 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------E  376 (424)
Q Consensus       310 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~  376 (424)
                      +.||+||+++++......  ...++++|.|+++++++|+| ++++.++.|+.|||+++|+.++.||             +
T Consensus       356 ~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~  432 (562)
T PRK05677        356 EGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSD  432 (562)
T ss_pred             ccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCC
Confidence            999999988766554332  34567899999999999999 5789999999999999999999999             5


Q ss_pred             hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          377 LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       377 ~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +||+|||+|+++++|.+       | ++.+|++|+|.+||++|.+||+|.+++|+|
T Consensus       433 g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g  488 (562)
T PRK05677        433 GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIG  488 (562)
T ss_pred             CcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEe
Confidence            79999999999999987       3 889999999999999999999999999985

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-55  Score=438.04  Aligned_cols=396  Identities=22%  Similarity=0.294  Sum_probs=309.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..++++++++++|
T Consensus        82 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li  161 (629)
T PRK10524         82 ERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIV  161 (629)
T ss_pred             eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEE
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecccch---------HHHh---c-C--CCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435          102 TVPELW---------DKVK---D-L--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus       102 ~~~~~~---------~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      +++...         ..+.   . .  ....+++........ .  ........+.++...... ...+.....++++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~  237 (629)
T PRK10524        162 SADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-A--RVAGRDVDYATLRAQHLG-ARVPVEWLESNEPSY  237 (629)
T ss_pred             EccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-C--cccCCcccHHHHHhcCCC-CCCCceeeCCCCceE
Confidence            976421         1111   1 1  112222221110000 0  000112234444332111 111222346789999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHHHHH-HhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CC
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FD  241 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~  241 (424)
                      ++|||||||.||+|+++|.++....... ......  ..++++++..|+.|..+....++.++..|+++++.+.    .+
T Consensus       238 il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~  315 (629)
T PRK10524        238 ILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGG--KAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPD  315 (629)
T ss_pred             EEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCC--CCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCC
Confidence            9999999999999999999875443322 222222  3348999999999998876678899999999998752    47


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCC
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA  319 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  319 (424)
                      +..+++.++++++|+++++|++++.|.+....  ...++++||.+++||+++++++.+++.+.+ ++++++.||+||++.
T Consensus       316 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~  394 (629)
T PRK10524        316 AGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGW  394 (629)
T ss_pred             hHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccc
Confidence            89999999999999999999999998875432  345678999999999999999999999988 589999999999875


Q ss_pred             ceeecCCC--CCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCC---cchhh----------------hhc
Q 014435          320 PISLENPL--VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN---VTPVF----------------ELT  378 (424)
Q Consensus       320 ~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~---~~~gy----------------~~~  378 (424)
                      .+....+.  ....+.+++|+|+++++++|+|++++++++.|+.|||+++||.   ++.+|                ++|
T Consensus       395 ~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (629)
T PRK10524        395 PILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQV  474 (629)
T ss_pred             hhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcE
Confidence            33332221  1134567899999999999999558999999999999999984   34444                368


Q ss_pred             cccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          379 VNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       379 ~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+|||+|+++++|.+       | ++++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       475 ~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg  528 (629)
T PRK10524        475 YSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVG  528 (629)
T ss_pred             EEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEc
Confidence            999999999999987       3 999999999999999999999999999985

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.7e-55  Score=430.42  Aligned_cols=402  Identities=28%  Similarity=0.394  Sum_probs=324.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++
T Consensus        54 ~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  133 (573)
T PRK05605         54 FGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVA  133 (573)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEE
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC----CCeEEEecCCC-cccc----------c-------cccCCCcccchhhhhhccCCC--CCCCC
Q 014435          101 ITVPELWDKVKDLN----LPAVLLGSKDK-VSSS----------G-------LISRSSKIVSFHDLIELSGSV--TDIPD  156 (424)
Q Consensus       101 i~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~----------~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~  156 (424)
                      |++++....+..+.    .+.++...... ....          .       ..........++++.......  .....
T Consensus       134 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (573)
T PRK05605        134 IVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSH  213 (573)
T ss_pred             EechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccCCCcceeHHHHhhccccccccccCC
Confidence            99887655543322    11111111000 0000          0       000011233444444321110  00122


Q ss_pred             CCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEe
Q 014435          157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  236 (424)
Q Consensus       157 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~  236 (424)
                      .....+++++++|||||||.||+|.++|+++...+.............++++++.+|++|.+|+...++.++..|+++++
T Consensus       214 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~  293 (573)
T PRK05605        214 PRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVL  293 (573)
T ss_pred             CCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEE
Confidence            33567899999999999999999999999988776543332221123358999999999999987777788999999999


Q ss_pred             cCCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCcc
Q 014435          237 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  316 (424)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE  316 (424)
                      .+.+++..+++.++++++|++.++|.+++.|.+.......+++++|.+++||+++++++.+.+.+.+ +..+++.||+||
T Consensus       294 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE  372 (573)
T PRK05605        294 LPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTE  372 (573)
T ss_pred             eCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHh-CCCeecccccch
Confidence            9888999999999999999999999999999987766666789999999999999999999999887 689999999999


Q ss_pred             CCCceeecCCCCCccCCCccccccCCcEEEEeeCCC-CccCCCCCceeEEEecCCcchhh------------hhccccCc
Q 014435          317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNL  383 (424)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD  383 (424)
                      ++++++..... .....+++|+|+++++++|+|+++ +++++.|+.|||+++|+.++.||            ++||+|||
T Consensus       373 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD  451 (573)
T PRK05605        373 TSPIIVGNPMS-DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGD  451 (573)
T ss_pred             hchhhhcCCcc-cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCC
Confidence            98766654332 134567899999999999999766 68999999999999999999999            35999999


Q ss_pred             eEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          384 FSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       384 ~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|+++++|.+       | ++.+|++|+|.+||+++.+||.|.+++|+|
T Consensus       452 ~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~  500 (573)
T PRK05605        452 VVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVG  500 (573)
T ss_pred             EEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEe
Confidence            9999999977       3 889999999999999999999999999985

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-55  Score=441.20  Aligned_cols=389  Identities=19%  Similarity=0.240  Sum_probs=300.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||+||.++++++|+.|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++
T Consensus       118 ~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~l  197 (700)
T PTZ00216        118 ETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAI  197 (700)
T ss_pred             CceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccC--CCCCCCCCCCCCCCEEEEecCCCC
Q 014435          101 ITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG--SVTDIPDVSVKQTDAAALLYSSGT  173 (424)
Q Consensus       101 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGt  173 (424)
                      +++.+....+....     ....++..+.....  .........++++++....  ...........++|+++++|||||
T Consensus       198 v~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGT  275 (700)
T PTZ00216        198 VCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS--VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGT  275 (700)
T ss_pred             EECHHHHHHHHHhhhhccCCceEEEEECCCccc--cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCC
Confidence            99876554432211     11112221111000  0011223456777665441  111111234468999999999999


Q ss_pred             CCCcchhhhcHHHHHHHHHHHHhhhhh--c-cCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHH---
Q 014435          174 TGVSKGVILTHKNFIAASLMISAHQEL--V-GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR---  247 (424)
Q Consensus       174 TG~pK~v~~t~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~---  247 (424)
                      ||.||||++||+++.+.+.........  . ...++++++++|++|.++.. .....+..|+++++.   ++..+.+   
T Consensus       276 TG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~  351 (700)
T PTZ00216        276 TGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFA  351 (700)
T ss_pred             CCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhc
Confidence            999999999999998876655433211  1 13458999999999999985 445567888887764   4455544   


Q ss_pred             ----HHHHccceEEEechHHHHHHHhccccc-----------------------------------------cCCCCCee
Q 014435          248 ----AIEKYRVTVWWVVPPIILALAKNSLVR-----------------------------------------KFDISSLK  282 (424)
Q Consensus       248 ----~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------------------~~~~~~lr  282 (424)
                          .++++++|++.++|.+++.+.+.....                                         ....+++|
T Consensus       352 ~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr  431 (700)
T PTZ00216        352 RPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVR  431 (700)
T ss_pred             cccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEE
Confidence                688999999999999998876431100                                         00015899


Q ss_pred             EEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCC-CccCCCCCc
Q 014435          283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQL  361 (424)
Q Consensus       283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~  361 (424)
                      .+++||+++++++.+.++..+ + .+++.||+||+++.++.....  ....+++|+|+++++++|+|.++ ....++++.
T Consensus       432 ~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~  507 (700)
T PTZ00216        432 AMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR  507 (700)
T ss_pred             EEEECCCCCCHHHHHHHHHHh-h-hHhhccCcccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCC
Confidence            999999999999998887776 5 999999999998766554433  45678999999999999999543 223456678


Q ss_pred             eeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e-eE-eeeeeeChhhHHHHHhcCCCccc
Q 014435          362 GEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D-FF-CKLFQVAPAELEGLLVSHPEILD  419 (424)
Q Consensus       362 Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d-i~-~~G~~v~~~~iE~~l~~~p~V~~  419 (424)
                      |||+++|+.++.||             ++||+|||+|++++||.+       | ++ .+|++|+|.+||+++.+||.|.+
T Consensus       508 GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~  587 (700)
T PTZ00216        508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVP  587 (700)
T ss_pred             ceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCccc
Confidence            99999999999999             679999999999999988       3 76 79999999999999999999997

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.8e-54  Score=421.56  Aligned_cols=389  Identities=25%  Similarity=0.361  Sum_probs=322.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++
T Consensus        39 ~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i  118 (542)
T PRK07786         39 LGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVV  118 (542)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          101 ITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       101 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      ++++.....+....     ...++...+         ........++++......  ..+......+++++++|||||||
T Consensus       119 i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG  187 (542)
T PRK07786        119 VTEAALAPVATAVRDIVPLLSTVVVAGG---------SSDDSVLGYEDLLAEAGP--AHAPVDIPNDSPALIMYTSGTTG  187 (542)
T ss_pred             EEccchHHHHHHhhhccCccceEEEecC---------CCcccccCHHHHhhccCC--CCCCCCCCCCCeEEEEeCCCCCc
Confidence            99987665543321     111222111         011122345555433221  12223445678999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHHHcc
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYR  253 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~  253 (424)
                      .||+|.++|+++...+......... ...++++++..|++|.+|+ ..++.++..|+++++.+  .+++..+++.+++++
T Consensus       188 ~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~  265 (542)
T PRK07786        188 RPKGAVLTHANLTGQAMTCLRTNGA-DINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEK  265 (542)
T ss_pred             cchhhhhhHHHHHHHHHHHHHhcCC-CCCCceEEEecchHHHHHH-HHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcC
Confidence            9999999999998776655444433 2345899999999999998 47888999999999864  579999999999999


Q ss_pred             ceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCC
Q 014435          254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS  333 (424)
Q Consensus       254 ~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~  333 (424)
                      +|+++++|+++..+.......... .++|.+++||+++++++++++.+.+++.++++.||+||++++.+...........
T Consensus       266 ~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~  344 (542)
T PRK07786        266 VTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKL  344 (542)
T ss_pred             CeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccC
Confidence            999999999999998875544333 3799999999999999999999999889999999999998765543332223455


Q ss_pred             CccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------e
Q 014435          334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       334 ~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      +++|+|++++.++|+| ++++.++.|+.|||+++|+.++.||            ++||+|||+++++++|.+       |
T Consensus       345 ~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d  423 (542)
T PRK07786        345 GSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKD  423 (542)
T ss_pred             CCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEecccc
Confidence            7899999999999999 6889999999999999999999999            469999999999999876       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       ++++|++|+|.+||++|.+||.|.+|+|+|
T Consensus       424 ~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~  454 (542)
T PRK07786        424 MIISGGENIYCAEVENVLASHPDIVEVAVIG  454 (542)
T ss_pred             eEEeCCEEECHHHHHHHHHhCCCccEEEEEe
Confidence             899999999999999999999999999975

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-56  Score=386.01  Aligned_cols=388  Identities=23%  Similarity=0.272  Sum_probs=329.7

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeE
Q 014435           20 VLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL   99 (424)
Q Consensus        20 ~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~   99 (424)
                      +.++.|||+||.++++++|..|++.||++||+|.+.+||..+|++++||++++|+.+|.-=|.....+|...++..+++.
T Consensus        49 d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~  128 (542)
T COG1021          49 DGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAAL  128 (542)
T ss_pred             cCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchh
Confidence            45577999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             EEEcccc--------hHHH-hcC-CCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEec
Q 014435          100 VITVPEL--------WDKV-KDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY  169 (424)
Q Consensus       100 ii~~~~~--------~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  169 (424)
                      +|.+...        ...+ .+. ..+.+++..+..           .....+..+..... ...+..+.+++++++...
T Consensus       129 ~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~-----------~~~~~~~~~~~~a~-~~~~a~~~~~~~vA~fqL  196 (542)
T COG1021         129 LIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAE-----------HPSVLEAALCHPAG-LFTPAPPADAGEVAFFQL  196 (542)
T ss_pred             eeechhhcccCcHHHHHHHHhhCCcceEEEEccCCC-----------CcchhhhhhhCccc-cCCcCCCCCCCceEEEEe
Confidence            9998532        1111 111 124444442211           11112222221111 233345667889999999


Q ss_pred             CCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHH-HHHHHhhcCceEEecCCCCHHHHHHH
Q 014435          170 SSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKFDIEMALRA  248 (424)
Q Consensus       170 TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~  248 (424)
                      +.||||.||.|++||..+..++......+++...  .++++.+|..|.+-+.. ..++.+..|+++|+.+..++...+.+
T Consensus       197 SGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~--tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~l  274 (542)
T COG1021         197 SGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQ--TVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPL  274 (542)
T ss_pred             cCCCCCCCccccccccceeeeeeehhhhhCcCcc--ceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHH
Confidence            9999999999999999999988888888887665  99999999999987753 37888999999999999999999999


Q ss_pred             HHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      |+++++|+...+|.+...++.+.+....+++|||.+-+||+.+++.+.+++...+ ||.+-+++||.| |.+....-.+.
T Consensus       275 Ierh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAE-GLvnyTRLDDp  352 (542)
T COG1021         275 IERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAE-GLVNYTRLDDP  352 (542)
T ss_pred             HHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhh-hhhcccccCCc
Confidence            9999999999999999999999988889999999999999999999999999999 799999999999 43443333333


Q ss_pred             CccCCCcccccc-CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-
Q 014435          329 GVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-  393 (424)
Q Consensus       329 ~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-  393 (424)
                      .+.-..+.|+|+ |.-+++|+| ++|+++++||+|+|..+||...+||             +++|+|||+.+++++|.+ 
T Consensus       353 ~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~  431 (542)
T COG1021         353 PEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLV  431 (542)
T ss_pred             hHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEE
Confidence            355566889998 677999999 8999999999999999999999999             889999999999999998 


Q ss_pred             ------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            | |+.+|+||-.+|||+.|..||.|.+|++|+
T Consensus       432 V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVa  469 (542)
T COG1021         432 VEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVA  469 (542)
T ss_pred             EEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhc
Confidence                  5 999999999999999999999999999874

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-54  Score=434.59  Aligned_cols=394  Identities=19%  Similarity=0.208  Sum_probs=307.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.++++++|+.|++.|+++||+|++++||++++++++|||+++|++++|+++.++.+++..++++++++++|+
T Consensus       207 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit  286 (728)
T PLN03052        207 NRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFT  286 (728)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchH---------HHhcCC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCC---CCCCCCCCCCCCEEEEec
Q 014435          103 VPELWD---------KVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV---TDIPDVSVKQTDAAALLY  169 (424)
Q Consensus       103 ~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~  169 (424)
                      ++....         .+.... ...+++........   .........+++++......   .........++++++|+|
T Consensus       287 ~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~Ily  363 (728)
T PLN03052        287 QDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVR---VKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILF  363 (728)
T ss_pred             cCccccCCcccchHHHHHHhcCCcEEEEeCCCCccc---cccccCCccHHHHHhccccccccccccccccCCCCcEEEEe
Confidence            875432         111111 12222221110000   00011223455554322110   111122235689999999


Q ss_pred             CCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CCHHHHHHH
Q 014435          170 SSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRA  248 (424)
Q Consensus       170 TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~  248 (424)
                      ||||||.||+|+++|.+++............  ..++++++..|+.|+.+.. .++.+|..|+++++.+. .++..+++.
T Consensus       364 TSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l--~~~d~~~~~~~l~w~~g~~-~v~~~L~~Gat~vl~~g~p~~~~~~~~  440 (728)
T PLN03052        364 SSGTTGEPKAIPWTQLTPLRAAADAWAHLDI--RKGDIVCWPTNLGWMMGPW-LVYASLLNGATLALYNGSPLGRGFAKF  440 (728)
T ss_pred             cCCCCCCCceEEECchHHHHHHHHHHHhcCC--CCCcEEEECCCcHHHhHHH-HHHHHHHhCCEEEEeCCCCCCChHHHH
Confidence            9999999999999999876654443333333  3449999999999999984 67799999999999864 456789999


Q ss_pred             HHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      ++++++|++.++|++++.|.+.......++++||.++++|++++++...++.+.++...+++.||+||+++.+....+..
T Consensus       441 i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~  520 (728)
T PLN03052        441 VQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQ  520 (728)
T ss_pred             HHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCC
Confidence            99999999999999999998775445667899999999999999999888888764468999999999876544333221


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCccCCCCC--ceeEEEecCCcc-----------hhh-h------h--ccccCceEE
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--LGEIWVRGPNVT-----------PVF-E------L--TVNCNLFSY  386 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~~~~~~-----------~gy-~------~--~~~TgD~g~  386 (424)
                       ....+++|.|.+|++++|+| ++|++++.|+  .|||+++++...           ..| .      +  ||+|||+++
T Consensus       521 -~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~  598 (728)
T PLN03052        521 -PQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFE  598 (728)
T ss_pred             -CCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEE
Confidence             34567899999999999999 7899999985  699999765321           123 1      2  789999999


Q ss_pred             EecCCce------e--eEeeeeeeChhhHHHHHh-cCCCcccceecC
Q 014435          387 FRSNDHN------D--FFCKLFQVAPAELEGLLV-SHPEILDAVVIP  424 (424)
Q Consensus       387 ~~~~g~~------d--i~~~G~~v~~~~iE~~l~-~~p~V~~a~v~g  424 (424)
                      ++++|.+      |  |+++|++|+|.|||++|. .||+|.||+|+|
T Consensus       599 ~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg  645 (728)
T PLN03052        599 RTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIG  645 (728)
T ss_pred             ECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEe
Confidence            9999987      3  999999999999999995 799999999986

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3.8e-54  Score=421.59  Aligned_cols=386  Identities=22%  Similarity=0.255  Sum_probs=314.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+++||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++
T Consensus        45 ~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~l  124 (527)
T TIGR02275        45 GNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALY  124 (527)
T ss_pred             CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchH--------HHhcCC--CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecC
Q 014435          101 ITVPELWD--------KVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYS  170 (424)
Q Consensus       101 i~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  170 (424)
                      +++.....        .+....  ...+......        .   ........+....  ...+.....++++++++||
T Consensus       125 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~T  191 (527)
T TIGR02275       125 IIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQT--------R---VEAELFLWLESPA--EPVKFPPTKSDEVAFFQLS  191 (527)
T ss_pred             EEcCcccccchHHHHHHHHhhCCcceEEEEecCC--------C---CcchhhHHhhCcC--ccccCCCCCCCccEEEEeC
Confidence            99865321        111111  1111111110        0   0001111111111  1112234567899999999


Q ss_pred             CCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHH-HHHHHhhcCceEEecCCCCHHHHHHHH
Q 014435          171 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKFDIEMALRAI  249 (424)
Q Consensus       171 SGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i  249 (424)
                      |||||.||+|.++|+++.............  ..+++++..+|++|.+++.. .++.++..|+++++.+.+++..+++.+
T Consensus       192 SGTTG~PKgv~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i  269 (527)
T TIGR02275       192 GGSTGTPKLIPRTHNDYYYSVRRSVEICWL--TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLI  269 (527)
T ss_pred             CCCCCCCceeeeehHHHHHHHHHHHhhcCC--CcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHH
Confidence            999999999999999998877665554444  33489999999999999864 377889999999998888999999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|++.++|.++..+.+.......+++++|.+++||+++++++.+++.+.+ +.++++.||+||++..... .....
T Consensus       270 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~-~~~~~  347 (527)
T TIGR02275       270 ERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTR-LDDPA  347 (527)
T ss_pred             HHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccC-CCCcc
Confidence            999999999999999999887766666788999999999999999999999988 6999999999996533222 22212


Q ss_pred             ccCCCcccccc-CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce--
Q 014435          330 VRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       330 ~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~--  393 (424)
                      ....+++|+|+ ++.+++|+| +++++++.|+.|||+++|+.++.||             ++||+|||+|+++++|.+  
T Consensus       348 ~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~  426 (527)
T TIGR02275       348 EIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV  426 (527)
T ss_pred             ccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence            33456889999 478999999 6889999999999999999999999             579999999999999976  


Q ss_pred             -----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           | ++.+|++|+|.+||++|.+||+|++|+|+|
T Consensus       427 ~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~  463 (527)
T TIGR02275       427 VGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVS  463 (527)
T ss_pred             EecccceeecCCEEECHHHHHHHHHhCCCceEEEEEe
Confidence                 3 889999999999999999999999999985

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-54  Score=433.83  Aligned_cols=392  Identities=20%  Similarity=0.234  Sum_probs=306.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus       113 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~  192 (655)
T PRK03584        113 RELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIA  192 (655)
T ss_pred             EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccch---------HHHh----cCC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEe
Q 014435          103 VPELW---------DKVK----DLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  168 (424)
Q Consensus       103 ~~~~~---------~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  168 (424)
                      ++...         ..+.    ... ...+++......  ............+++++..... ..........+++++|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il  269 (655)
T PRK03584        193 VDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGP--AAAAAALPGALLWEDFLAPAEA-AELEFEPVPFDHPLWIL  269 (655)
T ss_pred             ccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCC--cccccccCCcccHHHHhhcccc-CCCCceecCCCCcEEEE
Confidence            87532         1111    111 112222211100  0000111223445555442111 12223345679999999


Q ss_pred             cCCCCCCCcchhhhcHHHHHHH-HHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CCHH
Q 014435          169 YSSGTTGVSKGVILTHKNFIAA-SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIE  243 (424)
Q Consensus       169 ~TSGtTG~pK~v~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~  243 (424)
                      |||||||.||+|+++|++++.. ..........  ..++++++..++.|....  .++.+|..|+++++.+.    .++.
T Consensus       270 yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~  345 (655)
T PRK03584        270 YSSGTTGLPKCIVHGHGGILLEHLKELGLHCDL--GPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPN  345 (655)
T ss_pred             ecCCCCCCCceEEECccHHHHHHHHHHHHhcCC--CCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHH
Confidence            9999999999999999987543 3333333333  334899999998887543  45688999999998752    5899


Q ss_pred             HHHHHHHHccceEEEechHHHHHHHhccc--cccCCCCCeeEEEecCCCCCHHHHHHHHHhCC-CCeEEecccCccCCCc
Q 014435          244 MALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQGYGMTETCAP  320 (424)
Q Consensus       244 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~  320 (424)
                      .+++.++++++|++.++|+++..+.+...  ....++++||.+++||+++++++.+++.+.++ +..+++.||+||+++.
T Consensus       346 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~  425 (655)
T PRK03584        346 VLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSC  425 (655)
T ss_pred             HHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcc
Confidence            99999999999999999999998876532  23356889999999999999999999999883 5889999999997654


Q ss_pred             eeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecC--Ccchhh-----------------hhcccc
Q 014435          321 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--NVTPVF-----------------ELTVNC  381 (424)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy-----------------~~~~~T  381 (424)
                      .....+. .....+++|.|.+|++++|+| ++++++ .|+.|||+++|+  .++.||                 ++||+|
T Consensus       426 ~~~~~~~-~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~T  502 (655)
T PRK03584        426 FVGGNPL-LPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRH  502 (655)
T ss_pred             cccCCCC-CCcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeec
Confidence            4332221 134568899999999999999 678888 799999999996  566676                 256899


Q ss_pred             CceEEEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          382 NLFSYFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       382 gD~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ||+|++++||.+      |  |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       503 GDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg  553 (655)
T PRK03584        503 GDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIG  553 (655)
T ss_pred             CCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEe
Confidence            999999999987      3  999999999999999999999999999986

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-54  Score=418.54  Aligned_cols=373  Identities=22%  Similarity=0.359  Sum_probs=309.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++++++++++
T Consensus        20 ~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii   99 (488)
T PRK09088         20 GRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLL   99 (488)
T ss_pred             CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhh
Q 014435          102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI  181 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~  181 (424)
                      ++++......                         ....++++................++++++++|||||||.||+|.
T Consensus       100 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~  154 (488)
T PRK09088        100 GDDAVAAGRT-------------------------DVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVM  154 (488)
T ss_pred             Ecchhhcccc-------------------------cccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEE
Confidence            9865432100                         001111111111110111122335688999999999999999999


Q ss_pred             hcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHH--ccceEEEe
Q 014435          182 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK--YRVTVWWV  259 (424)
Q Consensus       182 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~--~~~t~~~~  259 (424)
                      ++|+++...+.........  ..++++++.+|++|.+|+...+..++..|+++++.+.+++...+..+.+  +++|++++
T Consensus       155 ~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  232 (488)
T PRK09088        155 LSERNLQQTAHNFGVLGRV--DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFC  232 (488)
T ss_pred             EehHHHHHHHHHHHHhhCC--CCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEee
Confidence            9999998776655444333  3448999999999999998778889999999999888899999988864  78999999


Q ss_pred             chHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCC-CCCccCCCcccc
Q 014435          260 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP-LVGVRRSGSAGT  338 (424)
Q Consensus       260 ~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~  338 (424)
                      +|.++..+.+........++++|.+++||++++....+.+.+.  ++++++.||+||++++...... .....+.+++|.
T Consensus       233 ~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~  310 (488)
T PRK09088        233 VPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGI  310 (488)
T ss_pred             HHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCcccc
Confidence            9999999987765455567899999999999999988888765  6899999999999865432211 111235678999


Q ss_pred             ccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e-eEe
Q 014435          339 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D-FFC  397 (424)
Q Consensus       339 ~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d-i~~  397 (424)
                      |.++++++|+| ++++.++.|+.|||+++|++++.||             ++||+|||+|+++++|.+       | ++.
T Consensus       311 ~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~  389 (488)
T PRK09088        311 PTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS  389 (488)
T ss_pred             CCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe
Confidence            99999999999 6789999999999999999999999             468999999999999976       3 889


Q ss_pred             eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          398 KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       398 ~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++|+|.+||++|.++|.|.+++|+|
T Consensus       390 ~G~~i~~~~iE~~l~~~~~v~~~~v~~  416 (488)
T PRK09088        390 GGENVYPAEIEAVLADHPGIRECAVVG  416 (488)
T ss_pred             CCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            999999999999999999999999985

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=4.3e-54  Score=423.33  Aligned_cols=387  Identities=24%  Similarity=0.323  Sum_probs=317.0

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++++
T Consensus        48 ~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~  127 (547)
T PRK06087         48 ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA  127 (547)
T ss_pred             CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc-----hHHHhc----CC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435          103 VPEL-----WDKVKD----LN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus       103 ~~~~-----~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +...     ...+..    +. ...++......        .......+.+++.....  .........+++++++||||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSG  197 (547)
T PRK06087        128 PTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA--------PATSSLSLSQIIADYEP--LTTAITTHGDELAAVLFTSG  197 (547)
T ss_pred             ecccccccHHHHHHHHHhhCCCCcEEEEeCCcC--------CCcCccCHHHHhccCCc--ccCCCCCCCCCeEEEEeCCC
Confidence            7632     111111    11 11122211110        01112234444332221  11222345789999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHc
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY  252 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  252 (424)
                      |||.||+|.++|+++.............  ..++++++.+|++|.+|+...++.++..|+++++.+.+++..+++.++++
T Consensus       198 TTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~  275 (547)
T PRK06087        198 TEGLPKGVMLTHNNILASERAYCARLNL--TWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQ  275 (547)
T ss_pred             CCCCCcEEEEecHHHHHHHHHHHHhcCC--CCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHc
Confidence            9999999999999998776655444443  34499999999999999877788999999999999999999999999999


Q ss_pred             cceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccC
Q 014435          253 RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR  332 (424)
Q Consensus       253 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~  332 (424)
                      ++|+++++|+.+..+++.......+++++|.+++||+++++++.+.+.+.  ++++++.||+||++++............
T Consensus       276 ~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~  353 (547)
T PRK06087        276 RCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRF  353 (547)
T ss_pred             CCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcchhhc
Confidence            99999998888777777655555678899999999999999999988775  7999999999998876654332221234


Q ss_pred             CCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce------
Q 014435          333 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN------  393 (424)
Q Consensus       333 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~------  393 (424)
                      .++.|.|++++.++++| +++.+++.|+.|||+++|+.++.||             ++||+|||+++++++|.+      
T Consensus       354 ~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~  432 (547)
T PRK06087        354 MHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRK  432 (547)
T ss_pred             CCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecc
Confidence            56789999999999999 7889999999999999999999999             579999999999999977      


Q ss_pred             -e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       | ++.+|++|+|.+||++|.++|+|.+++|+|
T Consensus       433 ~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~  465 (547)
T PRK06087        433 KDIIVRGGENISSREVEDILLQHPKIHDACVVA  465 (547)
T ss_pred             hhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence             3 889999999999999999999999999985

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-54  Score=417.33  Aligned_cols=385  Identities=25%  Similarity=0.330  Sum_probs=318.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+++||.||.+++.++|.+|.+.|++++++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++
T Consensus        24 ~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~  103 (497)
T PRK06145         24 RDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLL  103 (497)
T ss_pred             CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          101 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++++........ ...+......          ..   .+..+.....  .........++++++++|||||||.||+|
T Consensus       104 i~~~~~~~~~~~~-~~~~~~~~~~----------~~---~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v  167 (497)
T PRK06145        104 LVDEEFDAIVALE-TPKIVIDAAA----------QA---DSRRLAQGGL--EIPPQAAVAPTDLVRLMYTSGTTDRPKGV  167 (497)
T ss_pred             EEccchhhhhhcc-cceEEecCcc----------cc---hhHHHhccCC--CCCCCCCCCccceEEEEeCCCCCCCCcEE
Confidence            9987765433211 1111111000          00   0011110000  11112234678999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEec
Q 014435          181 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV  260 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  260 (424)
                      +++|+++.............  ..+++++...|++|.+++....+.++..|+++++.+.+++..+++.++++++|.+.++
T Consensus       168 ~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  245 (497)
T PRK06145        168 MHSYGNLHWKSIDHVIALGL--TASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMA  245 (497)
T ss_pred             EEecHHHHHHHHHHHHhhCC--CCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEeh
Confidence            99999987654443333333  3448999999999999987666788999999999988999999999999999999999


Q ss_pred             hHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcccccc
Q 014435          261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV  340 (424)
Q Consensus       261 p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~  340 (424)
                      |+++..++........+++++|.+++||+++++++++++.+.|++.++++.||+||+++..+...........+++|+|+
T Consensus       246 P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~  325 (497)
T PRK06145        246 PVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRAL  325 (497)
T ss_pred             HHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCC
Confidence            99999998876655566789999999999999999999999998899999999999987655433322233567899999


Q ss_pred             CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------e-eEeeee
Q 014435          341 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FFCKLF  400 (424)
Q Consensus       341 ~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~~~G~  400 (424)
                      ++++++++| ++++.++.|+.|||+++|+.++.||            ++||+|||+|+++++|.+       | ++.+|+
T Consensus       326 ~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~  404 (497)
T PRK06145        326 AHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGE  404 (497)
T ss_pred             CCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceEEeCCe
Confidence            999999999 5789999999999999999999999            469999999999999877       3 899999


Q ss_pred             eeChhhHHHHHhcCCCcccceecC
Q 014435          401 QVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       401 ~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|+|.+||+.|.++|+|.+++|++
T Consensus       405 ~v~~~~IE~~l~~~~~v~~~~v~~  428 (497)
T PRK06145        405 NIASSEVERVIYELPEVAEAAVIG  428 (497)
T ss_pred             EECHHHHHHHHHhCCCeeEEEEEe
Confidence            999999999999999999999975

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.3e-53  Score=418.42  Aligned_cols=385  Identities=25%  Similarity=0.343  Sum_probs=315.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++..++++++++++
T Consensus        43 ~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l  122 (542)
T PRK06155         43 GGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLL  122 (542)
T ss_pred             CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          101 ITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       101 i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      +++.+....+.....     ..++....... .    .....+ ...++... .  .........++++++++|||||||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~-~--~~~~~~~~~~~~~a~il~TSGTTG  193 (542)
T PRK06155        123 VVEAALLAALEAADPGDLPLPAVWLLDAPAS-V----SVPAGW-STAPLPPL-D--APAPAAAVQPGDTAAILYTSGTTG  193 (542)
T ss_pred             EEChhhHHHHHHhcccccCcceEEEecCccc-c----cccccc-chhhhccc-C--CCCCCCCCCCCCeEEEEECCCCCC
Confidence            999887766554432     11222111100 0    000000 00001000 0  111123346789999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccce
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  255 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  255 (424)
                      .||+|.++|+++.............  ..++++++.+|++|..++. .++.++..|+++++.+.+++..+++.|+++++|
T Consensus       194 ~PK~V~~t~~~~~~~~~~~~~~~~~--~~~~~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t  270 (542)
T PRK06155        194 PSKGVCCPHAQFYWWGRNSAEDLEI--GADDVLYTTLPLFHTNALN-AFFQALLAGATYVLEPRFSASGFWPAVRRHGAT  270 (542)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHhcCC--CCCCEEEEecCHHHHHHHH-HHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCc
Confidence            9999999999998765554444444  3448999999999999995 678999999999999989999999999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCc
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS  335 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  335 (424)
                      +++++|+++..|.+.........+++|.++.||  .++.+.+.+++.+ ++++++.||+||++.++.....   ....++
T Consensus       271 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~---~~~~~~  344 (542)
T PRK06155        271 VTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTHG---SQRPGS  344 (542)
T ss_pred             EEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCCC---CCCCCC
Confidence            999999999999887665555677899887666  5688999999988 6899999999999876654322   346678


Q ss_pred             cccccCCcEEEEeeCCCCccCCCCCceeEEEecC---Ccchhh------------hhccccCceEEEecCCce-------
Q 014435          336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP---NVTPVF------------ELTVNCNLFSYFRSNDHN-------  393 (424)
Q Consensus       336 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~---~~~~gy------------~~~~~TgD~g~~~~~g~~-------  393 (424)
                      +|.+.++++++|+| +++++++.|+.|||+++|+   .++.||            ++||+|||+|+++++|.+       
T Consensus       345 vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR~~  423 (542)
T PRK06155        345 MGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIK  423 (542)
T ss_pred             cCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEecCC
Confidence            99999999999999 6799999999999999998   588898            479999999999999876       


Q ss_pred             e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      | ++++|++|+|.+||++|.+||+|.+|+|+|
T Consensus       424 d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~  455 (542)
T PRK06155        424 DAIRRRGENISSFEVEQVLLSHPAVAAAAVFP  455 (542)
T ss_pred             CEEEeCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            3 889999999999999999999999999974

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=6.4e-54  Score=418.44  Aligned_cols=383  Identities=27%  Similarity=0.385  Sum_probs=318.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.+++++++
T Consensus        26 ~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii  105 (504)
T PRK07514         26 GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVV  105 (504)
T ss_pred             CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCC---eEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcc
Q 014435          102 TVPELWDKVKDLNLP---AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK  178 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  178 (424)
                      +++.....+......   ..+...+..           ....+.+......  .........++++++++|||||||.||
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~PK  172 (504)
T PRK07514        106 CDPANFAWLSKIAAAAGAPHVETLDAD-----------GTGSLLEAAAAAP--DDFETVPRGADDLAAILYTSGTTGRSK  172 (504)
T ss_pred             EccchhHHHHHhhhccCCceEEEecCC-----------CcccHHHhhhhcC--cccCcccCCCCCeEEEEECCCCCCCCc
Confidence            998776655443211   001111100           0001111111111  122233456789999999999999999


Q ss_pred             hhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEE
Q 014435          179 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW  258 (424)
Q Consensus       179 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~  258 (424)
                      +|.++|+++.............  ..++++++.+|++|..|+....+.++..|+++++.+..++..+++.+.  ++|.+.
T Consensus       173 ~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~  248 (504)
T PRK07514        173 GAMLSHGNLLSNALTLVDYWRF--TPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMM  248 (504)
T ss_pred             EEEEecHHHHHHHHHHHHHhCC--CCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--hheeee
Confidence            9999999999886655544444  334899999999999998777889999999999998899999999994  799999


Q ss_pred             echHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcccc
Q 014435          259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGT  338 (424)
Q Consensus       259 ~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~  338 (424)
                      ++|.++..++.........++++|.+++||+++++++.+.|.+.+ +.++++.||+||++.......  ......+++|.
T Consensus       249 ~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~--~~~~~~~~~G~  325 (504)
T PRK07514        249 GVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSNPY--DGERRAGTVGF  325 (504)
T ss_pred             cHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccCCc--cccccCccccc
Confidence            999999999887665666788999999999999999999999988 689999999999875443322  12345678999


Q ss_pred             ccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e-eEe
Q 014435          339 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D-FFC  397 (424)
Q Consensus       339 ~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d-i~~  397 (424)
                      |+++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+++++++|.+       | ++.
T Consensus       326 ~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~  405 (504)
T PRK07514        326 PLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIIS  405 (504)
T ss_pred             CCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEe
Confidence            9999999999988999999999999999999999999             468999999999999876       3 899


Q ss_pred             eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          398 KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       398 ~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++|+|.+||+++.++|+|.+++|+|
T Consensus       406 ~G~~i~~~~IE~~l~~~~~v~~~~v~~  432 (504)
T PRK07514        406 GGYNVYPKEVEGEIDELPGVVESAVIG  432 (504)
T ss_pred             CCeEECHHHHHHHHHhCCCeeEEEEEe
Confidence            999999999999999999999999874

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=4.9e-54  Score=428.64  Aligned_cols=393  Identities=18%  Similarity=0.205  Sum_probs=300.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.+++.++|+.|+++|+++||+|++++||++++++++|||+++|++++|+++.++.+++..++++++++++|+
T Consensus       113 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~  192 (652)
T TIGR01217       113 APVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFT  192 (652)
T ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccch---------HHHhc----CC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEe
Q 014435          103 VPELW---------DKVKD----LN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  168 (424)
Q Consensus       103 ~~~~~---------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  168 (424)
                      ++...         ..+..    +. .+.+++......... ..........++++...... ..........+++++|+
T Consensus       193 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~il  270 (652)
T TIGR01217       193 VDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRET-EAPKIDGALDLEDFTAAAQA-AELVFEQLPFDHPLWIL  270 (652)
T ss_pred             ccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccc-ccccccCcccHHHHHhcccC-CCCCceecCCCCCEEEE
Confidence            87542         22211    11 112222111000000 00001122345555433211 11122334568999999


Q ss_pred             cCCCCCCCcchhhhcHHHHHHH-HHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CCHH
Q 014435          169 YSSGTTGVSKGVILTHKNFIAA-SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIE  243 (424)
Q Consensus       169 ~TSGtTG~pK~v~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~  243 (424)
                      |||||||.||+|+++|++++.. ..........  ..++++++..|+.|..+.  .++.+|..|+++++.+.    .++.
T Consensus       271 yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~  346 (652)
T TIGR01217       271 FSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDL--GPGDRLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATN  346 (652)
T ss_pred             EcCCCCCCCCeEEecccHHHHHHHHHHHhccCC--CCCcEEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCch
Confidence            9999999999999999986543 2222222333  334899999999997543  35588999999998752    3788


Q ss_pred             HHHHHHHHccceEEEechHHHHHHHhccc--cccCCCCCeeEEEecCCCCCHHHHHHHHHhCC-CCeEEecccCccCCCc
Q 014435          244 MALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQGYGMTETCAP  320 (424)
Q Consensus       244 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~  320 (424)
                      .+++.++++++|++..+|.+++.+.+...  ....++++||.+++||+++++++.+++.+.++ +..+.+.||+||+++.
T Consensus       347 ~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~  426 (652)
T TIGR01217       347 VLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSC  426 (652)
T ss_pred             HHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhcc
Confidence            99999999999999888887777655321  23457899999999999999999999998874 3567789999997543


Q ss_pred             eeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecC--Ccchhh-----------------hhcccc
Q 014435          321 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--NVTPVF-----------------ELTVNC  381 (424)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy-----------------~~~~~T  381 (424)
                      .....+. .....+++|.|.+|++++|+| ++|+++ .|+.|||+++|+  .++.||                 ++||+|
T Consensus       427 ~~~~~~~-~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~t  503 (652)
T TIGR01217       427 FAGANPT-LPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRH  503 (652)
T ss_pred             ccCCCCC-CCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEc
Confidence            3322221 134567889999999999999 688888 599999999997  466666                 256899


Q ss_pred             CceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          382 NLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       382 gD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ||+|++++||.+       | |+++|++|+|.|||++|.+||+|.||+|+|
T Consensus       504 GDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg  554 (652)
T TIGR01217       504 GDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIG  554 (652)
T ss_pred             CCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEe
Confidence            999999999988       3 999999999999999999999999999986

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.3e-53  Score=421.18  Aligned_cols=392  Identities=25%  Similarity=0.364  Sum_probs=320.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|++|..+.+++..+++.+++++++
T Consensus        41 ~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii  120 (559)
T PRK08315         41 GLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALI  120 (559)
T ss_pred             CeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEE
Confidence            44699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchH-----HHhcCCCC------------------eEEEecCCCccccccccCCCcccchhhhhhccCCC----CCC
Q 014435          102 TVPELWD-----KVKDLNLP------------------AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV----TDI  154 (424)
Q Consensus       102 ~~~~~~~-----~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  154 (424)
                      ++++...     .+......                  .++....         ........++++.......    ...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (559)
T PRK08315        121 AADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD---------EKHPGMLNFDELLALGRAVDDAELAA  191 (559)
T ss_pred             EeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc---------cCCcccccHHHHHhhccccccccccc
Confidence            9875421     11111000                  0110000         0111223334333221100    011


Q ss_pred             CCCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceE
Q 014435          155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  234 (424)
Q Consensus       155 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~  234 (424)
                      ......++++++++|||||||.||+|.++|+++...+........+..  .++++...|++|.+|+...++.++..|+++
T Consensus       192 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~  269 (559)
T PRK08315        192 RQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE--EDRLCIPVPLYHCFGMVLGNLACVTHGATM  269 (559)
T ss_pred             hhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC--CceEEEecCcHHHHHHHHHHHHHHhccceE
Confidence            122345788999999999999999999999999887776655555433  489999999999999987889999999999


Q ss_pred             Ee-cCCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEeccc
Q 014435          235 VS-MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  313 (424)
Q Consensus       235 ~~-~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG  313 (424)
                      ++ ...+++..+++.++++++|+++++|+++..++.........++++|.+++||++++.++.+.+.+.++..++++.||
T Consensus       270 ~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG  349 (559)
T PRK08315        270 VYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYG  349 (559)
T ss_pred             EEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEc
Confidence            84 45689999999999999999999999999988876656667899999999999999999999999986667999999


Q ss_pred             CccCCCceeecCCCC-CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhcc
Q 014435          314 MTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTV  379 (424)
Q Consensus       314 ~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~  379 (424)
                      +||++.+++...... ...+..++|+|+++++++|+|+++++.++.|+.|||+++|+.++.||             ++||
T Consensus       350 ~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~  429 (559)
T PRK08315        350 MTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWM  429 (559)
T ss_pred             ccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCE
Confidence            999887665433221 13456789999999999999976699999999999999999999998             5589


Q ss_pred             ccCceEEEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          380 NCNLFSYFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       380 ~TgD~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|||+|+++++|.+      |  ++.+|++|+|.+||++|.++|+|.+++|++
T Consensus       430 ~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~  482 (559)
T PRK08315        430 HTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVG  482 (559)
T ss_pred             EccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEe
Confidence            99999999999876      3  889999999999999999999999999874

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-53  Score=418.50  Aligned_cols=392  Identities=31%  Similarity=0.448  Sum_probs=327.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||+||+++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++..+++.++++++
T Consensus        28 ~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i  107 (521)
T PRK06187         28 DGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVV  107 (521)
T ss_pred             CCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEE
Confidence            34459999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          101 ITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       101 i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      +++.+....+..+..     ..++........     ........+.+++....  .........++++++++|||||||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG  180 (521)
T PRK06187        108 LVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-----PLAPEVGEYEELLAAAS--DTFDFPDIDENDAAAMLYTSGTTG  180 (521)
T ss_pred             EEcchHHHHHHHHhhccCCccEEEEecCcccc-----ccccccccHHHHhhcCC--ccCCCCCCCccceEEEEECCCCCC
Confidence            999887766555422     122222221100     11123344555554333  222233456788999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccce
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  255 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  255 (424)
                      .||+|.++|+++.............  ..+++++..+|++|.+++. ..+.++..|+++++++.+++..+++.++++++|
T Consensus       181 ~PK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t  257 (521)
T PRK06187        181 HPKGVVLSHRNLFLHSLAVCAWLKL--SRDDVYLVIVPMFHVHAWG-LPYLALMAGAKQVIPRRFDPENLLDLIETERVT  257 (521)
T ss_pred             CCceEEeehHHHHHHHHHHHHhhCC--CCCCEEEEeCCchHHhhHH-HHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCe
Confidence            9999999999988877766554444  3448999999999999986 444499999999999888999999999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC----cc
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG----VR  331 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~  331 (424)
                      +++++|+++..|.+.......+++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++++........    ..
T Consensus       258 ~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        258 FFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             EEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccc
Confidence            999999999999988776667789999999999999999999999998 7999999999999876665443321    12


Q ss_pred             CCCccccccCCcEEEEeeCCCCccCCC--CCceeEEEecCCcchhh------------hhccccCceEEEecCCce----
Q 014435          332 RSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN----  393 (424)
Q Consensus       332 ~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~----  393 (424)
                      ..+++|+|.++++++|+| +++.+++.  |+.|||+++|+.+..+|            ++||+|||+++++++|.+    
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G  415 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD  415 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence            567899999999999999 57888888  99999999999999999            458999999999999876    


Q ss_pred             ---e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ---D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ---d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                         | ++.+|.+++|.+||+.|.++|+|.+++|++
T Consensus       416 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~  450 (521)
T PRK06187        416 RIKDVIISGGENIYPRELEDALYGHPAVAEVAVIG  450 (521)
T ss_pred             cccceEEcCCeEECHHHHHHHHHhCCCceEEEEEe
Confidence               3 889999999999999999999999999874

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-53  Score=414.05  Aligned_cols=379  Identities=28%  Similarity=0.367  Sum_probs=314.3

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. ..+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++..++
T Consensus        16 p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~   95 (483)
T PRK03640         16 PDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQL   95 (483)
T ss_pred             CCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHH
Confidence            3333433 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +.++++.++++++..........                       ..++++...... .........++++++++||||
T Consensus        96 ~~~~~~~vi~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSG  151 (483)
T PRK03640         96 DDAEVKCLITDDDFEAKLIPGIS-----------------------VKFAELMNGPKE-EAEIQEEFDLDEVATIMYTSG  151 (483)
T ss_pred             HhCCCCEEEEcchhhHHHhhhcc-----------------------ccHHHHhhcccc-cCCCCCCCCCCCeEEEEeCCC
Confidence            99999999998765544332110                       012222211111 111222345789999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHc
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY  252 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  252 (424)
                      |||.||+|.++|.++...+.........  ..++++++.+|++|.+++. .++.++..|+++++.+..++..+++.++++
T Consensus       152 tTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  228 (483)
T PRK03640        152 TTGKPKGVIQTYGNHWWSAVGSALNLGL--TEDDCWLAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKLLQTG  228 (483)
T ss_pred             cCCCCcEEEEecHHHHHHHHHHHHhcCC--CcCcEEEEecCHHHHHHHH-HHHHHHhcCCEEEecCCCCHHHHHHHHHHh
Confidence            9999999999999988766555444333  3459999999999999985 678889999999999999999999999999


Q ss_pred             cceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccC
Q 014435          253 RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR  332 (424)
Q Consensus       253 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~  332 (424)
                      ++|++.++|+++..|.+..... ....++|.+++||+++++.+.+.+++.  ++++++.||+||++..++...+......
T Consensus       229 ~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~  305 (483)
T PRK03640        229 GVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTK  305 (483)
T ss_pred             CCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCccccccc
Confidence            9999999999999998664332 234689999999999999999998875  7999999999998765444343333456


Q ss_pred             CCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------
Q 014435          333 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------  393 (424)
Q Consensus       333 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------  393 (424)
                      .+++|+|+++++++|.++  +++++.|+.|||+++|+.++.||            ++||+|||+++++++|.+       
T Consensus       306 ~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~  383 (483)
T PRK03640        306 LGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRS  383 (483)
T ss_pred             CCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeeccc
Confidence            689999999999999983  47899999999999999999999            568999999999999976       


Q ss_pred             e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      | ++.+|++|+|.+||+.+.++|.|.+++|++
T Consensus       384 ~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~  415 (483)
T PRK03640        384 DLIISGGENIYPAEIEEVLLSHPGVAEAGVVG  415 (483)
T ss_pred             CeEEeCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            3 899999999999999999999999999874

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-53  Score=418.06  Aligned_cols=389  Identities=21%  Similarity=0.310  Sum_probs=307.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++|+
T Consensus        42 ~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  121 (534)
T PRK05852         42 IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI  121 (534)
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCC---CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcch
Q 014435          103 VPELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG  179 (424)
Q Consensus       103 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  179 (424)
                      +............   ...+.......       ......... ..................++.++++|||||||.||+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKg  193 (534)
T PRK05852        122 DADGPHDRAEPTTRWWPLTVNVGGDSG-------PSGGTLSVH-LDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKM  193 (534)
T ss_pred             cCCCcchhccccccccceeeeeccccc-------ccccccccc-cccccCCCccccccCCCCCCceEEEeCCCCCCCCcE
Confidence            8653322111100   00111100000       000000000 000000000111112235778999999999999999


Q ss_pred             hhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHHHccceEE
Q 014435          180 VILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVW  257 (424)
Q Consensus       180 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~  257 (424)
                      |.++|+++...+.........  ..++++++..|++|.+++...++.++..|++++++.  .+++..+++.++++++|++
T Consensus       194 v~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~  271 (534)
T PRK05852        194 VPWTHANIASSVRAIITGYRL--SPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWY  271 (534)
T ss_pred             EEecHHHHHHHHHHHHHHhCC--CCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEE
Confidence            999999998887776655544  344899999999999999878899999999998864  4789999999999999999


Q ss_pred             EechHHHHHHHhccccc--cCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC------C
Q 014435          258 WVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV------G  329 (424)
Q Consensus       258 ~~~p~~~~~l~~~~~~~--~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~------~  329 (424)
                      +++|.++..|.+.....  ..+.+++|.+.++|+++++++++.+.+.+ +.++++.||+||++..++......      .
T Consensus       272 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  350 (534)
T PRK05852        272 TAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENP  350 (534)
T ss_pred             EcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCc
Confidence            99999999998765432  23468999999999999999999999988 689999999999987655432210      0


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce----
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN----  393 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~----  393 (424)
                      ....+..|. .++++++|+| +++++++.|+.|||+++|+.++.||            ++||+|||+|++++||.+    
T Consensus       351 ~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~g  428 (534)
T PRK05852        351 VVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRG  428 (534)
T ss_pred             ccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcEEEEe
Confidence            112233444 6899999999 6789999999999999999999999            469999999999999987    


Q ss_pred             ---e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ---D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ---d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                         | ++.+|.+|+|.+||++|.++|+|.+|+|+|
T Consensus       429 R~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g  463 (534)
T PRK05852        429 RIKELINRGGEKISPERVEGVLASHPNVMEAAVFG  463 (534)
T ss_pred             cchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence               3 889999999999999999999999999986

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-53  Score=419.23  Aligned_cols=392  Identities=23%  Similarity=0.343  Sum_probs=318.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++++++.++.+++..+++++++++++
T Consensus        43 ~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii  122 (558)
T PRK12583         43 ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVI  122 (558)
T ss_pred             CcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecccch-----HHHhcCCCC-----------------eEEEecCCCccccccccCCCcccchhhhhhccCCC----CCCC
Q 014435          102 TVPELW-----DKVKDLNLP-----------------AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV----TDIP  155 (424)
Q Consensus       102 ~~~~~~-----~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  155 (424)
                      +++...     ..+......                 ...+....        ........+++........    ....
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (558)
T PRK12583        123 CADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP--------APPPGFLAWHELQARGETVSREALAER  194 (558)
T ss_pred             EeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC--------CCCccccchHhhhhccccccccccccc
Confidence            986432     111111000                 00000000        0011222333332221110    0111


Q ss_pred             CCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEE
Q 014435          156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  235 (424)
Q Consensus       156 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~  235 (424)
                      .....++++++++|||||||.||+|.++|+++...+..........  .++++++..|++|.+|....++.++..|++++
T Consensus       195 ~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~  272 (558)
T PRK12583        195 QASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT--EHDRLCVPVPLYHCFGMVLANLGCMTVGACLV  272 (558)
T ss_pred             ccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC--CCCeEEEecCchhhhhHHHHHHHHHhcCceEE
Confidence            2234578899999999999999999999999988776655554443  34899999999999999888889999999998


Q ss_pred             ec-CCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccC
Q 014435          236 SM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  314 (424)
Q Consensus       236 ~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~  314 (424)
                      ++ ..+++..+++.++++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.+++..+++.||+
T Consensus       273 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~  352 (558)
T PRK12583        273 YPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGM  352 (558)
T ss_pred             eecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccc
Confidence            65 35789999999999999999999999988887665555678999999999999999999999999877789999999


Q ss_pred             ccCCCceeecCCC-CCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccc
Q 014435          315 TETCAPISLENPL-VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVN  380 (424)
Q Consensus       315 tE~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~  380 (424)
                      ||+++++...... ....+..++|+|.+++.++|+|+ ++++++.|+.|||+++|+.++.||             ++||+
T Consensus       353 tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~  431 (558)
T PRK12583        353 TETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDP-DGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMH  431 (558)
T ss_pred             cccccceeccCcccccccccCCCCccCCCCeEEEECC-CCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCee
Confidence            9998776654322 11345678999999999999996 489999999999999999999998             45899


Q ss_pred             cCceEEEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          381 CNLFSYFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       381 TgD~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |||+|+++++|.+      |  ++++|++|+|.+||++|.++|.|.+++|+|
T Consensus       432 TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~  483 (558)
T PRK12583        432 TGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFG  483 (558)
T ss_pred             ccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEe
Confidence            9999999999877      3  889999999999999999999999999975

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-54  Score=420.57  Aligned_cols=384  Identities=19%  Similarity=0.284  Sum_probs=300.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++
T Consensus        39 ~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii  118 (540)
T PRK05857         39 TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAAL  118 (540)
T ss_pred             CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      +++........+.     ...+.+... ..         ..  .........   .........++++++++|||||||.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~--~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~  183 (540)
T PRK05857        119 VAPGSKMASSAVPEALHSIPVIAVDIA-AV---------TR--ESEHSLDAA---SLAGNADQGSEDPLAMIFTSGTTGE  183 (540)
T ss_pred             EeccchhccccccccccccceeEeecc-cc---------cc--ccccccccc---ccccccCCCCCCeEEEEeCCCCCCC
Confidence            9986543221111     011111100 00         00  000000000   0111223467899999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhh--hhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccc
Q 014435          177 SKGVILTHKNFIAASLMISAH--QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV  254 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~  254 (424)
                      ||+|.++|+++.+........  .......+++.+..+|++|..++. ..+.++..|+++++. +.++..+++.++++++
T Consensus       184 PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G~~~v~~-~~~~~~~~~~i~~~~i  261 (540)
T PRK05857        184 PKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMHGGLCVTG-GENTTSLLEILTTNAV  261 (540)
T ss_pred             CCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhhcceeEEec-CCChhHHHHHHHhcCc
Confidence            999999999987764432211  001112347889999999999986 667788889888764 5688999999999999


Q ss_pred             eEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC---cc
Q 014435          255 TVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG---VR  331 (424)
Q Consensus       255 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---~~  331 (424)
                      |+++++|+++..+.+.......+++++|.+++||++++....+ +.+.+ ++++++.||+||++...........   ..
T Consensus       262 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  339 (540)
T PRK05857        262 ATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKI  339 (540)
T ss_pred             ceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCceeeeccccccccccc
Confidence            9999999999999887665566789999999999999887775 44566 6999999999998754433222111   22


Q ss_pred             CCCccccccCCcEEEEeeCCCCccC-----CCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-
Q 014435          332 RSGSAGTLVAGVEAQIVSVDTLKPL-----PPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-  393 (424)
Q Consensus       332 ~~~~~G~~~~~~~~~i~d~~~~~~~-----~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-  393 (424)
                      +.+++|+|++|++++|+|++...++     +.|+.|||+++|+.++.||            ++||+|||+|+++++|++ 
T Consensus       340 ~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~  419 (540)
T PRK05857        340 EAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFY  419 (540)
T ss_pred             ccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEE
Confidence            4578999999999999995333333     4578999999999999999            569999999999999977 


Q ss_pred             ------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            | ++.+|++|+|.|||.+|..||.|.+|+|+|
T Consensus       420 ~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~  457 (540)
T PRK05857        420 IKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYE  457 (540)
T ss_pred             EeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence                  3 999999999999999999999999999985

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.3e-54  Score=427.05  Aligned_cols=383  Identities=23%  Similarity=0.282  Sum_probs=294.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCH-----HHHHHHHHhcCC
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV-----SELSKQVKDSNP   97 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~i~~~l~~~~~   97 (424)
                      +.+||+||.++++++|++|++.|+++||+|+++++|+++|+++++||+++|++++|++|.++.     +++.++++.+++
T Consensus        79 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~  158 (624)
T PRK12582         79 RKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKP  158 (624)
T ss_pred             EEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCC
Confidence            579999999999999999999999999999999999999999999999999999999999875     899999999999


Q ss_pred             eEEEEcccc--hHHHhcC---CCCeEEEecCCCccccccccCCCcccchhhhhhccCCCC-CCCCCCCCCCCEEEEecCC
Q 014435           98 KLVITVPEL--WDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT-DIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        98 ~~ii~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TS  171 (424)
                      +++|+++..  ...+...   ....+.....         ........++++........ ........++++++++|||
T Consensus       159 ~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTS  229 (624)
T PRK12582        159 RVVFAQSGAPFARALAALDLLDVTVVHVTGP---------GEGIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTS  229 (624)
T ss_pred             cEEEecCHHHHHHHHHhhhhcCceEEEEcCC---------CcccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcC
Confidence            999998642  1111111   1112211110         00111233444433211100 0011234578999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccC-CCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CC---HHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FD---IEMAL  246 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~---~~~~~  246 (424)
                      ||||.||+|.++|+++................ ..++.+.++|++|.+|+...++.++..|+++++.+. ++   ...++
T Consensus       230 GTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~  309 (624)
T PRK12582        230 GSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETI  309 (624)
T ss_pred             CCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHH
Confidence            99999999999999998776554333222221 247899999999999987677888999999998753 33   34567


Q ss_pred             HHHHHccceEEEechHHHHHHHhcccc----ccCCCCCeeEEEecCCCCCHHHHHHHHHhC----C-CCeEEecccCccC
Q 014435          247 RAIEKYRVTVWWVVPPIILALAKNSLV----RKFDISSLKLVGSGAAPLGKELMEDCQKNI----P-GATIFQGYGMTET  317 (424)
Q Consensus       247 ~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~----~-~~~~~~~yG~tE~  317 (424)
                      +.++++++|+++++|.++..|.+....    ....+++||.+++||+++++++.+++++.+    + ++.+++.||+||+
T Consensus       310 ~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~  389 (624)
T PRK12582        310 RNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET  389 (624)
T ss_pred             HHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccc
Confidence            788899999999999999988764321    223468999999999999999999998863    2 3689999999998


Q ss_pred             CCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCce
Q 014435          318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLF  384 (424)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~  384 (424)
                      ++++......  ..+.+++|+|++|++++|++        .|+.|||+++|++++.||             ++||+|||+
T Consensus       390 ~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~--------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDl  459 (624)
T PRK12582        390 APTTTGTHWD--TERVGLIGLPLPGVELKLAP--------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDA  459 (624)
T ss_pred             cceeecccCC--CCCCCCCCcCCCCcEEEEcc--------CCCceEEEEECCcccccccCCccchhhhcCccCCccccce
Confidence            8765533322  35578999999999999964        478899999999999999             579999999


Q ss_pred             EEE-e---cCCce-------e-eE-eeeeeeChhhHH--HHHhcCCCcccceecC
Q 014435          385 SYF-R---SNDHN-------D-FF-CKLFQVAPAELE--GLLVSHPEILDAVVIP  424 (424)
Q Consensus       385 g~~-~---~~g~~-------d-i~-~~G~~v~~~~iE--~~l~~~p~V~~a~v~g  424 (424)
                      |++ +   ++|.+       | ++ .+|++|+|.+||  .++.+||.|.+|+|+|
T Consensus       460 g~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG  514 (624)
T PRK12582        460 ARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG  514 (624)
T ss_pred             EEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEc
Confidence            998 4   35666       3 66 479999998885  6789999999999987

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.6e-53  Score=414.33  Aligned_cols=390  Identities=23%  Similarity=0.335  Sum_probs=320.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.+++.++|++|++.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++..+++.+++++++
T Consensus        23 ~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i  102 (515)
T TIGR03098        23 DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLV  102 (515)
T ss_pred             CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++++....+.....     ..++.........    ........++++......   ........+++++++|||||||.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGTTG~  175 (515)
T TIGR03098       103 TSSERLDLLHPALPGCHDLRTLILVGEPAHAS----EGGGESPSWPKLLALGDA---DPPHPVIDSDMAAILYTSGSTGR  175 (515)
T ss_pred             EccchhhhhHhhhhcccccceEEEecCccccc----CCccccccHHHhhccccc---cccCCCCcCCeEEEEECCCCCCC
Confidence            98876554433221     1122111111000    011122344444432221   12233456889999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|.++...+.........  ..++++++.+|++|.+++. .++.++..|+++++.+.+++..+.+.++++++|+
T Consensus       176 PK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  252 (515)
T TIGR03098       176 PKGVVLSHRNLVAGAQSVATYLEN--RPDDRLLAVLPLSFDYGFN-QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITG  252 (515)
T ss_pred             CceEEEecHHHHHHHHHHHHHhCC--CcccEEEEECchhhHhHHH-HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCce
Confidence            999999999998877766554443  3448999999999999985 7889999999999998899999999999999999


Q ss_pred             EEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcc
Q 014435          257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA  336 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~  336 (424)
                      +.++|+++..|.+.... ...++++|.++++|+++++.+.+.+++.+++..+++.||+||++...... +.....+.+++
T Consensus       253 ~~~~P~~~~~l~~~~~~-~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~v  330 (515)
T TIGR03098       253 LAAVPPLWAQLAQLDWP-ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLP-PEEVDRRPDSI  330 (515)
T ss_pred             EecChHHHHHHHhcccC-CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecc-cccccCCCCCc
Confidence            99999999999875332 23578999999999999999999999999889999999999987654432 22224567899


Q ss_pred             ccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhh------------------------hccccCceEEEecCCc
Q 014435          337 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFE------------------------LTVNCNLFSYFRSNDH  392 (424)
Q Consensus       337 G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~------------------------~~~~TgD~g~~~~~g~  392 (424)
                      |+|+++++++|+| ++++.++.|+.|||+++|+.++.||-                        .||+|||+|+++++|.
T Consensus       331 G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       331 GKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            9999999999999 68899999999999999999999980                        1689999999999987


Q ss_pred             e-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          393 N-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       393 ~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +       | ++.+|++|+|.+||++|.+||.|.+|+|+|
T Consensus       410 l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~  449 (515)
T TIGR03098       410 LYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG  449 (515)
T ss_pred             EEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEe
Confidence            7       3 889999999999999999999999999985

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.1e-53  Score=431.38  Aligned_cols=379  Identities=21%  Similarity=0.277  Sum_probs=302.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++
T Consensus       229 ~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi  307 (718)
T PRK08043        229 FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIF  307 (718)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEE
Confidence            36799999999999999999987 59999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhc--CCC---C-eEEEecCCCccccccccCCCcccchhh--hhhccCCCCCCCCCCCCCCCEEEEecCCCC
Q 014435          102 TVPELWDKVKD--LNL---P-AVLLGSKDKVSSSGLISRSSKIVSFHD--LIELSGSVTDIPDVSVKQTDAAALLYSSGT  173 (424)
Q Consensus       102 ~~~~~~~~~~~--~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  173 (424)
                      ++.+.......  ...   . ..+.... .       .   ....+..  .................++|+++++|||||
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGT  376 (718)
T PRK08043        308 TSRQFLDKGKLWHLPEQLTQVRWVYLED-L-------K---DDVTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGS  376 (718)
T ss_pred             EcHHHHhhccCCChhhhhccccEEEhhh-h-------h---hhcchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCC
Confidence            98775442111  110   0 1111110 0       0   0000100  000000000111123457899999999999


Q ss_pred             CCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CCHHHHHHHHHHc
Q 014435          174 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKY  252 (424)
Q Consensus       174 TG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~  252 (424)
                      ||.||+|.++|+++...+.........  ..++++++.+|++|.+++...++.++..|+++++.+. +++..+.+.++++
T Consensus       377 TG~PKgv~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~  454 (718)
T PRK08043        377 EGHPKGVVHSHKSLLANVEQIKTIADF--TPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDR  454 (718)
T ss_pred             CCCCCEEEEcHHHHHHHHHHHHHhhCC--CccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhc
Confidence            999999999999998877665544433  3448999999999999997778899999999998764 5778888999999


Q ss_pred             cceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccC
Q 014435          253 RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR  332 (424)
Q Consensus       253 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~  332 (424)
                      ++|+++++|+++..+.+..  ...++++||.+++||+++++++.+.|++.+ ++++++.||+||+++.++...+.  ..+
T Consensus       455 ~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--~~~  529 (718)
T PRK08043        455 NCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVPM--AAK  529 (718)
T ss_pred             CCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCCc--ccC
Confidence            9999999999998876542  234678999999999999999999999988 69999999999998766654433  345


Q ss_pred             CCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----------------------hhccccCceEEEecC
Q 014435          333 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----------------------ELTVNCNLFSYFRSN  390 (424)
Q Consensus       333 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----------------------~~~~~TgD~g~~~~~  390 (424)
                      .+++|+|+|+++++|+|. ++    .++.|||+++|++++.||                      ++||+|||+|++++|
T Consensus       530 ~~svG~p~pg~~~~i~d~-~~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~d  604 (718)
T PRK08043        530 PGTVGRILPGMDARLLSV-PG----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQ  604 (718)
T ss_pred             CCCCCCcCCCCeeEEecC-CC----CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCC
Confidence            789999999999999984 43    256699999999999888                      158999999999999


Q ss_pred             Cce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          391 DHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       391 g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |++       | ++++|++|+|.|||+++.+|+.+.+++|++
T Consensus       605 G~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~  646 (718)
T PRK08043        605 GFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAI  646 (718)
T ss_pred             CcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEE
Confidence            987       3 999999999999999999999888887764

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-53  Score=415.80  Aligned_cols=375  Identities=19%  Similarity=0.262  Sum_probs=306.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.+++++++
T Consensus        58 ~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii  137 (516)
T PRK13383         58 DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVV  137 (516)
T ss_pred             CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhh
Q 014435          102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI  181 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~  181 (424)
                      ++++....+.........+...                . ....   .  .  ...+...++.++++|||||||.||+|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~---~--~--~~~p~~~~~~~~il~TSGTTG~PK~v~  193 (516)
T PRK13383        138 ADNEFAERIAGADDAVAVIDPA----------------T-AGAE---E--S--GGRPAVAAPGRIVLLTSGTTGKPKGVP  193 (516)
T ss_pred             EchhHHHHHHhhhcceEEeccc----------------h-hhhh---c--C--CCCCCCCCCCcEEEECCCCCCCCCeee
Confidence            9987766655433222111100                0 0000   0  0  001112355678999999999999999


Q ss_pred             hcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEech
Q 014435          182 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP  261 (424)
Q Consensus       182 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p  261 (424)
                      ++|....................+++++..+|++|.+|+. ..+.++..|+++++...+++..+++.++++++|.+.++|
T Consensus       194 ~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  272 (516)
T PRK13383        194 RAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVP  272 (516)
T ss_pred             ecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecH
Confidence            9987432211111111112223448999999999999995 667789999999998889999999999999999999999


Q ss_pred             HHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccc
Q 014435          262 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL  339 (424)
Q Consensus       262 ~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~  339 (424)
                      .++..+.+....  ....++++|.+++||+++++++.++|.+.+ +..+++.||+||++..+..... ......+++|+|
T Consensus       273 ~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~  350 (516)
T PRK13383        273 VVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATPA-DLRDAPETVGKP  350 (516)
T ss_pred             HHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceecccc-ccccCCCcccCC
Confidence            999999875432  123578999999999999999999999998 5889999999999865544322 223456789999


Q ss_pred             cCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh---------hhccccCceEEEecCCce-------e-eEeeeeee
Q 014435          340 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQV  402 (424)
Q Consensus       340 ~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy---------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v  402 (424)
                      +++++++|+| +++++++.|+.|||+++|+.++.+|         ++||+|||+|+++++|++       | ++.+|++|
T Consensus       351 ~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v  429 (516)
T PRK13383        351 VAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENV  429 (516)
T ss_pred             CCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchhheecCceecceeEEEcCCccEEEeccccceEEECCEEE
Confidence            9999999999 6789999999999999999999999         589999999999999877       3 89999999


Q ss_pred             ChhhHHHHHhcCCCcccceecC
Q 014435          403 APAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       403 ~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|.+||.+|.+||.|.+++|++
T Consensus       430 ~~~eiE~~l~~~~~v~~~~vv~  451 (516)
T PRK13383        430 YPRAVENALAAHPAVADNAVIG  451 (516)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEe
Confidence            9999999999999999999875

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-53  Score=413.11  Aligned_cols=377  Identities=19%  Similarity=0.241  Sum_probs=307.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ++.+||.||.++++++|++|+++ |++++++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++
T Consensus        26 ~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  105 (529)
T PRK07867         26 DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLV  105 (529)
T ss_pred             CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEE
Confidence            45799999999999999999997 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          101 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++++....+.........+....              ..+.+.+..... .........++++++++|||||||.||+|
T Consensus       106 i~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PKgv  170 (529)
T PRK07867        106 LTESAHAELLDGLDPGVRVINVDS--------------PAWADELAAHRD-AEPPFRVADPDDLFMLIFTSGTSGDPKAV  170 (529)
T ss_pred             EECHhHHHHHHhhccCceEEEecc--------------ccHHHHhcccCC-CCCCcccCCccceEEEEECCCCCCCCcEE
Confidence            999887765554321111111110              112332321111 11122334678999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEec
Q 014435          181 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV  260 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  260 (424)
                      +++|+++..............  ..+++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++
T Consensus       171 ~~s~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~  248 (529)
T PRK07867        171 RCTHRKVASAGVMLAQRFGLG--PDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYV  248 (529)
T ss_pred             EecHHHHHHHHHHHHHhhCCC--cccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEecc
Confidence            999999987766655554443  348999999999999997777788999999999988999999999999999999999


Q ss_pred             hHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcccccc
Q 014435          261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV  340 (424)
Q Consensus       261 p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~  340 (424)
                      |+.+..++..........+++|. ++||+.+++.. .++.+.+ +.++++.||+||+++.+... +   ....+++|.|.
T Consensus       249 p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~-~---~~~~~~~g~~~  321 (529)
T PRK07867        249 GKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRT-P---DTPPGALGPLP  321 (529)
T ss_pred             HHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccC-C---CCCCCCcCCCC
Confidence            99999888765433323457784 56888887764 6777777 68999999999987654432 2   23456889999


Q ss_pred             CCcEEEEeeCCCCccCCCCC------------ceeEEE-ecCCcchhh------------hhccccCceEEEecCCce--
Q 014435          341 AGVEAQIVSVDTLKPLPPNQ------------LGEIWV-RGPNVTPVF------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       341 ~~~~~~i~d~~~~~~~~~g~------------~Gel~v-~~~~~~~gy------------~~~~~TgD~g~~~~~g~~--  393 (424)
                      ++  ++++|++++++++.|+            .|||++ +|+.++.||            ++||+|||+|+++++|.+  
T Consensus       322 ~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~  399 (529)
T PRK07867        322 PG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYF  399 (529)
T ss_pred             CC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEEE
Confidence            98  7788877888899888            999999 999999999            479999999999999987  


Q ss_pred             -----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           | ++++|++|+|.+||++|.+||+|.+|+|+|
T Consensus       400 ~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g  436 (529)
T PRK07867        400 AGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYA  436 (529)
T ss_pred             eccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEe
Confidence                 3 889999999999999999999999999985

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.5e-54  Score=421.02  Aligned_cols=376  Identities=15%  Similarity=0.195  Sum_probs=290.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCC-------CCCHHHHHHHHHh
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-------VYTVSELSKQVKD   94 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~-------~~~~~~i~~~l~~   94 (424)
                      ++++||+||.++++++|+.|.++  ++||+|+++++|++++++++|||+++|+++++++.       ....+++.++++.
T Consensus        29 ~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~  106 (525)
T PRK05851         29 WRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAG  106 (525)
T ss_pred             ceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHh
Confidence            57899999999999999999987  89999999999999999999999999998654431       1223455677899


Q ss_pred             cCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCC
Q 014435           95 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT  174 (424)
Q Consensus        95 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  174 (424)
                      ++++++|++++....+........+   .                .+...... .  ...+.....++++++++||||||
T Consensus       107 ~~~~~vi~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~-~--~~~~~~~~~~~d~a~i~~TSGTT  164 (525)
T PRK05851        107 IGVRTVLSHGSHLERLRAVDSSVTV---H----------------DLATAAHT-N--RSASLTPPDSGGPAVLQGTAGST  164 (525)
T ss_pred             cCCCEEEeCHHHHHHHHHhhccccc---c----------------cccccccc-c--ccccCCCCCCCCeEEEEeCCCCC
Confidence            9999999987765544432111000   0                00000000 0  00011123578999999999999


Q ss_pred             CCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC--C--CHHHHHHHHH
Q 014435          175 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--F--DIEMALRAIE  250 (424)
Q Consensus       175 G~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~  250 (424)
                      |.||+|.++|+++...+.......... ..++++++.+|++|.+|+. .++.++..|+++++.+.  +  ++..+++.++
T Consensus       165 G~PKgV~~th~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~  242 (525)
T PRK05851        165 GTPRTAILSPGAVLSNLRGLNARVGLD-AATDVGCSWLPLYHDMGLA-FLLTAALAGAPLWLAPTTAFSASPFRWLSWLS  242 (525)
T ss_pred             CCCcEEEecHHHHHHHHHHHHHHhCCC-CCCCeEEEcCCCccCccHH-HHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHH
Confidence            999999999999998877665554443 1458999999999999995 67889999999998763  3  6788999999


Q ss_pred             HccceEEEechHHHHHHHhccc-cccCCCCCeeEEEecCCCCCHHHHHHHHHh---C--CCCeEEecccCccCCCceeec
Q 014435          251 KYRVTVWWVVPPIILALAKNSL-VRKFDISSLKLVGSGAAPLGKELMEDCQKN---I--PGATIFQGYGMTETCAPISLE  324 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~~-~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~---~--~~~~~~~~yG~tE~~~~~~~~  324 (424)
                      ++++|++..+|.++..+.+... ....+++++|.+++||+++++++.++|.+.   +  ++..+++.||+||++..++..
T Consensus       243 ~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~  322 (525)
T PRK05851        243 DSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVP  322 (525)
T ss_pred             HhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEec
Confidence            9999988665555555443221 233457899999999999999999998874   2  124699999999987665543


Q ss_pred             CCCC-------------CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------hhccccCc
Q 014435          325 NPLV-------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------ELTVNCNL  383 (424)
Q Consensus       325 ~~~~-------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------~~~~~TgD  383 (424)
                      .+..             ...+.+++|+|++|++++|+|++.+.+++.|+.|||+++|+.++.||        ++||+|||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGD  402 (525)
T PRK05851        323 VPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGD  402 (525)
T ss_pred             CCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccCCCCceeccc
Confidence            2210             01234689999999999999965556789999999999999999999        57999999


Q ss_pred             eEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          384 FSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       384 ~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|+++ +|.+       | |+++|++|+|.|||++|.+||+|.+|+|++
T Consensus       403 l~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~  450 (525)
T PRK05851        403 LGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVA  450 (525)
T ss_pred             eEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEE
Confidence            99987 6766       3 999999999999999999999999999874

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.6e-53  Score=453.78  Aligned_cols=401  Identities=24%  Similarity=0.309  Sum_probs=322.9

Q ss_pred             cCCCCCCC--CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           14 SLRPPLVL--PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        14 ~~~~~~~~--~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      ++++++..  ++++||+||.++++++|+.|++ ++++||+|+++++|+++++++++||+++|++++|+++..+.+++.++
T Consensus       629 p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~  707 (1146)
T PRK08633        629 WSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSA  707 (1146)
T ss_pred             CCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHH
Confidence            44555432  4689999999999999999987 58999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCC------CCeEEEecCCCccccccccCCCcccchhhhhhccCCCC----CCCCCCCCC
Q 014435           92 VKDSNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT----DIPDVSVKQ  161 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  161 (424)
                      ++++++++++++++....+....      ....++..++..      ........+.+.........    ........+
T Consensus       708 l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  781 (1146)
T PRK08633        708 IEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK------AKISKVDKLTALLAARLLPARLLKRLYGPTFKP  781 (1146)
T ss_pred             HHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc------cccchhHHHHHHHHhccCCHHHHHhhccCCCCC
Confidence            99999999999987766654211      111111111100      00001111221111110000    000134567


Q ss_pred             CCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CC
Q 014435          162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KF  240 (424)
Q Consensus       162 ~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~  240 (424)
                      +|+++++|||||||.||+|.++|+++.............  ..++++++.+|++|.+|+...++.++..|+++++.+ .+
T Consensus       782 ~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~  859 (1146)
T PRK08633        782 DDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNL--RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPT  859 (1146)
T ss_pred             CCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCC--CCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCC
Confidence            999999999999999999999999999887766554444  344899999999999999776888999999998865 47


Q ss_pred             CHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCc
Q 014435          241 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP  320 (424)
Q Consensus       241 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  320 (424)
                      ++..+++.++++++|++.++|++++.+.++....+.+++++|.+++||+++++++.+++++.+ ++++++.||+||+++.
T Consensus       860 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~  938 (1146)
T PRK08633        860 DALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPV  938 (1146)
T ss_pred             CHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcce
Confidence            999999999999999999999999999887665666789999999999999999999999988 6999999999999877


Q ss_pred             eeecCCCC--------CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------h----
Q 014435          321 ISLENPLV--------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------E----  376 (424)
Q Consensus       321 ~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~----  376 (424)
                      ++...+..        ...+.+++|+|+|+++++|+|++++++++.|+.|||+++|+.++.||            +    
T Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~ 1018 (1146)
T PRK08633        939 ASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGI 1018 (1146)
T ss_pred             EEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCC
Confidence            66543321        12356789999999999999988899999999999999999999999            3    


Q ss_pred             hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCC--CcccceecC
Q 014435          377 LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHP--EILDAVVIP  424 (424)
Q Consensus       377 ~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p--~V~~a~v~g  424 (424)
                      +||+|||+|++++||.+       | ++++|++|+|.|||++|.+||  .+.+|+|++
T Consensus      1019 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~ 1076 (1146)
T PRK08633       1019 GWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTA 1076 (1146)
T ss_pred             CeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEe
Confidence            89999999999999987       3 899999999999999999999  456677764

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.6e-53  Score=414.70  Aligned_cols=394  Identities=21%  Similarity=0.274  Sum_probs=314.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.+++++++
T Consensus        37 ~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~  116 (539)
T PRK07008         37 IHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVL  116 (539)
T ss_pred             ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEE
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      +++++.+.+.....     ..++...+.....    .....+.+++++.....  .........++++++++|||||||.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~  190 (539)
T PRK07008        117 FDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP----AGSTPLLCYETLVGAQD--GDYDWPRFDENQASSLCYTSGTTGN  190 (539)
T ss_pred             EcchhHHHHHHHHhhCCCceEEEEEccCCccc----cCCcccccHHHHhcccC--CCcCcccCCcccceEEEECCCCCCC
Confidence            99877655443211     1112111111000    01122445555543322  1112224457889999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CCCHHHHHHHHHHccce
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVT  255 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t  255 (424)
                      ||+|+++|+++.................+++++...|++|.+++. ..+.++..|+++++++ .+++..+.+.++++++|
T Consensus       191 PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt  269 (539)
T PRK07008        191 PKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWG-LPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVT  269 (539)
T ss_pred             CcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHH-HHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCE
Confidence            999999999986543222111122233458999999999988774 5567788999999874 57899999999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC------
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG------  329 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~------  329 (424)
                      ++.++|+++..+++.......+++++|.++++|+++++++.+++.+.+ +..+++.||+||++..++.......      
T Consensus       270 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~  348 (539)
T PRK07008        270 FSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPL  348 (539)
T ss_pred             EEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCc
Confidence            999999999999987766666789999999999999999999999988 6999999999999865543321100      


Q ss_pred             ---ccCCCccccccCCcEEEEeeCCCCccCCCC--CceeEEEecCCcchhh---------hhccccCceEEEecCCce--
Q 014435          330 ---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPVF---------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       330 ---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy---------~~~~~TgD~g~~~~~g~~--  393 (424)
                         .....++|+|+|+++++|+| +++++++.+  +.|||+++|+.++.||         ++||+|||+|++++||.+  
T Consensus       349 ~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~g~~~TGD~~~~~~dg~l~~  427 (539)
T PRK07008        349 DEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLVDGWFPTGDVATIDADGFMQI  427 (539)
T ss_pred             hhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChhhhhcCCCcccCceEEEcCCCcEEE
Confidence               11246789999999999999 577777754  5799999999999999         679999999999999976  


Q ss_pred             -----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           | ++.+|++|+|.+||+++.+||.|.+++|+|
T Consensus       428 ~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~  464 (539)
T PRK07008        428 TDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIA  464 (539)
T ss_pred             eecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEe
Confidence                 3 899999999999999999999999999885

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-54  Score=493.68  Aligned_cols=385  Identities=21%  Similarity=0.300  Sum_probs=322.9

Q ss_pred             ecCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           13 RSLRPPLVL-PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        13 ~~~~~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      .++..++.. ++++||+||.++++++|+.|.++|+++|++|+++++|++++++++|||+++|++++|++|.++.+++.++
T Consensus      3108 ~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~i 3187 (3956)
T PRK12467       3108 TPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYM 3187 (3956)
T ss_pred             CCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHH
Confidence            355666654 4569999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435           92 VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      ++.++++++|+++.....+........+..                    +....... ....+.....++++++++|||
T Consensus      3188 l~~~~~~~vlt~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~a~ii~TS 3246 (3956)
T PRK12467       3188 IEDSGVKLLLTQAHLLEQLPAPAGDTALTL--------------------DRLDLNGY-SENNPSTRVMGENLAYVIYTS 3246 (3956)
T ss_pred             HhCCCCcEEEechhhhhhcccccCCceeee--------------------cchhhccc-CCCCCcccCCCCceEEEEEcc
Confidence            999999999998876554432211111111                    00000000 122233345689999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC--CCHHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--FDIEMALRAI  249 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i  249 (424)
                      ||||.||||+++|+++.+.+..........  .+++++.++|++|..+.. .++.+|..|+++++.+.  +++..+++.|
T Consensus      3247 GSTG~PKgV~~~h~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~i~~~~~~~~~~l~~~i 3323 (3956)
T PRK12467       3247 GSTGKPKGVGVRHGALANHLCWIAEAYELD--ANDRVLLFMSFSFDGAQE-RFLWTLICGGCLVVRDNDLWDPEELWQAI 3323 (3956)
T ss_pred             CCCCCcceeeehhHHHHHHHHHHHHhcCCC--cCCEEEEecCccHhHHHH-HHHHHHhCCCEEEECCcccCCHHHHHHHH
Confidence            999999999999999999887776665554  349999999999998874 78999999999999875  7899999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|++.++|+++..+++...  ..++++||.+++||+++++++.++|.+.++++.++|.||+||++..++.......
T Consensus      3324 ~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~ 3401 (3956)
T PRK12467       3324 HAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGD 3401 (3956)
T ss_pred             HHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccc
Confidence            99999999999999999987542  3357899999999999999999999998888999999999998876654332211


Q ss_pred             ---ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------h-------hccccCceEE
Q 014435          330 ---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------E-------LTVNCNLFSY  386 (424)
Q Consensus       330 ---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~-------~~~~TgD~g~  386 (424)
                         .....++|+|++|++++|+| ++++++|.|+.|||+|+|+.++.||             +       .||+|||+|+
T Consensus      3402 ~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~ 3480 (3956)
T PRK12467       3402 AVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLAR 3480 (3956)
T ss_pred             cccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhhe
Confidence               22346899999999999999 7899999999999999999999999             2       3599999999


Q ss_pred             EecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          387 FRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       387 ~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +++||.+      |  ||++|++|+|.|||++|.+||+|++|+|++
T Consensus      3481 ~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~ 3526 (3956)
T PRK12467       3481 YRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLA 3526 (3956)
T ss_pred             ecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEE
Confidence            9999987      3  999999999999999999999999999974

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=8e-53  Score=415.09  Aligned_cols=399  Identities=25%  Similarity=0.411  Sum_probs=314.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .+++||.||.++++++|++|.+. |+++||+|+++++|+++++++++||+++|++++++++.++.+++.+++++++++++
T Consensus        47 ~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~  126 (562)
T PRK12492         47 GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARAL  126 (562)
T ss_pred             CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEE
Confidence            45799999999999999999985 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCC----CeEEEec-CCCcccc-c--------------cccCCCcccchhhhhhccCCCCCCCCCCCC
Q 014435          101 ITVPELWDKVKDLNL----PAVLLGS-KDKVSSS-G--------------LISRSSKIVSFHDLIELSGSVTDIPDVSVK  160 (424)
Q Consensus       101 i~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (424)
                      ++++.....+.....    ....... .+..... .              ..........+++....... .........
T Consensus       127 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  205 (562)
T PRK12492        127 VYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRG-LSLKPVPVG  205 (562)
T ss_pred             EeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCcccccHHHHHhccCC-CCCCCCCCC
Confidence            998765443322211    1111000 0000000 0              00001112234443322211 111223456


Q ss_pred             CCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhc--------cCCCcEEEEecchHHHHHHHHHHHHHhhcCc
Q 014435          161 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV--------GELDHVVLCVLPMFHVFGLSVILYDQLQKGN  232 (424)
Q Consensus       161 ~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  232 (424)
                      .+++++++|||||||.||+|.++|+++..............        ...+++++..+|++|.+++....+..+..|.
T Consensus       206 ~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~  285 (562)
T PRK12492        206 LDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGN  285 (562)
T ss_pred             cCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCc
Confidence            78999999999999999999999999877665544333211        1123577899999999998766777778888


Q ss_pred             eEEec-CCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEec
Q 014435          233 CVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  311 (424)
Q Consensus       233 ~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (424)
                      ..++. .+.++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+++++.+.++|.+.+ ++++++.
T Consensus       286 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~  364 (562)
T PRK12492        286 HNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT-GCTIVEG  364 (562)
T ss_pred             eEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHHHHHHHh-CCceeec
Confidence            76655 346899999999999999999999999999887665566788999999999999999999999877 6999999


Q ss_pred             ccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhc
Q 014435          312 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELT  378 (424)
Q Consensus       312 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~  378 (424)
                      ||+||++++++...... ....+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||             ++|
T Consensus       365 YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~  442 (562)
T PRK12492        365 YGLTETSPVASTNPYGE-LARLGTVGIPVPGTALKVID-DDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGW  442 (562)
T ss_pred             cCccccCceeeecCCcc-cccCCccceecCCCEEEEEC-CCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCc
Confidence            99999887665543221 33457899999999999999 5889999999999999999999998             479


Q ss_pred             cccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          379 VNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       379 ~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+|||+|+++++|.+       | ++.+|++|+|.+||..|.+||.|.+++|+|
T Consensus       443 ~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~  496 (562)
T PRK12492        443 FKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIG  496 (562)
T ss_pred             eecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            999999999999877       3 889999999999999999999999999875

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.4e-53  Score=412.94  Aligned_cols=389  Identities=22%  Similarity=0.304  Sum_probs=312.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+++||+||.++++++|..|++.|+++|++|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++
T Consensus        29 ~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~  108 (528)
T PRK07470         29 GDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM  108 (528)
T ss_pred             CCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          101 ITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       101 i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      +++++....+....    .....+....          ......+++++..... .........++++++++|||||||.
T Consensus       109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~  177 (528)
T PRK07470        109 ICHADFPEHAAAVRAASPDLTHVVAIGG----------ARAGLDYEALVARHLG-ARVANAAVDHDDPCWFFFTSGTTGR  177 (528)
T ss_pred             EEcchhHHHHHHHHhhCCcCceEEEeCC----------CcccccHHHHHhcCCC-CCCCcccCCCCCeEEEEeCCCCCCC
Confidence            99987655443321    1111111110          0011234444432211 1122334567899999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHHHccc
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRV  254 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~  254 (424)
                      ||+|.++|+++...+..............++++..+|++|.+++. .++ .+..|++.++.+  .+++..+++.++++++
T Consensus       178 PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~  255 (528)
T PRK07470        178 PKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QVARGAATVLLPSERFDPAEVWALVERHRV  255 (528)
T ss_pred             CcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HHhcCceEEEecccCcCHHHHHHHHHhcCC
Confidence            999999999987554332221111123448899999999999985 444 455666665553  4789999999999999


Q ss_pred             eEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC------C
Q 014435          255 TVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL------V  328 (424)
Q Consensus       255 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~------~  328 (424)
                      |++.++|++++.+.+.......+++++|.+++||+++++...+++.+.+ +..+++.||+||+++.+......      .
T Consensus       256 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  334 (528)
T PRK07470        256 TNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPALHDAEDG  334 (528)
T ss_pred             eEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchhhcccccc
Confidence            9999999999999887665666788999999999999999999998888 58899999999988766543221      0


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce---
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN---  393 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~---  393 (424)
                      .....+++|.|+++++++++| +++++++.|+.|||+++|+.++.||            ++||+|||+|+++++|.+   
T Consensus       335 ~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~  413 (528)
T PRK07470        335 PDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYIT  413 (528)
T ss_pred             ccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEe
Confidence            123456889999999999999 6889999999999999999999999            469999999999999977   


Q ss_pred             ----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                          | ++++|++|+|.+||+.|.++|.|.+|+|+|
T Consensus       414 GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~  449 (528)
T PRK07470        414 GRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLG  449 (528)
T ss_pred             CCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEe
Confidence                3 899999999999999999999999999985

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.2e-52  Score=410.41  Aligned_cols=389  Identities=25%  Similarity=0.319  Sum_probs=314.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..+++++++++++
T Consensus        35 ~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~  114 (517)
T PRK08008         35 VRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLV  114 (517)
T ss_pred             cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC------CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          102 TVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       102 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      ++++....+.+..      .+.+.+.....       .......++++....... .........++++++++|||||||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG  186 (517)
T PRK08008        115 TSAQFYPMYRQIQQEDATPLRHICLTRVAL-------PADDGVSSFTQLKAQQPA-TLCYAPPLSTDDTAEILFTSGTTS  186 (517)
T ss_pred             EecchhHHHHHHHhhccccCcEEEEecCCC-------cccccccCHHHHhccCCc-cccccCCCCCCCeEEEEECCCCCC
Confidence            9988766554431      11222221110       111223344443332221 111122345689999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccce
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  255 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  255 (424)
                      .||+|.++|.++............  ...++++++.+|++|..+....++.++..|+++++.+.+++..+++.++++++|
T Consensus       187 ~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  264 (517)
T PRK08008        187 RPKGVVITHYNLRFAGYYSAWQCA--LRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRAT  264 (517)
T ss_pred             CCcEEEEehHHHHHHHHHHhhhcC--CCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCc
Confidence            999999999998765332222222  234589999999999888777788999999999999999999999999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCc
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS  335 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  335 (424)
                      ++.++|.+++.+.............++.+.+++ +++++...+|.+.+ +.++++.||+||+++.+....+. ......+
T Consensus       265 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~  341 (517)
T PRK08008        265 ITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPG-DKRRWPS  341 (517)
T ss_pred             EEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHh-CCeEEeeccccccccccccCCcc-ccccCCc
Confidence            999999999998876544333456788777754 78889999999888 69999999999987655543332 2345578


Q ss_pred             cccccCCcEEEEeeCCCCccCCCCCceeEEEec---CCcchhh-------------hhccccCceEEEecCCce------
Q 014435          336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG---PNVTPVF-------------ELTVNCNLFSYFRSNDHN------  393 (424)
Q Consensus       336 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~---~~~~~gy-------------~~~~~TgD~g~~~~~g~~------  393 (424)
                      +|.|+++++++|+| +++++++.|+.|||+++|   ++++.||             ++||+|||+|+++++|.+      
T Consensus       342 ~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~  420 (517)
T PRK08008        342 IGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRR  420 (517)
T ss_pred             cccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecc
Confidence            99999999999999 689999999999999998   5888898             579999999999999977      


Q ss_pred             -e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       | ++.+|++|+|.+||+++.+||.|.+|+|+|
T Consensus       421 ~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g  453 (517)
T PRK08008        421 CNMIKRGGENVSCVELENIIATHPKIQDIVVVG  453 (517)
T ss_pred             cceEEeCCEEECHHHHHHHHHhCCceeeEEEEc
Confidence             3 889999999999999999999999999986

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.6e-53  Score=413.26  Aligned_cols=383  Identities=17%  Similarity=0.196  Sum_probs=304.4

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      +++.++. ....+||+||.++++++|..|.+.|+ ++||+|+++++|+++++++++||+++|++++|++|.++.+++..+
T Consensus        15 p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~   94 (540)
T PRK13388         15 DDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAAD   94 (540)
T ss_pred             CCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHH
Confidence            3444443 34579999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCCC---CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEe
Q 014435           92 VKDSNPKLVITVPELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  168 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  168 (424)
                      ++.+++++++++++....+.....   ..+.+. .               ..+.+++....  ...+.....++++++++
T Consensus        95 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~-~---------------~~~~~~~~~~~--~~~~~~~~~~~~~a~i~  156 (540)
T PRK13388         95 IRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVD-T---------------PAYAELVAAAG--ALTPHREVDAMDPFMLI  156 (540)
T ss_pred             HHhcCCCEEEEChhhhHHHHhhcccCceEEEcc-c---------------hhhhhhhcccc--CcCCCCCCCCCCeEEEE
Confidence            999999999999877665544321   111110 0               01222222111  11112235679999999


Q ss_pred             cCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHH
Q 014435          169 YSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA  248 (424)
Q Consensus       169 ~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  248 (424)
                      |||||||.||+|.++|+++.............  ..+++++..+|++|.+++...++.++..|+++++.+.+++..+++.
T Consensus       157 ~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  234 (540)
T PRK13388        157 FTSGTTGAPKAVRCSHGRLAFAGRALTERFGL--TRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDD  234 (540)
T ss_pred             ECCCCCCCCCEEEecHHHHHHHHHHHHHHhCC--CCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHH
Confidence            99999999999999999998776665554444  3448999999999999987666678999999999888999999999


Q ss_pred             HHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      ++++++|++..+|..+..++...........+++.+ + |+++++...+++.+.+ ++++++.||+||++.++... +  
T Consensus       235 i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-~--  308 (540)
T PRK13388        235 VRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVRE-P--  308 (540)
T ss_pred             HHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-CCceecccccccccceeecC-C--
Confidence            999999999999999998887654332223456643 3 5567888888998888 69999999999988655432 2  


Q ss_pred             CccCCCccccccCCcEEE-----------EeeCCCCccC-CCCCceeEEEe-cCCcchhh------------hhccccCc
Q 014435          329 GVRRSGSAGTLVAGVEAQ-----------IVSVDTLKPL-PPNQLGEIWVR-GPNVTPVF------------ELTVNCNL  383 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~-----------i~d~~~~~~~-~~g~~Gel~v~-~~~~~~gy------------~~~~~TgD  383 (424)
                       ....+++|+|++++++.           ++| ++|+.+ +.++.|||+++ |+.++.||            ++||+|||
T Consensus       309 -~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD  386 (540)
T PRK13388        309 -GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGD  386 (540)
T ss_pred             -CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccc
Confidence             23567899999997653           344 445554 45679999998 99999999            36999999


Q ss_pred             eEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          384 FSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       384 ~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|+++++|.+       | ++.+|++|+|.+||++|.+||+|.+|+|+|
T Consensus       387 ~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g  435 (540)
T PRK13388        387 LAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYA  435 (540)
T ss_pred             eEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEE
Confidence            9999999976       3 889999999999999999999999999985

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=3.6e-53  Score=412.92  Aligned_cols=377  Identities=19%  Similarity=0.250  Sum_probs=311.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||+||.+++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|+++.++.+++.++++..+++++
T Consensus        22 ~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~i  101 (502)
T TIGR01734        22 QGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELV  101 (502)
T ss_pred             CCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEE
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          101 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++++.........  .+.+                  ...........  .........+++.++++|||||||.||+|
T Consensus       102 i~~~~~~~~~~~~~--~~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~il~TSGTTG~PK~v  159 (502)
T TIGR01734       102 IHTAELSIDAVGTQ--IITL------------------SALEQAETSGG--PVSFDHAVKGDDNYYIIYTSGSTGNPKGV  159 (502)
T ss_pred             EecccccccccCCc--eEEc------------------hHhhhhhhhcC--CccccccCCCCCeEEEEECCCCCCCCCEE
Confidence            99876543322111  1000                  00111111111  11112234578899999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHHHHccceEE
Q 014435          181 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVW  257 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~  257 (424)
                      .++|+++.............  ..+++++...|++|..++. .++.++..|+++++.++   .++..+++.+.+++++.+
T Consensus       160 ~~s~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  236 (502)
T TIGR01734       160 QISHDNLVSFTNWMLADFPL--SEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVW  236 (502)
T ss_pred             EEecHHHHHHHHHHHHhCCC--CCCceEEeecCceechhHH-HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEE
Confidence            99999998877765555433  3448999999999999884 78889999999998865   588999999999999999


Q ss_pred             EechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC---CccCCC
Q 014435          258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV---GVRRSG  334 (424)
Q Consensus       258 ~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~  334 (424)
                      .++|.++..++.........++++|.++++|+++++++.+++.+.++++.+++.||+||+++..+......   ......
T Consensus       237 ~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~  316 (502)
T TIGR01734       237 VSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRL  316 (502)
T ss_pred             EEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcc
Confidence            99999998877665445556789999999999999999999999998899999999999876444322111   123445


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----------------hhccccCceEEEecCCce-----
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----------------ELTVNCNLFSYFRSNDHN-----  393 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----------------~~~~~TgD~g~~~~~g~~-----  393 (424)
                      ++|.+.++++++|+| +++++++.|+.|||+++|+.++.||                .+||+|||+|+++++ ++     
T Consensus       317 ~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR  394 (502)
T TIGR01734       317 PIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGR  394 (502)
T ss_pred             ccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEecc
Confidence            799999999999999 6789999999999999999999999                149999999999976 55     


Q ss_pred             --e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 --D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 --d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                        | ++.+|++|+|.+||+.+.++|.|++|+|++
T Consensus       395 ~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~  428 (502)
T TIGR01734       395 LDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVP  428 (502)
T ss_pred             ccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEE
Confidence              3 899999999999999999999999999974

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.1e-52  Score=411.71  Aligned_cols=385  Identities=22%  Similarity=0.257  Sum_probs=312.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++++.+.....++..++++++++++
T Consensus        45 ~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~l  124 (536)
T PRK10946         45 GERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALL  124 (536)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEE
Confidence            45679999999999999999999999999999999999999999999999999998887777788889999999999999


Q ss_pred             EEcccc--------hHHHhcCC--CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecC
Q 014435          101 ITVPEL--------WDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYS  170 (424)
Q Consensus       101 i~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  170 (424)
                      +++++.        ...+....  ...+.....            .....+.+++....  ...+.....++++++++||
T Consensus       125 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~T  190 (536)
T PRK10946        125 IADRQHALFSDDDFLNTLVAEHSSLRVVLLLND------------DGEHSLDDAINHPA--EDFTATPSPADEVAFFQLS  190 (536)
T ss_pred             EEeccccccchHHHHHHHHhhCCCceEEEEecC------------CCCccHHHHhhCcc--cccccCCCCCCCeEEEEeC
Confidence            998643        12222211  111211111            11122333332221  1122234457899999999


Q ss_pred             CCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHH-HHHHHhhcCceEEecCCCCHHHHHHHH
Q 014435          171 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKFDIEMALRAI  249 (424)
Q Consensus       171 SGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i  249 (424)
                      |||||.||+|+++|+++...+..........  .++++++.+|++|.+++.. ..+.++..|+++++.+.+++..+++.+
T Consensus       191 SGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l  268 (536)
T PRK10946        191 GGSTGTPKLIPRTHNDYYYSVRRSVEICGFT--PQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLI  268 (536)
T ss_pred             CCCCCCCcEEEEehHHHHHHHHHHHHhcCCC--CCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHH
Confidence            9999999999999999998877665555443  3489999999999988754 467889999999998888999999999


Q ss_pred             HHccceEEEechHHHHHHHhcc--ccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL  327 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~  327 (424)
                      +++++|++.++|.++..+++..  ......++++|.+++||+++++.+.+++.+.+ ++++++.||+||+...... ...
T Consensus       269 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~-~~~  346 (536)
T PRK10946        269 EKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTR-LDD  346 (536)
T ss_pred             HHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeec-CCC
Confidence            9999999999999999998762  22334578999999999999999999999988 6999999999996533322 111


Q ss_pred             CCccCCCcccccc-CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce
Q 014435          328 VGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN  393 (424)
Q Consensus       328 ~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~  393 (424)
                      .......++|+|+ +++.++|+| +++++++.|+.|||+++|+.++.||             ++||+|||+|+++++|.+
T Consensus       347 ~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l  425 (536)
T PRK10946        347 SDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYI  425 (536)
T ss_pred             ccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcE
Confidence            1133457899998 789999999 6899999999999999999999999             479999999999999987


Q ss_pred             -------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                             | ++.+|++|+|.+||+.|.+||+|.+++|++
T Consensus       426 ~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~  464 (536)
T PRK10946        426 TVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVS  464 (536)
T ss_pred             EEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEc
Confidence                   3 889999999999999999999999999874

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-52  Score=413.67  Aligned_cols=400  Identities=31%  Similarity=0.488  Sum_probs=313.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|++|..+.+++..+++.++++++
T Consensus        46 ~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~i  125 (563)
T PRK06710         46 LGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVI  125 (563)
T ss_pred             cCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEE
Confidence            45569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCC----CeEEEecCCCcccccc-----------------ccCCCcccchhhhhhccCCCCCCCCCCC
Q 014435          101 ITVPELWDKVKDLNL----PAVLLGSKDKVSSSGL-----------------ISRSSKIVSFHDLIELSGSVTDIPDVSV  159 (424)
Q Consensus       101 i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (424)
                      ++++.....+.....    ..+++...........                 .........++.+.....  ........
T Consensus       126 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  203 (563)
T PRK06710        126 LCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVN--TGVEVPCD  203 (563)
T ss_pred             EEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccccccchhhhhhhhhhccc--cccccccC
Confidence            998865444332211    1111110000000000                 000000001111111000  01011112


Q ss_pred             CCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC
Q 014435          160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK  239 (424)
Q Consensus       160 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  239 (424)
                      ..+++++++|||||||.||+|.++|+++.................++++++.+|++|.+|+...++.++..|+++++.+.
T Consensus       204 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  283 (563)
T PRK06710        204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK  283 (563)
T ss_pred             CCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence            35789999999999999999999999987543322222111123346889999999999987667778999999999888


Q ss_pred             CCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCC
Q 014435          240 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA  319 (424)
Q Consensus       240 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  319 (424)
                      +++..+++.++++++|++.++|+++..+++........++++|.+++||+++++++.+++.+.+ +..+++.||+||++.
T Consensus       284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~  362 (563)
T PRK06710        284 FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSP  362 (563)
T ss_pred             CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccccccCcc
Confidence            9999999999999999999999999999887655555678999999999999999999999888 689999999999887


Q ss_pred             ceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEE
Q 014435          320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYF  387 (424)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~  387 (424)
                      ........ .....+++|+|.+++.++++|++++++++.|+.|||+++|+.++.||            ++||+|||++++
T Consensus       363 ~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~  441 (563)
T PRK06710        363 VTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYM  441 (563)
T ss_pred             ccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEE
Confidence            54432221 13345789999999999999988899999999999999999999999            479999999999


Q ss_pred             ecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +++|.+       | ++.+|++|+|.+||++|.++|.|.+|+|+|
T Consensus       442 ~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~  486 (563)
T PRK06710        442 DEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIG  486 (563)
T ss_pred             cCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEc
Confidence            999876       3 889999999999999999999999999985

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.8e-54  Score=426.75  Aligned_cols=376  Identities=23%  Similarity=0.305  Sum_probs=295.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecC-CCCCC--HHHHHHHHHhcCCe
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA-NPVYT--VSELSKQVKDSNPK   98 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~i~~~l~~~~~~   98 (424)
                      .+.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+ ++..+  .+++.++++.++++
T Consensus        53 ~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~  131 (631)
T PRK07769         53 ARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPS  131 (631)
T ss_pred             eeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCC
Confidence            35799999999999999999986 8999999999999999999999999999999999 55554  67899999999999


Q ss_pred             EEEEcccchHHHhcCCC-------CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435           99 LVITVPELWDKVKDLNL-------PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        99 ~ii~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      ++|++++....+.....       ..++.. +.                ..+..   .  .........++++++|+|||
T Consensus       132 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~---~--~~~~~~~~~~~d~a~i~~TS  189 (631)
T PRK07769        132 AILTTTDSAEGVRKFFRARPAKERPRVIAV-DA----------------VPDEV---G--ATWVPPEANEDTIAYLQYTS  189 (631)
T ss_pred             EEEEChHHHHHHHHHHhhccccccceEEEc-cc----------------ccccc---c--cccCCCCCCCCCeEEEEeCC
Confidence            99999876554432210       011110 00                00000   0  01111234578999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC--C--CHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--F--DIEMALR  247 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~  247 (424)
                      ||||.||+|.++|+++.............  ..+++++..+|++|.+|+. ..+.++..|+++++..+  +  ++..+++
T Consensus       190 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  266 (631)
T PRK07769        190 GSTRIPAGVQITHLNLPTNVLQVIDALEG--QEGDRGVSWLPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIR  266 (631)
T ss_pred             CCCCCCcEEEEcHHHHHHHHHHHHHHcCC--CCcceEEEeCCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHH
Confidence            99999999999999998876665544333  3448999999999999996 45556667888877643  4  8899999


Q ss_pred             HHHHccc---eEEEechHHHHHHHhcc---c--cccCCCCCeeEEEecCCCCCHHHHHHHHHhCC-----CCeEEecccC
Q 014435          248 AIEKYRV---TVWWVVPPIILALAKNS---L--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-----GATIFQGYGM  314 (424)
Q Consensus       248 ~i~~~~~---t~~~~~p~~~~~l~~~~---~--~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~yG~  314 (424)
                      .++++++   +.+.++|.++..+....   .  ....+++++|.+++||+++++++.++|.+.|+     ...+++.||+
T Consensus       267 ~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~  346 (631)
T PRK07769        267 ELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGM  346 (631)
T ss_pred             HHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccch
Confidence            9999886   78999999887766431   1  11346889999999999999999999999873     2469999999


Q ss_pred             ccCCCceeecCCCCC-------------------------ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecC
Q 014435          315 TETCAPISLENPLVG-------------------------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  369 (424)
Q Consensus       315 tE~~~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~  369 (424)
                      ||++..++.......                         .....++|+|.++.+++|+|++++++++.|+.|||+++|+
T Consensus       347 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp  426 (631)
T PRK07769        347 AEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGN  426 (631)
T ss_pred             hhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCC
Confidence            998765554322110                         0112478999999999999977899999999999999999


Q ss_pred             Ccchhh------------h------------------hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHH
Q 014435          370 NVTPVF------------E------------------LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLL  411 (424)
Q Consensus       370 ~~~~gy------------~------------------~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l  411 (424)
                      +++.||            +                  +||+|||+|+++ +|++       | |+++|++|+|.|||++|
T Consensus       427 ~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l  505 (631)
T PRK07769        427 NIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTA  505 (631)
T ss_pred             CccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHH
Confidence            999999            1                  699999999995 8877       3 99999999999999999


Q ss_pred             hc-CCCccc--ceecC
Q 014435          412 VS-HPEILD--AVVIP  424 (424)
Q Consensus       412 ~~-~p~V~~--a~v~g  424 (424)
                      .+ ||.|.+  |+|+|
T Consensus       506 ~~~~p~v~~~~~av~~  521 (631)
T PRK07769        506 QEATKALRTGYVAAFS  521 (631)
T ss_pred             HhccccccCCcEEEEE
Confidence            86 899998  77764

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3e-53  Score=405.29  Aligned_cols=345  Identities=18%  Similarity=0.228  Sum_probs=283.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           24 DPSFSMFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~~gi-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      -+-|+||.++++++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            37899999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             cccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhh
Q 014435          103 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL  182 (424)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  182 (424)
                      +.+.....            .         .         . .   .  .  ......++++++++|||||||.||+|.+
T Consensus        99 ~~~~~~~~------------~---------~---------~-~---~--~--~~~~~~~~~~~~i~~TSGTTG~PKgV~~  140 (452)
T PRK07445         99 LDQLKLSH------------P---------P---------P-L---P--S--QGILPNLETGWIMIPTGGSSGQIRFAIH  140 (452)
T ss_pred             cCcccccc------------C---------C---------C-C---C--c--cccCCCCCCcEEEEeCCCCCCCCcEEEe
Confidence            76532110            0         0         0 0   0  0  0011346889999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEechH
Q 014435          183 THKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP  262 (424)
Q Consensus       183 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~  262 (424)
                      ||+++.............   .+++.++.+|++|.+|+. .++.++..|+++++.+............+++++++.++|.
T Consensus       141 t~~~l~~~~~~~~~~~~~---~~~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~  216 (452)
T PRK07445        141 TWETLTASVQGFQRYFQL---QQVNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPT  216 (452)
T ss_pred             chHHHHHHHHHHHHHhcC---CCCceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHH
Confidence            999998776655444332   224678899999999995 6778899999999886432222233445788999999999


Q ss_pred             HHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCC
Q 014435          263 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG  342 (424)
Q Consensus       263 ~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~  342 (424)
                      ++..+.+..   ...++++|.+++||+++++++.+++++.  ++++++.||+||++..+....+.......+++|+|.++
T Consensus       217 ~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~  291 (452)
T PRK07445        217 QLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPH  291 (452)
T ss_pred             HHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCCcCCccCCC
Confidence            999988632   2347899999999999999999988764  78999999999987655443333222345689999999


Q ss_pred             cEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------hhccccCceEEEecCCce-------e-eEeeeeeeChhhH
Q 014435          343 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAEL  407 (424)
Q Consensus       343 ~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~i  407 (424)
                      ++++|+         .|+.|||+++|+.++.||       ++||+|||+|++++||++       | ++.+|++|+|.+|
T Consensus       292 ~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eI  362 (452)
T PRK07445        292 AQITIP---------ANQTGNITIQAQSLALGYYPQILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEV  362 (452)
T ss_pred             CeEEEc---------CCCcceEEEeCCccchhhcCCccCCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHH
Confidence            999997         367899999999999999       589999999999999987       3 9999999999999


Q ss_pred             HHHHhcCCCcccceecC
Q 014435          408 EGLLVSHPEILDAVVIP  424 (424)
Q Consensus       408 E~~l~~~p~V~~a~v~g  424 (424)
                      |++|.+||+|.+|+|+|
T Consensus       363 E~~l~~~p~V~~a~V~g  379 (452)
T PRK07445        363 EAAILATGLVQDVCVLG  379 (452)
T ss_pred             HHHHHhCCCcceEEEEe
Confidence            99999999999999985

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.5e-52  Score=398.05  Aligned_cols=372  Identities=22%  Similarity=0.325  Sum_probs=310.4

Q ss_pred             cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEcc
Q 014435           26 SFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP  104 (424)
Q Consensus        26 Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~  104 (424)
                      ||.||.+.++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            899999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhhcH
Q 014435          105 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH  184 (424)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~  184 (424)
                      +....+.............                 ....... .............+++++++|||||||.||+|.++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~  142 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPL-----------------ELAALDD-APAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTH  142 (408)
T ss_pred             chhhhccccCCceEEechh-----------------hhhhccc-ccccccccCCCCCCCcEEEEEcCCCCCCCCEEEecc
Confidence            8776665543222221110                 0000000 000111111245789999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCC---HHHHHHHHHHccceEEEech
Q 014435          185 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD---IEMALRAIEKYRVTVWWVVP  261 (424)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~p  261 (424)
                      +++..............  ..+++++..|++|..++. .++.++..|+++++.+...   +..+.+.++++++|.+.++|
T Consensus       143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p  219 (408)
T TIGR01733       143 RSLVNLLAWLARRYGLD--PDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP  219 (408)
T ss_pred             HHHHHHHHHHHHhcCCC--CCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence            99998877776644443  448999999999999884 7899999999999887643   68999999999999999999


Q ss_pred             HHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC-cc--CCCcccc
Q 014435          262 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG-VR--RSGSAGT  338 (424)
Q Consensus       262 ~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~--~~~~~G~  338 (424)
                      .+++.+.+...   ..++++|.+++||+++++++.+++.+.++++.+++.||+||+++++........ ..  +..++|.
T Consensus       220 ~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~  296 (408)
T TIGR01733       220 SLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGR  296 (408)
T ss_pred             HHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCc
Confidence            99999988754   457899999999999999999999999966999999999999876653222111 11  2678999


Q ss_pred             ccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhh---------------------ccccCceEEEecCCce----
Q 014435          339 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFEL---------------------TVNCNLFSYFRSNDHN----  393 (424)
Q Consensus       339 ~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~---------------------~~~TgD~g~~~~~g~~----  393 (424)
                      |.++++++|+|+ ++++++.|+.|||+++|+.++.||-+                     ||+|||+|+++++|++    
T Consensus       297 ~~~~~~~~i~~~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~g  375 (408)
T TIGR01733       297 PLANTRLYVLDD-DLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLG  375 (408)
T ss_pred             ccCCceEEEECC-CCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEee
Confidence            999999999995 58999999999999999999999921                     9999999999999877    


Q ss_pred             ---e-eEeeeeeeChhhHHHHHhcCCCccccee
Q 014435          394 ---D-FFCKLFQVAPAELEGLLVSHPEILDAVV  422 (424)
Q Consensus       394 ---d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v  422 (424)
                         | ++.+|++|+|.+||+.+.++|.|.+|+|
T Consensus       376 R~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       376 RIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence               3 8899999999999999999999999986

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.3e-52  Score=414.04  Aligned_cols=398  Identities=22%  Similarity=0.308  Sum_probs=300.4

Q ss_pred             CCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHH
Q 014435           15 LRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK   93 (424)
Q Consensus        15 ~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~   93 (424)
                      ++.++. .+.++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus        29 ~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~  108 (579)
T PLN03102         29 NRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILR  108 (579)
T ss_pred             CCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHh
Confidence            344443 3457999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEcccchHHHhcCC-----------CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCC---CCCCC
Q 014435           94 DSNPKLVITVPELWDKVKDLN-----------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI---PDVSV  159 (424)
Q Consensus        94 ~~~~~~ii~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  159 (424)
                      .++++++|++++....+....           .+.+.+.......     .......++.++..........   .....
T Consensus       109 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (579)
T PLN03102        109 HAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEELDYECLIQRGEPTPSLVARMFRIQ  183 (579)
T ss_pred             ccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccccCHHHHHhccCCCCcccccccccC
Confidence            999999999887665544321           1122211110000     0001122344443322211100   01123


Q ss_pred             CCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC
Q 014435          160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK  239 (424)
Q Consensus       160 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  239 (424)
                      .++++++++|||||||.||+|+++|+++.........  .......+++++.+|++|..++. ..+.++..|+++++.+.
T Consensus       184 ~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~--~~~~~~~~~~l~~~pl~h~~g~~-~~~~~~~~g~~~v~~~~  260 (579)
T PLN03102        184 DEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAII--GWEMGTCPVYLWTLPMFHCNGWT-FTWGTAARGGTSVCMRH  260 (579)
T ss_pred             CCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHh--hcCCCCCCeEEecCChhhhcchh-HHHHHHHhcCcEEeecc
Confidence            5689999999999999999999999987544332222  22223347888999999999985 55667788888888888


Q ss_pred             CCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCC
Q 014435          240 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA  319 (424)
Q Consensus       240 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  319 (424)
                      +++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++++ + ++++++.||+||+++
T Consensus       261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~  338 (579)
T PLN03102        261 VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATG  338 (579)
T ss_pred             CChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCc
Confidence            89999999999999999999999999998865444334567888999999999999999876 4 689999999999876


Q ss_pred             ceeecCCCC------C------ccCCCccccccCCcEEEEeeCCCCccCCC--CCceeEEEecCCcchhh----------
Q 014435          320 PISLENPLV------G------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPVF----------  375 (424)
Q Consensus       320 ~~~~~~~~~------~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy----------  375 (424)
                      .+.......      .      ....+..+.+.+  .+++.+.+.+++++.  ++.|||+++|+.++.||          
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~  416 (579)
T PLN03102        339 PVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEA  416 (579)
T ss_pred             cccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhh
Confidence            443221100      0      011223333333  456667566777764  36899999999999999          


Q ss_pred             --hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          376 --ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 --~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                        ++||+|||+|+++++|.+       | ++.+|++|+|.+||.+|.+||.|.+|+|+|
T Consensus       417 f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~  475 (579)
T PLN03102        417 FKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVA  475 (579)
T ss_pred             hccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEe
Confidence              579999999999999987       3 889999999999999999999999999985

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2e-52  Score=407.90  Aligned_cols=386  Identities=24%  Similarity=0.356  Sum_probs=317.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++
T Consensus        27 ~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~  106 (508)
T TIGR02262        27 DISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVV  106 (508)
T ss_pred             CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          101 ITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       101 i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      +++++....+.....     ..++.....          ......+.+......  .........++++++++|||||||
T Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG  174 (508)
T TIGR02262       107 FVSGELLPVIKAALGKSPHLEHRVVVGRP----------EAGEVQLAELLATES--EQFKPAATQADDPAFWLYSSGSTG  174 (508)
T ss_pred             EEchhhHHHHHHHHhcCCCccEEEEeCCC----------CcccccHHHHhhcCC--CccCCCCCCCCCcEEEEeCCCCCC
Confidence            999876665443211     112111110          011123333332222  122223445789999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHH-HhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CCHHHHHHHHHHcc
Q 014435          176 VSKGVILTHKNFIAASLMI-SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYR  253 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~  253 (424)
                      .||+|.++|+++...+... .....  ...+++++..+|++|.+++...++.++..|+++++.+. +++..+++.|++++
T Consensus       175 ~PK~v~~s~~~~~~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  252 (508)
T TIGR02262       175 MPKGVVHTHSNPYWTAELYARNTLG--IREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQ  252 (508)
T ss_pred             CCcEEEEechhHHHHHHHHhHHhcC--CCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHC
Confidence            9999999999998765542 22222  23448999999999999997677788999999988754 68999999999999


Q ss_pred             ceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCC
Q 014435          254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS  333 (424)
Q Consensus       254 ~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~  333 (424)
                      +|++.++|.++..+++..........++|.++++|+++++++.+.|.+.+ ++++++.||+||+++++......  ....
T Consensus       253 ~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~--~~~~  329 (508)
T TIGR02262       253 PTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLPG--DVRY  329 (508)
T ss_pred             CcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCcc--CCCC
Confidence            99999999999988776544444567899999999999999999999988 68999999999998765543322  3456


Q ss_pred             CccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------e
Q 014435          334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       334 ~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      +++|.|.++++++|+| +++++++.|+.|||+++|+.++.+|            ++||+|||+++++++|.+       |
T Consensus       330 ~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d  408 (508)
T TIGR02262       330 GTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDD  408 (508)
T ss_pred             CCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccccc
Confidence            7899999999999999 7899999999999999999999999            469999999999998866       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       ++.+|++|+|.+||+.|.++|+|.++++++
T Consensus       409 ~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~  439 (508)
T TIGR02262       409 MLKVSGIYVSPFEIESALIQHPAVLEAAVVG  439 (508)
T ss_pred             eeeeCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence             889999999999999999999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-52  Score=410.11  Aligned_cols=400  Identities=25%  Similarity=0.393  Sum_probs=316.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++
T Consensus        45 ~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~v  124 (557)
T PRK07059         45 MGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAI  124 (557)
T ss_pred             cCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC----CCeEEEecCCCcccc---------------ccccCCCcccchhhhhhccCCCCCCCCCCCCC
Q 014435          101 ITVPELWDKVKDLN----LPAVLLGSKDKVSSS---------------GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ  161 (424)
Q Consensus       101 i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (424)
                      ++++.....+....    ...+.+.........               ...........+++.+..... .........+
T Consensus       125 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  203 (557)
T PRK07059        125 VVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGAR-QTFKPVKLGP  203 (557)
T ss_pred             EEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCCcccHHHHhhccCC-CCCCCCCCCc
Confidence            99887655443321    111111110000000               000011122334444433221 1222334567


Q ss_pred             CCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhh----c-cCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEe
Q 014435          162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL----V-GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  236 (424)
Q Consensus       162 ~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~  236 (424)
                      +++++++|||||||.||+|.++|.++...+.........    . ......+++.+|++|.+++....+.++..|++.++
T Consensus       204 ~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~  283 (557)
T PRK07059        204 DDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNIL  283 (557)
T ss_pred             CceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEE
Confidence            899999999999999999999999987765433222211    1 11225678889999999886667777877877665


Q ss_pred             cC-CCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCc
Q 014435          237 MG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT  315 (424)
Q Consensus       237 ~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~t  315 (424)
                      .+ ..++..+++.++++++|.+.++|.++..+.+.......+++++|.++.||+++++.+.++|.+.+ ++++++.||+|
T Consensus       284 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~t  362 (557)
T PRK07059        284 IPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLS  362 (557)
T ss_pred             ecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccc
Confidence            54 46889999999999999999999999999887665566778999999999999999999999888 69999999999


Q ss_pred             cCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccC
Q 014435          316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCN  382 (424)
Q Consensus       316 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~Tg  382 (424)
                      |++.++...... .....+++|.|+++++++|+| +++++++.|+.|||+++|+.++.||             ++||+||
T Consensus       363 E~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG  440 (557)
T PRK07059        363 ETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG  440 (557)
T ss_pred             cccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence            998766544322 233467899999999999999 6789999999999999999999998             5899999


Q ss_pred             ceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          383 LFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       383 D~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+++++++|.+       | ++++|++|+|.+||++|.++|+|.+++|+|
T Consensus       441 Dl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~  490 (557)
T PRK07059        441 DVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVG  490 (557)
T ss_pred             cEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEe
Confidence            99999999876       3 889999999999999999999999999875

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-52  Score=404.51  Aligned_cols=361  Identities=24%  Similarity=0.298  Sum_probs=300.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+++||+||.++++++|..|+     ++|+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++
T Consensus        22 ~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i   96 (471)
T PRK07787         22 GGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAW   96 (471)
T ss_pred             CCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEE
Confidence            4567999999999999999996     46899999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          101 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++++...  ...  .......              ....            ........++++++++|||||||.||+|
T Consensus        97 l~~~~~~~--~~~--~~~~~~~--------------~~~~------------~~~~~~~~~~~~a~i~~TSGTTG~PK~v  146 (471)
T PRK07787         97 LGPAPDDP--AGL--PHVPVRL--------------HARS------------WHRYPEPDPDAPALIVYTSGTTGPPKGV  146 (471)
T ss_pred             EecCCccc--ccc--cceeeec--------------cccc------------cccCCCCCCCceEEEEECCCCCCCCCEE
Confidence            99763110  000  0000000              0000            0011123568999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEec
Q 014435          181 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV  260 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  260 (424)
                      .++|+++.............  ..+++++..+|++|.+|+...++.++..|+++++.+.+++..+++.++ +++|++.++
T Consensus       147 ~~t~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~  223 (471)
T PRK07787        147 VLSRRAIAADLDALAEAWQW--TADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGV  223 (471)
T ss_pred             EEeHHHHHHHHHHHHHhcCC--CccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcc
Confidence            99999998887666555444  344899999999999999878999999999999998899999999999 999999999


Q ss_pred             hHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcccccc
Q 014435          261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV  340 (424)
Q Consensus       261 p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~  340 (424)
                      |+++..+.+.... ...++++|.+++||+++++.+.++|.+.+ +.++++.||+||++...+.....  ....+++|+|+
T Consensus       224 P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~  299 (471)
T PRK07787        224 PTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRADG--ERRPGWVGLPL  299 (471)
T ss_pred             hHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCCCC--cccCCcccccC
Confidence            9999999875432 23578999999999999999999999988 68999999999987654433222  34567899999


Q ss_pred             CCcEEEEeeCCCCccCC-CCC-ceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e--eE
Q 014435          341 AGVEAQIVSVDTLKPLP-PNQ-LGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D--FF  396 (424)
Q Consensus       341 ~~~~~~i~d~~~~~~~~-~g~-~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d--i~  396 (424)
                      ++++++|+| +++++++ .|+ .|||+++|+.++.||             ++||+|||+|++++||.+       |  ++
T Consensus       300 ~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~  378 (471)
T PRK07787        300 AGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIK  378 (471)
T ss_pred             CCcEEEEEC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEe
Confidence            999999999 4678776 454 899999999999999             469999999999999876       3  88


Q ss_pred             eeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          397 CKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       397 ~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      .+|++|+|.+||++|.++|.|++++|+|
T Consensus       379 ~~G~~v~~~eIE~~l~~~~~v~~~~v~~  406 (471)
T PRK07787        379 SGGYRIGAGEIETALLGHPGVREAAVVG  406 (471)
T ss_pred             eCCEEECHHHHHHHHHhCCCcceEEEEc
Confidence            9999999999999999999999999985

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-52  Score=408.75  Aligned_cols=393  Identities=21%  Similarity=0.271  Sum_probs=309.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++
T Consensus        32 ~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~i  111 (540)
T PRK06164         32 EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWL  111 (540)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchH-----HHhcCC------CCeEEEecCCCccccccccCCCcccchhhhhhccCCC--CCCCCCCCCCCCEEEE
Q 014435          101 ITVPELWD-----KVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV--TDIPDVSVKQTDAAAL  167 (424)
Q Consensus       101 i~~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i  167 (424)
                      ++++++..     .+....      ...+..........    . ......+.+........  .........+++++++
T Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  186 (540)
T PRK06164        112 VVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT----P-APAPGARVQLFALPDPAPPAAAGERAADPDAGALL  186 (540)
T ss_pred             EEccccccccHHHHhhcccccccCCcceEEEeccCcccC----C-CCCcccccccccccccCCcccccccCCCCCceEEE
Confidence            99876421     121111      11111111000000    0 00000001111100000  0001122346889999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR  247 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  247 (424)
                      +|||||||.||+|.++|+++..............  .++++++.+|++|.+|+. .++.++..|+++++.+.+++..+++
T Consensus       187 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~  263 (540)
T PRK06164        187 FTTSGTTSGPKLVLHRQATLLRHARAIARAYGYD--PGAVLLAALPFCGVFGFS-TLLGALAGGAPLVCEPVFDAARTAR  263 (540)
T ss_pred             EECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCC--CCCEEEEcCCchhHHHHH-HHHHHHhcCceEEecCCCCHHHHHH
Confidence            9999999999999999999998877666555543  448999999999999995 7889999999999999899999999


Q ss_pred             HHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecC-CCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCC
Q 014435          248 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA-APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP  326 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~  326 (424)
                      .++++++|+++++|+++..|.+.. ....+++++|.+..+| .+...++.+++.+.  ++++++.||+||+++.++....
T Consensus       264 ~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~  340 (540)
T PRK06164        264 ALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPA  340 (540)
T ss_pred             HHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCC
Confidence            999999999999999999998873 3445688999887765 55556777777665  6899999999999876655433


Q ss_pred             CCC-ccCCCcccccc-CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCC
Q 014435          327 LVG-VRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSND  391 (424)
Q Consensus       327 ~~~-~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g  391 (424)
                      ... .....+.|.+. ++++++|+|++++++++.|+.||||++|++++.||             ++||+|||+|+++++|
T Consensus       341 ~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g  420 (540)
T PRK06164        341 TDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG  420 (540)
T ss_pred             CCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCc
Confidence            211 22334567775 78999999988899999999999999999999999             5799999999999999


Q ss_pred             ce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          392 HN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       392 ~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      .+       | ++.+|++|+|.+||+.|.+||+|.+++|+|
T Consensus       421 ~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~  461 (540)
T PRK06164        421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVG  461 (540)
T ss_pred             eEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEe
Confidence            76       3 899999999999999999999999999875

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-51  Score=407.56  Aligned_cols=402  Identities=23%  Similarity=0.335  Sum_probs=315.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++.+||.||.+++.++|..|.++|+++|++|+++++|+++++++++||+++|++++|++|..+.+++.+++++++++++
T Consensus        55 ~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~i  134 (567)
T PRK06178         55 YGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVL  134 (567)
T ss_pred             CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCC----CeEEEec-CCCccccccccCC-------CcccchhhhhhccCC-CCCCCCCCCCCCCEEEE
Q 014435          101 ITVPELWDKVKDLNL----PAVLLGS-KDKVSSSGLISRS-------SKIVSFHDLIELSGS-VTDIPDVSVKQTDAAAL  167 (424)
Q Consensus       101 i~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i  167 (424)
                      ++++...+.+..+..    ..+.+.. .+...........       .....+.+++..... ..........+++++++
T Consensus       135 i~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  214 (567)
T PRK06178        135 LALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAAL  214 (567)
T ss_pred             EEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEE
Confidence            999887766554321    1222111 1100000000000       000111122211110 01112233567899999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR  247 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  247 (424)
                      +|||||||.||+|.++|.++........... ......++++..+|++|.+|+...++.++..|+++++.+++++..++.
T Consensus       215 ~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~  293 (567)
T PRK06178        215 NYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA-VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMA  293 (567)
T ss_pred             EeCCCCCCCCceEEeccHHHHHHHHHHHHHh-ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHH
Confidence            9999999999999999999887654432221 223445899999999999998767888999999999999899999999


Q ss_pred             HHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEe--cCCCCCHHHHHHHHHhCCCCeEE-ecccCccCCCceeec
Q 014435          248 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS--GAAPLGKELMEDCQKNIPGATIF-QGYGMTETCAPISLE  324 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~--~g~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~  324 (424)
                      .++++++|++.++|..+..+.........+++++|.+..  .++.+++++.+.|++.++ ..++ +.||+||+++.+...
T Consensus       294 ~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~YG~tE~~~~~~~~  372 (567)
T PRK06178        294 AVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTG-SVLAEAAWGMTETHTCDTFT  372 (567)
T ss_pred             HHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhC-Ccccccccccccccccceec
Confidence            999999999999999999988765555556778888654  458999999999999885 5555 579999987655443


Q ss_pred             CCCC-----CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEE
Q 014435          325 NPLV-----GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYF  387 (424)
Q Consensus       325 ~~~~-----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~  387 (424)
                      ....     ....++++|+|++|++++|+|++++++++.|+.|||+++|++++.||            ++||+|||+|++
T Consensus       373 ~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~  452 (567)
T PRK06178        373 AGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKI  452 (567)
T ss_pred             cccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceEEE
Confidence            2111     12345679999999999999987899999999999999999999999            579999999999


Q ss_pred             ecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +++|.+       | ++.+|++|+|.+||+++.++|+|.+++|+|
T Consensus       453 ~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~  497 (567)
T PRK06178        453 DEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVG  497 (567)
T ss_pred             ecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEc
Confidence            999876       3 889999999999999999999999999875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=7.4e-53  Score=489.27  Aligned_cols=386  Identities=19%  Similarity=0.263  Sum_probs=320.9

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      +++.++. .++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus       525 p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il  604 (5163)
T PRK12316        525 PEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYML  604 (5163)
T ss_pred             CCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHH
Confidence            4445554 345799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +.+++++++++.+....+.......++....                 .........  ...+.....++++++++||||
T Consensus       605 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~a~ii~TSG  665 (5163)
T PRK12316        605 EDSGVQLLLSQSHLGRKLPLAAGVQVLDLDR-----------------PAAWLEGYS--EENPGTELNPENLAYVIYTSG  665 (5163)
T ss_pred             HhCCCCEEEEChhhhhhCCcccCceEEEecC-----------------cchhhccCC--CCCCCCCCCCCCeEEEEECCC
Confidence            9999999999876654432211111111100                 000011001  122223456789999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC---CCCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---KFDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i  249 (424)
                      |||.||||+++|+++...+..........  .+++++..+|++|..++. .++.+|..|+++++.+   .+++..+.+.+
T Consensus       666 STG~PKgV~~~h~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~fd~~~~-~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i  742 (5163)
T PRK12316        666 STGKPKGAGNRHRALSNRLCWMQQAYGLG--VGDTVLQKTPFSFDVSVW-EFFWPLMSGARLVVAAPGDHRDPAKLVELI  742 (5163)
T ss_pred             cCCCCCEeeEcCHHHHHHHHHHHHhcCCC--CCCEEEeeCCeehHHHHH-HHHHHHhCCCEEEECCccccCCHHHHHHHH
Confidence            99999999999999998877766655543  348999999999999985 7889999999999985   37899999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|++.++|++++.|++...  ...++++|.+++||+++++++.++|.+.+++++++|.||+||++..++.......
T Consensus       743 ~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~  820 (5163)
T PRK12316        743 NREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEE  820 (5163)
T ss_pred             HHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccc
Confidence            99999999999999999987543  2357899999999999999999999888888999999999998854443332222


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------------hhccccCceEEEecC
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------------ELTVNCNLFSYFRSN  390 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------------~~~~~TgD~g~~~~~  390 (424)
                      .....++|+|++|++++|+| ++++++|.|+.|||+|+|+.++.||                   ++||+|||+|++++|
T Consensus       821 ~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~d  899 (5163)
T PRK12316        821 GGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRAD  899 (5163)
T ss_pred             cCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCC
Confidence            34566899999999999999 6899999999999999999999999                   138999999999999


Q ss_pred             Cce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          391 DHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       391 g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |.+      |  ||++|++|+|.|||++|.+||+|++|+|++
T Consensus       900 G~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~  941 (5163)
T PRK12316        900 GVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLA  941 (5163)
T ss_pred             CCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEE
Confidence            987      3  999999999999999999999999999975

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.5e-52  Score=405.43  Aligned_cols=385  Identities=24%  Similarity=0.320  Sum_probs=314.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++++++|..+.+++..+++.++++.++
T Consensus        35 ~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~  114 (524)
T PRK06188         35 DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLI  114 (524)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eccc-chHHHhcCCCC----eEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPE-LWDKVKDLNLP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      +++. +..........    ..+......          .....+.+......  .........++++++++|||||||.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~  182 (524)
T PRK06188        115 VDPAPFVERALALLARVPSLKHVLTLGPV----------PDGVDLLAAAAKFG--PAPLVAAALPPDIAGLAYTGGTTGK  182 (524)
T ss_pred             EecchhhHHHHHHhhhcCCceEEEEeCCc----------cchhhHHHhhhccC--cccccccCCCCCeEEEEeCCCCCCC
Confidence            9876 33332221110    011111100          00001111111001  1111122345679999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|.++..............  .++++++.+|++|..++.  ++.++..|+++++.+.+++..+++.++++++|+
T Consensus       183 pk~v~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  258 (524)
T PRK06188        183 PKGVMGTHRSIATMAQIQLAEWEWP--ADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITA  258 (524)
T ss_pred             CceeeeehHHHHHHHHHHHhhcCCC--cCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEE
Confidence            9999999999998777655554443  348999999999998874  567899999999999999999999999999999


Q ss_pred             EEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC----CccC
Q 014435          257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV----GVRR  332 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~----~~~~  332 (424)
                      ++++|+++..+++.......+++++|.+++||++++++..+.+.+.+ +..+++.||+||++..++......    ....
T Consensus       259 ~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  337 (524)
T PRK06188        259 TFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKR  337 (524)
T ss_pred             EEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhcccccccc
Confidence            99999999999988766666789999999999999999999998888 578999999999976555433221    1235


Q ss_pred             CCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------
Q 014435          333 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------  393 (424)
Q Consensus       333 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------  393 (424)
                      ..++|+|+++++++|+| +++++++.|+.|||+++|+.++.||            ++||+|||+|+++++|.+       
T Consensus       338 ~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~  416 (524)
T PRK06188        338 LTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKK  416 (524)
T ss_pred             CCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccc
Confidence            56899999999999999 5799999999999999999999999            569999999999999876       


Q ss_pred             e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      | ++++|++|+|.+||++|.++|+|.+++|+|
T Consensus       417 ~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~  448 (524)
T PRK06188        417 DMIVTGGFNVFPREVEDVLAEHPAVAQVAVIG  448 (524)
T ss_pred             cceecCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            3 889999999999999999999999999875

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.5e-53  Score=421.05  Aligned_cols=375  Identities=20%  Similarity=0.299  Sum_probs=290.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecC-CCCCC--HHHHHHHHHhcCCeE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA-NPVYT--VSELSKQVKDSNPKL   99 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~i~~~l~~~~~~~   99 (424)
                      +.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+ ++.++  .+++.++++.+++++
T Consensus        67 ~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~  145 (612)
T PRK12476         67 VELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTV  145 (612)
T ss_pred             eEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCE
Confidence            4799999999999999999986 9999999999999999999999999999999999 57766  789999999999999


Q ss_pred             EEEcccchHHHhcCCC-------CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435          100 VITVPELWDKVKDLNL-------PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus       100 ii~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +|++++....+.....       ..++....                    +.....  .........++++++|+||||
T Consensus       146 li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------~~~~~~--~~~~~~~~~~~d~a~i~yTSG  203 (612)
T PRK12476        146 VLTTTAAAEAVEGFLRNLPRLRRPRVIAIDA--------------------IPDSAG--ESFVPVELDTDDVSHLQYTSG  203 (612)
T ss_pred             EEEcHHHHHHHHHHHhhcccccCceEEEecc--------------------cccccc--ccccCCCCCCCceEEEEeCCC
Confidence            9998876654432210       11111100                    000000  111112345689999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CC--CHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KF--DIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~--~~~~~~~~i  249 (424)
                      |||.||+|.++|+++...+......... ...++++++.+|++|.+|+...++..+..|.++++.+ .+  ++..+++.+
T Consensus       204 TTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i  282 (612)
T PRK12476        204 STRPPVGVEITHRAVGTNLVQMILSIDL-LDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKAL  282 (612)
T ss_pred             CCCCCceEEeeHHHHHHHHHHHHHHhcc-CCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHH
Confidence            9999999999999998765544333331 2344899999999999999655555566565555543 23  889999999


Q ss_pred             H--HccceEEEechHHHHHHHhccc----cccCCCCCeeEEEecCCCCCHHHHHHHHHhCC-----CCeEEecccCccCC
Q 014435          250 E--KYRVTVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-----GATIFQGYGMTETC  318 (424)
Q Consensus       250 ~--~~~~t~~~~~p~~~~~l~~~~~----~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~yG~tE~~  318 (424)
                      +  ++++++++.+|.++..++....    ....+++++| +++||+++++++.++|.+.|+     ...+++.||+||++
T Consensus       283 ~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~  361 (612)
T PRK12476        283 SEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEAT  361 (612)
T ss_pred             hhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhh
Confidence            5  4899999999998887776421    1234678999 999999999999999999773     24599999999987


Q ss_pred             CceeecCCCCC-------------------------ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcch
Q 014435          319 APISLENPLVG-------------------------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP  373 (424)
Q Consensus       319 ~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~  373 (424)
                      ..++...+...                         ....+++|+|+++++++|+|++++++++.|+.|||+++|++++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~  441 (612)
T PRK12476        362 LFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGR  441 (612)
T ss_pred             eeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccc
Confidence            65443222100                         01235789999999999999655999999999999999999999


Q ss_pred             hh-----------h--------------------hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhc-
Q 014435          374 VF-----------E--------------------LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVS-  413 (424)
Q Consensus       374 gy-----------~--------------------~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~-  413 (424)
                      ||           .                    +||+|||+|+++ +|++       | |+++|++|+|.|||++|.+ 
T Consensus       442 GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~  520 (612)
T PRK12476        442 GYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEA  520 (612)
T ss_pred             cccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHh
Confidence            99           1                    399999999985 8887       3 9999999999999999985 


Q ss_pred             CCCccc--ceec
Q 014435          414 HPEILD--AVVI  423 (424)
Q Consensus       414 ~p~V~~--a~v~  423 (424)
                      ||.|.+  ++|+
T Consensus       521 ~p~V~~~~v~v~  532 (612)
T PRK12476        521 SPMVRRGYVTAF  532 (612)
T ss_pred             cccccCCcEEEE
Confidence            899999  4444

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.2e-52  Score=449.23  Aligned_cols=382  Identities=19%  Similarity=0.276  Sum_probs=315.3

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++.+++. ..+.+||+||.++++++|+.|.+.|+++|++|+++++++++++++++||+++|++++|++|.++.+++..++
T Consensus       472 p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l  551 (1296)
T PRK10252        472 PDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMML  551 (1296)
T ss_pred             CCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHH
Confidence            3444443 455799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +.+++++++++.+....+.....-. .                   ..+.......   ...+.....++++++++||||
T Consensus       552 ~~~~~~~~i~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSG  608 (1296)
T PRK10252        552 EDARPSLLITTADQLPRFADVPDLT-S-------------------LCYNAPLAPQ---GAAPLQLSQPHHTAYIIFTSG  608 (1296)
T ss_pred             HhCCCCEEEECcchhhhcccCCCce-e-------------------eecccccccc---cCCCCCCCCCCCeEEEEECCC
Confidence            9999999999987655443321000 0                   0011111000   111112235789999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i  249 (424)
                      |||.||+|+++|+++...............  +++++...|++|..+++ .++.+|..|+++++.++   .++..+.+.+
T Consensus       609 STG~PKgV~~~h~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i  685 (1296)
T PRK10252        609 STGRPKGVMVGQTAIVNRLLWMQNHYPLTA--DDVVLQKTPCSFDVSVW-EFFWPFIAGAKLVMAEPEAHRDPLAMQQFF  685 (1296)
T ss_pred             CCCCCCEEEeccHHHHHHHHHHHHhcCCCC--CCEEEEeCCcchhhhHH-HHHHHHhCCCEEEECChhccCCHHHHHHHH
Confidence            999999999999999988776665555533  49999999999998885 77889999999999763   6899999999


Q ss_pred             HHccceEEEechHHHHHHHhcccccc--CCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL  327 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~  327 (424)
                      +++++|++.++|+++..+++......  ..++++|.+++||+++++++.++|.+.+ ++++++.||+||++..++.....
T Consensus       686 ~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~  764 (1296)
T PRK10252        686 AEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAF  764 (1296)
T ss_pred             HHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecc
Confidence            99999999999999999887643322  2468999999999999999999999877 68999999999988766543322


Q ss_pred             CC-----ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------------hhccccCc
Q 014435          328 VG-----VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------------ELTVNCNL  383 (424)
Q Consensus       328 ~~-----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------------~~~~~TgD  383 (424)
                      ..     .....++|+|+++++++|+| +++++++.|..|||+++|+.++.||                   ++||+|||
T Consensus       765 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGD  843 (1296)
T PRK10252        765 GEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGD  843 (1296)
T ss_pred             cccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCc
Confidence            11     23346799999999999999 7999999999999999999999999                   12899999


Q ss_pred             eEEEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          384 FSYFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       384 ~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                      +|++++||.+      |  ++++|++|+|.|||++|.+||+|.+|+|+
T Consensus       844 l~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~  891 (1296)
T PRK10252        844 VARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTH  891 (1296)
T ss_pred             eEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEE
Confidence            9999999987      3  99999999999999999999999999765

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.4e-52  Score=452.27  Aligned_cols=389  Identities=19%  Similarity=0.204  Sum_probs=307.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++++||+||.++++++|++|++.|+++|++|+++++|+++++++++||+++|++++|++|.++.+++..+++.++++++
T Consensus       267 ~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~l  346 (1389)
T TIGR03443       267 KTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRAL  346 (1389)
T ss_pred             CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccch---HHHhcCCC---------CeEEEecCCCccccccccCCCcccch--hhhhhccCC-CCCCCCCCCCCCCEE
Q 014435          101 ITVPELW---DKVKDLNL---------PAVLLGSKDKVSSSGLISRSSKIVSF--HDLIELSGS-VTDIPDVSVKQTDAA  165 (424)
Q Consensus       101 i~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~  165 (424)
                      +++.+..   ..+.....         ..+........        .......  .+....... ..........+++++
T Consensus       347 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a  418 (1389)
T TIGR03443       347 IVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSL--------VGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNP  418 (1389)
T ss_pred             EEeccccccchhhhhhhhcccccccccceEEecccccc--------cccccccccccccccccccccCCCCCcCCCCCce
Confidence            9876421   11111000         00000000000        0000000  000000000 001111234578999


Q ss_pred             EEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCH
Q 014435          166 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDI  242 (424)
Q Consensus       166 ~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~  242 (424)
                      +++|||||||.||||+++|+++...+..........  .+++++...|++|..++. .++.+|..|+++++++.   .++
T Consensus       419 ~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~~~~~~~~~d~~~~-~i~~~L~~G~~l~~~~~~~~~~~  495 (1389)
T TIGR03443       419 TLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLS--ENDKFTMLSGIAHDPIQR-DMFTPLFLGAQLLVPTADDIGTP  495 (1389)
T ss_pred             EEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCC--CCCEEEEecCceecchHH-HHHHHHhCCCEEEEcChhhccCH
Confidence            999999999999999999999998876665554443  348999999999988874 78899999999999864   368


Q ss_pred             HHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCcee
Q 014435          243 EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS  322 (424)
Q Consensus       243 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  322 (424)
                      ..+.+.++++++|++.++|++++.|....   ...++++|.+++||+++++...+++.+.++++++++.||+||++..++
T Consensus       496 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  572 (1389)
T TIGR03443       496 GRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVS  572 (1389)
T ss_pred             HHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEE
Confidence            89999999999999999999999887543   235789999999999999999999998888899999999999887665


Q ss_pred             ecCCCCC---------ccCCCccccccCCcEEEEeeCCC-CccCCCCCceeEEEecCCcchhhh----------------
Q 014435          323 LENPLVG---------VRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGEIWVRGPNVTPVFE----------------  376 (424)
Q Consensus       323 ~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gel~v~~~~~~~gy~----------------  376 (424)
                      .......         .....++|+|+++++++|+|+++ +++++.|+.|||+|+|+.++.||-                
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~  652 (1389)
T TIGR03443       573 YFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFV  652 (1389)
T ss_pred             EEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCccc
Confidence            4322110         11345789999999999999543 688999999999999999999991                


Q ss_pred             -------------------------hccccCceEEEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          377 -------------------------LTVNCNLFSYFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       377 -------------------------~~~~TgD~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                                               +||+|||+|++++||.+      |  |+++|++|+|.|||++|.+||.|.+|+|+
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~  732 (1389)
T TIGR03443       653 DPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTL  732 (1389)
T ss_pred             CcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEE
Confidence                                     48999999999999987      3  99999999999999999999999999886

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-53  Score=381.41  Aligned_cols=395  Identities=23%  Similarity=0.296  Sum_probs=324.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCCCCE-EEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           24 DPSFSMFKSIVIKVSHSFRHLGITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~~gi~~g~~-V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      .+||.|+..++.++|+.|.+.|++++++ ++|+++.+.+|+.+++||++.+..+|.+...+..+.+.+.|++++++.|+|
T Consensus        89 w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T  168 (678)
T KOG1180|consen   89 WMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFT  168 (678)
T ss_pred             eecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEe
Confidence            3599999999999999999999997765 999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCC-----CeEEEecC-CCcccccc----ccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435          103 VPELWDKVKDLNL-----PAVLLGSK-DKVSSSGL----ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus       103 ~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +.+.+..+.....     +.++.... +.......    ......+.+|++++..+.+.. .++.++.++|+|+||||||
T Consensus       169 ~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSG  247 (678)
T KOG1180|consen  169 DSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSG  247 (678)
T ss_pred             CHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCC
Confidence            9998886655422     22222221 11111111    123467889999999888643 4445558899999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCH--------HH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDI--------EM  244 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~--------~~  244 (424)
                      |||.||||+++|+|+++.+........ .-.+.|+++.++|+.|++.+. .-+.+++.|+.+-..++.+.        ..
T Consensus       248 STG~PKGVml~H~NiVA~~~G~~~~v~-~lg~~D~yi~yLPLAHIlEl~-aE~~~ft~G~~iGY~S~~TLtdts~ki~kg  325 (678)
T KOG1180|consen  248 STGLPKGVMLTHSNIVAGVTGVGENVP-ELGPKDRYIAYLPLAHILELT-AELVCFTWGGRIGYSSPLTLTDTSSKIKKG  325 (678)
T ss_pred             CCCCCceEEEecccHHhhhhhhcccCc-ccCCCceEEEechHHHHHHHH-HHHHHHhhCCEeecCCcceecccchhhccC
Confidence            999999999999999999888776664 344569999999999999996 55788999999887654221        22


Q ss_pred             HHHHHHHccceEEEechHHHHHHHhccc------------------------------------------cccCCCCCee
Q 014435          245 ALRAIEKYRVTVWWVVPPIILALAKNSL------------------------------------------VRKFDISSLK  282 (424)
Q Consensus       245 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------------------------------------~~~~~~~~lr  282 (424)
                      .-..+...+||.+.++|.+++++.+.-.                                          .+...-.+||
T Consensus       326 ~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR  405 (678)
T KOG1180|consen  326 CKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLR  405 (678)
T ss_pred             CcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceE
Confidence            2334567899999999999988754200                                          0000114899


Q ss_pred             EEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCC--
Q 014435          283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--  360 (424)
Q Consensus       283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--  360 (424)
                      ++++||+|++++..+.+.-.+ .+++.++||.||+++..+...+.  +...+.+|.|++-++++++|-+++...+.+.  
T Consensus       406 ~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~--d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PP  482 (678)
T KOG1180|consen  406 YILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPE--DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPP  482 (678)
T ss_pred             EEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChh--hcccccccCCccceEEEEEEhhhcCccCCCCCC
Confidence            999999999999999988887 57999999999999888877776  6778899999999999999987776665555  


Q ss_pred             ceeEEEecCCcchhh--------------hh--ccccCceEEEecCCce---e-----eEe-eeeeeChhhHHHHHhcCC
Q 014435          361 LGEIWVRGPNVTPVF--------------EL--TVNCNLFSYFRSNDHN---D-----FFC-KLFQVAPAELEGLLVSHP  415 (424)
Q Consensus       361 ~Gel~v~~~~~~~gy--------------~~--~~~TgD~g~~~~~g~~---d-----i~~-~G~~v~~~~iE~~l~~~p  415 (424)
                      .|||+++|+++..||              ++  ||+|||+|++++||.+   |     ++. +|+.|+++-||.+++..|
T Consensus       483 rGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p  562 (678)
T KOG1180|consen  483 RGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSP  562 (678)
T ss_pred             CceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCc
Confidence            899999999999999              56  9999999999999998   3     554 999999999999999999


Q ss_pred             CcccceecC
Q 014435          416 EILDAVVIP  424 (424)
Q Consensus       416 ~V~~a~v~g  424 (424)
                      -|...||++
T Consensus       563 ~V~NICvyA  571 (678)
T KOG1180|consen  563 YVDNICVYA  571 (678)
T ss_pred             chhheEEec
Confidence            999999875

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.6e-52  Score=404.70  Aligned_cols=383  Identities=22%  Similarity=0.292  Sum_probs=299.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+++.++++++.++++++++++++
T Consensus        22 ~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i  101 (501)
T PRK13390         22 GEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLV  101 (501)
T ss_pred             CeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCCe-EEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          102 TVPELWDKVKDLNLPA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++............. ..+....         .......+++......     + .....++.++++|||||||.||+|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~-~~~~~~~~a~i~~TSGTTG~PKgV  166 (501)
T PRK13390        102 ASAALDGLAAKVGADLPLRLSFGG---------EIDGFGSFEAALAGAG-----P-RLTEQPCGAVMLYSSGTTGFPKGI  166 (501)
T ss_pred             EcchhhhHHHHhhhccceEEEecC---------cccccccHHHHhcccC-----C-CCCCCcccEEEEeCCCCCCCCCEE
Confidence            9876543322221110 1111000         0011122332222111     0 011223579999999999999999


Q ss_pred             hh--cHHHHHHHHHHHH--hhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          181 IL--THKNFIAASLMIS--AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       181 ~~--t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      .+  +|.++........  .........+++++..+|++|.+++.. ....+..|+++++.+.+++..+++.|+++++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~  245 (501)
T PRK13390        167 QPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAKRFDAQATLGHVERYRITV  245 (501)
T ss_pred             EeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeE
Confidence            95  4544433211000  111122234589999999999998753 344567899999988899999999999999999


Q ss_pred             EEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCC
Q 014435          257 WWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG  334 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  334 (424)
                      +.++|+++..+......  ...+++++|.++.||+++++++.+.+.+.+ +..+++.||+||+++++...... .....+
T Consensus       246 ~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~  323 (501)
T PRK13390        246 TQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDSPD-WLAHPG  323 (501)
T ss_pred             EEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecchh-hccCCC
Confidence            99999999998865432  334578999999999999999999999987 58999999999998755443322 123567


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh---------------hhccccCceEEEecCCce------
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---------------ELTVNCNLFSYFRSNDHN------  393 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy---------------~~~~~TgD~g~~~~~g~~------  393 (424)
                      ++|+|.++ +++|+| +++++++.|+.|||+++|+.++.||               ++|++|||+|+++++|.+      
T Consensus       324 ~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~  401 (501)
T PRK13390        324 SVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRK  401 (501)
T ss_pred             CcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeecc
Confidence            89999999 799999 6899999999999999999999999               248999999999999987      


Q ss_pred             e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |  ++.+|++|+|.+||++|.+||.|.+++|+|
T Consensus       402 ~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~  434 (501)
T PRK13390        402 SFMIISGGVNIYPQETENALTMHPAVHDVAVIG  434 (501)
T ss_pred             ccceeECCeeeCHHHHHHHHHhCCCeeEEEEEe
Confidence            3  899999999999999999999999999875

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.5e-52  Score=479.86  Aligned_cols=386  Identities=22%  Similarity=0.283  Sum_probs=319.5

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      +++.++. .++.+||+||.++++++|++|.++|+++|++|++++++++++++++|||+++|++++|++|.++.+++.+++
T Consensus      1588 p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il 1667 (3956)
T PRK12467       1588 PEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMI 1667 (3956)
T ss_pred             CCCeEEEeCCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHH
Confidence            4444544 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCC-CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      +.+++++++++++....+..... ..+.+...                  .+++....  ...+.....++++++++|||
T Consensus      1668 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~~~~~~~~~~ayiiyTS 1727 (3956)
T PRK12467       1668 EDSGIELLLTQSHLQARLPLPDGLRSLVLDQE------------------DDWLEGYS--DSNPAVNLAPQNLAYVIYTS 1727 (3956)
T ss_pred             HhCCCCEEEeChhhhhhCccccCCcEEEeccc------------------cchhccCC--CCCCCCCCCCcCcEEEEECC
Confidence            99999999998776544322111 11111100                  00111111  11222345678999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRA  248 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~  248 (424)
                      ||||.||||+++|+++.+.+..........  .+++++...|++|..+++ .++.+|..|+++++.+.   .++..+++.
T Consensus      1728 GSTG~PKGV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lvi~~~~~~~~~~~l~~~ 1804 (3956)
T PRK12467       1728 GSTGRPKGAGNRHGALVNRLCATQEAYQLS--AADVVLQFTSFAFDVSVW-ELFWPLINGARLVIAPPGAHRDPEQLIQL 1804 (3956)
T ss_pred             CcCCCCCEEEEcCHHHHHHHHHHHHhcCCC--cccEEEEecCccHHHHHH-HHHHHHhCCCEEEEcChhhcCCHHHHHHH
Confidence            999999999999999998877665555443  348999999999999985 78899999999999864   578999999


Q ss_pred             HHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC-
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL-  327 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~-  327 (424)
                      ++++++|++.++|+++..|.+... ....++++|.+++||+++++++.++|.+.+++.+++|.||+||++..++..... 
T Consensus      1805 i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~ 1883 (3956)
T PRK12467       1805 IERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRR 1883 (3956)
T ss_pred             HHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccc
Confidence            999999999999999999987532 233578999999999999999999999988888999999999988666543322 


Q ss_pred             --CCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------------------hhccccCceE
Q 014435          328 --VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------------------ELTVNCNLFS  385 (424)
Q Consensus       328 --~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------------------~~~~~TgD~g  385 (424)
                        .......++|+|+++++++|+| ++++++|.|..|||+++|+.++.||                    ..||+|||+|
T Consensus      1884 ~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~ 1962 (3956)
T PRK12467       1884 KDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLA 1962 (3956)
T ss_pred             cccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceE
Confidence              1122356899999999999999 7899999999999999999999999                    1379999999


Q ss_pred             EEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          386 YFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       386 ~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++++||.+      |  +|++|++|+|.|||++|.+||+|++|+|++
T Consensus      1963 ~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~ 2009 (3956)
T PRK12467       1963 RYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIA 2009 (3956)
T ss_pred             EECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEE
Confidence            99999987      4  999999999999999999999999999974

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-52  Score=412.83  Aligned_cols=396  Identities=20%  Similarity=0.255  Sum_probs=306.0

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      +++.++. ..+.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++..++
T Consensus        51 p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l  130 (600)
T PRK08279         51 PDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSL  130 (600)
T ss_pred             CCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHH
Confidence            3444443 346799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEE
Q 014435           93 KDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL  167 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  167 (424)
                      +.++++++|++++....+.....     ..++.......      .....+..+.+..................++++++
T Consensus       131 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  204 (600)
T PRK08279        131 NLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTL------DDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFY  204 (600)
T ss_pred             HhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccc------cccccHHHHhhhcccCCccCCCcccCCCccccEEE
Confidence            99999999999877665544321     11122111000      00111112222111111100112233457899999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR  247 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  247 (424)
                      +|||||||.||+|.++|.++...+..........  .+++++..+|++|.+|+...++.++..|+++++.+.+++..+++
T Consensus       205 l~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~--~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~  282 (600)
T PRK08279        205 IYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLT--PDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWD  282 (600)
T ss_pred             EEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCC--CCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHH
Confidence            9999999999999999999998887766554443  34999999999999999877788899999999999999999999


Q ss_pred             HHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC
Q 014435          248 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL  327 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~  327 (424)
                      .++++++|++.++|+++..+.+..........++|.+  +|+.++++++++|.+.++...+++.||+||++..... .  
T Consensus       283 ~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~--  357 (600)
T PRK08279        283 DVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN-V--  357 (600)
T ss_pred             HHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc-c--
Confidence            9999999999999999999887655444445677764  4777999999999999975679999999998753322 1  


Q ss_pred             CCccCCCccccccC----CcEE---------EEeeCC-CCccCCCCCceeEE--EecCCcchhh----------------
Q 014435          328 VGVRRSGSAGTLVA----GVEA---------QIVSVD-TLKPLPPNQLGEIW--VRGPNVTPVF----------------  375 (424)
Q Consensus       328 ~~~~~~~~~G~~~~----~~~~---------~i~d~~-~~~~~~~g~~Gel~--v~~~~~~~gy----------------  375 (424)
                        ....+++|.+.+    +..+         .+.+.+ ....++.|+.||++  +.++.++.||                
T Consensus       358 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY~~~~~t~~~~~~~~~~  435 (600)
T PRK08279        358 --FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGYTDPEASEKKILRDVFK  435 (600)
T ss_pred             --CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccccccCCchhhHHHHhhcccC
Confidence              234456776555    3322         222311 12357889999998  7788899998                


Q ss_pred             --hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          376 --ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 --~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                        ++||+|||+|+++++|.+       | ++++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       436 ~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~g  494 (600)
T PRK08279        436 KGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYG  494 (600)
T ss_pred             CCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEE
Confidence              258999999999999987       3 999999999999999999999999999975

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.4e-52  Score=408.99  Aligned_cols=397  Identities=22%  Similarity=0.314  Sum_probs=312.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ++.+||+||.+++.++|++|++ .|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++
T Consensus        36 ~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~  115 (576)
T PRK05620         36 QEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVI  115 (576)
T ss_pred             eEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEE
Confidence            4679999999999999999986 799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC-----CCeEEEecCCCccc-cccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCC
Q 014435          101 ITVPELWDKVKDLN-----LPAVLLGSKDKVSS-SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT  174 (424)
Q Consensus       101 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  174 (424)
                      |++++....+....     .+.++......... ...........++++++....  ...+.....++++++++||||||
T Consensus       116 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~i~~TSGTT  193 (576)
T PRK05620        116 VADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRS--TVYDWPELDETTAAAICYSTGTT  193 (576)
T ss_pred             EEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcCC--CcCCCCCCCccceeEEEECCCCC
Confidence            99987666543321     12222221111100 000011223445666665322  22222345678999999999999


Q ss_pred             CCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CCCHHHHHHHHHHcc
Q 014435          175 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYR  253 (424)
Q Consensus       175 G~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~  253 (424)
                      |.||+|.++|+++............+.....+++++.+|++|.+++. ..+.++..|+++++.. .+++..+++.+++++
T Consensus       194 G~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~  272 (576)
T PRK05620        194 GAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWG-VPLAAFMSGTPLVFPGPDLSAPTLAKIIATAM  272 (576)
T ss_pred             CCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhH-HHHHHHhcCceEEecCCCCCHHHHHHHHHHhc
Confidence            99999999999986554432222122233458999999999999985 6678899999998875 479999999999999


Q ss_pred             ceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC----
Q 014435          254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG----  329 (424)
Q Consensus       254 ~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----  329 (424)
                      +|+++++|+++..++.+.........++|.+++||+++++.+.++|.+.+ ++++++.||+||++..+....+...    
T Consensus       273 ~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  351 (576)
T PRK05620        273 PRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVSGE  351 (576)
T ss_pred             CceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccccc
Confidence            99999999999988765433333446899999999999999999999988 6899999999999876554332210    


Q ss_pred             --ccCCCccccccCCcEEEEeeCCCCccC--CCCCceeEEEecCCcchhh-----------------------------h
Q 014435          330 --VRRSGSAGTLVAGVEAQIVSVDTLKPL--PPNQLGEIWVRGPNVTPVF-----------------------------E  376 (424)
Q Consensus       330 --~~~~~~~G~~~~~~~~~i~d~~~~~~~--~~g~~Gel~v~~~~~~~gy-----------------------------~  376 (424)
                        .....++|++.++++++++| + ++.+  ++++.|||+++|++++.||                             +
T Consensus       352 ~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~  429 (576)
T PRK05620        352 ARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTAD  429 (576)
T ss_pred             cccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccC
Confidence              01234789999999999999 4 6655  3578999999999999888                             1


Q ss_pred             hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          377 LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       377 ~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +||+|||++++++||.+       | ++.+|++|+|.+||++|.+||.|.+|+|+|
T Consensus       430 g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~  485 (576)
T PRK05620        430 GWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIG  485 (576)
T ss_pred             CcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEe
Confidence            48999999999999977       3 889999999999999999999999999985

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.6e-51  Score=404.67  Aligned_cols=406  Identities=23%  Similarity=0.384  Sum_probs=315.8

Q ss_pred             CCCCCC-CCCCCcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           15 LRPPLV-LPSDPSFSMFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        15 ~~~~~~-~~~~~Ty~el~~~~~~~a~~L~-~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ...++. ..+++||+||.+++.++|+.|+ +.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++..++
T Consensus        40 ~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l  119 (560)
T PRK08751         40 DRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQL  119 (560)
T ss_pred             CCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHH
Confidence            344433 4567999999999999999997 68999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCC----CCeEEEecCCC-cc--cc-------------ccccCCCcccchhhhhhccCCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDK-VS--SS-------------GLISRSSKIVSFHDLIELSGSVT  152 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~~~~-~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~  152 (424)
                      ++++++++++++.....+....    ...++...... ..  ..             ...........+.+....... .
T Consensus       120 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  198 (560)
T PRK08751        120 IDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRK-H  198 (560)
T ss_pred             HhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCCccccHHHHHhccCC-C
Confidence            9999999999887655443321    11222111000 00  00             000000111223333222111 1


Q ss_pred             CCCCCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhh---ccCCCcEEEEecchHHHHHHHHHHHHHhh
Q 014435          153 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL---VGELDHVVLCVLPMFHVFGLSVILYDQLQ  229 (424)
Q Consensus       153 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  229 (424)
                      ..+.....++++++++|||||||.||+|.++|.++.............   ....++.+++..|++|.+++....+..+.
T Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (560)
T PRK08751        199 SMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMK  278 (560)
T ss_pred             CCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhh
Confidence            122234567899999999999999999999999988766554333321   11223677888999999998655566666


Q ss_pred             cCceEEec-CCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeE
Q 014435          230 KGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  308 (424)
Q Consensus       230 ~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~  308 (424)
                      .|++.++. ..+++..+++.++++++|++.++|.++..+.+.......+++++|.+++||+++++++.+.|++.+ ++.+
T Consensus       279 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~  357 (560)
T PRK08751        279 IGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTL  357 (560)
T ss_pred             ccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHh-CCeE
Confidence            66665544 457899999999999999999999999999887655556688999999999999999999999987 6899


Q ss_pred             EecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------
Q 014435          309 FQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------  375 (424)
Q Consensus       309 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------  375 (424)
                      ++.||+||+++.++..... .....+++|.|.++++++++| ++++.++.|+.|||+++|+.++.||             
T Consensus       358 ~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  435 (560)
T PRK08751        358 VEAYGLTETSPAACINPLT-LKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDA  435 (560)
T ss_pred             EEeeccccCCCceeccccc-ccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhcccc
Confidence            9999999988765543321 234457899999999999999 6889999999999999999999999             


Q ss_pred             hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          376 ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 ~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++||+|||+|+++++|.+       | ++.+|++|+|.+||++|.++|+|.+|+|+|
T Consensus       436 ~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~  492 (560)
T PRK08751        436 DGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVG  492 (560)
T ss_pred             CCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEe
Confidence            479999999999999877       3 899999999999999999999999999875

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=4.3e-51  Score=401.35  Aligned_cols=399  Identities=30%  Similarity=0.487  Sum_probs=314.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|++|..+.+++.++++.+++++++
T Consensus        44 ~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi  123 (541)
T TIGR03205        44 DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLI  123 (541)
T ss_pred             CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecccc--hHHHhcC----CCCeEEEecCCCccccc----cccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435          102 TVPEL--WDKVKDL----NLPAVLLGSKDKVSSSG----LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus       102 ~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      +++..  .......    ....+++..........    .........++++++....  .........++++++++|||
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TS  201 (541)
T TIGR03205       124 TSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAA--APAEWPAVTPDDVALLQYTG  201 (541)
T ss_pred             EeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHhcCC--CCCCCCCCCccCeEEEEECC
Confidence            98631  1111110    01112222111100000    0011122334555543222  11112234578999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhh---hhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQ---ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA  248 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  248 (424)
                      ||||.||+|.++|+++...........   .......+++++..|++|.+++...++.++..|+++++...+++..+++.
T Consensus       202 GTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~  281 (541)
T TIGR03205       202 GTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD  281 (541)
T ss_pred             CCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH
Confidence            999999999999999876543221110   11112237899999999999987778889999999999888899999999


Q ss_pred             HHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      |+++++|++.++|+++..+.+........++++|.+++||+++++++.+++.+.+ +.++++.||+||++..+.......
T Consensus       282 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~  360 (541)
T TIGR03205       282 IEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEG  360 (541)
T ss_pred             HHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCC
Confidence            9999999999999999999876544455678999999999999999999998877 689999999999887665433221


Q ss_pred             CccCCCccccccCCcEEEEee-CCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce--
Q 014435          329 GVRRSGSAGTLVAGVEAQIVS-VDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~--  393 (424)
                       ....+++|.|++++.++|.+ .++++.++.|+.|||+++|+.++.||            ++||+|||+++++++|.+  
T Consensus       361 -~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i  439 (541)
T TIGR03205       361 -PDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFL  439 (541)
T ss_pred             -CCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEE
Confidence             23457899999999988864 25688999999999999999999998            468999999999999877  


Q ss_pred             -----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           | ++.+|++|+|.+||+.+.+||.|.+++|+|
T Consensus       440 ~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~  476 (541)
T TIGR03205       440 VDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIG  476 (541)
T ss_pred             EccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence                 3 899999999999999999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-51  Score=403.53  Aligned_cols=394  Identities=23%  Similarity=0.319  Sum_probs=310.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.+++++++
T Consensus        37 ~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~  116 (542)
T PRK06018         37 IVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVI  116 (542)
T ss_pred             ceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++.+....+.+..     ...++...+.....   .........+.+++....  .........++++++++|||||||.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~  191 (542)
T PRK06018        117 TDLTFVPILEKIADKLPSVERYVVLTDAAHMP---QTTLKNAVAYEEWIAEAD--GDFAWKTFDENTAAGMCYTSGTTGD  191 (542)
T ss_pred             EccccHHHHHHHHhhCCCccEEEEeccccccc---ccCccccccHHHHhccCC--cccCcccCCccceeeEEecCCCCCC
Confidence            9987766554321     11222211110000   011112334454443322  1111233456789999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC-CCCHHHHHHHHHHccce
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVT  255 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t  255 (424)
                      ||+|.++|++..................+++++...|++|.+++. ..+.++..|+++++.. .+++..+++.++++++|
T Consensus       192 PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t  270 (542)
T PRK06018        192 PKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWG-IAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVT  270 (542)
T ss_pred             CcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhH-HHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCc
Confidence            999999999743221111111112223448999999999999885 4567788999998874 57889999999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC------
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG------  329 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~------  329 (424)
                      ++.++|+++..+.+.......+++++|.++++|+++++++.++|++ + +.++++.||+||++.+++.......      
T Consensus       271 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  348 (542)
T PRK06018        271 FTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPG  348 (542)
T ss_pred             eeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccCCc
Confidence            9999999999998876555567889999999999999999999999 6 7999999999998876544221100      


Q ss_pred             ---ccCCCccccccCCcEEEEeeCCCCccCCCC--CceeEEEecCCcchhh----------hhccccCceEEEecCCce-
Q 014435          330 ---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPVF----------ELTVNCNLFSYFRSNDHN-  393 (424)
Q Consensus       330 ---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy----------~~~~~TgD~g~~~~~g~~-  393 (424)
                         .....++|+|.++++++|+| ++++.++.+  ..|||+++|+.++.||          ++||+|||+++++++|.+ 
T Consensus       349 ~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~~TGDl~~~~~~g~~~  427 (542)
T PRK06018        349 DARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGDVATIDAYGYMR  427 (542)
T ss_pred             hhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCcccEecCCcEEEcCCEEEEcCCccEE
Confidence               01235789999999999999 578877653  6899999999999999          579999999999999877 


Q ss_pred             ------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            | ++.+|++|+|.+||..+.+||.|.+|+|+|
T Consensus       428 ~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~  465 (542)
T PRK06018        428 ITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIG  465 (542)
T ss_pred             EEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEe
Confidence                  3 889999999999999999999999999985

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.1e-52  Score=485.49  Aligned_cols=386  Identities=20%  Similarity=0.263  Sum_probs=318.5

Q ss_pred             cCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLVL-PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++.. .+++||+||.++++++|+.|.++|+++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++
T Consensus      2017 p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il 2096 (5163)
T PRK12316       2017 PEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYML 2096 (5163)
T ss_pred             CCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHH
Confidence            45555543 45699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +++++++++++++....+........+ ....                ... .....  ...+.....++++++|+||||
T Consensus      2097 ~~~~~~~vl~~~~~~~~~~~~~~~~~~-~~~~----------------~~~-~~~~~--~~~~~~~~~~~~~a~ii~TSG 2156 (5163)
T PRK12316       2097 EDSGAALLLTQRHLLERLPLPAGVARL-PLDR----------------DAE-WADYP--DTAPAVQLAGENLAYVIYTSG 2156 (5163)
T ss_pred             HhcCCCEEEeChhhhhhcccccccceE-eccc----------------hhh-hhccC--ccCCCCCCCCCCeEEEEeCcc
Confidence            999999999988765443221110000 0000                000 00000  112233457899999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC--CCHHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--FDIEMALRAIE  250 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~  250 (424)
                      |||.||||+++|+++.+.+..........  .+++++.+.|++|..++. .++.+|..|+++++.+.  +++..+.+.++
T Consensus      2157 STG~PKgV~~~h~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~ 2233 (5163)
T PRK12316       2157 STGLPKGVAVSHGALVAHCQAAGERYELS--PADCELQFMSFSFDGAHE-QWFHPLLNGARVLIRDDELWDPEQLYDEME 2233 (5163)
T ss_pred             CCCCCCEeEEccHHHHHHHHHHHHhcCCC--CcceEEEecCchHHHHHH-HHHHHHhCCCEEEeCCcccCCHHHHHHHHH
Confidence            99999999999999998877766655543  349999999999988874 78999999999988763  68999999999


Q ss_pred             HccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCc
Q 014435          251 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV  330 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  330 (424)
                      ++++|++.++|+++..+.+...... ...+||.+++||+++++++.++|.+.+++.++++.||+||++..++........
T Consensus      2234 ~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 2312 (5163)
T PRK12316       2234 RHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQD 2312 (5163)
T ss_pred             HcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeeccccc
Confidence            9999999999999999987654332 345899999999999999999999988889999999999988665543322111


Q ss_pred             ---cCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------------------hhccccCceEEE
Q 014435          331 ---RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------------------ELTVNCNLFSYF  387 (424)
Q Consensus       331 ---~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------------------~~~~~TgD~g~~  387 (424)
                         ....++|+|+++++++|+| ++++++|.|++|||+|+|+.++.||                    ++||+|||+|++
T Consensus      2313 ~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~ 2391 (5163)
T PRK12316       2313 PCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARY 2391 (5163)
T ss_pred             ccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEE
Confidence               1235799999999999999 6889999999999999999999999                    138999999999


Q ss_pred             ecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++||.+      |  ||++|++|+|.|||.+|.+||+|++|+|++
T Consensus      2392 ~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~ 2436 (5163)
T PRK12316       2392 RADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVA 2436 (5163)
T ss_pred             cCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEE
Confidence            999987      3  999999999999999999999999999874

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2.4e-51  Score=404.75  Aligned_cols=397  Identities=19%  Similarity=0.274  Sum_probs=302.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.+++++++
T Consensus        43 ~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii  122 (567)
T PLN02479         43 SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVM  122 (567)
T ss_pred             CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcC------------CCCeEEEecCCCccc-cccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEe
Q 014435          102 TVPELWDKVKDL------------NLPAVLLGSKDKVSS-SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  168 (424)
Q Consensus       102 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  168 (424)
                      +++++.+.....            ....++......... ............+.+++..... ..........+++++++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~  201 (567)
T PLN02479        123 VDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDP-EFAWKPPADEWQSIALG  201 (567)
T ss_pred             EchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHHhcccc-ccccCCCCCcccceEEE
Confidence            998765433221            111222221110000 0000011223345555443221 11111122345678899


Q ss_pred             cCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHH
Q 014435          169 YSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA  248 (424)
Q Consensus       169 ~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  248 (424)
                      |||||||.||+|.++|+++.............  ..++++++.+|++|.+++...+...+..|.++++ ..+++..+++.
T Consensus       202 yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~  278 (567)
T PLN02479        202 YTSGTTASPKGVVLHHRGAYLMALSNALIWGM--NEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICL-RQVTAKAIYSA  278 (567)
T ss_pred             ECCCCCCCCcEEEeccHHHHHHHHHHHhhcCC--CCCCEEEEecchhhhhhHHHHHHHHhhcCceEec-cCCCHHHHHHH
Confidence            99999999999999999986654433333332  3458999999999999986555556677766654 56899999999


Q ss_pred             HHHccceEEEechHHHHHHHhcccccc-CCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecC--
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRK-FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN--  325 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~--  325 (424)
                      ++++++|++.++|.++..|.+...... ..++++|.++++|+++++.+.++|.+.  +.++++.||+||+++.+....  
T Consensus       279 l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~  356 (567)
T PLN02479        279 IANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWK  356 (567)
T ss_pred             HHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceecc
Confidence            999999999999999999987654333 257899999999999999999999875  689999999999865433211  


Q ss_pred             C-------CCCccCCCccccccCCcE-EEEeeCCCCccCCCC--CceeEEEecCCcchhh------------hhccccCc
Q 014435          326 P-------LVGVRRSGSAGTLVAGVE-AQIVSVDTLKPLPPN--QLGEIWVRGPNVTPVF------------ELTVNCNL  383 (424)
Q Consensus       326 ~-------~~~~~~~~~~G~~~~~~~-~~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy------------~~~~~TgD  383 (424)
                      +       ........+.|.+.++.. ++|+|++++++++.+  +.|||+++|+.++.||            ++||+|||
T Consensus       357 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGD  436 (567)
T PLN02479        357 PEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGD  436 (567)
T ss_pred             ccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecce
Confidence            0       000111235677788875 889987678888754  6899999999999999            57999999


Q ss_pred             eEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          384 FSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       384 ~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|+++++|++       | ++.+|++|+|.+||++|.+||.|.+|+|+|
T Consensus       437 l~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~  485 (567)
T PLN02479        437 LGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVA  485 (567)
T ss_pred             eEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEe
Confidence            9999999977       3 889999999999999999999999999985

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3e-51  Score=399.74  Aligned_cols=393  Identities=22%  Similarity=0.300  Sum_probs=308.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++..+++.++++++
T Consensus         8 ~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i   87 (509)
T PRK12406          8 GDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVL   87 (509)
T ss_pred             CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCC-CeEEEecCCCcccc-------ccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435          101 ITVPELWDKVKDLNL-PAVLLGSKDKVSSS-------GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus       101 i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +++.+....+..... ....+.........       ...........+++......     +......+++++++||||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         88 IAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-----PYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             EEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccC-----ccCCCCCCCceEEEECCC
Confidence            998876665433211 11111000000000       00001112233444432211     112335689999999999


Q ss_pred             CCCCcchhhhcHHHH---HHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNF---IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  249 (424)
                      |||.||+|.++|...   .............  ..+++++...|++|..+.. ..+.++..|+++++.+.+++..+++.+
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~l  239 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGL--KPGIRALLTGPLYHSAPNA-YGLRAGRLGGVLVLQPRFDPEELLQLI  239 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhcCC--CCCceEEEEeCCcccchHH-HHHHHHhhheEEEEccCCCHHHHHHHH
Confidence            999999998866543   3322222222223  3448999999999988875 445567889999988888999999999


Q ss_pred             HHccceEEEechHHHHHHHhccc--cccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL  327 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~  327 (424)
                      +++++|++.++|+++..|+....  ....+++++|.++.||+++++++.+++.+.+ +..+++.||+||++.++.... .
T Consensus       240 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~  317 (509)
T PRK12406        240 ERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATS-E  317 (509)
T ss_pred             HHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCc-c
Confidence            99999999999999999987543  2334678999999999999999999999988 589999999999987554432 2


Q ss_pred             CCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcch-hh------------hhccccCceEEEecCCce-
Q 014435          328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP-VF------------ELTVNCNLFSYFRSNDHN-  393 (424)
Q Consensus       328 ~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~-gy------------~~~~~TgD~g~~~~~g~~-  393 (424)
                      .....++++|+|.++++++++| +++++++.|+.|||+++++.+.. +|            ++||+|||+++++++|.+ 
T Consensus       318 ~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~  396 (509)
T PRK12406        318 DALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLF  396 (509)
T ss_pred             cccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEE
Confidence            2234567899999999999999 67899999999999999998764 66            679999999999999876 


Q ss_pred             ------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            | ++++|++|+|.+||+.|.++|.|.+|+|+|
T Consensus       397 ~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~  434 (509)
T PRK12406        397 LCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFG  434 (509)
T ss_pred             EeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence                  3 899999999999999999999999999874

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.9e-50  Score=397.14  Aligned_cols=400  Identities=27%  Similarity=0.416  Sum_probs=313.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL   99 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~   99 (424)
                      ..+.+||.||.++++++|.+|.+ .|+++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++
T Consensus        45 ~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~  124 (560)
T PRK08974         45 MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKA  124 (560)
T ss_pred             CCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceE
Confidence            35679999999999999999984 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccchHHHhcCC----CCeEEEecCCCccccccc--------------c--CCCcccchhhhhhccCCCCCCCCCCC
Q 014435          100 VITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLI--------------S--RSSKIVSFHDLIELSGSVTDIPDVSV  159 (424)
Q Consensus       100 ii~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (424)
                      ++++++..+.+..+.    ...+..............              .  ......++.+....... ........
T Consensus       125 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  203 (560)
T PRK08974        125 IVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRR-MQYVKPEL  203 (560)
T ss_pred             EEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccCCCcccHHHHhhccCC-CCCCCCCC
Confidence            999876655443321    111111100000000000              0  00011111222211110 11112234


Q ss_pred             CCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhh-hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEec-
Q 014435          160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-  237 (424)
Q Consensus       160 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-  237 (424)
                      .++++++++|||||||.||+|.++|.++............ .....++.++..+|++|.+++....+..+..|+++++. 
T Consensus       204 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~  283 (560)
T PRK08974        204 VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLIT  283 (560)
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEec
Confidence            6789999999999999999999999999876543322221 12333478889999999999876677778888886665 


Q ss_pred             CCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccC
Q 014435          238 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET  317 (424)
Q Consensus       238 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~  317 (424)
                      +..++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+++++.+.++|++.+ +..+++.||+||+
T Consensus       284 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~  362 (560)
T PRK08974        284 NPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTEC  362 (560)
T ss_pred             CccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeeccccc
Confidence            356889999999999999999999999999887655556678999999999999999999999987 6999999999998


Q ss_pred             CCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceE
Q 014435          318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFS  385 (424)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g  385 (424)
                      +..+...... .....+++|.|.++++++|+| ++++.++.|+.|||+++|+.++.+|            ++||+|||++
T Consensus       363 ~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        363 SPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             CceeeccCCC-CcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            8766554332 234467899999999999999 5789999999999999999999998            4789999999


Q ss_pred             EEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          386 YFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       386 ~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +++++|.+       | ++++|++++|.+||++|.+||.|.+++|+|
T Consensus       441 ~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~  487 (560)
T PRK08974        441 VMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVG  487 (560)
T ss_pred             EEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            99998876       3 888999999999999999999999999874

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=6.4e-52  Score=394.73  Aligned_cols=359  Identities=32%  Similarity=0.464  Sum_probs=281.3

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeE
Q 014435           20 VLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL   99 (424)
Q Consensus        20 ~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~   99 (424)
                      ..++++||+||.++++++|..|++.|+++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++
T Consensus        17 ~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~   96 (417)
T PF00501_consen   17 DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKV   96 (417)
T ss_dssp             TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESE
T ss_pred             CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccccccccccccccccceeE
Confidence            36677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEE----cccchHHHhcCC----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCC-CCCCCEEEEecC
Q 014435          100 VIT----VPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS-VKQTDAAALLYS  170 (424)
Q Consensus       100 ii~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~T  170 (424)
                      +++    ++.....+....    ........+..           .....+.+...... .... .. ..++++++++||
T Consensus        97 ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~i~~T  163 (417)
T PF00501_consen   97 IITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRD-----------DLPKKEALKSASLS-DEPQ-SPEDSPDDPAFILFT  163 (417)
T ss_dssp             EEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHS-----------SCTTCHHHHHHHHC-HCSH-STTHTTTSEEEEEEE
T ss_pred             EEEeccccccccccchhhhccccccccccccccc-----------cccccccccccccc-cccc-cCCCCccceeEeecc
Confidence            997    222222222111    11111111100           00000111110000 0000 00 056999999999


Q ss_pred             CCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCC---HHHHHH
Q 014435          171 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD---IEMALR  247 (424)
Q Consensus       171 SGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~  247 (424)
                      |||||.||+|.++|+++...+.... ........ +++++.+|++|.+|+...++.++..|+++++.+...   ++.+++
T Consensus       164 SGTTG~pK~v~~t~~~~~~~~~~~~-~~~~~~~~-d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~  241 (417)
T PF00501_consen  164 SGTTGKPKGVVLTHRNLLAQARALA-LPEYFGLG-DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLE  241 (417)
T ss_dssp             SSSSSSEEEEEEEHHHHHHHHHHHH-HHHTTTTT-TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccc-cccccccC-ceEEeeccccccccccccccccccccccccccccccccccccchh
Confidence            9999999999999999998877654 11111111 599999999999999678999999999999998754   477899


Q ss_pred             HHHHccceEEEechHHHHHHHhccccc----cCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceee
Q 014435          248 AIEKYRVTVWWVVPPIILALAKNSLVR----KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL  323 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~~~~~----~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~  323 (424)
                      .++++++|+++++|+++..+++.....    ..+++++|.++++|+++++++.+++++.++..++++.||+||+++++..
T Consensus       242 ~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  321 (417)
T PF00501_consen  242 LISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATI  321 (417)
T ss_dssp             HHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecccccccceeeec
Confidence            999999999999999999998843222    3468889999999999999999999999865599999999999988875


Q ss_pred             cCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------h-hccccCceEEEecC
Q 014435          324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------E-LTVNCNLFSYFRSN  390 (424)
Q Consensus       324 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~-~~~~TgD~g~~~~~  390 (424)
                      ..........+++|.|+++++++|+|+++++++++|+.|||+++|+.++.||            + +||+|||+|+++++
T Consensus       322 ~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~  401 (417)
T PF00501_consen  322 RPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDED  401 (417)
T ss_dssp             EETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEECCC
Confidence            5322223467789999999999999977799999999999999999999999            2 69999999999999


Q ss_pred             Cce
Q 014435          391 DHN  393 (424)
Q Consensus       391 g~~  393 (424)
                      |.+
T Consensus       402 G~~  404 (417)
T PF00501_consen  402 GYL  404 (417)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            987

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=8.4e-51  Score=431.37  Aligned_cols=382  Identities=20%  Similarity=0.288  Sum_probs=307.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++++|+|+..+.+++.++++++++++++
T Consensus       656 ~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi  734 (1140)
T PRK06814        656 NGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVL  734 (1140)
T ss_pred             CCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEE
Confidence            4679999999999999999976 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHh------cCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          102 TVPELWDKVK------DLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       102 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      ++++......      .......++..++..      ........+.+......  +..+.....++|+++++|||||||
T Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG  806 (1140)
T PRK06814        735 TSRAFIEKARLGPLIEALEFGIRIIYLEDVR------AQIGLADKIKGLLAGRF--PLVYFCNRDPDDPAVILFTSGSEG  806 (1140)
T ss_pred             ecHHHHhhhcchhHHHHhccCceEEEehHhh------ccCChHHHHHHHhhccC--CccccCCCCCCCcEEEEECCCccC
Confidence            9876543221      111111111111000      00000011111111111  111111346799999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CCHHHHHHHHHHccc
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRV  254 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~  254 (424)
                      .||+|.++|+++.............  ..+|++++.+|++|.+++...++.++..|+++++.+. .+...+.+.++++++
T Consensus       807 ~PKgv~~sh~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  884 (1140)
T PRK06814        807 TPKGVVLSHRNLLANRAQVAARIDF--SPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNA  884 (1140)
T ss_pred             CCcEEEecHHHHHHHHHHHHHhhCC--CCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCC
Confidence            9999999999998877766555544  3449999999999999997678889999999998764 567788899999999


Q ss_pred             eEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCC
Q 014435          255 TVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG  334 (424)
Q Consensus       255 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  334 (424)
                      |++.++|+++..+.+..  ...+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+....+.  ..+.+
T Consensus       885 t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--~~~~~  959 (1140)
T PRK06814        885 TILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTPM--HNKAG  959 (1140)
T ss_pred             EEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCCC--CCCCC
Confidence            99999999999887653  345678999999999999999999999988 69999999999998776654433  34567


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      ++|+|.+++++++.+. .+    .|+.|||+++|+.++.||             ++||+|||+|++|+||.+       |
T Consensus       960 ~vG~p~~g~~~~~~~~-~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d 1034 (1140)
T PRK06814        960 TVGRLLPGIEYRLEPV-PG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKR 1034 (1140)
T ss_pred             cCCccCCCCeEEEeec-CC----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccC
Confidence            9999999999999873 32    367899999999999999             469999999999999987       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       ++++|++|+|.|||+++.+||.|.+++|++
T Consensus      1035 ~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~ 1065 (1140)
T PRK06814       1035 FAKIAGEMISLAAVEELAAELWPDALHAAVS 1065 (1140)
T ss_pred             eeeeCCEEECHHHHHHHHHhcCCcccEEEEE
Confidence             999999999999999999999999999874

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.1e-50  Score=395.82  Aligned_cols=375  Identities=19%  Similarity=0.259  Sum_probs=309.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++|+++.++.+++..+++..++++++
T Consensus        25 ~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (503)
T PRK04813         25 GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLII  104 (503)
T ss_pred             CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccC-CCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG-SVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      ++++.....    ...                   .....+++..... ...........++++++++|||||||.||+|
T Consensus       105 ~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v  161 (503)
T PRK04813        105 ATEELPLEI----LGI-------------------PVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGV  161 (503)
T ss_pred             ecccccccc----cCC-------------------cEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEE
Confidence            987652100    000                   0011111111100 0011112334678899999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHHHHccceEE
Q 014435          181 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVW  257 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~  257 (424)
                      .++|+++.............  ...++++...|++|..++. .++.++..|+++++.+.   .++..+++.++++++|++
T Consensus       162 ~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~  238 (503)
T PRK04813        162 QISHDNLVSFTNWMLEDFAL--PEGPQFLNQAPYSFDLSVM-DLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVW  238 (503)
T ss_pred             EeehHHHHHHHHHHHHHcCC--CcCceeeecCCcchhHhHH-HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEE
Confidence            99999998877665555433  3448999999999999884 67789999999998865   588999999999999999


Q ss_pred             EechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC---CccCCC
Q 014435          258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV---GVRRSG  334 (424)
Q Consensus       258 ~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~  334 (424)
                      ..+|+++..+..........++++|.++++|+++++.+.+++.+.+++..+++.||+||++..++......   ......
T Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~  318 (503)
T PRK04813        239 VSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRL  318 (503)
T ss_pred             EeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCC
Confidence            99999998876655445556889999999999999999999999998899999999999876544322111   124455


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----------------hhccccCceEEEecCCce-----
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----------------ELTVNCNLFSYFRSNDHN-----  393 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----------------~~~~~TgD~g~~~~~g~~-----  393 (424)
                      ++|++.++++++|+| +++.+++.|+.|||+++|+.++.||                .+||+|||+|++ .+|.+     
T Consensus       319 ~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR  396 (503)
T PRK04813        319 PIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGR  396 (503)
T ss_pred             cccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEecc
Confidence            799999999999999 7899999999999999999999998                139999999999 88877     


Q ss_pred             --e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 --D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 --d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                        | ++.+|++|+|.+||+.+.++|+|.+++|+|
T Consensus       397 ~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  430 (503)
T PRK04813        397 IDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVP  430 (503)
T ss_pred             ccceEEECcEEeCHHHHHHHHHhCCCcceEEEEE
Confidence              3 899999999999999999999999999974

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-50  Score=393.77  Aligned_cols=384  Identities=26%  Similarity=0.347  Sum_probs=309.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||.||.+.++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++..+++++
T Consensus         8 ~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~i   87 (502)
T PRK08276          8 SGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVL   87 (502)
T ss_pred             CCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC------CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCC
Q 014435          101 ITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT  174 (424)
Q Consensus       101 i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  174 (424)
                      ++++.....+....      .+.+.+...          .......+++......     .......++.++++||||||
T Consensus        88 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGtT  152 (502)
T PRK08276         88 IVSAALADTAAELAAELPAGVPLLLVVAG----------PVPGFRSYEEALAAQP-----DTPIADETAGADMLYSSGTT  152 (502)
T ss_pred             EEccchhhHHHHHhhhccccccEEEEeCC----------CCCccccHHHHHhcCC-----CCCCCCCCcceEEEECCCCC
Confidence            99987766554331      122222111          0111223333322111     11123456789999999999


Q ss_pred             CCcchhhhcHHHHHHHHH--HHHh--hhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHH
Q 014435          175 GVSKGVILTHKNFIAASL--MISA--HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIE  250 (424)
Q Consensus       175 G~pK~v~~t~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~  250 (424)
                      |.||+|.++|.+......  ....  ........++++++..|++|.+++. ..+.++..|+++++.+.+++..+++.++
T Consensus       153 G~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~  231 (502)
T PRK08276        153 GRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLR-FGMSALALGGTVVVMEKFDAEEALALIE  231 (502)
T ss_pred             CCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHH-HHHHHHhccceEEEcCCCCHHHHHHHHH
Confidence            999999988766443211  1101  1111112458899999999999985 5557899999999998899999999999


Q ss_pred             HccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC
Q 014435          251 KYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      ++++|++.++|+++..+++....  ...+++++|.++++|+++++++.+++.+.+ +..+++.||+||+++++...... 
T Consensus       232 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~-  309 (502)
T PRK08276        232 RYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITSED-  309 (502)
T ss_pred             HhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecCcc-
Confidence            99999999999999999876542  234678999999999999999999999988 58899999999998755543322 


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce--
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~--  393 (424)
                      .....+++|+|+ ++.++|+| +++.+++.|+.|||+++|+.++.||             ++||+|||+++++++|.+  
T Consensus       310 ~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~  387 (502)
T PRK08276        310 WLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYL  387 (502)
T ss_pred             ccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEE
Confidence            134557899999 88999999 6789999999999999999999999             389999999999999876  


Q ss_pred             ----e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ----D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ----d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                          |  ++.+|++|++.+||.+|.++|+|.+|+|++
T Consensus       388 ~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~  424 (502)
T PRK08276        388 TDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFG  424 (502)
T ss_pred             eccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence                3  889999999999999999999999999874

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-51  Score=405.26  Aligned_cols=381  Identities=21%  Similarity=0.284  Sum_probs=300.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCC-------HHHHHHHHHh
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT-------VSELSKQVKD   94 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~i~~~l~~   94 (424)
                      ++.+||.||.+++.++|.+|+++|+++||+|+++++|+++++++++||+++|++++|+++..+       .+++.++++.
T Consensus        47 ~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~  126 (579)
T PRK09192         47 EEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLAS  126 (579)
T ss_pred             EEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHh
Confidence            467999999999999999999999999999999999999999999999999999999986433       6899999999


Q ss_pred             cCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCC
Q 014435           95 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT  174 (424)
Q Consensus        95 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  174 (424)
                      +++++++++++....+........                ......+.++.....  .........++++++++||||||
T Consensus       127 ~~~~~il~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTT  188 (579)
T PRK09192        127 AQPAAIITPDELLPWVNEATHGNP----------------LLHVLSHAWFKALPE--ADVALPRPTPDDIAYLQYSSGST  188 (579)
T ss_pred             cCCCEEEeChHHHHHHHHhhcccc----------------ccceeehhhhcccCC--CccccCCCCCCCeEEEEecCCCC
Confidence            999999999877665554321000                000111222221111  11112234578999999999999


Q ss_pred             CCcchhhhcHHHHHHHHHHHHh-hhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CCHHHHHHHH
Q 014435          175 GVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAI  249 (424)
Q Consensus       175 G~pK~v~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i  249 (424)
                      |.||+|.++|+++......... ....  ...++++..+|++|.+|+...++.++..|+++++.+.    .++..+++.+
T Consensus       189 G~PKgv~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i  266 (579)
T PRK09192        189 RFPRGVIITHRALMANLRAISHDGLKV--RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLI  266 (579)
T ss_pred             CCCceEEeeHHHHHHHHHHHHhhcccC--CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHH
Confidence            9999999999999887765554 3333  3348999999999999997677788899999876652    3688999999


Q ss_pred             HHccceEEEechHHHHHHHhccc---cccCCCCCeeEEEecCCCCCHHHHHHHHHhCCC-----CeEEecccCccCCCce
Q 014435          250 EKYRVTVWWVVPPIILALAKNSL---VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG-----ATIFQGYGMTETCAPI  321 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~---~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~  321 (424)
                      .++++++++..|..+..+.....   ....+++++|.+++||+++++.+.+++.+.++.     ..+++.||+||+++.+
T Consensus       267 ~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~  346 (579)
T PRK09192        267 SRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAV  346 (579)
T ss_pred             HhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEE
Confidence            99999988776665555443221   123467899999999999999999999887631     3589999999987655


Q ss_pred             eecCCCCC--------------------------ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh
Q 014435          322 SLENPLVG--------------------------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF  375 (424)
Q Consensus       322 ~~~~~~~~--------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy  375 (424)
                      +.......                          .....++|+|.|+++++|+| ++++.++.|+.|||+++|+.++.||
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY  425 (579)
T PRK09192        347 SFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGY  425 (579)
T ss_pred             eccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhh
Confidence            54322110                          01135789999999999999 6788999999999999999999999


Q ss_pred             ------------hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcc--cceecC
Q 014435          376 ------------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEIL--DAVVIP  424 (424)
Q Consensus       376 ------------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~--~a~v~g  424 (424)
                                  ++||+|||+|++ .+|++       | ++++|++|+|.|||++|.+||+|.  +|+|+|
T Consensus       426 ~~~~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~  495 (579)
T PRK09192        426 FRDEESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFS  495 (579)
T ss_pred             cCCccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEE
Confidence                        579999999999 88877       3 999999999999999999999998  788764

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.2e-51  Score=471.73  Aligned_cols=383  Identities=21%  Similarity=0.292  Sum_probs=319.1

Q ss_pred             cCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLVL-PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++.. .+++||+||.++++++|++|+++|+++|++|+++++++++++++++|++++|++++|++|.++.+++.+++
T Consensus      1145 p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il 1224 (4334)
T PRK05691       1145 PERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYML 1224 (4334)
T ss_pred             CCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHH
Confidence            45555543 45699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      ++++++++|++++....+...... ..+...                   +...... ....+.....++++++++||||
T Consensus      1225 ~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~a~ii~TSG 1283 (4334)
T PRK05691       1225 ADSGVELLLTQSHLLERLPQAEGV-SAIALD-------------------SLHLDSW-PSQAPGLHLHGDNLAYVIYTSG 1283 (4334)
T ss_pred             HhcCCCEEEecchhhhhcccccCc-eEEeec-------------------ccccccc-CCCCCCCCCCCCCeEEEEEcCC
Confidence            999999999998765544332110 011000                   0000000 0111222345789999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i  249 (424)
                      |||.||||.++|+++..............  .+++++...|++|..++. .++.+|..|+++++.+.   .++..+.+.+
T Consensus      1284 STG~PKgV~~~h~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i 1360 (4334)
T PRK05691       1284 STGQPKGVGNTHAALAERLQWMQATYALD--DSDVLMQKAPISFDVSVW-ECFWPLITGCRLVLAGPGEHRDPQRIAELV 1360 (4334)
T ss_pred             CCCCCceeEeecHHHHHHHHHHHHhcCCC--CCCEEEEeCCccHHHHHH-HHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence            99999999999999998877665555443  349999999999988885 78899999999999853   6899999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|++.++|+++..+.+...  ...+++||.+++||+++++++.++|.+.+++++++|.||+||++..++.......
T Consensus      1361 ~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~ 1438 (4334)
T PRK05691       1361 QQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAE 1438 (4334)
T ss_pred             HHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccc
Confidence            99999999999999999986543  2357899999999999999999999999988999999999998866554322222


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------------------hhccccCceEEEec
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------------------ELTVNCNLFSYFRS  389 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------------------~~~~~TgD~g~~~~  389 (424)
                      .....++|+|+++++++|+| ++++++|.|+.|||+|+|+.++.||                    ..||+|||+|++++
T Consensus      1439 ~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~ 1517 (4334)
T PRK05691       1439 DGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA 1517 (4334)
T ss_pred             cCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC
Confidence            34567899999999999999 6899999999999999999999999                    13899999999999


Q ss_pred             CCce------e--eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          390 NDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       390 ~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                      ||.+      |  ||++|++|+|.|||++|.+||+|.+|+|+
T Consensus      1518 dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~ 1559 (4334)
T PRK05691       1518 DGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVL 1559 (4334)
T ss_pred             CCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEE
Confidence            9987      4  99999999999999999999999999987

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.1e-51  Score=471.82  Aligned_cols=390  Identities=16%  Similarity=0.207  Sum_probs=319.6

Q ss_pred             ecCCCCCCCC-CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           13 RSLRPPLVLP-SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        13 ~~~~~~~~~~-~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      .++..|+..+ .++||+||.++++++|+.|.+.|+++|++|+++++++++++++++|++++|++++|++|.++.+.+.++
T Consensus      3733 ~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~i 3812 (4334)
T PRK05691       3733 HPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRI 3812 (4334)
T ss_pred             CCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHH
Confidence            3566666544 459999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435           92 VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      ++.++++++|++++.......+.......             ....+..+++....... ...+.....+++.++++|||
T Consensus      3813 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ayvi~TS 3878 (4334)
T PRK05691       3813 IELSRTPVLVCSAACREQARALLDELGCA-------------NRPRLLVWEEVQAGEVA-SHNPGIYSGPDNLAYVIYTS 3878 (4334)
T ss_pred             HHhcCCCEEEecCcccchhhhhhcccccc-------------cccceeeeccccccccc-ccCCCCCCCCCceEEEEECC
Confidence            99999999999987654332221110000             00000011111110100 11222345689999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRA  248 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~  248 (424)
                      ||||.||||+++|+++.+............  ..++++...++++..+++ .++.++..|+++++++.   .++..+.+.
T Consensus      3879 GSTG~PKGV~~~h~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~fd~s~~-~~~~~l~~G~~l~i~~~~~~~~~~~l~~~ 3955 (4334)
T PRK05691       3879 GSTGLPKGVMVEQRGMLNNQLSKVPYLALS--EADVIAQTASQSFDISVW-QFLAAPLFGARVEIVPNAIAHDPQGLLAH 3955 (4334)
T ss_pred             CCCCCCCEEEeehHHHHHHHHHHHHhcCCC--ccceEEEecCCchhHHHH-HHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence            999999999999999999877766655543  349999999999999885 78899999999998864   578999999


Q ss_pred             HHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      ++++++|++.++|+++..++...   ...+++||.+++||+++++++.++|.+.+++++++|.||+||++..++......
T Consensus      3956 ~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~ 4032 (4334)
T PRK05691       3956 VQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDL 4032 (4334)
T ss_pred             HHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccc
Confidence            99999999999999999887543   224689999999999999999999999888999999999999887665433221


Q ss_pred             C--ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------------------hhccccCceEE
Q 014435          329 G--VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------------------ELTVNCNLFSY  386 (424)
Q Consensus       329 ~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------------------~~~~~TgD~g~  386 (424)
                      .  .....++|+|+++++++|+| +.++++|.|.+|||+|+|+.++.||                    ++||+|||+++
T Consensus      4033 ~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4033 ASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             ccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCccee
Confidence            1  22345799999999999999 7899999999999999999999999                    25799999999


Q ss_pred             EecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          387 FRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       387 ~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                      +++||.+      |  +|++|++|.+.|||++|.++|+|++|+|+
T Consensus      4112 ~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~ 4156 (4334)
T PRK05691       4112 RRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVA 4156 (4334)
T ss_pred             ecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEE
Confidence            9999987      4  99999999999999999999999999885

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-50  Score=416.89  Aligned_cols=397  Identities=14%  Similarity=0.145  Sum_probs=296.2

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. ..+.+||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|++++|++|.   .++.+++
T Consensus       461 pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il  537 (994)
T PRK07868        461 PKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAV  537 (994)
T ss_pred             CCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHH
Confidence            3444443 34579999999999999999999999999999999999999999999999999999999985   6789999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCC-CCCCCCCCCCEEEEecCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD-IPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TS  171 (424)
                      +.++++++|++++....+.....+.+........ .. ..........+++.......... .......++|+++|+|| 
T Consensus       538 ~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-  614 (994)
T PRK07868        538 RLGGVTEIITDPTNLEAARQLPGRVLVLGGGESR-DL-DLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-  614 (994)
T ss_pred             hccCCeEEEEChHHHHHHHhcCceEEEecCCccc-cc-cCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-
Confidence            9999999999987776655443333222111000 00 00000011111111110000000 01112236899999998 


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK  251 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~  251 (424)
                      ||||.||++.++|.+.............+  ..++++++.+|++|.+++...++..+..|+++++.+.+++..+++.|++
T Consensus       615 gStgtpKpk~vt~~~~~~~~~~~~~~~~l--~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~  692 (994)
T PRK07868        615 TAGGELVAKQITNYRWALSAFGTASAAAL--DRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQ  692 (994)
T ss_pred             CCCCCcCcEEEehHHHHHHHHhhhhhcCC--CCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHH
Confidence            57777777777776655443332222223  3459999999999999997667777888888888888999999999999


Q ss_pred             ccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCcc
Q 014435          252 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR  331 (424)
Q Consensus       252 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~  331 (424)
                      +++|+++++|+++..|++.......+++++|.++  |+.+++++.+++.+.++++++++.||+||++.... .. .  ..
T Consensus       693 ~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~-~--~~  766 (994)
T PRK07868        693 YGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV-S--GA  766 (994)
T ss_pred             hCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccc-cc-C--CC
Confidence            9999999999999999886544445678899876  33499999999999997789999999999765433 22 1  24


Q ss_pred             CCCccccccCCc-EEEEe--eC--------CCC--ccCCCCCceeEEEecCCc-------chhh----hhccccCceEEE
Q 014435          332 RSGSAGTLVAGV-EAQIV--SV--------DTL--KPLPPNQLGEIWVRGPNV-------TPVF----ELTVNCNLFSYF  387 (424)
Q Consensus       332 ~~~~~G~~~~~~-~~~i~--d~--------~~~--~~~~~g~~Gel~v~~~~~-------~~gy----~~~~~TgD~g~~  387 (424)
                      +.+++|+|++++ +++|.  |+        ++|  +.++.|+.|||+++++..       ..+|    ++||+|||+|++
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw~~TGDlg~~  846 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPIDPTASVKRGVFAPADTWISTEYLFRR  846 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCCChhhhhHhcccccCCEEEeccceEEE
Confidence            567999999997 66664  11        345  567899999999999753       2222    689999999999


Q ss_pred             ecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+||++       | |+++|++|+|.|||++|.+||.|.+|+|+|
T Consensus       847 d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg  891 (994)
T PRK07868        847 DDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYG  891 (994)
T ss_pred             cCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEe
Confidence            999988       3 999899999999999999999999999985

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.4e-50  Score=392.99  Aligned_cols=361  Identities=17%  Similarity=0.175  Sum_probs=273.3

Q ss_pred             CCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEcccch------HHHhcC----CCCeEEEecCCC
Q 014435           56 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW------DKVKDL----NLPAVLLGSKDK  125 (424)
Q Consensus        56 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~------~~~~~~----~~~~~~~~~~~~  125 (424)
                      +||++++++++|||+++|++++|+++.++.+++.++++.++++++|+++...      ..+...    ....++......
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            5899999999999999999999999999999999999999999999986431      111111    111121111100


Q ss_pred             ccccccccCCCcccchhhhhhccCCC-----CCCCCCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhh
Q 014435          126 VSSSGLISRSSKIVSFHDLIELSGSV-----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL  200 (424)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~  200 (424)
                      ..  . .........+++++......     .........++|+++|+|||||||.||+|.++|+++.............
T Consensus        81 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~  157 (499)
T PLN03051         81 PV--A-VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDI  157 (499)
T ss_pred             cc--C-CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCC
Confidence            00  0 00001122445544211100     0111112356899999999999999999999999987654433333233


Q ss_pred             ccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CCHHHHHHHHHHccceEEEechHHHHHHHhccc--cccCC
Q 014435          201 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFD  277 (424)
Q Consensus       201 ~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~  277 (424)
                        ..++++++.+|++|.+++. .++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|.+...  ....+
T Consensus       158 --~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~  234 (499)
T PLN03051        158 --QPGDVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLD  234 (499)
T ss_pred             --CCCCEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCC
Confidence              3448999999999999984 67888999999998864 788999999999999999999999999887643  33456


Q ss_pred             CCCeeEEEecCCCCCHHHHHHHHHhCC-CCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccC
Q 014435          278 ISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL  356 (424)
Q Consensus       278 ~~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~  356 (424)
                      +++||.+++||+++++++.+++++.++ ++.+++.||+||+++......... ....+++|+|.++++++|+| ++++++
T Consensus       235 ~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~ivd-~~g~~~  312 (499)
T PLN03051        235 WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQ-PQAPGAFSTASLGTRFVLLN-DNGVPY  312 (499)
T ss_pred             chhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccC-CCCCccccCCCCCceEEEEC-CCCCCC
Confidence            789999999999999999988777331 478999999999865433322211 23467899999999999999 689999


Q ss_pred             CCC--CceeEEEecCCc--chhh----------hh----------ccccCceEEEecCCce-------e-eEeeeeeeCh
Q 014435          357 PPN--QLGEIWVRGPNV--TPVF----------EL----------TVNCNLFSYFRSNDHN-------D-FFCKLFQVAP  404 (424)
Q Consensus       357 ~~g--~~Gel~v~~~~~--~~gy----------~~----------~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~  404 (424)
                      +.|  +.|||+++|+.+  +.||          ++          ||+|||+|++|+||++       | |+++|++|+|
T Consensus       313 ~~g~~~~Gel~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p  392 (499)
T PLN03051        313 PDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSS  392 (499)
T ss_pred             CCCCCcceEEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCH
Confidence            988  589999999976  3565          23          5899999999999988       3 9999999999


Q ss_pred             hhHHHHHhc-CCCcccceecC
Q 014435          405 AELEGLLVS-HPEILDAVVIP  424 (424)
Q Consensus       405 ~~iE~~l~~-~p~V~~a~v~g  424 (424)
                      .|||++|.+ ||+|.||+|+|
T Consensus       393 ~EIE~~l~~~~p~V~~aavvg  413 (499)
T PLN03051        393 VEIERACDRAVAGIAETAAVG  413 (499)
T ss_pred             HHHHHHHHhcCCCcceEEEEE
Confidence            999999986 99999999985

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=8.4e-50  Score=382.43  Aligned_cols=355  Identities=26%  Similarity=0.356  Sum_probs=292.7

Q ss_pred             cHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEccc
Q 014435           26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE  105 (424)
Q Consensus        26 Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~  105 (424)
                      ||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..++++.+++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             chHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhhcHH
Q 014435          106 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK  185 (424)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~  185 (424)
                      .....       +.                  ...+..+...... ..........+++++++|||||||.||+|.++|+
T Consensus        81 ~~~~~-------~~------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~  134 (436)
T TIGR01923        81 LEEKD-------FQ------------------ADSLDRIEAAGRY-ETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFR  134 (436)
T ss_pred             ccccc-------ee------------------ecchHhhhhcccc-cccccccCCcCceEEEEeCCCCCCCCcEEEEehH
Confidence            42110       00                  0001111111110 1111233456889999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEechHHHH
Q 014435          186 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL  265 (424)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~  265 (424)
                      ++...+.........  ..+++++..+|++|.+++. .++.++..|+++++.+.+  ..+++.++++++|++.++|+++.
T Consensus       135 ~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~  209 (436)
T TIGR01923       135 NHYASAVGSKENLGF--TEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLN  209 (436)
T ss_pred             HHHHHHHHHHhhcCC--CCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHH
Confidence            998887766655544  3448999999999999985 678999999999998765  38999999999999999999999


Q ss_pred             HHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEE
Q 014435          266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA  345 (424)
Q Consensus       266 ~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  345 (424)
                      .+.+....    .+++|.++++|+++++++.+++++.  ++.+++.||+||++...+.........+ .++|.|++++++
T Consensus       210 ~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~-~~~G~~~~~~~~  282 (436)
T TIGR01923       210 RLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHAR-PDVGRPLAGREI  282 (436)
T ss_pred             HHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccc-cCCCccCCCcEE
Confidence            99876532    2689999999999999999998775  7999999999999876554433322222 248999999999


Q ss_pred             EEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------e-eEeeeeeeChh
Q 014435          346 QIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPA  405 (424)
Q Consensus       346 ~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~  405 (424)
                      ++.+.+.      ++.|||+++|+.++.||            ++||+|||+++++++|.+       | ++++|++|++.
T Consensus       283 ~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~  356 (436)
T TIGR01923       283 KIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPE  356 (436)
T ss_pred             EEEeCCC------CCceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHH
Confidence            9944222      37799999999999998            578999999999999877       3 89999999999


Q ss_pred             hHHHHHhcCCCcccceecC
Q 014435          406 ELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       406 ~iE~~l~~~p~V~~a~v~g  424 (424)
                      +||++|.++|.|.+++|++
T Consensus       357 ~iE~~l~~~~~v~~~~v~~  375 (436)
T TIGR01923       357 EIETVLYQHPGIQEAVVVP  375 (436)
T ss_pred             HHHHHHHhCCCeeEEEEeC
Confidence            9999999999999999975

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.4e-50  Score=394.68  Aligned_cols=378  Identities=21%  Similarity=0.283  Sum_probs=301.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHH-------HHHHHHh
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE-------LSKQVKD   94 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~-------i~~~l~~   94 (424)
                      ++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.++       +..+++.
T Consensus        27 ~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~  106 (545)
T PRK07768         27 PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGM  106 (545)
T ss_pred             ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHh
Confidence            567999999999999999999999999999999999999999999999999999999998877544       4556788


Q ss_pred             cCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCC
Q 014435           95 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT  174 (424)
Q Consensus        95 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  174 (424)
                      ++++.+++++........+...                  ......++++.....    .......++++++++||||||
T Consensus       107 ~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~----~~~~~~~~~~~a~i~~TSGtT  164 (545)
T PRK07768        107 IGAKAVVVGEPFLAAAPVLEEK------------------GIRVLTVADLLAADP----IDPVETGEDDLALMQLTSGST  164 (545)
T ss_pred             CCCCEEEecchhhhhhhhhccc------------------CCceeehhhhcccCC----CCcCCCCCCCEEEEEeCCCCC
Confidence            8999999987655433322110                  011223333332211    122244579999999999999


Q ss_pred             CCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CCHHHHHHHHH
Q 014435          175 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIE  250 (424)
Q Consensus       175 G~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~  250 (424)
                      |.||+|+++|+++.............. ...+++++.+|++|..++...++.++..|+++++.++    .++..+.+.++
T Consensus       165 G~PKgv~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~  243 (545)
T PRK07768        165 GSPKAVQITHGNLYANAEAMFVAAEFD-VETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELIS  243 (545)
T ss_pred             CCCceEEEcHHHHHHHHHHHHHhcCCC-CCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHH
Confidence            999999999999988776655544432 2237899999999999997667788999999988754    26788899999


Q ss_pred             HccceEEEechHHHHHHHhcc----ccccCCCCCeeEEEecCCCCCHHHHHHHHHh---CC--CCeEEecccCccCCCce
Q 014435          251 KYRVTVWWVVPPIILALAKNS----LVRKFDISSLKLVGSGAAPLGKELMEDCQKN---IP--GATIFQGYGMTETCAPI  321 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~----~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~---~~--~~~~~~~yG~tE~~~~~  321 (424)
                      +++++++..+|.++..+....    .....+++++|.++++|+++++.+.+++.+.   ++  ...+++.||+||++..+
T Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~  323 (545)
T PRK07768        244 KYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAV  323 (545)
T ss_pred             HhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEE
Confidence            999999988887776655422    1123567899999999999999999998874   32  23599999999988655


Q ss_pred             eecCCCC------------------------CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--
Q 014435          322 SLENPLV------------------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--  375 (424)
Q Consensus       322 ~~~~~~~------------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--  375 (424)
                      .......                        .....+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||  
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~  402 (545)
T PRK07768        324 SFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLT  402 (545)
T ss_pred             EccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccC
Confidence            4332210                        012346899999999999999 7889999999999999999999998  


Q ss_pred             ----------hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          376 ----------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       376 ----------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                                ++||+|||+++++++|.+       | ++.+|++|+|.+||+.|.+||+|.+++|+
T Consensus       403 ~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv  468 (545)
T PRK07768        403 MDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAV  468 (545)
T ss_pred             CCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEE
Confidence                      569999999999999877       3 89999999999999999999999998765

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-49  Score=386.64  Aligned_cols=382  Identities=24%  Similarity=0.299  Sum_probs=302.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.|||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++.+++++++++.++
T Consensus        22 ~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li  101 (511)
T PRK13391         22 GEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALI  101 (511)
T ss_pred             CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++.+....+.....     ...+....+        ........+++......     .......++.++++|||||||.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~il~TSGtTG~  168 (511)
T PRK13391        102 TSAAKLDVARALLKQCPGVRHRLVLDGD--------GELEGFVGYAEAVAGLP-----ATPIADESLGTDMLYSSGTTGR  168 (511)
T ss_pred             EchhhHHHHHHHHhcCCCceEEEEecCC--------CCCcccccHHHHhcCCC-----CCCCCCcccccEEEECCCCCCC
Confidence            99876554433221     111111110        00111222232222111     0111234567899999999999


Q ss_pred             cchhhh--cHHHHHHHH---HHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHH
Q 014435          177 SKGVIL--THKNFIAAS---LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK  251 (424)
Q Consensus       177 pK~v~~--t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~  251 (424)
                      ||+|.+  +|.+.....   ........  ...++++++.+|++|.+++. ..+.++..|+++++.+.+++..+++.+++
T Consensus       169 PKgv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  245 (511)
T PRK13391        169 PKGIKRPLPEQPPDTPLPLTAFLQRLWG--FRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVMEHFDAEQYLALIEE  245 (511)
T ss_pred             CCEEEEccccchhhhhhHHHHHHHHhcC--CCCCCeEEEcCCHHHHHHHH-HHHHHHHcCceEEECCCCCHHHHHHHHHH
Confidence            999985  455543322   11112222  23448999999999999885 66778889999999988999999999999


Q ss_pred             ccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          252 YRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       252 ~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++|++.++|+++..+.+....  ...+++++|.+++||+++++++.+++++.+ +..+++.||+||+++++...... .
T Consensus       246 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~-~  323 (511)
T PRK13391        246 YGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACDSEE-W  323 (511)
T ss_pred             hCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEecCcc-c
Confidence            9999999999999988765332  234578999999999999999999999988 58899999999998765543222 1


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------------hhccccCceEEEecCCce--
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------------~~~~~TgD~g~~~~~g~~--  393 (424)
                      ....+++|+|.++ +++|+| +++++++.|+.|||+++|+ +..+|              ++||+|||+|+++++|.+  
T Consensus       324 ~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~  400 (511)
T PRK13391        324 LAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYL  400 (511)
T ss_pred             cccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEE
Confidence            3455789999999 689999 6899999999999999999 67777              179999999999999976  


Q ss_pred             -----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           | ++.+|++|+|.+||++|.+||.|.+|+|+|
T Consensus       401 ~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~  437 (511)
T PRK13391        401 TDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFG  437 (511)
T ss_pred             eccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEe
Confidence                 3 889999999999999999999999999874

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5e-49  Score=387.36  Aligned_cols=394  Identities=20%  Similarity=0.259  Sum_probs=300.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      +..+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.+++++++
T Consensus        41 ~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~  120 (545)
T PRK08162         41 DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLI  120 (545)
T ss_pred             CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEE
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC----CC-eEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLN----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++++....+.+..    .. .+.+........  . ........+++++..... ........+.+++++++|||||||.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~  196 (545)
T PRK08162        121 VDTEFAEVAREALALLPGPKPLVIDVDDPEYP--G-GRFIGALDYEAFLASGDP-DFAWTLPADEWDAIALNYTSGTTGN  196 (545)
T ss_pred             EccchhhHHHHHHhhCCCCceEEEecCccccc--c-CCCcccccHHHHhccCCc-cccccCCCCCCCeEEEEeCCCCCCC
Confidence            9988776654421    11 222221110000  0 001122344444432211 1111112345689999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|+++|+++...+.........  ..++++++.+|++|.+++...++..+..| +.+....+++..+++.++++++|+
T Consensus       197 PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~l~~~pl~h~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~l~~~~~t~  273 (545)
T PRK08162        197 PKGVVYHHRGAYLNALSNILAWGM--PKHPVYLWTLPMFHCNGWCFPWTVAARAG-TNVCLRKVDPKLIFDLIREHGVTH  273 (545)
T ss_pred             CcEEEEecHHHHHHHHHHHHhcCC--CCCCeeEeccCcHhhhhHHHHHHHHHHcc-EEEEeCCCCHHHHHHHHHHcCCeE
Confidence            999999999876654443333333  33478999999999999865555555544 444456789999999999999999


Q ss_pred             EEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC--------
Q 014435          257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV--------  328 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--------  328 (424)
                      +.++|+++..|++........+.+.+.++++|+++++++.+.+++.  ++++++.||+||+++.+.......        
T Consensus       274 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  351 (545)
T PRK08162        274 YCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLD  351 (545)
T ss_pred             EEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCcc
Confidence            9999999999987655443345567777899999999999998875  699999999999865444322110        


Q ss_pred             -CccCCCccccccCC-cEEEEeeCCCCccCCC-C-CceeEEEecCCcchhh------------hhccccCceEEEecCCc
Q 014435          329 -GVRRSGSAGTLVAG-VEAQIVSVDTLKPLPP-N-QLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDH  392 (424)
Q Consensus       329 -~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~-g-~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~  392 (424)
                       ......+.|.+.+. ..++|+|++++++++. | +.|||+++|+.++.||            ++||+|||+|+++++|.
T Consensus       352 ~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~  431 (545)
T PRK08162        352 ERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGY  431 (545)
T ss_pred             chhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCcc
Confidence             01112455665543 3578889778888876 3 4699999999999999            57999999999999997


Q ss_pred             e-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          393 N-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       393 ~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +       | ++.+|++|+|.+||++|.+||+|.+++|+|
T Consensus       432 l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~  471 (545)
T PRK08162        432 IKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVA  471 (545)
T ss_pred             EEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEe
Confidence            7       3 889999999999999999999999999975

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-49  Score=375.61  Aligned_cols=333  Identities=17%  Similarity=0.148  Sum_probs=284.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++++++++++
T Consensus         6 ~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i   84 (414)
T PRK08308          6 DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLL   84 (414)
T ss_pred             CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEE
Confidence            457999999999999999985 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhh
Q 014435          102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI  181 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~  181 (424)
                      +++....           .                     .      .      .....++++++++|||||||.||+|.
T Consensus        85 ~~~~~~~-----------~---------------------~------~------~~~~~~~~~~~i~~TSGtTG~PKgv~  120 (414)
T PRK08308         85 YGESDFT-----------K---------------------L------E------AVNYLAEEPSLLQYSSGTTGEPKLIR  120 (414)
T ss_pred             ecCcccc-----------c---------------------c------c------CCCCCCCCceEEEECCCCCCCCcEEE
Confidence            8652100           0                     0      0      00124678999999999999999999


Q ss_pred             hcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEech
Q 014435          182 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP  261 (424)
Q Consensus       182 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p  261 (424)
                      ++|+++.............  ..+++.+..+|++|.+|+...++.++..|+++++.+..++..+++.++++++|+++++|
T Consensus       121 ~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P  198 (414)
T PRK08308        121 RSWTEIDREIEAYNEALNC--EQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVP  198 (414)
T ss_pred             EehHhHHHHHHHHHHhhCC--CcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCH
Confidence            9999998877665544433  34488999999999999877789999999999999889999999999999999999999


Q ss_pred             HHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccC
Q 014435          262 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA  341 (424)
Q Consensus       262 ~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~  341 (424)
                      +++..+.+....    ..+++.++++|+++++++.+++++.  +.++++.||+||++.+.. ...   ....+++|+|++
T Consensus       199 ~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~-~~~---~~~~~~~G~p~~  268 (414)
T PRK08308        199 LMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSI-CPD---MKSHLDLGNPLP  268 (414)
T ss_pred             HHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeee-cCC---CCCCCccCccCC
Confidence            999999876432    1368889999999999999999987  478999999999875433 221   235578999999


Q ss_pred             CcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecCCce------e--eEeeeeeeChhhHHHHHhc
Q 014435          342 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHN------D--FFCKLFQVAPAELEGLLVS  413 (424)
Q Consensus       342 ~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~  413 (424)
                      ++++++.+.       .++.||+++++.      ++||+|||+|+++++|.+      |  ++++|++|+|.+||+++.+
T Consensus       269 ~~~~~~~~~-------~~~~gel~v~~~------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~  335 (414)
T PRK08308        269 HVSVSAGSD-------ENAPEEIVVKMG------DKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLR  335 (414)
T ss_pred             CeEEEEecC-------CCCCceEEEEcC------CceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence            999998762       366799999864      589999999999999876      3  9999999999999999999


Q ss_pred             CCCcccceecC
Q 014435          414 HPEILDAVVIP  424 (424)
Q Consensus       414 ~p~V~~a~v~g  424 (424)
                      +|+|.+|+|++
T Consensus       336 ~~~v~~a~v~~  346 (414)
T PRK08308        336 LPGVQEAVVYR  346 (414)
T ss_pred             CCCeeEEEEEe
Confidence            99999999874

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-49  Score=394.41  Aligned_cols=382  Identities=19%  Similarity=0.275  Sum_probs=286.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCC---CCCHHHHHHHHHhcCCe
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP---VYTVSELSKQVKDSNPK   98 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~i~~~l~~~~~~   98 (424)
                      .++|||+||.+++.++|++|.+.| ++||+|+++++|+++++++++||+++|++++|+++   ..+.+++.+++++++++
T Consensus        33 ~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~  111 (578)
T PRK05850         33 AETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPS  111 (578)
T ss_pred             eeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCC
Confidence            367999999999999999999999 68999999999999999999999999999999997   45788999999999999


Q ss_pred             EEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcc
Q 014435           99 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK  178 (424)
Q Consensus        99 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  178 (424)
                      +++++++....+..........             ....+...+.. ..... .........++++++++|||||||.||
T Consensus       112 ~il~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PK  176 (578)
T PRK05850        112 VVLTTSAVVDDVTEYVAPQPGQ-------------SAPPVIEVDLL-DLDSP-RGSDARPRDLPSTAYLQYTSGSTRTPA  176 (578)
T ss_pred             EEEEcHHHHHHHHHHHhhcccc-------------cccceEeeccc-ccccC-CccccCCCCCCCeEEEEeCCCCCCCCc
Confidence            9999987766654321100000             00000000000 00000 011112345689999999999999999


Q ss_pred             hhhhcHHHHHHHHHHHHhhh-hhc---cCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCC----CHHHHHHHHH
Q 014435          179 GVILTHKNFIAASLMISAHQ-ELV---GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIE  250 (424)
Q Consensus       179 ~v~~t~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~  250 (424)
                      +|.++|+++...+....... ...   ...++++++.+|++|.+|+...++.++..|+++++.++.    ++..+++.++
T Consensus       177 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~  256 (578)
T PRK05850        177 GVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLA  256 (578)
T ss_pred             eEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHH
Confidence            99999999987765443222 110   123478999999999999977789999999999988642    7899999999


Q ss_pred             HccceEEEechHHHH-HHHhcc---ccccCCCCCeeEEEecCCCCCHHHHHHHHHhCC-----CCeEEecccCccCCCce
Q 014435          251 KYRVTVWWVVPPIIL-ALAKNS---LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-----GATIFQGYGMTETCAPI  321 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~-~l~~~~---~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~  321 (424)
                      ++++++. .+|..+. .+....   .....+++++|.+++||+++++++.++|.+.|+     +..+++.||+||++..+
T Consensus       257 ~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  335 (578)
T PRK05850        257 SNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYV  335 (578)
T ss_pred             HcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhhe
Confidence            9999865 5565543 333221   112345789999999999999999999988763     34789999999987544


Q ss_pred             eecCCCCC-----------------------ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh---
Q 014435          322 SLENPLVG-----------------------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---  375 (424)
Q Consensus       322 ~~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy---  375 (424)
                      ........                       .....++|.|. +.+++|+|++++.+++.|+.|||+++|+.++.||   
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~  414 (578)
T PRK05850        336 ATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQK  414 (578)
T ss_pred             eccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCC
Confidence            43221100                       00011334443 5789999977789999999999999999999999   


Q ss_pred             --------h-------------hccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          376 --------E-------------LTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       376 --------~-------------~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                              .             +||+|||+|+++ +|.+       | |+++|++|+|.|||++|.+||.+. ++|+
T Consensus       415 ~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~  489 (578)
T PRK05850        415 PEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAI  489 (578)
T ss_pred             hhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEE
Confidence                    0             499999999998 8877       3 999999999999999999999864 5554

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.5e-49  Score=379.29  Aligned_cols=342  Identities=22%  Similarity=0.312  Sum_probs=284.6

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++
T Consensus        25 ~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (458)
T PRK09029         25 NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFA  104 (458)
T ss_pred             CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchh
Q 014435          101 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV  180 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  180 (424)
                      +++++... +....  .                    . ...     ..  .........++++++++|||||||.||+|
T Consensus       105 i~~~~~~~-~~~~~--~--------------------~-~~~-----~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv  153 (458)
T PRK09029        105 LVLEGENT-FSALT--S--------------------L-HLQ-----LV--EGAHAVAWQPQRLATMTLTSGSTGLPKAA  153 (458)
T ss_pred             EEcCcccc-hhhcc--c--------------------c-ccc-----cc--cccCcccCCCCCeEEEEECCCCCCCCCEE
Confidence            99876432 11000  0                    0 000     00  01112234578899999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEec
Q 014435          181 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV  260 (424)
Q Consensus       181 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  260 (424)
                      .++|+++..............  .+++++..+|++|.+|+. .++.++..|+++++.+.   ..+.+.+.  ++|.+..+
T Consensus       154 ~~s~~~~~~~~~~~~~~~~~~--~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v~~~~~---~~~~~~i~--~~t~~~~~  225 (458)
T PRK09029        154 VHTAQAHLASAEGVLSLMPFT--AQDSWLLSLPLFHVSGQG-IVWRWLYAGATLVVRDK---QPLEQALA--GCTHASLV  225 (458)
T ss_pred             EEeHHHHHHHHHHHhhcCCCC--ccceEEEecCcHhhhhhH-HHHHHHhCCceEEeCCh---HHHHHHHh--hceeeecC
Confidence            999999998877665554443  348999999999999985 66778999999998764   45666663  78999999


Q ss_pred             hHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcccccc
Q 014435          261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV  340 (424)
Q Consensus       261 p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~  340 (424)
                      |+++..++.....    ..++|.+++||+++++.+.+++.+.  +.++++.||+||++...+.....    ...++|+|+
T Consensus       226 P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~----~~~~~G~~~  295 (458)
T PRK09029        226 PTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRAD----GLAGVGSPL  295 (458)
T ss_pred             hHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCCC----CCCCCCCCC
Confidence            9999998876442    3479999999999999999998865  79999999999988655443221    234699999


Q ss_pred             CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------e-eEeeee
Q 014435          341 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FFCKLF  400 (424)
Q Consensus       341 ~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~~~G~  400 (424)
                      ++++++|++            |||+++|+.++.||            ++||+|||+|+++ +|.+       | ++++|+
T Consensus       296 ~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~  362 (458)
T PRK09029        296 PGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGE  362 (458)
T ss_pred             CCCEEEEeC------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccceeeCCE
Confidence            999999987            89999999999998            5799999999999 8877       3 899999


Q ss_pred             eeChhhHHHHHhcCCCcccceecC
Q 014435          401 QVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       401 ~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|+|.+||++|.+||+|.+|+|+|
T Consensus       363 ~v~p~eiE~~l~~~~~v~~~~v~~  386 (458)
T PRK09029        363 GIQPEEIERVINQHPLVQQVFVVP  386 (458)
T ss_pred             EeCHHHHHHHHhcCCCcceEEEEc
Confidence            999999999999999999999985

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.9e-49  Score=370.29  Aligned_cols=395  Identities=26%  Similarity=0.348  Sum_probs=320.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEcc
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP  104 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~  104 (424)
                      +||.|+.+.+.++|..|...|+++||+|++++|+.++++++.+||.++|++..++-..+++.++...++..+++++++.+
T Consensus        97 ~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d  176 (626)
T KOG1175|consen   97 WTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQD  176 (626)
T ss_pred             EEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEe
Confidence            89999999999999999988999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cchHHHhcCCCCeEEEecCCCcc------ccc-cccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCc
Q 014435          105 ELWDKVKDLNLPAVLLGSKDKVS------SSG-LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS  177 (424)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~p  177 (424)
                      ......+...............+      ... ..........+++.+....  +..+....+.+|+.+|+|||||||.|
T Consensus       177 ~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~--~~~~~~~~~~edpl~IlfTSGtTg~P  254 (626)
T KOG1175|consen  177 VVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKAS--PEHPCVPVKAEDPLFILFTSGTTGKP  254 (626)
T ss_pred             eeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcC--CCCCceecCccCceEEEecCCCCCCC
Confidence            66554444332110000000000      000 0011112334555545444  34446777899999999999999999


Q ss_pred             chhhhcHHHHHHH-HHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHHHccc
Q 014435          178 KGVILTHKNFIAA-SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRV  254 (424)
Q Consensus       178 K~v~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~  254 (424)
                      |++.+++....-. +......  +.....|++.+.....|+.|.+...+.+|..|+++++.+  ++++..+++.+.++++
T Consensus       255 K~v~ht~~g~ll~~~~~~~~~--~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~i  332 (626)
T KOG1175|consen  255 KGVIHTTGGYLLGAALTSRYH--FDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKV  332 (626)
T ss_pred             CceeeccCcchHHHhhhccee--ccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcce
Confidence            9999988865443 3332233  333444999999999999999988999999999999985  3699999999999999


Q ss_pred             eEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccC
Q 014435          255 TVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR  332 (424)
Q Consensus       255 t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~  332 (424)
                      |++++.|+.++.|.+....  ...++++||.+.+.|++++++..+++.+.+....|++.||+||+|+.+....+......
T Consensus       333 t~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~  412 (626)
T KOG1175|consen  333 TVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIK  412 (626)
T ss_pred             EEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcC
Confidence            9999999999987766544  34445789999999999999999999999853469999999999998887666543578


Q ss_pred             CCccccccCCcEEEEeeCCCCccCCCC-CceeEEEecCCc---chhh---------------hhccccCceEEEecCCce
Q 014435          333 SGSAGTLVAGVEAQIVSVDTLKPLPPN-QLGEIWVRGPNV---TPVF---------------ELTVNCNLFSYFRSNDHN  393 (424)
Q Consensus       333 ~~~~G~~~~~~~~~i~d~~~~~~~~~g-~~Gel~v~~~~~---~~gy---------------~~~~~TgD~g~~~~~g~~  393 (424)
                      +++.+.|.+++.+.|.| ++|+.++.+ +.|+|+++.+..   +.+|               .++|.|||.+++|+||.+
T Consensus       413 pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~  491 (626)
T KOG1175|consen  413 PGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYY  491 (626)
T ss_pred             ccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceE
Confidence            89999999999999999 589988877 999999998754   3333               566799999999999988


Q ss_pred             ------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            |  ++++|+++++.|||+++.+||.|.|++|||
T Consensus       492 ~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg  530 (626)
T KOG1175|consen  492 WILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVG  530 (626)
T ss_pred             EEEecccccccccceeecHHHHHHHHhhCcchhheeeec
Confidence                  4  999999999999999999999999999997

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-48  Score=378.22  Aligned_cols=390  Identities=21%  Similarity=0.238  Sum_probs=301.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.+++++++++++
T Consensus        25 ~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~  104 (533)
T PRK07798         25 GDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVAL  104 (533)
T ss_pred             CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCCCC----eEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          101 ITVPELWDKVKDLNLP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       101 i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      +++++....+.+....    ..++........    ....+..++++++.....  ...... ..++.++++|||||||.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~~TSGTTG~  177 (533)
T PRK07798        105 VYEREFAPRVAEVLPRLPKLRTLVVVEDGSGN----DLLPGAVDYEDALAAGSP--ERDFGE-RSPDDLYLLYTGGTTGM  177 (533)
T ss_pred             EEchhhHHHHHHHhccCCCccEEEEecCCccc----ccCCccccHHHHHhccCC--cCCCCC-CCCCceEEEECCCCCCC
Confidence            9998766665543211    111111111100    011123355555543221  111112 23445789999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhh------hh-------ccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCC
Q 014435          177 SKGVILTHKNFIAASLMISAHQ------EL-------VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFD  241 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~  241 (424)
                      ||+|+++|+++...........      ..       ....+++++..+|++|..++. .++.++..|+++++.+  .++
T Consensus       178 PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~  256 (533)
T PRK07798        178 PKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW-AAFAALFSGQTVVLLPDVRFD  256 (533)
T ss_pred             CcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHH-HHHHHHhcCceEEEecCCCcC
Confidence            9999999999876543321111      00       002347899999999999996 7889999999999998  789


Q ss_pred             HHHHHHHHHHccceEEEechHHHHH-HHhccc-cccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCC
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILA-LAKNSL-VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA  319 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~-l~~~~~-~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  319 (424)
                      +..+++.++++++|++.++|..+.. +.+... .....++++|.+++||+++++.+.+++.+.+++..+++.||+||++.
T Consensus       257 ~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  336 (533)
T PRK07798        257 ADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGF  336 (533)
T ss_pred             HHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccc
Confidence            9999999999999999999865533 333322 23446789999999999999999999999988899999999999865


Q ss_pred             ceeecCCCCCccCCCccc--cccCCcEEEEeeCCCCccCCCCCc--eeEEEecCCcchhh----------------hhcc
Q 014435          320 PISLENPLVGVRRSGSAG--TLVAGVEAQIVSVDTLKPLPPNQL--GEIWVRGPNVTPVF----------------ELTV  379 (424)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G--~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~~~~~~~gy----------------~~~~  379 (424)
                      ........    .....|  .+.++..++|+| +++++++.|+.  |+++.. +.+..||                .+||
T Consensus       337 ~~~~~~~~----~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~~~-~~~~~gy~~~~~~t~~~f~~~~~~~~~  410 (533)
T PRK07798        337 GGSGTVAK----GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIARR-GHIPLGYYKDPEKTAETFPTIDGVRYA  410 (533)
T ss_pred             ccccCCCC----CCccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEEee-cCccccccCChhhhHHhhccCCCCceE
Confidence            44432211    112233  788899999999 67889999987  777654 5677777                1489


Q ss_pred             ccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          380 NCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       380 ~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|||+++++++|.+       | ++.+|++|+|.+||+++.++|.|.+++|+|
T Consensus       411 ~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~  463 (533)
T PRK07798        411 IPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVG  463 (533)
T ss_pred             EcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEe
Confidence            99999999999987       3 899999999999999999999999999875

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-47  Score=345.16  Aligned_cols=399  Identities=19%  Similarity=0.206  Sum_probs=316.5

Q ss_pred             eeecCCCCCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHH
Q 014435           11 IYRSLRPPLVLPS---DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE   87 (424)
Q Consensus        11 ~~~~~~~~~~~~~---~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~   87 (424)
                      .-.+.++++..++   .+||+|+.+.++++|+.|+.+|++.||.|+++|+|.+|++.++++++++|++...||.+...+.
T Consensus        88 rr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~  167 (649)
T KOG1179|consen   88 RRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLRGEP  167 (649)
T ss_pred             HhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccccch
Confidence            3446677776554   7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEcccchHHHhcCCCC----eEEEecCCCccccccccCCCcccchhhhhhccCCCC-C-CCCCCCCC
Q 014435           88 LSKQVKDSNPKLVITVPELWDKVKDLNLP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT-D-IPDVSVKQ  161 (424)
Q Consensus        88 i~~~l~~~~~~~ii~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~  161 (424)
                      +.|.++.++++++|++++..+.+.++...    .+-....+..      .......++...+......+ + ......+.
T Consensus       168 LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~------~~~~g~~~L~~~l~~~~~~~vp~~~~~~~~~  241 (649)
T KOG1179|consen  168 LLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPT------SVPDGIESLLAKLSAAPKHPVPVSTRSGLTF  241 (649)
T ss_pred             hhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCC------CCCchHHHHHHhhcccccCCCCcccCCCccc
Confidence            99999999999999999988877766221    1111111100      11223333333333322211 1 12334466


Q ss_pred             CCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCC
Q 014435          162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD  241 (424)
Q Consensus       162 ~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  241 (424)
                      .++++++|||||||.||+.+++|..+...+.......++...  |+++..+|++|..+....+..++..|+|+++-.+|+
T Consensus       242 ~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~--DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFS  319 (649)
T KOG1179|consen  242 RSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTAD--DVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFS  319 (649)
T ss_pred             cceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCcc--ceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccc
Confidence            789999999999999999999999988887766666666555  999999999999999989999999999999999999


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCce
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI  321 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~  321 (424)
                      ...+++...+|++|++.-.--+.+.|++.+......-.++|..+-.|  +.+++++.|.++|+..++.+.||+||...-.
T Consensus       320 AS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~  397 (649)
T KOG1179|consen  320 ASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNL  397 (649)
T ss_pred             hhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCccee
Confidence            99999999999999999999999999999887777777888766444  8899999999999878899999999965433


Q ss_pred             eecCCCCCccCCCccccc------cCCcEEEEeeCCCCcc----------CCCCCceeEEE--ecCCc---chhh-----
Q 014435          322 SLENPLVGVRRSGSAGTL------VAGVEAQIVSVDTLKP----------LPPNQLGEIWV--RGPNV---TPVF-----  375 (424)
Q Consensus       322 ~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~----------~~~g~~Gel~v--~~~~~---~~gy-----  375 (424)
                      ...     +.+.|.+|+.      +--+++-=+|++++++          +++||+|.++-  .....   +.||     
T Consensus       398 ~N~-----d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~  472 (649)
T KOG1179|consen  398 VNY-----DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKK  472 (649)
T ss_pred             eee-----cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchh
Confidence            322     2344444431      1112322234456654          58999997753  22333   6788     


Q ss_pred             --------------hhccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          376 --------------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 --------------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                                    |.+|.|||+-.+|+.|++       | ++..|+||+..|||++|.....+.||.|+|
T Consensus       473 ~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYG  543 (649)
T KOG1179|consen  473 ATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYG  543 (649)
T ss_pred             hhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEE
Confidence                          778999999999999998       4 999999999999999999999999999986

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.3e-40  Score=344.68  Aligned_cols=376  Identities=11%  Similarity=0.063  Sum_probs=275.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++.+||+|+.++++++|+.|.+.|+++||+|+|+++|+++|+++.+||+++|++.+|+++  +.+++.+++++++++++|
T Consensus       455 ~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVf  532 (1452)
T PTZ00297        455 SEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVF  532 (1452)
T ss_pred             ceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEE
Confidence            356999999999999999999999999999999999999999999999999999999975  467899999999999999


Q ss_pred             EcccchHHHhcCC---CCeEEEecCCCcccc-c-cccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEec---CCCC
Q 014435          102 TVPELWDKVKDLN---LPAVLLGSKDKVSSS-G-LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY---SSGT  173 (424)
Q Consensus       102 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---TSGt  173 (424)
                      ++.+....+....   .+.++.......... . .......+.+|++++..+............++|++.|+|   ||||
T Consensus       533 v~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGT  612 (1452)
T PTZ00297        533 ADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSAS  612 (1452)
T ss_pred             EchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCC
Confidence            9988777665442   233333321100000 0 000112356788888765421111223346788998885   9999


Q ss_pred             CCCcchhhhcHHHHHHHHHHHHhhhhh-ccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHc
Q 014435          174 TGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY  252 (424)
Q Consensus       174 TG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  252 (424)
                      ||.||||++||++++..+......... ....++++++++|++|+++.. ..+.++..|+++..   +++..+++.++++
T Consensus       613 TG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~-~~~~~l~~G~~I~~---~d~~~lledL~~~  688 (1452)
T PTZ00297        613 GDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV-FVLGLFAHGSAVAT---VDAAHLQRAFVKF  688 (1452)
T ss_pred             CcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH-HHHHHHHcCCEEEe---CCHHHHHHHHHHH
Confidence            999999999999999988776443211 123458999999999999964 66777899999874   4789999999999


Q ss_pred             cceEEEechHHHHHHHhccccc--------------------------cC----------------CCCCeeEEEecCCC
Q 014435          253 RVTVWWVVPPIILALAKNSLVR--------------------------KF----------------DISSLKLVGSGAAP  290 (424)
Q Consensus       253 ~~t~~~~~p~~~~~l~~~~~~~--------------------------~~----------------~~~~lr~~~~~g~~  290 (424)
                      +||+++++|.+++.+.+....+                          ..                --.++|.+++||+ 
T Consensus       689 rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga-  767 (1452)
T PTZ00297        689 QPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVS-  767 (1452)
T ss_pred             CCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCC-
Confidence            9999999999998764421000                          00                0147899988873 


Q ss_pred             CCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeC-CCCccCCCCCceeEEEecC
Q 014435          291 LGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV-DTLKPLPPNQLGEIWVRGP  369 (424)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~g~~Gel~v~~~  369 (424)
                        ++........  +++++.+||+||..   +.+.+.  ...  ..|.|+|++++||.+. +.+.   .+..|||++++.
T Consensus       768 --~~~l~~~l~~--~i~i~~g~glTE~~---~~~~~~--~~~--~~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr~~  833 (1452)
T PTZ00297        768 --EESTSFSLLE--HISVCYVPCLREVF---FLPSEG--VFC--VDGTPAPSLQVDLEPFDEPSD---GAGIGQLVLAKK  833 (1452)
T ss_pred             --ccccChHHhC--CceEEEecceEEee---eecCCC--Ccc--cCCeecCceEEEEcccccccC---CCCCCeEEEEEC
Confidence              2222233333  47889999999942   233332  222  2399999999999873 2222   134699999764


Q ss_pred             CcchhhhhccccCce-EEEecCCce-------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          370 NVTPVFELTVNCNLF-SYFRSNDHN-------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       370 ~~~~gy~~~~~TgD~-g~~~~~g~~-------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            ..+..|.+. +.|.+||.+       |  +..+|++|.|+.||+.+.++|.|.+++|+|
T Consensus       834 ------kdpe~T~e~~~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~G  892 (1452)
T PTZ00297        834 ------GEPRRTLPIAAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYA  892 (1452)
T ss_pred             ------CChHHHHHhhCcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEe
Confidence                  345566665 467788887       3  445999999999999999999999999987

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-35  Score=296.81  Aligned_cols=374  Identities=21%  Similarity=0.272  Sum_probs=295.0

Q ss_pred             cCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLVL-PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++.. ...+||+|+..+++++|+.|.+.|++++++|+++.+.++++++.++|++++|+.++|+++.++.+.+..++
T Consensus       241 p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l  320 (642)
T COG1020         241 PDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYIL  320 (642)
T ss_pred             CCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHH
Confidence            34434443 46799999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +..+++.+++..+..........    +                   ..+........ .........+++.++++||||
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~-~~~~~~~~~~~~~ayiiytsg  376 (642)
T COG1020         321 EDSRPTLLLTQAHLRVDDVGLPG----L-------------------ALDDALSEIPD-TDPIPQALLGDALAYIIYTSG  376 (642)
T ss_pred             hhcCccEEEeccccccccccCCc----c-------------------ccccccccCCc-cCcccccCCCCCeEEEEEccC
Confidence            99999999998433222111110    0                   00000000000 011112334588999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i  249 (424)
                      |||.||||..+|+++.............  ..+++++...++....+.. .++.++..|+++++.+.   .++..+.+.+
T Consensus       377 stg~Pkgv~~~h~~~~~~~~~~~~~~~~--~~~d~~l~~~s~~fD~~~~-~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~  453 (642)
T COG1020         377 STGQPKGVRIEHRALANLLNDAGARFGL--DADDRVLALASLSFDASVF-EIFGALLEGARLVLAPALLQVDPAALLELL  453 (642)
T ss_pred             CCCCCCCceecCHHHHHHHHHHHHhcCC--CcccEEeecCCcccchhHH-HHHHHHhCCCEEEecCccccCCHHHHHHHH
Confidence            9999999999999998855555444333  3347888888886666663 78899999999998864   6899999999


Q ss_pred             HHccceEEEechHHHHHHHhcccccc--CCCCCeeEEEecCCCCCHHHHHHHHHhCC-CCeEEecccCccCCCceeecCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQGYGMTETCAPISLENP  326 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~  326 (424)
                      +++++|.+..+|.++..+........  .....+|.+++||+.++..+.+++.+..+ ...+.+.||.||+.........
T Consensus       454 ~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~  533 (642)
T COG1020         454 EAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPI  533 (642)
T ss_pred             HHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEc
Confidence            99999999999999999887632222  12235999999999999999999988764 4789999999996554443222


Q ss_pred             CCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hh-ccccCceEEEecCCce
Q 014435          327 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------EL-TVNCNLFSYFRSNDHN  393 (424)
Q Consensus       327 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~-~~~TgD~g~~~~~g~~  393 (424)
                      ........++|+|+++..+.|.| +.++++|.|..||+++.|..+..||            .. +|+|||++++..+|.+
T Consensus       534 ~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~  612 (642)
T COG1020         534 SAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGAL  612 (642)
T ss_pred             ccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeE
Confidence            21111146899999999999999 7999999999999999999999999            33 7899999999999977


Q ss_pred             ------e--eEeeeeeeChhhHHHHHhcCC
Q 014435          394 ------D--FFCKLFQVAPAELEGLLVSHP  415 (424)
Q Consensus       394 ------d--i~~~G~~v~~~~iE~~l~~~p  415 (424)
                            |  +|++|++|.+.|||..+.++|
T Consensus       613 e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         613 EYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             EEeccccceeEeceEecCcHHHHHHHhcCC
Confidence                  5  999999999999999998876

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-34  Score=269.72  Aligned_cols=233  Identities=23%  Similarity=0.309  Sum_probs=195.4

Q ss_pred             CCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEe--
Q 014435          159 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--  236 (424)
Q Consensus       159 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~--  236 (424)
                      ..++|+++++|||||||.||+|.++|+++...........    ...++++..+|++|.+|+. .++.++..|+++++  
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~----~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~  106 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL----GGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVELD  106 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc----CCCCeEEEECChHHHHHHH-HHHHHHHcCCeEEecC
Confidence            3468999999999999999999999999988765543322    1337889999999999985 66778888888877  


Q ss_pred             -cCCCCHHHHHHHHHHcc--ceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEeccc
Q 014435          237 -MGKFDIEMALRAIEKYR--VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  313 (424)
Q Consensus       237 -~~~~~~~~~~~~i~~~~--~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG  313 (424)
                       ...+++..+.+.+++++  .++...+|..+..++..... ...++++|.+++||+++++++.+++.+.  ++++++.||
T Consensus       107 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG  183 (358)
T PRK07824        107 VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYG  183 (358)
T ss_pred             cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEeccc
Confidence             34578999999999998  56777788888777665432 2357899999999999999999998864  799999999


Q ss_pred             CccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-----------hhccccC
Q 014435          314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-----------ELTVNCN  382 (424)
Q Consensus       314 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-----------~~~~~Tg  382 (424)
                      +||++..+.            ..|.|++++++++.+            |||+++|+.++.||           ++||+||
T Consensus       184 ~TE~~~~~~------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~~~~~~g~~~TG  239 (358)
T PRK07824        184 MSETSGGCV------------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPDPFAEPGWFRTD  239 (358)
T ss_pred             CCccCCCcC------------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccccccCCCceecc
Confidence            999875432            248899999999854            89999999999999           4599999


Q ss_pred             ceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          383 LFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       383 D~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+|++ ++|.+       | ++.+|++|+|.+||++|.+||+|.+|+|+|
T Consensus       240 Dl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~  288 (358)
T PRK07824        240 DLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFG  288 (358)
T ss_pred             cEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            99999 77766       3 899999999999999999999999999985

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=9.6e-32  Score=249.20  Aligned_cols=227  Identities=17%  Similarity=0.129  Sum_probs=180.2

Q ss_pred             CCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCC
Q 014435          162 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD  241 (424)
Q Consensus       162 ~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  241 (424)
                      +..++++|||||||.||+|.++|+++...+..............+++++.+|++|.+|+...++.++..|+++++.+.++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            44689999999999999999999999887766655444433333689999999999998767888899999999988888


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCce
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI  321 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~  321 (424)
                      +..+++.++..  |+++++|.+++.+.+..    .+++++|. ++||+++++++++.+++. +...+++.||+||+++++
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~  246 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIG  246 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccc
Confidence            88888877643  89999999999997653    34677876 678999999999999886 234799999999988755


Q ss_pred             eecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecCCce-------e
Q 014435          322 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       322 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      ....       ++..|.+.|+.++++ +  ++..           .|+      ..||+|||+|+++++|++       |
T Consensus       247 ~~~~-------~~~~~~~~p~~~~~~-~--~~~~-----------~g~------~~~~~tgD~g~~d~~G~l~i~GR~dd  299 (386)
T TIGR02372       247 LREA-------PDDPFRLLPDLACFA-D--TLSS-----------AGL------ARRLDLQDRLAWDKDGGFTILGRKDE  299 (386)
T ss_pred             cccC-------CCCCcccCCCccccC-C--CccC-----------CCc------cceeecCceEEEcCCCcEEEecccCC
Confidence            4321       224567888876654 1  2110           122      247899999999999988       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                       |+++|++|+|.+||++|.+||+|.+|+|+
T Consensus       300 ~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~  329 (386)
T TIGR02372       300 ILQVGGVNVSPGHVRDILERNPRVRAAAVR  329 (386)
T ss_pred             EEEECCEEEcHHHHHHHHHcCCCceEEEEE
Confidence             99999999999999999999999999875

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=4.7e-31  Score=250.67  Aligned_cols=254  Identities=18%  Similarity=0.197  Sum_probs=191.4

Q ss_pred             CCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhh-hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC
Q 014435          160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG  238 (424)
Q Consensus       160 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~  238 (424)
                      ..++++.+++||||||.||++.++|.++............ .....++++++..+..+..+.....+..+..|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            4567888999999999999999999998765443332221 122334777776554433333334556778899998877


Q ss_pred             CCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCC--CCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCcc
Q 014435          239 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  316 (424)
Q Consensus       239 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~--~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE  316 (424)
                      ..++..+++.|+++++|+++++|+++..|++.....+.+  ..++|.++++|+++++++.+.+++.| ++++++.||+||
T Consensus       153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE  231 (422)
T TIGR02155       153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSE  231 (422)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchh
Confidence            778899999999999999999999999988754433322  35899999999999999999999998 699999999999


Q ss_pred             CCC-ceeecCCCCCccCCCcccccc--CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecC-C-
Q 014435          317 TCA-PISLENPLVGVRRSGSAGTLV--AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN-D-  391 (424)
Q Consensus       317 ~~~-~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~-g-  391 (424)
                      +++ .+...+..   .   ..|.++  +++.++|+|+++++++++|+.|||++++..-......||+|||+++++++ | 
T Consensus       232 ~~~~~~~~~~~~---~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~~~~~p~~ry~TGDl~~~~~~~Gr  305 (422)
T TIGR02155       232 VIGPGVAMECVE---T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLTKEALPVIRYRTRDLTRLLPGTAR  305 (422)
T ss_pred             hcCCceeecccc---c---CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCCccccceeeEEcCcEEEEECCCCC
Confidence            853 22222111   1   112233  45778899977899999999999999986432222679999999999875 4 


Q ss_pred             ------ce-----e-eEeeeeeeChhhHHHHHhcCCCcccc
Q 014435          392 ------HN-----D-FFCKLFQVAPAELEGLLVSHPEILDA  420 (424)
Q Consensus       392 ------~~-----d-i~~~G~~v~~~~iE~~l~~~p~V~~a  420 (424)
                            .+     | ++.+|.+|+|.+||.+|.+||+|...
T Consensus       306 ~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~  346 (422)
T TIGR02155       306 TMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPH  346 (422)
T ss_pred             cccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCC
Confidence                  12     4 88999999999999999999999843

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.96  E-value=3.9e-27  Score=226.48  Aligned_cols=403  Identities=16%  Similarity=0.191  Sum_probs=282.6

Q ss_pred             CCCCceeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCC
Q 014435            6 YGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT   84 (424)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~   84 (424)
                      -+++..|--.+......+++||++|++++.+++.+|... -+++||.|++++|+++|++++++||+.+|++++|++|...
T Consensus       783 tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~  862 (1363)
T KOG3628|consen  783 TPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHA  862 (1363)
T ss_pred             CCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccH
Confidence            344555555555555777899999999999999999976 4899999999999999999999999999999999998533


Q ss_pred             ------HHHHHHHHHhcCCeEEEEcccchHHHhcCCC---------CeEEEecCCCccccccccCCCcccchhhhhhccC
Q 014435           85 ------VSELSKQVKDSNPKLVITVPELWDKVKDLNL---------PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  149 (424)
Q Consensus        85 ------~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (424)
                            ...+..+++.++++.|+++......++.-..         ..++...+          ....+.....  +...
T Consensus       863 s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~----------~~~t~~k~~~--~~~k  930 (1363)
T KOG3628|consen  863 SNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPK----------LPETIRKRKK--NIKK  930 (1363)
T ss_pred             HhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccc----------cchhhhhhhh--hhhc
Confidence                  3567899999999999999876665544221         11111000          0000111000  1111


Q ss_pred             CCCCCCCCCCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhh
Q 014435          150 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  229 (424)
Q Consensus       150 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  229 (424)
                      .....++....++.+|++-+.--++|.--++.++|.++++.++.......+...  ..++...+.+...|+..+.+..++
T Consensus       931 ~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~--rpl~~~~~~~sGlgf~~wcLlgVy 1008 (1363)
T KOG3628|consen  931 LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKS--RPLLGCSSPYSGLGFNHWCLLGVY 1008 (1363)
T ss_pred             cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccC--CceEEEecCccchhHHHHHHHHHH
Confidence            112333444567889999888888999999999999999999998888877655  667777777778888888999999


Q ss_pred             cCceEEecCC----CCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCe------eEEEecCCCCCHHHHHHH
Q 014435          230 KGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL------KLVGSGAAPLGKELMEDC  299 (424)
Q Consensus       230 ~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l------r~~~~~g~~~~~~~~~~~  299 (424)
                      .|...++.++    -++.-+++.++++++.-++.+=..++...+.......+++..      ..++..-++....+.+.|
T Consensus      1009 sGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf 1088 (1363)
T KOG3628|consen 1009 SGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASF 1088 (1363)
T ss_pred             cCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHHH
Confidence            9999777765    488999999999999998888777776655433222222211      333444555666666666


Q ss_pred             HHhCCCC-----eEEecccCccCCCceeecCCC-------C-------------------CccCCCccccccCCcEEEEe
Q 014435          300 QKNIPGA-----TIFQGYGMTETCAPISLENPL-------V-------------------GVRRSGSAGTLVAGVEAQIV  348 (424)
Q Consensus       300 ~~~~~~~-----~~~~~yG~tE~~~~~~~~~~~-------~-------------------~~~~~~~~G~~~~~~~~~i~  348 (424)
                      .+.|...     .+.-.|+.-= ...++.+...       +                   ........|...+++++.|+
T Consensus      1089 ~klfa~igLsp~avStsys~r~-Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Iv 1167 (1363)
T KOG3628|consen 1089 KKLFAAIGLSPRAVSTSYSSRV-NPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIV 1167 (1363)
T ss_pred             HHHHHHcCCChhhhcccccccC-ChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEe
Confidence            6655311     1222233221 1111111000       0                   00111134777889999999


Q ss_pred             eCCCCccCCCCCceeEEEecCCcchhh-----------------------hhccccCceEEEecC---------------
Q 014435          349 SVDTLKPLPPNQLGEIWVRGPNVTPVF-----------------------ELTVNCNLFSYFRSN---------------  390 (424)
Q Consensus       349 d~~~~~~~~~g~~Gel~v~~~~~~~gy-----------------------~~~~~TgD~g~~~~~---------------  390 (424)
                      +||+..++.+|+.||||+.|.+-+.+|                       ..|-||||+|+++.-               
T Consensus      1168 nPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyV 1247 (1363)
T KOG3628|consen 1168 NPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYV 1247 (1363)
T ss_pred             CCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEE
Confidence            999999999999999999998765544                       445599999997532               


Q ss_pred             -Ccee--eEeeeeeeChhhHHHHH-hcCCCcccceec
Q 014435          391 -DHND--FFCKLFQVAPAELEGLL-VSHPEILDAVVI  423 (424)
Q Consensus       391 -g~~d--i~~~G~~v~~~~iE~~l-~~~p~V~~a~v~  423 (424)
                       |.+|  +.++|-+.+|.+||..+ +.||.|-+|+||
T Consensus      1248 lG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF 1284 (1363)
T KOG3628|consen 1248 LGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVF 1284 (1363)
T ss_pred             eecccceeeecCcccCcchHHHHHHHhcccccceeeE
Confidence             1223  88999999999999999 559999999987

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.95  E-value=8.4e-27  Score=221.64  Aligned_cols=247  Identities=15%  Similarity=0.117  Sum_probs=182.0

Q ss_pred             CCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhh-hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC
Q 014435          160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG  238 (424)
Q Consensus       160 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~  238 (424)
                      ..++++.+.+||||||.||++.+||+++............ ..-...++++...+..+..+.....+.+...|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            4568889999999999999999999998776554433321 112334788888887776665444566778888876543


Q ss_pred             CCCHHHHHHHHHHccceEEEechHHHHHHHhccccccC--CCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCcc
Q 014435          239 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  316 (424)
Q Consensus       239 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE  316 (424)
                      .  ....++.++++++|++.++|+.+..|.+.....+.  ...++|.+++||+++++++.+.+.+.| ++++++.||+||
T Consensus       164 ~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE  240 (445)
T TIGR03335       164 K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTE  240 (445)
T ss_pred             c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhh
Confidence            2  34678999999999999999988877765433322  246899999999999999999999988 699999999999


Q ss_pred             CCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcc---hhh-hhccccCceEEEec-C-
Q 014435          317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT---PVF-ELTVNCNLFSYFRS-N-  390 (424)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~---~gy-~~~~~TgD~g~~~~-~-  390 (424)
                      ++. +..+. .     ......+.+.+.++|+|+++++++++|+.|||++++-.-.   .++ --.|+|||++++.. + 
T Consensus       241 ~~~-~~~c~-~-----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r~~~PliRYrtgD~~~~~~~~~  313 (445)
T TIGR03335       241 GTM-CGECQ-A-----VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGERCGSLLINYDTEDTTVVISRDR  313 (445)
T ss_pred             hhh-eEEec-C-----CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCccCCceEEEeecCceEEEecCCC
Confidence            752 22111 1     1112233356789999988888999999999999975421   112 34689999998732 2 


Q ss_pred             ---C----------cee--eEeeeeeeChhhHHHHHhcCCC
Q 014435          391 ---D----------HND--FFCKLFQVAPAELEGLLVSHPE  416 (424)
Q Consensus       391 ---g----------~~d--i~~~G~~v~~~~iE~~l~~~p~  416 (424)
                         |          +.|  ++++|.+|+|.+||++|.++++
T Consensus       314 C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~  354 (445)
T TIGR03335       314 CPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQREN  354 (445)
T ss_pred             CCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCC
Confidence               2          223  8889999999999999999543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.94  E-value=4.9e-25  Score=189.47  Aligned_cols=200  Identities=19%  Similarity=0.156  Sum_probs=147.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           24 DPSFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~-~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|++++|+|             .++++++++
T Consensus        27 ~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~   93 (227)
T TIGR03089        27 ELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG-------------DPDADVVVT   93 (227)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEe
Confidence            59999999999999999998 7999999999999999999999999999999999996             678999999


Q ss_pred             cccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhh
Q 014435          103 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL  182 (424)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  182 (424)
                      +++....... ......+........... ....+..++.+....... ...+.....++|++.++||||+         
T Consensus        94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~a~l~yTsg~---------  161 (227)
T TIGR03089        94 GPDRLAAAAG-SGEVVALSLDPLGRRVAG-ELPPGVIDFAPEVRVHGD-QFAPYEPPDATAPALVAGGGEW---------  161 (227)
T ss_pred             Ccchhhhccc-CCceEEEeccccccCCCC-CCCCcccchhhhhhccCC-CCCCCCCCCCCcceeeeccccc---------
Confidence            9887776542 222222211000000000 011222355554442211 1111113456899999999986         


Q ss_pred             cHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccce
Q 014435          183 THKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  255 (424)
Q Consensus       183 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  255 (424)
                      +|.++....    ...+.  ..+|+++ .+|++|.+|+...++.++..|+++++.++|++..+++.|+++|+|
T Consensus       162 ~~~~~~~~~----~~~~l--~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       162 TGAELVAAA----RAAGL--PPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             cHHHHHHHH----hhcCC--CCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            555655543    22223  3449999 999999999987899999999999999999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.92  E-value=1.6e-23  Score=189.44  Aligned_cols=253  Identities=22%  Similarity=0.230  Sum_probs=192.6

Q ss_pred             CCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCC-cEEEEecc-hHHHHHHHHHHHHHhhcCceEEe
Q 014435          159 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD-HVVLCVLP-MFHVFGLSVILYDQLQKGNCVVS  236 (424)
Q Consensus       159 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p-~~~~~g~~~~~~~~l~~G~~~~~  236 (424)
                      ...++...|-.||||||+|+.+.+++..+...+..+...+....... |++....- ..+..|+. ..+++-..|++++-
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~-~~~ga~rig~~vip  165 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLG-LHYGAERIGATVIP  165 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCch-hHHHHHhhCEEEEc
Confidence            34466677889999999999999999998888777766665543332 55544333 11122222 33444557888877


Q ss_pred             cCCCCHHHHHHHHHHccceEEEechHHHHHHHhcccccc--CCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccC
Q 014435          237 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  314 (424)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~  314 (424)
                      ..+-+.+..+++++++++|++.++|+.+..|.+.....+  ..-.++|.+++|+|++++++++.+.+.| |+..++.||+
T Consensus       166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGl  244 (438)
T COG1541         166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGL  244 (438)
T ss_pred             cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeecccc
Confidence            666788999999999999999999999999988776663  2335899999999999999999999999 7999999999


Q ss_pred             ccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecC----
Q 014435          315 TETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN----  390 (424)
Q Consensus       315 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~----  390 (424)
                      ||..+.....+..     ......+-+...++|+||++++.+++|+.|||+++.-.-..----.|+|||+..+.++    
T Consensus       245 tE~~g~g~~eC~~-----~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~~~~~PlIRYrtgDit~i~~~~C~c  319 (438)
T COG1541         245 TEGFGPGAGECTE-----RNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLTKEGMPLIRYRTGDITVILSDPCGC  319 (438)
T ss_pred             ccccCCccccccc-----ccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEeccccCcceEEEEcCCeeEecccCCCC
Confidence            9986664222221     1123445577889999999999999999999999874311111345799999998773    


Q ss_pred             -----------Ccee--eEeeeeeeChhhHHHHHhcCCCcc
Q 014435          391 -----------DHND--FFCKLFQVAPAELEGLLVSHPEIL  418 (424)
Q Consensus       391 -----------g~~d--i~~~G~~v~~~~iE~~l~~~p~V~  418 (424)
                                 |+.|  +.+.|.+|+|..||.+|.+.+.+.
T Consensus       320 Gr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~  360 (438)
T COG1541         320 GRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVT  360 (438)
T ss_pred             CCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCC
Confidence                       2333  888999999999999999999987

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.84  E-value=3e-20  Score=184.55  Aligned_cols=390  Identities=15%  Similarity=0.064  Sum_probs=234.0

Q ss_pred             cCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCC----HHHHH
Q 014435           14 SLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT----VSELS   89 (424)
Q Consensus        14 ~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~i~   89 (424)
                      +..+.-..-++.||++....++.+++.|...|..+|+.|++++..+.++++..++.+++|..+++++|.++    ++.+.
T Consensus        59 p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~  138 (1032)
T KOG1178|consen   59 PTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLM  138 (1032)
T ss_pred             ecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHH
Confidence            33333344567899999999999999999999999999999999999999999999999999999999999    22221


Q ss_pred             HHHHhcC-CeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCC-CCCCCCCCCCCCEEEE
Q 014435           90 KQVKDSN-PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDVSVKQTDAAAL  167 (424)
Q Consensus        90 ~~l~~~~-~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  167 (424)
                      .+..... ...-+........+......                 ....+....+.++.-... ....-....++..+.+
T Consensus       139 ~ia~~~~s~~~~i~~~l~i~~~~~~~~~-----------------~~~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l  201 (1032)
T KOG1178|consen  139 RIAHFLTSVELEIVRRLNIIDILLNSLF-----------------PKLSVETIADSFQMVLHNEDTREIRVGGNDSTALL  201 (1032)
T ss_pred             hhhhhheeccceehhhhhhHHHHhhccc-----------------cccchhhccchhhhhhccCCCcceeeecccccceE
Confidence            1111110 00111111000000000000                 000000011111111110 1111223456778999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEM  244 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~  244 (424)
                      .||||+||.||+|..+|..+.....+........  .++++-.....+............|..|..+..+..   -++.+
T Consensus       202 ~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t--~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~  279 (1032)
T KOG1178|consen  202 SFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPT--GSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQ  279 (1032)
T ss_pred             eecccccccccccchhHHHHHhhhhhccccCCcC--ccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhh
Confidence            9999999999999999999988766554443222  224331111111111221233344555655555533   24799


Q ss_pred             HHHHHHHccceEEEechHHHHHHHhccccc-------------cCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEec
Q 014435          245 ALRAIEKYRVTVWWVVPPIILALAKNSLVR-------------KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  311 (424)
Q Consensus       245 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-------------~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (424)
                      +.+.+++++++..+.+|++.++++......             ....+.||....+|++....+...+.+.+...-...-
T Consensus       280 l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~  359 (1032)
T KOG1178|consen  280 LASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLP  359 (1032)
T ss_pred             HHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeec
Confidence            999999999999999999987776643321             1123478999999999999988866665542223333


Q ss_pred             ccCccCCCceeecCCCCCc--cCCCccccccCC-------cEEEEeeCCCCccCCCCCc----eeEEEecCCcchhh---
Q 014435          312 YGMTETCAPISLENPLVGV--RRSGSAGTLVAG-------VEAQIVSVDTLKPLPPNQL----GEIWVRGPNVTPVF---  375 (424)
Q Consensus       312 yG~tE~~~~~~~~~~~~~~--~~~~~~G~~~~~-------~~~~i~d~~~~~~~~~g~~----Gel~v~~~~~~~gy---  375 (424)
                      |+.++..+...........  .....+..+..+       .-..+.. ..+.+.+.+..    |.-+..+.++..||   
T Consensus       360 y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g~~~~  438 (1032)
T KOG1178|consen  360 YLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDGYSTP  438 (1032)
T ss_pred             ccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeeccccch
Confidence            8888876655542222110  000011111111       1122222 23333332222    22223334445554   


Q ss_pred             --------------hhccccCceEEEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceec
Q 014435          376 --------------ELTVNCNLFSYFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       376 --------------~~~~~TgD~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~  423 (424)
                                    +..|+|||+|+.-.+|.+      |  ++.+|+++...+|+.++..||.|+++.+.
T Consensus       439 ~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl  508 (1032)
T KOG1178|consen  439 ENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITL  508 (1032)
T ss_pred             hhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhhee
Confidence                          455699999998888766      4  99999999999999999999999998764

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.69  E-value=6.8e-16  Score=149.96  Aligned_cols=402  Identities=16%  Similarity=0.189  Sum_probs=262.4

Q ss_pred             CCCCCCCceeecCCCCCCCCCCCcHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCCC--ccHHHHHHHHHHhCCeEecC
Q 014435            3 KSGYGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSH-SFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTA   79 (424)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~-~L~~~gi~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l   79 (424)
                      ||+-+..+++-+++.-   ...+||..+..++.++|+ .|-+-|++++|+|.+++..+  .++++..++|..+|..++|+
T Consensus       106 hs~~~ta~i~id~kgk---~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~  182 (1363)
T KOG3628|consen  106 HSATSTAHICIDKKGK---ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPL  182 (1363)
T ss_pred             CCCCCceEEEEcCCCc---eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccc
Confidence            4444455555544441   557999999999999999 67777999999999988776  99999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCC
Q 014435           80 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV  159 (424)
Q Consensus        80 ~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (424)
                      .+..+.+++..+++..+.+++++....+..+.....+.-.             .....+....++...... +....+..
T Consensus       183 ~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~-------------~k~v~~w~t~~~k~~~~~-~k~~~P~~  248 (1363)
T KOG3628|consen  183 SELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSL-------------AKAVAWWKTNDFKGNYTK-DKIKKPRM  248 (1363)
T ss_pred             hhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccH-------------HHHHHhhhcccccceeeh-hhccCCce
Confidence            9999999999999999999999988776665543311000             000000011111100000 11111112


Q ss_pred             CCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhh------------------hccCCCcEEEEecchHHHHHHH
Q 014435          160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE------------------LVGELDHVVLCVLPMFHVFGLS  221 (424)
Q Consensus       160 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~p~~~~~g~~  221 (424)
                      .-. ..+|-||.+++|.--+++.+|+ +..+.+.+.....                  ..-..++.++.........|+.
T Consensus       249 ~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGli  326 (1363)
T KOG3628|consen  249 QLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLI  326 (1363)
T ss_pred             eee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchh
Confidence            222 6889999999998888888876 3332222111100                  1112236667777778888998


Q ss_pred             HHHHHHhhcCceEEecCC---CCHHHHHHHHHHccceEEEechHHHHHHHhc-----------cccccCCCCCeeEEEec
Q 014435          222 VILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKN-----------SLVRKFDISSLKLVGSG  287 (424)
Q Consensus       222 ~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-----------~~~~~~~~~~lr~~~~~  287 (424)
                      ..++.+++.|.|.+..++   ..|..+.+++-+++.+++..--..+.+....           .+.+..+++++|.+++.
T Consensus       327 lGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vt  406 (1363)
T KOG3628|consen  327 LGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVT  406 (1363)
T ss_pred             hhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEe
Confidence            889999999999999987   6788999999999999987654333332211           11122468899999998


Q ss_pred             CCCCCHHHHHHHHHhC----CC--Ce---------------EEecccCccCCCceeecCCCCC-----------------
Q 014435          288 AAPLGKELMEDCQKNI----PG--AT---------------IFQGYGMTETCAPISLENPLVG-----------------  329 (424)
Q Consensus       288 g~~~~~~~~~~~~~~~----~~--~~---------------~~~~yG~tE~~~~~~~~~~~~~-----------------  329 (424)
                      -..+..+..+-..+.+    +.  .+               ....=+++|.+...-..+....                 
T Consensus       407 c~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~  486 (1363)
T KOG3628|consen  407 CTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLN  486 (1363)
T ss_pred             eeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccc
Confidence            8888876655444432    10  11               1112233454433222222110                 


Q ss_pred             -----------ccCCCccccccCC-cEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------h--------------
Q 014435          330 -----------VRRSGSAGTLVAG-VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------E--------------  376 (424)
Q Consensus       330 -----------~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------~--------------  376 (424)
                                 ......+|+..++ +.+.++++++.+.+.++++|||||.++++...|       +              
T Consensus       487 ~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~  566 (1363)
T KOG3628|consen  487 EVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKP  566 (1363)
T ss_pred             eEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCC
Confidence                       1111135665555 566788888899999999999999999998888       1              


Q ss_pred             ----hccccCceEEEecCCce------e--eEeeeeeeCh----------hhHHHHHhcCCCcccceec
Q 014435          377 ----LTVNCNLFSYFRSNDHN------D--FFCKLFQVAP----------AELEGLLVSHPEILDAVVI  423 (424)
Q Consensus       377 ----~~~~TgD~g~~~~~g~~------d--i~~~G~~v~~----------~~iE~~l~~~p~V~~a~v~  423 (424)
                          .+.|||-+|++++++.+      |  ....|...+.          +.++.+++..+.|.++++|
T Consensus       567 ~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf  635 (1363)
T KOG3628|consen  567 PSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAF  635 (1363)
T ss_pred             CccchhhhhcceeeeeCCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeee
Confidence                12299999999998876      3  3344544333          3456677788888888876

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.62  E-value=5.9e-14  Score=130.89  Aligned_cols=232  Identities=15%  Similarity=0.022  Sum_probs=142.9

Q ss_pred             EEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhh-ccCCCcEEEEe--cchHHHHHHHHHHHHHhhcCce-EEecC-C
Q 014435          165 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCV--LPMFHVFGLSVILYDQLQKGNC-VVSMG-K  239 (424)
Q Consensus       165 ~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~p~~~~~g~~~~~~~~l~~G~~-~~~~~-~  239 (424)
                      ..+..||||||.|-.+..+................. .....+++...  .+. +.+.       .+..... +-..+ .
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly~-------~~~~~~~~~~~~~l~  173 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLYQ-------SVNNRWISLDFFDLL  173 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHHH-------HHHhccceeeecCCC
Confidence            556779999999999988888664443322221111 11111333322  222 2121       1111111 11111 1


Q ss_pred             CCHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCC
Q 014435          240 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA  319 (424)
Q Consensus       240 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  319 (424)
                      .+.+.+++.|++++|+++.++|+.+..|++.....+.+ .++|.++++||.+++...+.+++.| |+++++.||+|| |.
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~  250 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GF  250 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hh
Confidence            46899999999999999999999999999865544433 4789999999999999999999999 699999999999 54


Q ss_pred             ceeecCCCCCccCCCccccccCCcEEE--EeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecC----C--
Q 014435          320 PISLENPLVGVRRSGSAGTLVAGVEAQ--IVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN----D--  391 (424)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~~~~~~~--i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~----g--  391 (424)
                      ++..+ ..      +....--..+.++  ++|+ +++       ++.++++-.-..----.|+|||++.+.++    |  
T Consensus       251 la~eC-~~------g~lHl~ed~~~vE~~ivD~-~~~-------~~~ViT~L~n~~~PlIRYrtGD~~~~~~~~C~CGr~  315 (430)
T TIGR02304       251 LASTC-RC------GTLHLNEDLVHIEKQYLDE-HKR-------FVPIITDFTRTTQPIVRYRLNDILVESEQPCSCGSA  315 (430)
T ss_pred             eEEec-CC------CCEEEccccEEEEeeEECC-CCc-------eEEEEecCCCccceEEeeeCCCEEEeCCCCCCCCCc
Confidence            43322 11      2222222334444  7884 443       34466653211111345799999887543    2  


Q ss_pred             ---------ce-e-eE---eeeee--eChhhHHHHH-hcCCCccccee
Q 014435          392 ---------HN-D-FF---CKLFQ--VAPAELEGLL-VSHPEILDAVV  422 (424)
Q Consensus       392 ---------~~-d-i~---~~G~~--v~~~~iE~~l-~~~p~V~~a~v  422 (424)
                               +. | +.   .+|..  |+|..++.++ ...++|.+.-+
T Consensus       316 ~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi  363 (430)
T TIGR02304       316 TMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRV  363 (430)
T ss_pred             ccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEE
Confidence                     22 3 43   24544  5999998885 45788877644

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.25  E-value=7.1e-10  Score=101.33  Aligned_cols=219  Identities=17%  Similarity=0.148  Sum_probs=133.9

Q ss_pred             CCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccC---CCcEEEEecchHHHH-HH---HHHHHHHhhcCce
Q 014435          161 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---LDHVVLCVLPMFHVF-GL---SVILYDQLQKGNC  233 (424)
Q Consensus       161 ~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~-g~---~~~~~~~l~~G~~  233 (424)
                      ++++..++.||||||.|--+.+.+..+......+....+....   ..-.++...|..... .+   ....+..+..+..
T Consensus        88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~  167 (365)
T PF04443_consen   88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR  167 (365)
T ss_pred             hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence            5667788999999999866777666555554444333331111   112333333332111 11   1122333445555


Q ss_pred             EEecC-CCCHHHHHHHHH----HccceEEEechHHHHHHHhccccccC--CCC-CeeEEEecC------CCCC-HHHHHH
Q 014435          234 VVSMG-KFDIEMALRAIE----KYRVTVWWVVPPIILALAKNSLVRKF--DIS-SLKLVGSGA------APLG-KELMED  298 (424)
Q Consensus       234 ~~~~~-~~~~~~~~~~i~----~~~~t~~~~~p~~~~~l~~~~~~~~~--~~~-~lr~~~~~g------~~~~-~~~~~~  298 (424)
                      ..+.. .++.+.++..+.    +.++..++++|.++..++......+.  .++ ..+.+-.||      +.++ .++.+.
T Consensus       168 ~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~  247 (365)
T PF04443_consen  168 FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYAR  247 (365)
T ss_pred             eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHH
Confidence            44432 367777777665    45789999999987777665443332  333 455666665      4565 577788


Q ss_pred             HHHhCCC---CeEEecccCccCCCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh
Q 014435          299 CQKNIPG---ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF  375 (424)
Q Consensus       299 ~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy  375 (424)
                      +.+.|+.   ..+++.|||||.....+.....         ..+.|-- +.|.|+++.++++.|+.|-|.+-.+... .|
T Consensus       248 l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~---------~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s~  316 (365)
T PF04443_consen  248 LQEVFGVIPIENIYDMYGMTELNSQAYECGHG---------HFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT-SY  316 (365)
T ss_pred             HHHHHCCCCHHHeeeeeeccccchhheeCCCC---------cccCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc-CC
Confidence            8887842   3899999999976544432111         1122222 7777999999999999999998877543 34


Q ss_pred             hhccccCceEEEecC
Q 014435          376 ELTVNCNLFSYFRSN  390 (424)
Q Consensus       376 ~~~~~TgD~g~~~~~  390 (424)
                      -+.+-|.|+|.+..+
T Consensus       317 p~~IlTeDlGvl~~~  331 (365)
T PF04443_consen  317 PGFILTEDLGVLHGD  331 (365)
T ss_pred             CcEEEEcceeeecCC
Confidence            344789999987664

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.60  E-value=3e-08  Score=90.81  Aligned_cols=47  Identities=19%  Similarity=0.102  Sum_probs=42.7

Q ss_pred             hhccccCceEEE-ecCCce---e-eEeee---eeeChhhHHHHHhcCCCcccceecC
Q 014435          376 ELTVNCNLFSYF-RSNDHN---D-FFCKL---FQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       376 ~~~~~TgD~g~~-~~~g~~---d-i~~~G---~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++||+|||+|++ |++|++   + .+ +|   ++|+|. ||++|.+||+|.||+|+|
T Consensus       208 dgW~~TGDlg~~~d~dG~l~~~gR~~-~G~~i~nV~p~-IE~~L~~hp~V~eaaVvg  262 (365)
T PRK09188        208 RIWLATGKKVYNFITRGLFSWSDGEG-TGDRIDNEAPA-IQAALKSDPAVSDVAIAL  262 (365)
T ss_pred             CcEEeCCCEEEEEcCCCeEEEEecCc-CCcCceeeCHH-HHHHHHhCCCccEEEEEE
Confidence            789999999998 699988   3 55 77   799999 999999999999999986

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.65  E-value=0.00011  Score=71.57  Aligned_cols=126  Identities=13%  Similarity=0.043  Sum_probs=69.1

Q ss_pred             CCCeeEEEecCCCCCHHHHHHHHHhCCCCeEE-ecccCccCCCceeecCCCCCccCCCccccccCC-cEEEEeeCCC---
Q 014435          278 ISSLKLVGSGAAPLGKELMEDCQKNIPGATIF-QGYGMTETCAPISLENPLVGVRRSGSAGTLVAG-VEAQIVSVDT---  352 (424)
Q Consensus       278 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~---  352 (424)
                      .++|+.+.+.+..-.....+++++.+++..++ ..|++||+ .+.....+.    .  ..+...++ .-.+-++.++   
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~~~~----~--~~~~l~~~~~ffEFip~~~~~~  338 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPLDPE----D--PGYVLAPDSGFFEFIPVDEDEQ  338 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES-CC----C----EEE-TTSSEEEEEE-STT--
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEecCCC----C--CceEeecCCeEEEEEeccCCcc
Confidence            68999776666555567778888888775554 57999994 333322111    1  11222222 1334444322   


Q ss_pred             -----C-----ccCCCCCceeEEEecCCcchhhhhccccCceEEEec--CC--ce------e--eEeeeeeeChhhHHHH
Q 014435          353 -----L-----KPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS--ND--HN------D--FFCKLFQVAPAELEGL  410 (424)
Q Consensus       353 -----~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~--~g--~~------d--i~~~G~~v~~~~iE~~  410 (424)
                           .     ..+..|+..||.++..+-    --.|+.||+.++..  ++  .+      +  +.+.|++++-.+|+++
T Consensus       339 ~~~~~~~~l~~~ele~G~~YelviTt~~G----LyRY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~a  414 (528)
T PF03321_consen  339 NPSEQPKTLLLHELEVGEEYELVITTNSG----LYRYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEA  414 (528)
T ss_dssp             -----SSSEEGGG--TT-EEEEEEESTTS-----SSEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHH
T ss_pred             cccCCCceecHHHhcCCCeEEEEEecccc----eeeeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHH
Confidence                 2     235788999999987641    12469999998742  22  12      2  7789999999999999


Q ss_pred             HhcC
Q 014435          411 LVSH  414 (424)
Q Consensus       411 l~~~  414 (424)
                      +.+.
T Consensus       415 v~~~  418 (528)
T PF03321_consen  415 VARA  418 (528)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9664

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.36  E-value=0.0091  Score=58.19  Aligned_cols=128  Identities=13%  Similarity=0.013  Sum_probs=76.3

Q ss_pred             CCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEec-ccCccCCCceeecCCCCCccCCCcc-ccccCCcE-EEEeeCC--C
Q 014435          278 ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG-YGMTETCAPISLENPLVGVRRSGSA-GTLVAGVE-AQIVSVD--T  352 (424)
Q Consensus       278 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-yG~tE~~~~~~~~~~~~~~~~~~~~-G~~~~~~~-~~i~d~~--~  352 (424)
                      .+++|+|.+....-.......++..++|+.++.. |++||+.. ...-.|.   ..+..+ ...+|+.. .+-++.+  +
T Consensus       303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~-ginl~P~---~~p~~~sy~L~p~~~yFEFip~~~~~  378 (612)
T PLN02620        303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYF-GVNLNPL---CKPSEVSYTLIPTMAYFEFLPVHRNN  378 (612)
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEE-EeccCCC---CCcccceeeecCCcEEEEEeeccCcc
Confidence            5788888766655667777788777778877764 99999433 3322222   111112 22233322 2333211  1


Q ss_pred             -----------------C-----ccCCCCCceeEEEecCCcchhhhhccccCceEEEec----CCce------e--eEee
Q 014435          353 -----------------L-----KPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS----NDHN------D--FFCK  398 (424)
Q Consensus       353 -----------------~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~----~g~~------d--i~~~  398 (424)
                                       +     ..+..|+.-|++|+...   | --+|+.||+.++..    .-.+      +  ..+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~---G-LyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~  454 (612)
T PLN02620        379 GVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYA---G-LYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSID  454 (612)
T ss_pred             cccccccccccccccccCccccHHHccCCCeEEEEEEecC---c-eEEEecCCEEEEeeecCCCceEEEEeecCceeecc
Confidence                             1     12578889999998643   1 12469999987642    1122      2  5678


Q ss_pred             eeeeChhhHHHHHhc
Q 014435          399 LFQVAPAELEGLLVS  413 (424)
Q Consensus       399 G~~v~~~~iE~~l~~  413 (424)
                      |+|.+-.++-.++.+
T Consensus       455 gEK~tE~~l~~Av~~  469 (612)
T PLN02620        455 SDKTDEVELQNAVKN  469 (612)
T ss_pred             cccCCHHHHHHHHHH
Confidence            999999888877754

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.31  E-value=0.021  Score=55.83  Aligned_cols=129  Identities=11%  Similarity=-0.006  Sum_probs=77.4

Q ss_pred             CCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEe-cccCccCCCceeecCCCCCccCCCccccccCCcE-EEEeeCCCC--
Q 014435          278 ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ-GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVE-AQIVSVDTL--  353 (424)
Q Consensus       278 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~i~d~~~~--  353 (424)
                      .+++|+|.+....-.......++..++|+.++. .|++||+.. ...-.+.  ..........+|+.. .+-++.+++  
T Consensus       292 WP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~-ginl~p~--~~p~~~sy~L~p~~~yFEFip~~~~~~  368 (606)
T PLN02247        292 WPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYF-GINLKPL--SDPSDVSYTLLPNMAYFEFLPVDKNNG  368 (606)
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEE-EeccCcC--CCccCCceeecCCcEEEEEeecCCCcc
Confidence            578898877655566777788888788887776 599999433 2222221  001111222333322 233321111  


Q ss_pred             ---------------------------ccCCCCCceeEEEecCCcchhhhhccccCceEEEec----CCce------e--
Q 014435          354 ---------------------------KPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS----NDHN------D--  394 (424)
Q Consensus       354 ---------------------------~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~----~g~~------d--  394 (424)
                                                 ..+..|+.-||+|+...   | --+||.||+.++..    --.+      +  
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~~---G-LYRYrlGDvv~V~GF~n~~P~~~Fv~R~~~v  444 (606)
T PLN02247        369 EVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFT---G-LYRYRVGDILMVTGFYNNAPQFRFVQRRNVV  444 (606)
T ss_pred             cccccccccccccccccccccCceecHHHccCCCeEEEEEEecC---c-eEEEecCCEEEEeeecCCCceEEEEecCCce
Confidence                                       13578888999998642   1 12469999987641    1112      2  


Q ss_pred             eEeeeeeeChhhHHHHHhc
Q 014435          395 FFCKLFQVAPAELEGLLVS  413 (424)
Q Consensus       395 i~~~G~~v~~~~iE~~l~~  413 (424)
                      ..+.|+|.+-.++-.++.+
T Consensus       445 lsi~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        445 LSIDTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             eecccccCCHHHHHHHHHH
Confidence            5679999999988877755

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.16  E-value=0.035  Score=54.68  Aligned_cols=125  Identities=9%  Similarity=-0.016  Sum_probs=72.1

Q ss_pred             CCCe---eEEEecCCCCCHHHHHHHHHhCCCCe-EEecccCccCCCceeecCCCCCccCCCccccc--cCCcEEEEeeCC
Q 014435          278 ISSL---KLVGSGAAPLGKELMEDCQKNIPGAT-IFQGYGMTETCAPISLENPLVGVRRSGSAGTL--VAGVEAQIVSVD  351 (424)
Q Consensus       278 ~~~l---r~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~i~d~~  351 (424)
                      .+++   ..+..||..   .....++..+++.. +...|++||+. +.....+.   ..+...+..  ..++-.+-++.+
T Consensus       301 WPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~-~gi~~~~~---~~p~~~~~~l~~~~~ffEFiP~~  373 (597)
T PLN02249        301 WPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESY-FGINLNPM---CKPSEVSYTIMPNMAYFEFLPHN  373 (597)
T ss_pred             CCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceE-EEeecCCC---CCCCCcceEecCCcEEEEeeecc
Confidence            5774   445555543   66677777776654 44679999943 33322211   111111111  123334444311


Q ss_pred             -C------------CccCCCCCceeEEEecCCcchhhhhccccCceEEEecCC----ce------e--eEeeeeeeChhh
Q 014435          352 -T------------LKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSND----HN------D--FFCKLFQVAPAE  406 (424)
Q Consensus       352 -~------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~g----~~------d--i~~~G~~v~~~~  406 (424)
                       .            -..+..|+.-||+|+..+-    -=+|+.||+.++..--    .+      +  +++.|++++-.+
T Consensus       374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~G----LyRY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~  449 (597)
T PLN02249        374 HDGDGALDETSLVELADVEVGKEYELVITTYAG----LYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEAD  449 (597)
T ss_pred             cCCcccCCCCcEecHHHcCCCCeEEEEEEcccc----eeEeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHH
Confidence             1            1235788889999986431    1236999999875321    11      2  778999999999


Q ss_pred             HHHHHhc
Q 014435          407 LEGLLVS  413 (424)
Q Consensus       407 iE~~l~~  413 (424)
                      ++.++.+
T Consensus       450 v~~Av~~  456 (597)
T PLN02249        450 LQKAVEN  456 (597)
T ss_pred             HHHHHHH
Confidence            9998866

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=96.23  E-value=0.039  Score=51.50  Aligned_cols=88  Identities=16%  Similarity=0.064  Sum_probs=72.4

Q ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           24 DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        24 ~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      -+|+.+...-+..+|+.|...|..+||+|..+..-+  ..-+-..+|+.++|+.++|+.+... +.-..+++++++.+|.
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~-~~~~~l~~df~~tvI~  187 (438)
T COG1541         109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT-ERQLELMKDFKPTVIA  187 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH-HHHHHHHHhcCCcEEE
Confidence            389999999999999999999999999988876621  1226788999999999999988544 4456788999999999


Q ss_pred             EcccchHHHhc
Q 014435          102 TVPELWDKVKD  112 (424)
Q Consensus       102 ~~~~~~~~~~~  112 (424)
                      +.+++...+.+
T Consensus       188 ~tps~~l~lae  198 (438)
T COG1541         188 ATPSYLLYLAE  198 (438)
T ss_pred             EChHHHHHHHH
Confidence            99887665443

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=91.79  E-value=1.7  Score=41.44  Aligned_cols=85  Identities=12%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCc--cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|..++......++..+...|++++|++....+.+.  ......+++...|+.++++++.. .+.+...+++.++++++.
T Consensus        95 ~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~  173 (422)
T TIGR02155        95 YTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIMV  173 (422)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEEE
Confidence            688888777777777888889999998877655442  22334677889999999887754 577889999999999999


Q ss_pred             cccchHHH
Q 014435          103 VPELWDKV  110 (424)
Q Consensus       103 ~~~~~~~~  110 (424)
                      .+.....+
T Consensus       174 ~Ps~l~~L  181 (422)
T TIGR02155       174 TPSYMLNL  181 (422)
T ss_pred             cHHHHHHH
Confidence            88766544

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=91.48  E-value=2.3  Score=41.00  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcc--HHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|..++...+...+..+...|++++|++.+..+.+..  .....+++...|+.+++...   ......++++.++.+++.
T Consensus       106 ~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~~  182 (445)
T TIGR03335       106 LTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIVA  182 (445)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEEE
Confidence            7999999888888888888899999999998776543  23456788899998887653   234567889999999887


Q ss_pred             cccc
Q 014435          103 VPEL  106 (424)
Q Consensus       103 ~~~~  106 (424)
                      .+..
T Consensus       183 ~ps~  186 (445)
T TIGR03335       183 SVFK  186 (445)
T ss_pred             CHHH
Confidence            6543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=83.81  E-value=5.4  Score=39.04  Aligned_cols=85  Identities=15%  Similarity=0.194  Sum_probs=64.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|+..+...+..+..   ..++++++++....|..  ..+...+++++..|+.+++. +..+++.+...+++.++.++..
T Consensus       186 ~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~  261 (513)
T PRK07656        186 LTHRQLLSNAADWAE---YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVLPG  261 (513)
T ss_pred             EecHHHHHHHHHHHH---hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEEec
Confidence            688888765555443   34788999998887754  33455678999999998875 5568899999999999999999


Q ss_pred             cccchHHHhcC
Q 014435          103 VPELWDKVKDL  113 (424)
Q Consensus       103 ~~~~~~~~~~~  113 (424)
                      .+..+..+...
T Consensus       262 ~p~~~~~l~~~  272 (513)
T PRK07656        262 PPTMYNSLLQH  272 (513)
T ss_pred             hHHHHHHHHcC
Confidence            88877666543

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=82.04  E-value=12  Score=36.53  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=64.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccH-HHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEc
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV  103 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~  103 (424)
                      +|++.+.........   ..+++++|++....|....+ +...++++..|+.++..+.. +.+.+...+++.++..+++.
T Consensus       187 ~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~  262 (521)
T PRK06187        187 LSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFAV  262 (521)
T ss_pred             eehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEch
Confidence            688887766655544   45788999988887765332 33445588899998877665 88999999999999999998


Q ss_pred             ccchHHHhcC
Q 014435          104 PELWDKVKDL  113 (424)
Q Consensus       104 ~~~~~~~~~~  113 (424)
                      +.....+...
T Consensus       263 p~~~~~l~~~  272 (521)
T PRK06187        263 PTIWQMLLKA  272 (521)
T ss_pred             HHHHHHHHcC
Confidence            8877766543

>PRK08315 AMP-binding domain protein; Validated

Probab=80.10  E-value=12  Score=37.26  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPN--SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|++.+...+..+..   ..+++++|++....|-  ...++..+++.+..|+..+......++..+...+++.+++++..
T Consensus       219 ~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~  295 (559)
T PRK08315        219 LTHRNILNNGYFIGE---AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYG  295 (559)
T ss_pred             eeHHHHHHHHHHHHH---hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEec
Confidence            678777655554443   3478999998887775  34555667888999998886666678888999999999999988


Q ss_pred             cccchHHH
Q 014435          103 VPELWDKV  110 (424)
Q Consensus       103 ~~~~~~~~  110 (424)
                      .+..+..+
T Consensus       296 ~P~~~~~~  303 (559)
T PRK08315        296 VPTMFIAE  303 (559)
T ss_pred             chHHHHHH
Confidence            77655433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	424
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		6e-61
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-58
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-37
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-37
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		4e-37
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		9e-37
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		1e-36
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-33
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-33
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-33
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		6e-24
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-22
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-20
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		3e-20
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-19
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-19
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-19
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-18
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-17
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-17
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		2e-15
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-15
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-13
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		5e-13
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		5e-11
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-10
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		5e-10
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		8e-10
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		8e-10
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		8e-10
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-09
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		3e-09
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		3e-09
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		3e-09
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		3e-09
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		3e-09
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-08
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-08
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		3e-08
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		3e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		6e-07
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		2e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		6e-06
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-05
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		1e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  231 bits (589), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 232/435 (53%), Gaps = 49/435 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++S    I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T 
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 144
           +E++KQ K SN KL+IT     DK+K L N   V++   D                F +L
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTEL 206
Query: 145 IELSGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
            + +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE
Sbjct: 207 TQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGE 261
Query: 204 -------LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
                   D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV
Sbjct: 262 NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTV 321
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
             +VPPI+LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE
Sbjct: 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381
Query: 317 TCAPISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
               +++     + P     +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +
Sbjct: 382 AGPVLAMSLGFAKEPF--PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439
Query: 372 TPVF-----------------------ELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELE 408
              +                        +  +  LF   R  +   +  K FQVAPAELE
Sbjct: 440 MKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY--KGFQVAPAELE 497
Query: 409 GLLVSHPEILDAVVI 423
            LL+ HP+I D  V+
Sbjct: 498 ALLIGHPDITDVAVV 512

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 217/419 (51%), Gaps = 45/419 (10%)
Query: 36  KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
           +V+     +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S
Sbjct: 61  RVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKAS 120
Query: 96  NPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP 155
             KL+IT    ++KVKD          +                 F +L +      + P
Sbjct: 121 RAKLLITQACYYEKVKDF-------ARESDVKVMCVDSAPDGCLHFSELTQ--ADENEAP 171
Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLP 213
            V +   D  AL YSSGTTG+ KGV+LTHK  I   A  +   +  L    + V+LCVLP
Sbjct: 172 QVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231
Query: 214 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
           MFH++ L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  +
Sbjct: 232 MFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL 291
Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPISLENPL 327
            K D+SSL+++ SG APLGKEL +  +   P A + QGYGMTE       C   + E   
Sbjct: 292 DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFD 351
Query: 328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNC-- 381
           +   + G+ GT+V   E +IV  +T   LP NQ GEI +RG  +   +    E T     
Sbjct: 352 I---KPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408
Query: 382 -----------------NLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVI 423
                             LF   R  +   +  K FQVAPAELE LL++HPEI DA V+
Sbjct: 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY--KGFQVAPAELEALLIAHPEISDAAVV 465

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 205/429 (47%), Gaps = 43/429 (10%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++ +  + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y  
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
            EL   +  S P +V    +   K+ ++   LP +    ++ SK                
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
                 E       +P+   +    A ++ SSG+TG+ KGV L H+   A      A   
Sbjct: 177 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRT--ACVRFSHARDP 230
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
           + G     D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++  
Sbjct: 231 IFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQS 289
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
             +VP +    AK++L+ K+D+S+L  + SG APL KE+ E   K      I QGYG+TE
Sbjct: 290 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
           T + I L  P  G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +   + 
Sbjct: 350 TTSAI-LITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYV 407
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
              E T         ++    +Y+  ++H  FF           K +QVAPAELE +L+ 
Sbjct: 408 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGYQVAPAELESILLQ 465
Query: 414 HPEILDAVV 422
           HP I DA V
Sbjct: 466 HPNIFDAGV 474

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 205/429 (47%), Gaps = 43/429 (10%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++ +  + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y  
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
            EL   +  S P +V    +   K+ ++   LP +    ++ SK                
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
                 E       +P+   +    A ++ SSG+TG+ KGV L H+   A      A   
Sbjct: 172 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRT--ACVRFSHARDP 225
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
           + G     D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++  
Sbjct: 226 IFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
             +VP +    AK++L+ K+D+S+L  + SG APL KE+ E   K      I QGYG+TE
Sbjct: 285 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
           T + I L  P  G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +   + 
Sbjct: 345 TTSAI-LITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYV 402
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
              E T         ++    +Y+  ++H  FF           K +QVAPAELE +L+ 
Sbjct: 403 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 414 HPEILDAVV 422
           HP I DA V
Sbjct: 461 HPNIFDAGV 469

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 205/429 (47%), Gaps = 43/429 (10%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++ +  + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y  
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
            EL   +  S P +V    +   K+ ++   LP +    ++ SK                
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
                 E       +P+   +    A ++ SSG+TG+ KGV L H+   A      A   
Sbjct: 172 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRT--ACVRFSHARDP 225
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
           + G     D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++  
Sbjct: 226 IFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
             +VP +    AK++L+ K+D+S+L  + SG APL KE+ E   K      I QGYG+TE
Sbjct: 285 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
           T + I L  P  G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +   + 
Sbjct: 345 TTSAI-LITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYV 402
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
              E T         ++    +Y+  ++H  FF           K +QVAPAELE +L+ 
Sbjct: 403 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 414 HPEILDAVV 422
           HP I DA V
Sbjct: 461 HPNIFDAGV 469

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 204/429 (47%), Gaps = 43/429 (10%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++ +  + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN  Y  
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
            EL   +  S P +V    +   K+ ++   LP +    ++ SK                
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
                 E       +P+   +    A ++ SSG+TG+ KGV L H+    A     A   
Sbjct: 177 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRAL--AVRFSHARDP 230
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
           + G     D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++  
Sbjct: 231 IFGNQIAPDTAILSVVPFHHGFGMFTTL-GYLISGFRVVLMYRFEEELFLRSLQDYKIQS 289
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
             +VP +   LAK++L+ K+D+S+L  + SG APL KE+ E   K      I QGYG+TE
Sbjct: 290 ALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
           T + I L  P  G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +   + 
Sbjct: 350 TTSAI-LITP-KGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYV 407
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
              E T         ++    +Y+  ++H  FF           K  QVAPAELE +L+ 
Sbjct: 408 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGCQVAPAELESILLQ 465
Query: 414 HPEILDAVV 422
           HP I DA V
Sbjct: 466 HPNIFDAGV 474

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/436 (29%), Positives = 205/436 (47%), Gaps = 56/436 (12%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPVY 83
           ++S +  +  +++ + +  G+  +  + + + NS+ F  P+C  G + IG   +  N +Y
Sbjct: 86  TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVC--GALFIGVGVAPTNDIY 143
Query: 84  TVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPA----VLLGSKDXXXXXXXXXXXXX 137
              EL   +  S P +V        K+  +   LP     V+L S++             
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQS------ 197
Query: 138 XXXFHDLIE--LSGSVTD---IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 192
               +  IE  L     +   IPD   ++T  A ++ SSG+TG+ KGV LTHKN      
Sbjct: 198 ---MYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVR-- 252
Query: 193 MISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 249
                  + G     D  +L V+P  H FG+   L   L  G  +V M +F+ E+ LR++
Sbjct: 253 FSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSL 311
Query: 250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 309
           + Y++    +VP +    AK++LV K+D+S+L  + SG APL KE+ E   K      I 
Sbjct: 312 QDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIR 371
Query: 310 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 369
           QGYG+TET + I +  P     + G+ G +V    A+IV +DT K L  NQ GE+ V+GP
Sbjct: 372 QGYGLTETTSAIII-TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGP 430
Query: 370 NVTPVF----ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAE 406
            +   +    E T         ++    +Y+  + +  FF           K +QV PAE
Sbjct: 431 MIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGY--FFIVDRLKSLIKYKGYQVPPAE 488
Query: 407 LEGLLVSHPEILDAVV 422
           LE +L+ HP I DA V
Sbjct: 489 LESILLQHPFIFDAGV 504

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 198/430 (46%), Gaps = 41/430 (9%)
Query: 24  DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 83
           D S++ +      +  + ++ G+     + + + N   F I  +  + IG   +  N +Y
Sbjct: 52  DYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111
Query: 84  TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHD 143
           T+ EL   +  S P +V +  +  DKV  +      + +                  F  
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171
Query: 144 LIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----FIAASLMISAH 197
                G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F  A   I  +
Sbjct: 172 RNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
           Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+ ++ Y+ T  
Sbjct: 232 QVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDYKCTSV 287
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMT 315
            +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG  + QGYG+T
Sbjct: 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLT 345
Query: 316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
           ET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+ V+GP +   +
Sbjct: 346 ETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 376 -------------ELTVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLV 412
                        E  ++     Y+    H  FF           K +QV PAELE +L+
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKH--FFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 413 SHPEILDAVV 422
            HP I DA V
Sbjct: 462 QHPSIFDAGV 471

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 198/430 (46%), Gaps = 41/430 (9%)
Query: 24  DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 83
           D S++ +      +  + ++ G+     + + + N   F I  +  + IG   +  N +Y
Sbjct: 52  DYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111
Query: 84  TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHD 143
           T+ EL   +  S P +V +  +  DKV  +      + +                  F  
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171
Query: 144 LIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----FIAASLMISAH 197
                G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F  A   I  +
Sbjct: 172 RNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
           Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+ ++ Y+ T  
Sbjct: 232 QVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDYKCTSV 287
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMT 315
            +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG  + QGYG+T
Sbjct: 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLT 345
Query: 316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
           ET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+ V+GP +   +
Sbjct: 346 ETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 376 -------------ELTVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLV 412
                        E  ++     Y+    H  FF           K +QV PAELE +L+
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKH--FFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 413 SHPEILDAVV 422
            HP I DA V
Sbjct: 462 QHPSIFDAGV 471

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 198/430 (46%), Gaps = 41/430 (9%)
Query: 24  DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 83
           D S++ +      +  + ++ G+     + + + N   F I  +  + IG   +  N +Y
Sbjct: 52  DYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111
Query: 84  TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHD 143
           T+ EL   +  S P +V +  +  DKV  +      + +                  F  
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171
Query: 144 LIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----FIAASLMISAH 197
                G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F  A   I  +
Sbjct: 172 RNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
           Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+ ++ Y+ T  
Sbjct: 232 QVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDYKCTNV 287
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMT 315
            +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG  + QGYG+T
Sbjct: 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLT 345
Query: 316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
           ET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+ V+GP +   +
Sbjct: 346 ETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 376 -------------ELTVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLV 412
                        E  ++     Y+    H  FF           K +QV PAELE +L+
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKH--FFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 413 SHPEILDAVV 422
            HP I DA V
Sbjct: 462 QHPSIFDAGV 471

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 178/443 (40%), Gaps = 55/443 (12%)
Query: 18  PLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 77
           P   P   +F     +  K++      G+ K + V +  PNSI +      +  + A   
Sbjct: 46  PSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPV 105
Query: 78  TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXX 137
             NP Y   EL   + DS    ++    L++     N   VL                  
Sbjct: 106 PINPXYKSFELEHILNDSEATTLVVHSXLYE-----NFKPVL-------EKTGVERVFVV 153
Query: 138 XXXFHDLIELSGSVT-DIPDVSVK-QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 195
               + L E+  S + D  +V V  + D A + Y+ GTTG  KGV LTH N  A +L ++
Sbjct: 154 GGEVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLA 213
Query: 196 AHQELVGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
               L    D +V C  P FH   FGL  +    +  GN  V  G F+ E     IEKY+
Sbjct: 214 VATGL-SHXDTIVGCX-PXFHSAEFGLVNL---XVTVGNEYVVXGXFNQEXLAENIEKYK 268
Query: 254 VTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQK------NIPG 305
            T  W VPP +  L     S  + +D S LK+  +GA P+   L+E   K      N P 
Sbjct: 269 GTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR 328
Query: 306 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 365
               Q +G TE C P    NP + + +S + G   + +E +++S++  + L   + GEI 
Sbjct: 329 LRHNQIWGXTEAC-PXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIV 387
Query: 366 VRGPNVTPVFELTVNCNLFSYFRSNDHNDFF-------------------------CKLF 400
           +RGPN+   +      N   ++       FF                          K +
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGY 447
Query: 401 QVAPAELEGLLVSHPEILDAVVI 423
            +AP ELE LL  H  + D  VI
Sbjct: 448 TIAPFELEALLXKHEAVXDVAVI 470

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 149/354 (42%), Gaps = 34/354 (9%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S++   +   +V++     G+   D V      S+   + +L  +  G +    N  YT+
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
            EL   + D+ PK+V+  P   D +  +   A  +G+                       
Sbjct: 90  HELDYFITDAEPKIVVCDPSKRDGIAAI---AAKVGATVETLGP---------------- 130
Query: 146 ELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH 197
           +  GS+TD           +     D AA+LY+SGTTG SKG  L+H N  + SL +  +
Sbjct: 131 DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDY 190
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
                  D V++  LP++H  GL V     L      + + KFD +  L      R TV 
Sbjct: 191 WRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVL 246
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET 317
             VP     L ++  + K      +L  SG+APL  +   +      G  + + YG TET
Sbjct: 247 XGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKT-GHAVLERYGXTET 305
Query: 318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
               S  NP  G R  G+ G  + GV A++   +T K LP   +G I V+GPNV
Sbjct: 306 NXNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNV 357

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 177/426 (41%), Gaps = 54/426 (12%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++   ++  + +     LGI K D V +  PNS+ F   F G   +GA+A   N     
Sbjct: 45  TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 104
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
            E+S  + DS  K+VI                   G+                    D I
Sbjct: 105 PEVSFILSDSGSKVVI------------------YGAPSAPVIDAIRAQADPPGTVTDWI 146
Query: 146 -------ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
                   L  +  D P V     D   ++Y+SGTTG  KGV+ TH++  +A+   ++  
Sbjct: 147 GADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 206
Query: 199 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
           ++       +L  LPMFHV  L+ +++  + +G  ++SM +FD       I + RV +  
Sbjct: 207 DV--RYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGG 263
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME-DCQKNIPGATIFQGYGMTET 317
            VP I+  + +     + D    +   +G AP+ + L++    KNI    + QGY +TE+
Sbjct: 264 AVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTES 320
Query: 318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-- 375
           C   +L      +R++GSAG      +  +   D +  +  +  GE+ ++   +   +  
Sbjct: 321 CGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWN 378
Query: 376 --ELTVNCNLFSYFRSNDHNDFFCKLF----------------QVAPAELEGLLVSHPEI 417
             E T +     +FR+ D  +   + +                 V PAE+E +++  P +
Sbjct: 379 RPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGV 438
Query: 418 LDAVVI 423
            +  VI
Sbjct: 439 SEVAVI 444

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 32/320 (10%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++   ++  + +     LGI K D V +  PNS+ F   F G   +GA+A   N     
Sbjct: 31  TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
            E+S  + DS  K+VI                   G+                    D I
Sbjct: 91  PEVSFILSDSGSKVVI------------------YGAPSAPVIDAIRAQADPPGTVTDWI 132
Query: 146 -------ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
                   L  +  D P V     D   ++Y+SGTTG  KGV+ TH++  +A+   ++  
Sbjct: 133 GADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 192
Query: 199 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
           ++       +L  LPMFHV  L+ +++  + +G  ++SM +FD       I + RV +  
Sbjct: 193 DV--RYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGG 249
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME-DCQKNIPGATIFQGYGMTET 317
            VP I+  + +     + D    +   +G AP+ + L++    KNI    + QGY +TE+
Sbjct: 250 AVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTES 306
Query: 318 CAPISLENPLVGVRRSGSAG 337
           C   +L      +R++GSAG
Sbjct: 307 CGGGTLLLSEDALRKAGSAG 326

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 146/358 (40%), Gaps = 42/358 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S++   +   +V++     G+   D V      S+   + +L  +  G +    N  YT+
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXXXXXXXXXXF 141
            EL   + D+ P +V+  P   D +  +          LG                    
Sbjct: 90  HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG----------------- 132
Query: 142 HDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 193
                  GS+TD           +     D AA+LY+SGTTG S G +L+H N  + SL 
Sbjct: 133 ------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLT 186
Query: 194 ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
           +  +       D V++  LP++H  GL V     L     ++ +  FD +  L  +   R
Sbjct: 187 LVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--R 242
Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
            TV   VP     L ++  +       ++L  SG+APL  +   +      G  + + YG
Sbjct: 243 ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT-GHAVLERYG 301
Query: 314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           MTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +G I V GPNV
Sbjct: 302 MTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 146/358 (40%), Gaps = 42/358 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S++   +   +V++     G+   D V      S+   + +L  +  G +    N  YT+
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXXXXXXXXXXF 141
            EL   + D+ P +V+  P   D +  +          LG                    
Sbjct: 90  HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG----------------- 132
Query: 142 HDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 193
                  GS+TD           +     D AA+LY+SGTTG S G +L+H N  + SL 
Sbjct: 133 ------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLT 186
Query: 194 ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
           +  +       D V++  LP++H  GL V     L     ++ +  FD +  L  +   R
Sbjct: 187 LVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--R 242
Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
            TV   VP     L ++  +       ++L  SG+APL  +   +      G  + + YG
Sbjct: 243 ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT-GHAVLERYG 301
Query: 314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           MTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +G I V GPNV
Sbjct: 302 MTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 147/358 (41%), Gaps = 42/358 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S++   +   +V++     G+   D V      S+   + +L  +  G +    N  YT+
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXXXXXXXXXXF 141
            EL   + D+ P +V+  P   D +  +          LG                    
Sbjct: 90  HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP------------------- 130
Query: 142 HDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 193
               +  GS+TD           +     D AA+LY+SGTTG S G +L+H N  + SL 
Sbjct: 131 ----DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLT 186
Query: 194 ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
           +  +       D V++  LP++H  GL V     L     ++ +  FD +  L  +   R
Sbjct: 187 LVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--R 242
Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
            TV   VP     L ++  +       ++L  SG+APL  +   +      G  + + YG
Sbjct: 243 ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT-GHAVLERYG 301
Query: 314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           MTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +G I V GPNV
Sbjct: 302 MTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 159/374 (42%), Gaps = 67/374 (17%)
Query: 80  NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 139
           NP     EL+  + DS P LV+  P       D  LP  L G+ +               
Sbjct: 99  NPKSGDKELAHILSDSAPSLVLAPP-------DAELPPAL-GALERVDVD---------- 140
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
                +   G+V   P+      D A ++Y+SGTTG  KG ++  +        ++   +
Sbjct: 141 -----VRARGAV---PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 200 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 259
             GE   V++  LP+FHV GL + +   L++G  V  +G+F  E A R +     T+ + 
Sbjct: 193 WTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFG 249
Query: 260 VPPIILALAKN-----SLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGY 312
           VP +   +A+       L +    + L + GS A P+      D ++     G  + + Y
Sbjct: 250 VPTMYHRIAETLPADPELAKALAGARLLVSGSAALPV-----HDHERIAAATGRRVIERY 304
Query: 313 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT--LKPLPPNQLGEIWVRGPN 370
           GMTET    S+     G  R+G+ G  + GVE ++V  D   +  L    +GEI VRGPN
Sbjct: 305 GMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPN 362
Query: 371 VTPVF--ELTVNCNLFS---YFRSND----HNDFFCKL-------------FQVAPAELE 408
           +   +          F+   +FR+ D      D + ++             +++   E+E
Sbjct: 363 LFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIE 422
Query: 409 GLLVSHPEILDAVV 422
             L+ HPE+ +A V
Sbjct: 423 NALLEHPEVREAAV 436

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 172/404 (42%), Gaps = 49/404 (12%)
Query: 45  GITKKDVVLIFAPNSIHFPICFLGVIA-IGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
           G+   D V I + N     I  +G +A IGAI    N      E++  + D  P +V+  
Sbjct: 52  GVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAG 110
Query: 104 PELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTD 163
            +  D V  + LP+ L G K                 F DL     S T          D
Sbjct: 111 TDYRDIVAGV-LPS-LGGVK---KAYAIGDGSGPFAPFKDL----ASDTPFSAPEFGAAD 161
Query: 164 AAALLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
              +++++   G  +G +++  N  IA S ++ A +  + E D V L +LP+FHV GL +
Sbjct: 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR--LTEAD-VNLGMLPLFHVTGLGL 218
Query: 223 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 282
           +L  Q Q G   V   KFD   A R IE ++VTV     P++  +   +   +  ++SL+
Sbjct: 219 MLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ--LASLR 275
Query: 283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG 342
            V     P   E +E  +   P AT +  +G +ET   +S   P     R  SAG  +  
Sbjct: 276 AVTGLDTP---ETIERFEATCPNATFWATFGQSETSG-LSTFAPYR--DRPKSAGRPLFW 329
Query: 343 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHN-------DF 395
               +V  +  +PLPP ++GEI +RGP V   +         + FR+  H+       D 
Sbjct: 330 RTVAVVDAED-RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHA-FRNGWHHTGDMGRFDA 387
Query: 396 FCKLF----------------QVAPAELEGLLVSHPEILDAVVI 423
              LF                 V PAE+EG L  HP I DAVVI
Sbjct: 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVI 431

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 163/351 (46%), Gaps = 30/351 (8%)
Query: 30  FKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI----CFLGVIAIGAIASTANPVYTV 85
           ++++  + S   + L   ++  V ++  NSI   I    C+L  I I  I +   P    
Sbjct: 29  YQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTP---- 84
Query: 86  SELSKQVKDSNPKLVI-TVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXX-XXXXXFHD 143
           +E++ Q++  + +L+  T+P      + ++L  +    +D                  ++
Sbjct: 85  NEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNE 144
Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
            +    S ++I + S    D A+++++SGTTG  K V  T +N  A++  I   + L  +
Sbjct: 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASA--IGCKESLGFD 202
Query: 204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 263
            D   L VLP++H+ GLSV+L   ++ G  V  + KF+ E  L  I+  R+T   +VP  
Sbjct: 203 RDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQT 261
Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQGYGMTETCAPIS 322
           +  L +  L   +++  + L   G A L   ++E   Q N+P   I+  +GMTETC+   
Sbjct: 262 LNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP---IYNSFGMTETCSQFL 315
Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--LGEIWVRGPNV 371
              P +   R  + G   A V+ +I +        PN+   GE+ ++G NV
Sbjct: 316 TATPEMLHARPDTVGMPSANVDVKIKN--------PNKEGHGELMIKGANV 358

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 179/427 (41%), Gaps = 46/427 (10%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+    +   +++  F+ LGI +KD V++  PN   F      +  +GA+   A P +  
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           SE++   + +     I +P   D     +  ++    +                 F  L 
Sbjct: 112 SEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           +L      +P+V  K +D A L  S G+TG+SK +  TH ++I  SL  S     V  LD
Sbjct: 168 DLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYIY-SLKRSVE---VCWLD 221
Query: 206 H--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
           H  V L  LPM H + LS      +LY     G  VV       + A   IE+ +VT+  
Sbjct: 222 HSTVYLAALPMAHNYPLSSPGVLGVLY----AGGRVVLSPSPSPDDAFPLIEREKVTITA 277
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 318
           +VPP+ +     +  R+ D+SSL+++  G A    E      K + G T+ Q +GM E  
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGL 336
Query: 319 APIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFEL 377
              + L++P   +    + G  ++  +   V  D  + + P + G +  RGP     +  
Sbjct: 337 VNYTRLDDPEEII--VNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK 394
Query: 378 TVNCNLFS-----YFRSND----HNDFFCKL------------FQVAPAELEGLLVSHPE 416
               N  S     ++R+ D      D +  +             +VA  E+E  L++HP 
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 417 ILDAVVI 423
           + DA ++
Sbjct: 455 VHDAAMV 461

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 176/423 (41%), Gaps = 37/423 (8%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++   +    + + + R LG+  ++ +L+   +++  P+ FLG +  G +   AN + T 
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           ++    +  S+ + VI    L   V      A   G +                 F +LI
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEELI 168
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           + +              D A  LYSSG+TG  KG + TH N    + + +     + E D
Sbjct: 169 DAAAPAAKAAATGCD--DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND 226
Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA-IEKYRVTVWWVVPPII 264
            VV     +F  +GL   L   L  G   + M +     A+ A + ++R TV++ VP + 
Sbjct: 227 -VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
Query: 265 L-ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
              L   +L  + D+ ++++  S    L +E+ E    +  G  I  G G TE    I L
Sbjct: 286 ANMLVSPNLPARADV-AIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLH-IFL 342
Query: 324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTV 379
            N   G    G+ G  V G E ++   +    +P  ++G+++++GP+   ++    E + 
Sbjct: 343 SN-RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400
Query: 380 NCNLFSYFRSNDHNDFFCKLFQ-------------------VAPAELEGLLVSHPEILDA 420
              L  + RS D    +C+L                     V+P E+E +LV H  +L+A
Sbjct: 401 ATFLGEWIRSGDK---YCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEA 457
Query: 421 VVI 423
            V+
Sbjct: 458 AVV 460

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 174/427 (40%), Gaps = 46/427 (10%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+    +   +++  F+ LGI +KD V++  PN   F      +  +GA+   A P +  
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           SE++   + +     I +P   D     +  ++    +                 F  L 
Sbjct: 112 SEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           +L      +P+V  K +D A L  S G+TG+SK +  TH ++I  SL  S     V  LD
Sbjct: 168 DLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYI-YSLKRSVE---VCWLD 221
Query: 206 H--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
           H  V L  LP  H + LS      +LY     G  VV       + A   IE+ +VT+  
Sbjct: 222 HSTVYLAALPXAHNYPLSSPGVLGVLY----AGGRVVLSPSPSPDDAFPLIEREKVTITA 277
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 318
           +VPP+       +  R+ D+SSL+++  G A    E      K + G T+ Q +G  E  
Sbjct: 278 LVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAEGL 336
Query: 319 APIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFEL 377
              + L++P   +    + G   +  +   V  D  + + P + G +  RGP     +  
Sbjct: 337 VNYTRLDDPEEII--VNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK 394
Query: 378 TVNCNLFS-----YFRSND----HNDFFCKL------------FQVAPAELEGLLVSHPE 416
               N  S     ++R+ D      D +  +             +VA  E+E  L++HP 
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 417 ILDAVVI 423
           + DA  +
Sbjct: 455 VHDAAXV 461

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 170/418 (40%), Gaps = 48/418 (11%)
Query: 40  SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 99
             R LG+   D V     N       +  V  +GA+  TANP  +  E++  +  +  K+
Sbjct: 63  GLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 122
Query: 100 VITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSV 159
           ++  P L   V+ +         +                 +    E  G   D   V V
Sbjct: 123 LLFDPNLLPLVEAIR-------GELKTVQHFVVMDEKAPEGYLAYEEALGEEAD--PVRV 173
Query: 160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG 219
            +  A  + Y++GTTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV  
Sbjct: 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 233
Query: 220 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS 279
             +     L     V+   + D    +   +   VT    VP + LALA         + 
Sbjct: 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK 293
Query: 280 SLK--LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAG 337
           +L+  +VG  AAP  + L+   ++   G  + QGYG+TET +P+ ++N +     S S  
Sbjct: 294 TLRRLVVGGSAAP--RSLIARFERM--GVEVRQGYGLTET-SPVVVQNFVKSHLESLSEE 348
Query: 338 ---TLVAGVEAQI------VSVDTLKPLPPN--QLGEIWVRGPNVTPVF---ELTVNCNL 383
              TL A     I      V+ +  +P+P +   LGE+ ++GP +T  +   E      L
Sbjct: 349 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 408
Query: 384 F--SYFRSND-----------HNDFFCKLFQ-----VAPAELEGLLVSHPEILDAVVI 423
               +FR+ D             D    L +     ++  +LE  L+ HP++ +A V+
Sbjct: 409 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 165/427 (38%), Gaps = 39/427 (9%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F   K    K ++ F   GI K D V++   +   F  C LG+  +GAIA  A  +   
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
            ++  +++ +  K+++ + E  D  + ++      G                   F   +
Sbjct: 148 RDIVYRIEKAGLKMIVCIAED-DVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKEL 206
Query: 146 ELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
           E S  + + P  +VS K  D   + +SSGT G  K  ++ H N      +++A      E
Sbjct: 207 EESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAKYWQNVE 264
Query: 204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNC--VVSMGKFDIEMALRAIEKYRVTVWWVVP 261
            D +   V        +   LY Q   G    V    +F+ +  L    KY VT +   P
Sbjct: 265 DDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPP 324
Query: 262 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC--- 318
            I   L K  L   ++ S+LK       PL  E+     +   G  + +G+G TET    
Sbjct: 325 TIYRFLIKEDLSH-YNFSTLKYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTI 382
Query: 319 --------APISLENPLVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLP-------- 357
                    P S+  P  G +     R G    +  G E +IV ++T++  P        
Sbjct: 383 ATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEV--GEEGEIV-INTMEGKPVGLFVHYG 439
Query: 358 --PNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHP 415
             P +  E W  G   T      ++ + + +F     +      ++V P E+E  L+ HP
Sbjct: 440 KDPERTEETWHDGYYHTGDMAW-MDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498
Query: 416 EILDAVV 422
            +L+  +
Sbjct: 499 AVLECAI 505

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 23/309 (7%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           + +  ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP    
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           +EL++ +K    ++   V  +  +V D    +   GS                    DL+
Sbjct: 91  AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
                 +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L  
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
              +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P 
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            + ALA  +        + SL+ V    A +   ++E   +++PG  +  GYG TE    
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNS 312
Query: 321 ISLENPLVG 329
           + +  P  G
Sbjct: 313 LYMRQPKTG 321

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           + +  ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP    
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           +EL++ +K    ++   V  +  +V D    +   GS                    DL+
Sbjct: 91  AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
                 +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L  
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
              +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P 
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE    
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNS 312
Query: 321 ISLENPLVG 329
           + +  P  G
Sbjct: 313 LYMRQPKTG 321

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 161/422 (38%), Gaps = 70/422 (16%)
Query: 45  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI--- 101
           G+ K D  L+  PN   F I F  ++  G +   A   +   EL+  +K   PKL+I   
Sbjct: 76  GLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR 135
Query: 102 -----TVPELWDKVKDLNL-PAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP 155
                +  +  D + D+NL P ++L                      D IE         
Sbjct: 136 QHEVFSNNQFIDSLHDVNLSPEIIL----------MLNHQATDFGLLDWIETPAET--FV 183
Query: 156 DVSVKQTDAAALLY-SSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLP 213
           D S    D  A    S G+TG  K +  TH ++      + A  E+ G   +  +LC LP
Sbjct: 184 DFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDY---DYSVRASAEICGLNSNTRLLCALP 240
Query: 214 MFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
             H F LS       L  G CVV     +       I++++V +  +VP  ++   + + 
Sbjct: 241 APHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA 300
Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR 332
             K  I SLKL+  G A   + L     + +    + Q +GM E          LV   R
Sbjct: 301 QYKDQIQSLKLLQVGGASFPESLARQVPE-VLNCKLQQVFGMAEG---------LVNYTR 350
Query: 333 SGSAGTLVAGVEAQIVSVD--------TLKPLPPNQLGEIWVRGP-----------NVTP 373
              +   +   + + +S D          + +P  ++G +  RGP           + + 
Sbjct: 351 LDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410
Query: 374 VF------------ELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAV 421
           VF            + T + NL    R  D  +   +  ++A  E+E L++ HPE++ A 
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGE--KIASEEIEKLILLHPEVMHAA 468
Query: 422 VI 423
           ++
Sbjct: 469 LV 470

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           + +  ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP    
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           +EL++ +K    ++   V  +  +V D    +   GS                    DL+
Sbjct: 91  AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
                 +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L  
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
              +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P 
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE    
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNS 312
Query: 321 ISLENPLVG 329
           + +  P  G
Sbjct: 313 LYMRQPKTG 321

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           + +  ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP    
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           +EL++ +K    ++   V  +  +V D    +   GS                    DL+
Sbjct: 91  AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
                 +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L  
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
              +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P 
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE    
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNS 312
Query: 321 ISLENPLVG 329
           + +  P  G
Sbjct: 313 LYMRQPKTG 321

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           + +  ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP    
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           +EL++ +K    ++   V  +  +V D    +   GS                    DL+
Sbjct: 91  AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
                 +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L  
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
              +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P 
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE    
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNS 312
Query: 321 ISLENPLVG 329
           + +  P  G
Sbjct: 313 LYMRQPKTG 321

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86  SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             ++ ++ DS+ +LVIT  E             + D +K+ N+ +V              
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
                   + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T   ++  AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
           +          G+   +  C   +  V G S +LY  L  G   +   G  +     R  
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
             ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I 
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
                +   +  TET   +    P     ++GSA     GV+  +V  +           
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
             +    P Q   ++         +  T     FS   +    D +  +           
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
             ++  AE+E  LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86  SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             ++ ++ DS+ +LVIT  E             + D +K+ N+ +V              
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
                   + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T   ++  AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
           +          G+   +  C   +  V G S +LY  L  G   +   G  +     R  
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
             ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I 
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
                +   +  TET   +    P     ++GSA     GV+  +V  +           
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
             +    P Q   ++         +  T     FS   +    D +  +           
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
             ++  AE+E  LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86  SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             ++ ++ DS+ +LVIT  E             + D +K+ N+ +V              
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
                   + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T   ++  AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
           +          G+   +  C   +  V G S +LY  L  G   +   G  +     R  
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
             ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I 
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
                +   +  TET   +    P     ++GSA     GV+  +V  +           
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
             +    P Q   ++         +  T     FS   +    D +  +           
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
             ++  AE+E  LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86  SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             ++ ++ DS+ +LVIT  E             + D +K+ N+ +V              
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
                   + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T   ++  AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
           +          G+   +  C   +  V G S +LY  L  G   +   G  +     R  
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
             ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I 
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
                +   +  TET   +    P     ++GSA     GV+  +V  +           
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
             +    P Q   ++         +  T     FS   +    D +  +           
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
             ++  AE+E  LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86  SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             ++ ++ DS+ +LVIT  E             + D +K+ N+ +V              
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
                   + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T   ++  AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
           +          G+   +  C   +  V G S +LY  L  G   +   G  +     R  
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
             ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I 
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
                +   +  TET   +    P     ++GSA     GV+  +V  +           
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
             +    P Q   ++         +  T     FS   +    D +  +           
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
             ++  AE+E  LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86  SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             ++ ++ DS+ +LVIT  E             + D +K+ N+ +V              
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
                   + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T   ++  AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
           +          G+   +  C   +  V G S +LY  L  G   +   G  +     R  
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
             ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I 
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
                +   +  TET   +    P     ++GSA     GV+  +V  +           
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
             +    P Q   ++         +  T     FS   +    D +  +           
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
             ++  AE+E  LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 171/445 (38%), Gaps = 52/445 (11%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86  SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
             ++  + DS+ +LVIT  E             + D +K+ N+ +V              
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
                   + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T   ++  AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
           +          G+   +  C   +  V G S +LY  L  G   +   G  +     R  
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
             ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I 
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
                +   +  TET   +    P     ++GSA     GV+  +V  +           
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
             +    P Q   ++         +  T     FS   +    D +  +           
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
             ++  AE+E  LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 23/309 (7%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           + +  ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP    
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           +EL++ +K                 +     AV+   +                   DL+
Sbjct: 91  AELAELIK-----------------RGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
                 +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L  S    L  
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
              +VVL + P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P 
Sbjct: 194 GRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            + ALA  +        + SL+ V    A     ++E   +++PG  +   YG TE    
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNS 312
Query: 321 ISLENPLVG 329
           +    P  G
Sbjct: 313 LYXRQPKTG 321

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 134/339 (39%), Gaps = 34/339 (10%)
Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
           +G+ K D V ++ P      I  L +  IGAI S     ++ + L  ++ D + K+VIT 
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193
Query: 104 PELWDKVKDLNLPAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSV------TD 153
            E     K +    +    L  +                  FH   +L  +       T 
Sbjct: 194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTY 253
Query: 154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM-----ISAHQELVGELDHVV 208
            P   V   D   LLY+SG+TG  KGV  +   ++  +L+        HQE       V 
Sbjct: 254 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQE------DVF 307
Query: 209 LCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPI- 263
                +  + G + ++Y  L  G   +    +    +       I++++VT ++V P   
Sbjct: 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTAL 367
Query: 264 -ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT--IFQGYGMTETCAP 320
            +L  A +S +    + SL+ +GS   P+  E+ E   + I      I   Y  TE+ + 
Sbjct: 368 RLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS- 426
Query: 321 ISLENPLVGV---RRSGSAGTLVAGVEAQIVSVDTLKPL 356
             L  PL G     + GSA     G++A ++  +T + L
Sbjct: 427 -HLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 156 DVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 212
           DV++++    D A L Y+SG+T   +GVI+TH+  + A+L   +H  +        +  L
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHRE-VXANLRAISHDGIKLRPGDRCVSWL 224
Query: 213 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA 268
           P +H  GL   L   +     V  +   D        L+ I K R TV  V PP    L 
Sbjct: 225 PFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTV-SVAPPFGYELC 283
Query: 269 KNSLVRK----FDISSLKLVGSGAAPLGKELME---DC--QKNIPGATIFQGYGMTETCA 319
           +  +  K     D+S  ++ G GA P+  E +    +C  Q N    T    YG+ E   
Sbjct: 284 QRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENAL 343
Query: 320 PISLENPLVGV 330
            +S  +   GV
Sbjct: 344 AVSFSDEASGV 354

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 138/372 (37%), Gaps = 81/372 (21%)
Query: 51  VVLIFAPNSIHFPI--CFLGVIAIGAIASTANPVYTVSELSKQ---VKDSNPKLVI---- 101
           V+L+FAP     P+   FLG +  G IA    P      L K    V +S P +V+    
Sbjct: 68  VLLLFAPG---LPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIAD 124
Query: 102 -----TVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD 156
                T  EL    K L +PA+ L S                      IEL+ S +  P 
Sbjct: 125 HIKKFTADELNTNPKFLKIPAIALES----------------------IELNRSSSWQP- 161
Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPM 214
            S+K  D A L Y+SG+T   KGV ++H N +     +  S H       + ++   LP 
Sbjct: 162 TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHX----NDETIIFSWLPP 217
Query: 215 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWW---VVPPIILAL 267
            H  GL   +   +  G   +    F         L+ I KY+ T+           +  
Sbjct: 218 HHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277
Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK-----NIPGATIFQGYGMTE------ 316
            +       D+SS     +GA P+ +E  E   +            +  YG+ E      
Sbjct: 278 IREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337
Query: 317 -----------TCAPISLENPLVGVRRSGSAGT--LVAG----VEAQIVSVDTLKPLPPN 359
                      T A    ++  V      S G+  LV+      E +I+  DTL P   +
Sbjct: 338 GGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD 397
Query: 360 QLGEIWVRGPNV 371
           Q+GEIWV+  +V
Sbjct: 398 QVGEIWVQSNSV 409

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/440 (20%), Positives = 161/440 (36%), Gaps = 83/440 (18%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++        +++H    LG+    +V +         +  L V+  G   +  +P + V
Sbjct: 102 TYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPV 161
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
             L+  ++D+   L++T   L  ++                                 L 
Sbjct: 162 ERLALSLEDTGAPLLVTSRPLSGRLTGTTT----------------------------LY 193
Query: 146 ELSGSVTDIPD----VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
               + +D P       V   D A ++++SG+TG  KGV+  H+      L     Q+  
Sbjct: 194 VEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYA 249
Query: 202 G-ELDHVVLCVLPM-FHVFGLSVILYDQLQKG-NCVVSMGKFDIEMAL-RAIEKYRVTVW 257
           G   D V L   P+ +  FGL   L+  L  G  CV+  G+    + +   + ++ VT+ 
Sbjct: 250 GFGPDEVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307
Query: 258 WVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 315
            +   +      N LV +       ++   +G  P     +   +++ P   +  GYG  
Sbjct: 308 QLSASLF-----NFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPA 362
Query: 316 ETCAPISLENPLVGVRRSGSA---GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG---- 368
           E+    +  + +V    SG+A   G  +AG  A ++  D LKP     LGE++V G    
Sbjct: 363 ESMG-FTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLA 420
Query: 369 -----------------PNVTPVFELTVNCNLFSYFRSNDHNDFFCKL--------FQVA 403
                            P   P  E        +  R++   ++  +         F+V 
Sbjct: 421 HGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVE 480
Query: 404 PAELEGLLVSHPEILDAVVI 423
           P E+E  LV HP +  A V+
Sbjct: 481 PGEVEARLVGHPAVRQAAVL 500

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 131/310 (42%), Gaps = 45/310 (14%)
Query: 149 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 208
           GSV+   D  VK+ +   ++Y+SG+TG  KGV ++  N  + +  I A   + G    + 
Sbjct: 132 GSVSQ--DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG--GKIF 187
Query: 209 LCVLPMFHVFGLSVI-LYDQLQKG---NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
           L   P    F LSV+ LY  LQ G   +CV        ++    ++K  + VW   P  +
Sbjct: 188 LNQAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFV 245
Query: 265 -LALAKNSLVRKFDISSLKLVGSGA---APLGKELMEDCQKNIPGATIFQGYGMTE-TCA 319
            + L      +     +   +  G      + K L+E      P A IF  YG TE T A
Sbjct: 246 QMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLE----RFPKAKIFNTYGPTEATVA 301
Query: 320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPVF--- 375
             S+E     + RS S     A  +  I  +D   +PLP  + GEI + GP+V+  +   
Sbjct: 302 VTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGE 361
Query: 376 -ELTVNCNLFSY-----FRSNDHN-------------DFFCKL--FQVAPAELEGLLVSH 414
            ELT     FS+     +R+ D               DF  KL  +++   E+E  +   
Sbjct: 362 PELTEKA-FFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420
Query: 415 PEILDAVVIP 424
             +  AVVIP
Sbjct: 421 QYVRSAVVIP 430

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 92/444 (20%), Positives = 153/444 (34%), Gaps = 76/444 (17%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+         ++ S R  GI   +  L+   N     I F  ++ +G     A   +  
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
           SEL+       P L+I      D+   L      L +                   H+L 
Sbjct: 112 SELNAYASQIEPALLIA-----DRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQ 166
Query: 146 E-LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF---IAASLMISAHQELV 201
           + ++    D         + A    S GTTG  K +  TH ++   +  S+ I    +  
Sbjct: 167 DAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQT 226
Query: 202 GELDHVVLCVLPMFHVFGLS------VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 255
                  LC +P  H + +S      V L      G  VV        +    IEK++V 
Sbjct: 227 -----RYLCAIPAAHNYAMSSPGSLGVFL-----AGGTVVLAADPSATLCFPLIEKHQVN 276
Query: 256 VWWVVPPIILALAKNSLVR---KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 312
           V  +VPP + +L   +L+    +  ++SLKL+  G A L   L       I G  + Q +
Sbjct: 277 VTALVPPAV-SLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVF 334
Query: 313 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL--------KPLPPNQLGEI 364
           GM E          LV   R   +   +   +   +  D           PLP  ++G +
Sbjct: 335 GMAEG---------LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRL 385
Query: 365 WVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCK-------------------------L 399
             RGP     +  +   N  ++    D N F+C                           
Sbjct: 386 MTRGPYTFRGYYKSPQHNASAF----DANGFYCSGDLISIDPEGYITVQGREKDQINRGG 441
Query: 400 FQVAPAELEGLLVSHPEILDAVVI 423
            ++A  E+E LL+ HP ++ A ++
Sbjct: 442 EKIAAEEIENLLLRHPAVIYAALV 465

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+        +++   +  G  K  VV ++   S+   I  LGV+  GA     +P    
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
             +S  + DS    ++T  E+ ++  +L      L                      D  
Sbjct: 551 DRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL-------------------FIDDQT 591
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 186
                 +D P  ++   D A ++Y+SGTTG  KG I TH N
Sbjct: 592 RFEEQASD-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 137/360 (38%), Gaps = 54/360 (15%)
Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++        +++H    LG+    +V +         +  L V+  G   +  +P + V
Sbjct: 102 TYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPV 161
Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
             L+  ++D+   L++T   L  ++                                 L 
Sbjct: 162 ERLALSLEDTGAPLLVTSRPLSGRLTGTTT----------------------------LY 193
Query: 146 ELSGSVTDIPD----VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
               + +D P       V   D A ++++SG+TG  KGV+  H+      L     Q+  
Sbjct: 194 VEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYA 249
Query: 202 G-ELDHVVLCVLPM-FHVFGLSVILYDQLQKG-NCVVSMGKFDIEMAL-RAIEKYRVTVW 257
           G   D V L   P+ +  FGL   L+  L  G  CV+  G+    + +   + ++ VT+ 
Sbjct: 250 GFGPDEVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307
Query: 258 WVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 315
            +   +      N LV +       ++   +G  P     +   +++ P   +  GYG  
Sbjct: 308 QLSASLF-----NFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPA 362
Query: 316 ETCAPISLENPLVGVRRSGSA---GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
           E+    +  + +V    SG+A   G  +AG  A ++  D LKP     LGE++V G  + 
Sbjct: 363 ESMG-FTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLA 420

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-154
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-154
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-148
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-147
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-139
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-98
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	4e-90
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-89
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-88
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-84
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	4e-82
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-81
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-79
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	8e-77
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	9e-77
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-57
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-45
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-42
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	7e-42
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-39
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	9e-39
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-31
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-16
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-16
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-16
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-16
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-14
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-14
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-12
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	4e-10
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	6e-09
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-09
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  461 bits (1187), Expect = e-154
 Identities = 161/489 (32%), Positives = 236/489 (48%), Gaps = 79/489 (16%)

Query: 2   EKSGYGRDGIYRSLRPPLVLPSDPS----------------------------FSMFKSI 33
           + +    D I+RS  P + +P+  S                            +S    I
Sbjct: 38  QSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVI 97

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
             +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E++KQ K
Sbjct: 98  SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAK 157

Query: 94  DSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 149
            SN KL+IT     DK+K L     +  V +   + V            + F +L + + 
Sbjct: 158 ASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP------EGCLRFTELTQSTT 211

Query: 150 SVTD-IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA--HQELVGELDH 206
             ++ I  V +   D  AL YSSGTTG+ KGV+LTHK  + +        +  L    D 
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDD 271

Query: 207 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILA 266
           V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+LA
Sbjct: 272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA 331

Query: 267 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP 326
           +AK+S   K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE   P+   + 
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG-PVLAMSL 390

Query: 327 LVG----VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFE 376
                    +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +       P   
Sbjct: 391 GFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP--A 448

Query: 377 LTVNCNLFS----------YFRSNDHNDFF-----------CKLFQVAPAELEGLLVSHP 415
            T    +                 D +D              K FQVAPAELE LL+ HP
Sbjct: 449 ATAET-IDKDGWLHTGDIGLI---DDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHP 504

Query: 416 EILDAVVIP 424
           +I D  V+ 
Sbjct: 505 DITDVAVVA 513

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  446 bits (1149), Expect = e-154
 Identities = 154/482 (31%), Positives = 230/482 (47%), Gaps = 87/482 (18%)

Query: 9   DGIYRSLRPPLVLPSDP----------------------------SFSMFKSIVIKVSHS 40
           + I+RS  P + +P +                             +++  +    +V+  
Sbjct: 6   EFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASG 65

Query: 41  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 100
              +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S  KL+
Sbjct: 66  LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125

Query: 101 ITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 156
           IT    ++KVKD     ++  + + S                + F +L +   +  + P 
Sbjct: 126 ITQACYYEKVKDFARESDVKVMCVDSA-----------PDGCLHFSELTQADEN--EAPQ 172

Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCVLPM 214
           V +   D  AL YSSGTTG+ KGV+LTHK  I +                + V+LCVLPM
Sbjct: 173 VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPM 232

Query: 215 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 274
           FH++ L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  + 
Sbjct: 233 FHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD 292

Query: 275 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG----V 330
           K D+SSL+++ SG APLGKEL +  +   P A + QGYGMTE   P+             
Sbjct: 293 KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG-PVLAMCLAFAKEPFD 351

Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFELTVNCNLF 384
            + G+ GT+V   E +IV  +T   LP NQ GEI +RG  +       P  E T      
Sbjct: 352 IKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDP--EATSRT--- 406

Query: 385 SYFRSN-----------DHNDFF-----------CKLFQVAPAELEGLLVSHPEILDAVV 422
                            D +D              K FQVAPAELE LL++HPEI DA V
Sbjct: 407 --IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAV 464

Query: 423 IP 424
           + 
Sbjct: 465 VG 466

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  430 bits (1107), Expect = e-148
 Identities = 116/476 (24%), Positives = 193/476 (40%), Gaps = 70/476 (14%)

Query: 9   DGIYRSLRPPLVLPSDP-----------------------------SFSMFKSIVIKVSH 39
           + I    +P   +                                 S++ +      +  
Sbjct: 8   ENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGK 67

Query: 40  SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 99
           + ++ G+     + + + N   F I  +  + IG   +  N +YT+ EL   +  S P +
Sbjct: 68  ALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127

Query: 100 VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE----LSGSVTDIP 155
           V +  +  DKV  +      + +   +                  I+         +   
Sbjct: 128 VFSSKKGLDKVITV---QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184

Query: 156 DVSV-KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLP 213
            V V ++   A ++ SSG+TG+ KGV LTH+N +                    VL V+P
Sbjct: 185 TVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244

Query: 214 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
             H FG+   L   L  G  VV + KFD E  L+ ++ Y+ T   +VP +   L K+ L+
Sbjct: 245 FHHGFGMFTTLG-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL 303

Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 333
            K+D+S+L  + SG APL KE+ E   +      + QGYG+TET     +  P  G  + 
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPE-GDDKP 361

Query: 334 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFELTVNCNLFS-- 385
           G++G +V   +A+++ +DT K L PN+ GE+ V+GP +       P  E T         
Sbjct: 362 GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNP--EATKEL--IDEE 417

Query: 386 -YFRS------NDHNDFF----------CKLFQVAPAELEGLLVSHPEILDAVVIP 424
            +  +      ++   FF           K +QV PAELE +L+ HP I DA V  
Sbjct: 418 GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  428 bits (1103), Expect = e-147
 Identities = 124/485 (25%), Positives = 202/485 (41%), Gaps = 75/485 (15%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDP------------------------------SFSMF 30
           ME +      I +   P   L                                  +++ +
Sbjct: 1   MEDA----KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY 56

Query: 31  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 90
             + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y   EL  
Sbjct: 57  FEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLN 116

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE---- 146
            +  S P +V    +   K+ ++      L    K+      +      S +  +     
Sbjct: 117 SMNISQPTVVFVSKKGLQKILNV---QKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 173

Query: 147 -LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL- 204
                   +P+   +    A ++ SSG+TG+ KGV L H+                  + 
Sbjct: 174 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 233

Query: 205 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
           D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++    +VP + 
Sbjct: 234 DTAILSVVPFHHGFGMFTTLG-YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292

Query: 265 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 324
              AK++L+ K+D+S+L  + SG APL KE+ E   K      I QGYG+TET     L 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILI 351

Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFELT 378
            P  G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +       P  E T
Sbjct: 352 TPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNP--EAT 408

Query: 379 VNCNLFS---YFRS------NDHNDFF----------CKLFQVAPAELEGLLVSHPEILD 419
                     +  S      ++   FF           K +QVAPAELE +L+ HP I D
Sbjct: 409 NAL--IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFD 466

Query: 420 AVVIP 424
           A V  
Sbjct: 467 AGVAG 471

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  407 bits (1048), Expect = e-139
 Identities = 110/434 (25%), Positives = 187/434 (43%), Gaps = 51/434 (11%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F     +  K++      G+ K + V +  PNSI + +    +  + A     NP+Y  
Sbjct: 54  NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKS 113

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            EL   + DS    ++    L++  K +          +K     +     ++ S  +++
Sbjct: 114 FELEHILNDSEATTLVVHSMLYENFKPV---------LEKTGVERVFVVGGEVNSLSEVM 164

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           +      +   V+  + D A + Y+ GTTG+ KGV+LTH N  A +L ++    L     
Sbjct: 165 DSGSEDFENVKVNP-EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH--M 221

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 265
             ++  +PMFH     ++    +  GN  V MG F+ EM    IEKY+ T  W VPP + 
Sbjct: 222 DTIVGCMPMFHSAEFGLVNL-MVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALN 280

Query: 266 ALAKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQK------NIPGATIFQGYGMTET 317
            L        + +D S LK+  +GA P+   L+E   K      N P     Q +GMTE 
Sbjct: 281 VLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA 340

Query: 318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP---- 373
           C P+   NP + + +S + G  ++ +E +++S++  + L   + GEI +RGPN+      
Sbjct: 341 C-PMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK 399

Query: 374 -------VFELTVNCNLFSYFRSND-----HNDFF-----------CKLFQVAPAELEGL 410
                   +          +FR+ D        F             K + +AP ELE L
Sbjct: 400 REKENQECWWYDEKGR--KFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEAL 457

Query: 411 LVSHPEILDAVVIP 424
           L+ H  ++D  VI 
Sbjct: 458 LMKHEAVMDVAVIG 471

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  301 bits (774), Expect = 3e-98
 Identities = 108/438 (24%), Positives = 180/438 (41%), Gaps = 55/438 (12%)

Query: 16  RPPLVLPSDP--SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 73
           +  +   +    S++   +   +V++     G+   D V      S+   + +L  +  G
Sbjct: 18  KLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77

Query: 74  AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS 133
            +    N  YT+ EL   + D+ PK+V+  P   D +  +           KV ++    
Sbjct: 78  GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI---------AAKVGATVETL 128

Query: 134 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 193
                 S  D    +G+      +     D AA+LY+SGTTG SKG +L+H N  + SL 
Sbjct: 129 GPDGRGSLTDA--AAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLT 186

Query: 194 ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
           +  +       D V++  LP++H  GL V     L     ++ + KFD +  L  +   R
Sbjct: 187 LVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--R 242

Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
            TV   VP     L ++  + K     ++L  SG+APL  +   +      G  + + YG
Sbjct: 243 ATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSA-KTGHAVLERYG 301

Query: 314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
           MTET    S  NP  G R  G+ G  + GV A++   +T K LP   +G I V+GPN   
Sbjct: 302 MTETNMNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPN--- 356

Query: 374 VF------------ELTVNCNLFSYFRSND----HNDFFCKL------------FQVAPA 405
           VF            E   +     +F + D        +  +            F V P 
Sbjct: 357 VFKGYWRMPEKTKSEFRDD----GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPK 412

Query: 406 ELEGLLVSHPEILDAVVI 423
           E+E  + + P ++++ VI
Sbjct: 413 EIESEIDAMPGVVESAVI 430

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  280 bits (719), Expect = 4e-90
 Identities = 76/334 (22%), Positives = 145/334 (43%), Gaps = 16/334 (4%)

Query: 42  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 101
           + L   ++  V ++  NSI   I            +  N   T +E++ Q++  + +L+ 
Sbjct: 41  KRLKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIF 100

Query: 102 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL--SGSVTDIPDVSV 159
               L  +   +     +  +   ++++GL+  +  I        +    S ++I + S 
Sbjct: 101 CTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSF 160

Query: 160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG 219
              D A+++++SGTTG  K V  T +N  A+++            D   L VLP++H+ G
Sbjct: 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDR--DTNWLSVLPIYHISG 218

Query: 220 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS 279
           LSV+L   + +G  V  + KF+ E  L  I+  R+T   +VP  +  L +       +  
Sbjct: 219 LSVLLR-AVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ---QGLHEPY 274

Query: 280 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL 339
           +L+ +  G A L   ++E   +      I+  +GMTETC+      P +   R  + G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332

Query: 340 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
            A V+ +I + +          GE+ ++G NV  
Sbjct: 333 SANVDVKIKNPN------KEGHGELMIKGANVMN 360

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  279 bits (717), Expect = 2e-89
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 18/348 (5%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++   ++  + +     LGI K D V +  PNS+ F   F G   +GA+A   N     
Sbjct: 45  TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 104

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            E+S  + DS  K+VI        +  +         + +    G ++      S  +  
Sbjct: 105 PEVSFILSDSGSKVVIYGAPSAPVIDAI---------RAQADPPGTVTDWIGADSLAER- 154

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
            L  +  D P V     D   ++Y+SGTTG  KGV+ TH++  +A+   ++  ++     
Sbjct: 155 -LRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY--R 211

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 265
             +L  LPMFHV  L+ +++    +G  ++SM +FD       I + RV +   VP I+ 
Sbjct: 212 DRLLLPLPMFHVAALTTVIF-SAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILN 270

Query: 266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 325
            + +     + D    +   +G AP+ + L++          + QGY +TE+C   +L  
Sbjct: 271 FMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQGYALTESCGGGTLLL 328

Query: 326 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
               +R++GSAG      +  +   D        + GE+ ++   +  
Sbjct: 329 SEDALRKAGSAGRATMFTDVAVRGDDG-VIREHGE-GEVVIKSDILLK 374

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  277 bits (710), Expect = 2e-88
 Identities = 91/424 (21%), Positives = 170/424 (40%), Gaps = 39/424 (9%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++   +    + + + R LG+  ++ +L+   +++  P+ FLG +  G +   AN + T 
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
           ++    +  S+ + VI    L   V      A   G +  + S    S       F +L 
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEEL- 167

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
            +  +       +    D A  LYSSG+TG  KG + TH N    + + +     + E D
Sbjct: 168 -IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND 226

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPII 264
            VV     +F  +GL   L   L  G   + M  +   +     + ++R TV++ VP + 
Sbjct: 227 -VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285

Query: 265 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 324
             +  +  +      ++++  S    L +E+ E    +  G  I  G G TE    I L 
Sbjct: 286 ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEM-LHIFLS 343

Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFELT 378
           N   G    G+ G  V G E ++   +    +P  ++G+++++GP+           E +
Sbjct: 344 NRA-GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNR--EKS 399

Query: 379 VNCNLFSYFRSND--HND----FFCKLFQ-------------VAPAELEGLLVSHPEILD 419
               L  + RS D         +    +              V+P E+E +LV H  +L+
Sbjct: 400 RATFLGEWIRSGDKYCRLPNGCYV---YAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLE 456

Query: 420 AVVI 423
           A V+
Sbjct: 457 AAVV 460

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  264 bits (678), Expect = 7e-84
 Identities = 80/350 (22%), Positives = 133/350 (38%), Gaps = 25/350 (7%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +   + +   +++      G+   D V I + N          V  IGAI    N     
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNA 92

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHD 143
            E++  + D  P +V+   +  D V  +  +L  V              +       F  
Sbjct: 93  DEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKK----------AYAIGDGSGPFAP 142

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
             +L+   T          D   +++++   G  +G +++  N + A   +     L   
Sbjct: 143 FKDLASD-TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTE- 200

Query: 204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 263
              V L +LP+FHV GL ++L    Q G   V   KFD   A R IE ++VTV     P+
Sbjct: 201 -ADVNLGMLPLFHVTGLGLMLT-LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPM 258

Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
           +  +          ++SL+ V     P   E  E      P AT +  +G +ET    + 
Sbjct: 259 LGNILDQ--AAPAQLASLRAVTGLDTPETIERFEAT---CPNATFWATFGQSETSGLSTF 313

Query: 324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 373
                   R  SAG  +      +V  +  +PLPP ++GEI +RGP V  
Sbjct: 314 ---APYRDRPKSAGRPLFWRTVAVVDAED-RPLPPGEVGEIVLRGPTVFK 359

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  260 bits (666), Expect = 4e-82
 Identities = 82/435 (18%), Positives = 158/435 (36%), Gaps = 69/435 (15%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           + +  ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP    
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90

Query: 86  SELSKQVKDSNPKLVITV--PELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 143
           +EL++ +K       +     ++ D +      A ++   D V      S          
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYG-------- 142

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
                     I D   +    A + Y+SGTTG+ K  I+  +   +  L +S    L   
Sbjct: 143 --------PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG 194

Query: 204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 263
             +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P  
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254

Query: 264 ILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 321
           + ALA           + SL+ V    A +   ++E   +++        YG TE     
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA-MNS 312

Query: 322 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDT--LKPLPPNQLGEIWVRGPNVTPVFELTV 379
                     ++G+        E +IV +     + +   + GE+ V             
Sbjct: 313 LYMRQ----PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAAS---------- 358

Query: 380 NCNLFSY---------------FRSND----HNDFFCKL------------FQVAPAELE 408
           +     Y               +R++D      +   ++              + P+E+E
Sbjct: 359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418

Query: 409 GLLVSHPEILDAVVI 423
            +L + P + + VVI
Sbjct: 419 RVLGTAPGVTEVVVI 433

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  258 bits (662), Expect = 2e-81
 Identities = 95/413 (23%), Positives = 163/413 (39%), Gaps = 73/413 (17%)

Query: 45  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 104
            I     V ++A  ++   +  +  +  G  A   NP     EL+  + DS P LV+  P
Sbjct: 64  RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123

Query: 105 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 164
           +         L  V +                             +   +P+      D 
Sbjct: 124 DAELPPALGALERVDVDV--------------------------RARGAVPEDGADDGDP 157

Query: 165 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 224
           A ++Y+SGTTG  KG ++  +        ++   +  G  + V++  LP+FHV GL + +
Sbjct: 158 ALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG--EDVLVQGLPLFHVHGLVLGI 215

Query: 225 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF---DISSL 281
              L++G  V  +G+F  E A R +     T+ + VP +   +A+           ++  
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAKALAGA 274

Query: 282 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA 341
           +L+ SG+A L     E       G  + + YGMTET    S      G  R+G+ G  + 
Sbjct: 275 RLLVSGSAALPVHDHERIAA-ATGRRVIERYGMTETLMNTS--VRADGEPRAGTVGVPLP 331

Query: 342 GVEAQIVSVDT--LKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYF 387
           GVE ++V  D   +  L    +GEI VRGPN   +F              T +     +F
Sbjct: 332 GVELRLVEEDGTPIAALDGESVGEIQVRGPN---LFTEYLNRPDATAAAFTED----GFF 384

Query: 388 RSND----HNDFFCKL-------------FQVAPAELEGLLVSHPEILDAVVI 423
           R+ D      D + ++             +++   E+E  L+ HPE+ +A V 
Sbjct: 385 RTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVT 437

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  256 bits (656), Expect = 2e-79
 Identities = 84/436 (19%), Positives = 143/436 (32%), Gaps = 60/436 (13%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+         ++ S R  GI   +  L+   N     I F  ++ +G     A   +  
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SGLISRSSKIVSFHD 143
           SEL+       P L+I   +        +    L     + SS     +   S   +  D
Sbjct: 112 SELNAYASQIEPALLIADRQH----ALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD 167

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
              ++    D         + A    S GTTG  K +  TH ++  +        +    
Sbjct: 168 A--INHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQ- 224

Query: 204 LDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
                LC +P  H + +S          G  VV        +    IEK++V V  +VPP
Sbjct: 225 -QTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPP 283

Query: 263 IILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
            +     A      +  ++SLKL+  G A L   L       I G  + Q +GM E    
Sbjct: 284 AVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEG-LV 341

Query: 321 ISLENPLVGVRRSGSAGT-LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTV 379
                     +   + G  +    E  +   +   PLP  ++G +  RGP          
Sbjct: 342 NYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGPYTFR------ 394

Query: 380 NCNLFSYFRSNDHN--------------------DFFCKL------------FQVAPAEL 407
                 Y++S  HN                    + +  +             ++A  E+
Sbjct: 395 -----GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEI 449

Query: 408 EGLLVSHPEILDAVVI 423
           E LL+ HP ++ A ++
Sbjct: 450 ENLLLRHPAVIYAALV 465

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  247 bits (633), Expect = 8e-77
 Identities = 88/425 (20%), Positives = 159/425 (37%), Gaps = 38/425 (8%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+     +   ++      G+ K D  L+  PN   F I F  ++  G +   A   +  
Sbjct: 57  SYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQ 116

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
            EL+  +K   PKL+I      +   +      L           +++  +      D I
Sbjct: 117 YELNAFIKQIQPKLLI-GSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWI 175

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           E + + T +   S    + A    S G+TG  K +  TH ++  +    +    L    +
Sbjct: 176 E-TPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNS--N 232

Query: 206 HVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
             +LC LP  H F LS       L  G CVV     +       I++++V +  +VP  +
Sbjct: 233 TRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAV 292

Query: 265 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 324
           +   + +   K  I SLKL+  G A   + L     + +    + Q +GM E        
Sbjct: 293 IMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEG-LVNYTR 350

Query: 325 NPLVGVRRSGSAGTLVAGV-EAQIVSVDTLKPLPPNQLGEIWVRGPNV------TPVFEL 377
                 +   + G  ++   E +IV     + +P  ++G +  RGP        +P  E 
Sbjct: 351 LDDSDEQIFTTQGRPISSDDEIKIVDEQY-REVPEGEIGMLATRGPYTFCGYYQSP--EH 407

Query: 378 TVNCNLFS---YFRSND----HNDFFCKL------------FQVAPAELEGLLVSHPEIL 418
                 F    Y+ S D      D   ++             ++A  E+E L++ HPE++
Sbjct: 408 NSQV--FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVM 465

Query: 419 DAVVI 423
            A ++
Sbjct: 466 HAALV 470

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  247 bits (632), Expect = 9e-77
 Identities = 95/437 (21%), Positives = 170/437 (38%), Gaps = 66/437 (15%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+    +   +++  F+ LGI +KD V++  PN   F      +  +GA+   A P +  
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
           SE++   + +     I      D     +  ++    + K+ +   I  + +   F  L 
Sbjct: 112 SEITYFCEFAEAAAYIIP----DAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           +L      +P+V    +D A L  S G+TG+SK +  TH ++I +         L     
Sbjct: 168 DLHTEPVKLPEVKS--SDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--S 223

Query: 206 HVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
            V L  LPM H + LS   +   L  G  VV       + A   IE+ +VT+  +VPP+ 
Sbjct: 224 TVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLA 283

Query: 265 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCA 319
           +     +  R+ D+SSL+++  G A    E     +    G T+ Q +GM E     T  
Sbjct: 284 MVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRL 342

Query: 320 PISLENPLVGVRRSGSAGT-LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELT 378
               E          + G  +    E+++      + + P + G +  RGP         
Sbjct: 343 DDPEE------IIVNTQGKPMSPYDESRVWDDHD-RDVKPGETGHLLTRGPYTIR----- 390

Query: 379 VNCNLFSYFRSNDHN--------------------DFFCKL------------FQVAPAE 406
                  Y+++ +HN                    D +  +             +VA  E
Sbjct: 391 ------GYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444

Query: 407 LEGLLVSHPEILDAVVI 423
           +E  L++HP + DA ++
Sbjct: 445 VENHLLAHPAVHDAAMV 461

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  195 bits (499), Expect = 5e-57
 Identities = 77/432 (17%), Positives = 156/432 (36%), Gaps = 51/432 (11%)

Query: 26  SFSMFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 84
           +F        + ++      G+ + D V +  P    + +  LG I  G I         
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 85  VSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFH 142
            +++  +++ S  K ++   E+  +V  +    P++    + K+  S         ++F 
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSL----RIKLLVSE--KSCDGWLNFK 188

Query: 143 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
            L+    + T    V     +A+A+ ++SGT+G+ K    ++ +    + M +    L  
Sbjct: 189 KLLN--EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGL-- 244

Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVV 260
           +   ++  +     +  +   L +    G C     + KFD  + L+ +  Y +      
Sbjct: 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGA 304

Query: 261 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
           P +   L +  L   +    L+   +    L  E +E+ +    G  I + YG TET   
Sbjct: 305 PIVYRMLLQQDL-SSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLT 362

Query: 321 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----- 375
                      + G  GT  +  + QI+       LPP   G+I +R   + P+      
Sbjct: 363 CM--VSKTMKIKPGYMGTAASCYDVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 376 ----ELTVNCNLFSYFRSND--HND----FFCKLFQ-------------VAPAELEGLLV 412
               + T       ++   D    D    F    F              + P+E+E  L+
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRGIKDEDGYFQ---FMGRADDIINSSGYRIGPSEVENALM 476

Query: 413 SHPEILDAVVIP 424
            HP +++  VI 
Sbjct: 477 EHPAVVETAVIS 488

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  164 bits (418), Expect = 2e-45
 Identities = 92/451 (20%), Positives = 163/451 (36%), Gaps = 83/451 (18%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +F   K    K ++ F   GI K D V++   +   F  C LG+  +GAIA  A  +   
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147

Query: 86  SELSKQVKDSNPKLVITVPE--LWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSF 141
            ++  +++ +  K+++ + E  + ++V +       + L    K    G        + F
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPL---KKAKVGG--DVLEGWIDF 202

Query: 142 HDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ- 198
              +E S  + + P  +VS K  D   + +SSGT G  K V   +      +  +     
Sbjct: 203 RKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN------TYPLGHILT 256

Query: 199 -ELVGEL--DHVVLCV-----LPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRA 248
            +    +  D +   V             +   LY Q   G  V      +F+ +  L  
Sbjct: 257 AKYWQNVEDDGLHYTVADSGW-----GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK 311

Query: 249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 308
             KY VT +   P I   L K  L   ++ S+LK       PL  E+     +   G  +
Sbjct: 312 ASKYGVTTFCAPPTIYRFLIKEDL-SHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKL 369

Query: 309 FQGYGMTETCAPISLENPLVGVR-RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR 367
            +G+G TET   I+       +  + GS G    G + +++  D  +     + GEI + 
Sbjct: 370 MEGFGQTETVVTIA---TFPWMEPKPGSIGKPTPGYKIELMDRDG-RLCEVGEEGEIVIN 425

Query: 368 GPNVTPVF---------ELTVNCNLFS----------------YF----RSNDHNDFFCK 398
                PV          E T     +                 Y     R++D       
Sbjct: 426 TMEGKPVGLFVHYGKDPERTEET--WHDGYYHTGDMAWMDEDGYLWFVGRADD------- 476

Query: 399 LFQVA-----PAELEGLLVSHPEILDAVVIP 424
           + + +     P E+E  L+ HP +L+  +  
Sbjct: 477 IIKTSGYKVGPFEVESALIQHPAVLECAITG 507

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  154 bits (390), Expect = 3e-42
 Identities = 66/366 (18%), Positives = 117/366 (31%), Gaps = 58/366 (15%)

Query: 50  DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY---TVSELSKQVKDSNPKLVITVPEL 106
           D V+I AP  + + + FLG +  G IA   +      T       + DS+P  ++T    
Sbjct: 83  DRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA 142

Query: 107 WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA 166
            D V                            +   DL++L            +    A 
Sbjct: 143 VDDVVQHVARRPGESPPS--------------IIEVDLLDLDAP-NGYTFKEDEYPSTAY 187

Query: 167 LLYSSGTTGVSKGVILTHKNFIAASLMIS----AHQELVGELDHVVLCVLPMFHVFGLSV 222
           L Y+SG+T    GV+++H+N       +     A  + +   +  ++  LP +H  GL +
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI 247

Query: 223 ILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA----KNSLVR 274
            +   +  G   V              +  +           P     LA     +  + 
Sbjct: 248 GICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAA-PNFAFELAARRTTDDDMA 306

Query: 275 KFDISSLKLVGSGAAPLGKELMED-CQK----NIPGATIFQGYGMTETCAPIS------- 322
             D+ ++  + SG+  +    ++    +    N+    I   Y + E    ++       
Sbjct: 307 GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQP 366

Query: 323 ----------LENPLVGVRRSGSAGTLV-----AGVEAQIVSVDTLKPLPPNQLGEIWVR 367
                     L          G A +L+          +IV  DT    P   +GEIWV 
Sbjct: 367 PETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVH 426

Query: 368 GPNVTP 373
           G NV  
Sbjct: 427 GDNVAN 432

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  154 bits (392), Expect = 7e-42
 Identities = 74/379 (19%), Positives = 128/379 (33%), Gaps = 62/379 (16%)

Query: 37  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY------TVSELSK 90
           ++ + +  G    D VL+     +     FLG +  G IA    P+Y       + +  +
Sbjct: 53  IAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAV---PIYPPAQEKLLDKAQR 109

Query: 91  QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 150
            V +S P +V+ + +   K     L                       ++   +     S
Sbjct: 110 IVTNSKPVIVLMIADHIKKFTADELNTNPKF------------LKIPAIALESIELNRSS 157

Query: 151 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 210
                 +     D A L Y+SG+T   KGV+++H N +     I     +  +   +   
Sbjct: 158 SWQPTSIK--SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSW 214

Query: 211 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILA 266
            LP  H  GL   +   +  G   + M  F         L+ I KY+ T+    P     
Sbjct: 215 -LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYD 272

Query: 267 LA----KNSLVRKFDISSLKLVGSGAAPLGKELMED-----CQKNIPGATIFQGYGMTET 317
                 +       D+SS     +GA P+ +E ME       +        +  YG+ E 
Sbjct: 273 YCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEA 332

Query: 318 CAPIS-----------------LENPLVGVRRSGSAGTL------VAGVEAQIVSVDTLK 354
              ++                  ++  V      S G+           E +I+  DTL 
Sbjct: 333 TLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLI 392

Query: 355 PLPPNQLGEIWVRGPNVTP 373
           P   +Q+GEIWV+  +V  
Sbjct: 393 PCDFDQVGEIWVQSNSVAK 411

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  145 bits (369), Expect = 9e-39
 Identities = 76/356 (21%), Positives = 140/356 (39%), Gaps = 35/356 (9%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
             ++    R LG+   D V     N       +  V  +GA+  TANP  +  E++  + 
Sbjct: 57  ARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILN 116

Query: 94  DSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSGLISRSSKIVSFHDLIEL 147
            +  K+++  P L   V+ +   L  V    ++  K               +++ + +  
Sbjct: 117 HAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA----------PEGYLAYEEALGE 166

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHV 207
                 +P+       A  + Y++GTTG+ KGV+ +H+  +  SL  S           V
Sbjct: 167 EADPVRVPE-----RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV 221

Query: 208 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 267
           VL V+PMFHV    +     L     V+   + D    +   +   VT    VP + LAL
Sbjct: 222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL 281

Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL 327
           A         + +L+ +  G +   + L+   ++   G  + QGYG+TET   +      
Sbjct: 282 ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVK 339

Query: 328 VG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVT 372
                      +      G  +  V  ++   +  +P+P +   LGE+ ++GP +T
Sbjct: 340 SHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWIT 394

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score =  123 bits (309), Expect = 1e-31
 Identities = 41/263 (15%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 136 SKIVSFHDLIELSGSVTDIPD--------VSVKQTDAAALLYSSGTTGVSKGVILTHKNF 187
             + + +DL + S     +            +       +  S GTTG  K V+      
Sbjct: 57  KDVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWI 116

Query: 188 IA-ASLMISAHQELVGELDHVVLCVLPMF-HVFGLSVILYDQLQKGNCV----------- 234
            A  S  +S +Q   G      L  +P   H+ G           G              
Sbjct: 117 EALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKR 176

Query: 235 -VSMGKFD---------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 284
            +S G            ++     +    +      PP++  L K   V      SL  +
Sbjct: 177 SLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQI 236

Query: 285 GSGAAPLGKELMEDCQKNI-PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV 343
             G   L  + ++     I P       YG T     +S    +    +     +    +
Sbjct: 237 TLGGTELNLDEIKFIASEILPDCEFSASYGSTSAL-GVSRSLLITSESQQVIYDSFSPFI 295

Query: 344 EAQIVSVDTLKPLPPNQLGEIWV 366
              +V   T + +   + G + V
Sbjct: 296 TYDVVDSITAQTVEYGERGNVIV 318

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 82/426 (19%), Positives = 139/426 (32%), Gaps = 78/426 (18%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 94
              +  G  K  VV ++   S+   I  LGV+  GA    A    +P      +S  + D
Sbjct: 504 RRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA----AYLPVDPKLPEDRISYMLAD 559

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           S    ++T  E+ ++  +L      L                    F D           
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTL--------------------FIDDQTRFEEQASD 599

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
           P  ++   D A ++Y+SGTTG  KG I TH N     L+         + D   L V   
Sbjct: 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANI--QGLVKHVDYMAFSDQD-TFLSVSN- 655

Query: 215 FHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 270
            + F       Y  +     ++        D E     I +  V V +    +   L   
Sbjct: 656 -YAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714

Query: 271 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET--CAPISLENPLV 328
                  +  L+ +  G        +    + +    +   YG TE    A   + + L 
Sbjct: 715 GEDW---MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP 771

Query: 329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFELT---- 378
               S   G  ++     I++ +  +  P   +GE+ + G  V+         +LT    
Sbjct: 772 DSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRA--DLTKEKF 828

Query: 379 VNCNLFS-----YFRSND--------------HNDFFCKL--FQVAPAELEGLLVSHPEI 417
           +  N F      Y R+ D                D   K+   ++   E+E  L  +P +
Sbjct: 829 IE-NPFKPGETLY-RTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGV 886

Query: 418 LDAVVI 423
            DAVV+
Sbjct: 887 KDAVVV 892

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 68/347 (19%), Positives = 122/347 (35%), Gaps = 46/347 (13%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 94
           H         +  ++++        I FLG +  G     A    +       + +  ++
Sbjct: 41  HWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGH----AYIPVDLSIPADRVQRIAEN 96

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           S  KL+++   +   V DL +  V                     +  D+       T  
Sbjct: 97  SGAKLLLSATAV--TVTDLPVRIVSE------------------DNLKDIFFTHKGNTPN 136

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLP 213
           P+ +VK  +   ++Y+SG+TG  KGV +T+   +  S    A ++  +     V L   P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQ-VFLNQAP 193

Query: 214 MFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 269
               F LSV+ +Y  L  G  +           +    ++E+  + VW   P        
Sbjct: 194 F--SFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251

Query: 270 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISLE 324
            +   +  + ++K        L  E+     +  P ATI   YG TE     T   ++ E
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE 311

Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
                  +S   G   +     I+  D     P  + GEI + GP+V
Sbjct: 312 VL--DQYKSLPVGYCKSDCRLLIMKED-GTIAPDGEKGEIVIVGPSV 355

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 79.5 bits (197), Expect = 3e-16
 Identities = 80/431 (18%), Positives = 134/431 (31%), Gaps = 84/431 (19%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 94
                L +  K  VL+F   +      F+ +   G     A    +       +   ++ 
Sbjct: 44  AFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGH----AYIPVDVHSAPERILAIIEI 99

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           + P L+I + E    ++ ++L ++                        +  +L+    + 
Sbjct: 100 AKPSLIIAIEEFPLTIEGISLVSLSE---------------------IESAKLAEMPYE- 137

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMISAHQELVGELDHVVLCV 211
              SVK  D   ++++SGTTG  KGV ++H    +F     MI      V +    +L  
Sbjct: 138 RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNW--MIEDAAFDVPKQP-QMLAQ 194

Query: 212 LPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 267
            P    F LSV+     L  G  +         D +     I +  V +W   P      
Sbjct: 195 PPY--SFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252

Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPIS 322
             +    +  + +L         L         +  P A I   YG TE     +   I+
Sbjct: 253 MLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEIT 312

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGEIWVRGPNVT------PVF 375
            E            G         I  +D   K L   + GEI V GP V+      P  
Sbjct: 313 REMV--DNYTRLPIGYPKPDSPTYI--IDEDGKELSSGEQGEIIVTGPAVSKGYLNNP-- 366

Query: 376 ELT----VNCNLFS--YFRSND--------------HNDFFCKL--FQVAPAELEGLLVS 413
           E T             Y  + D                DF  K   +++   ++   L  
Sbjct: 367 EKTAEAFFT-FKGQPAY-HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424

Query: 414 HPEILDAVVIP 424
            P +  AV +P
Sbjct: 425 SPMVASAVAVP 435

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 79.1 bits (196), Expect = 4e-16
 Identities = 81/429 (18%), Positives = 146/429 (34%), Gaps = 84/429 (19%)

Query: 39  HSFRHLGITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVK 93
            + +     +K   +L++     H  + FLG +  G          +       ++K ++
Sbjct: 41  AAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGH----PYIPVDLSIPSERIAKIIE 96

Query: 94  DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 153
            S  +L+I    L        +  V                        + +  +   + 
Sbjct: 97  SSGAELLIHAAGLSIDAVGQQIQTVSA----------------------EELLENEGGSV 134

Query: 154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMISAHQELVGELDHVVLC 210
             D  VK+ +   ++Y+SG+TG  KGV ++     +F     + +     V     + L 
Sbjct: 135 SQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDW--ICADFP--VSGGK-IFLN 189

Query: 211 VLPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILA 266
             P    F LSV+ LY  LQ G  +           ++    ++K  + VW   P  +  
Sbjct: 190 QAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247

Query: 267 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPI 321
              +    +  +            L   + +   +  P A IF  YG TE     T   I
Sbjct: 248 CLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307

Query: 322 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVF 375
           + +        S   G     +   I+  +  +PLP  + GEI + GP+V+      P  
Sbjct: 308 TNDVI--SRSESLPVGFAKPDMNIFIMDEE-GQPLPEGEKGEIVIAGPSVSRGYLGEP-- 362

Query: 376 ELT----VNCNLFS--YFRSND-------------HNDFFCKL--FQVAPAELEGLLVSH 414
           ELT     + +     Y R+ D               DF  KL  +++   E+E  +   
Sbjct: 363 ELTEKAFFS-HEGQWAY-RTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420

Query: 415 PEILDAVVI 423
             +  AVVI
Sbjct: 421 QYVRSAVVI 429

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 56/351 (15%), Positives = 110/351 (31%), Gaps = 54/351 (15%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 94
           +   H  +     + +    S+      +G++  G                   S  ++D
Sbjct: 70  NLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGN----TYVPIEAGLPNDRKSFLLRD 124

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           S   +       +D V+      VL                           LS   T  
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIE-----------------NLSTQDTSD 167

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP- 213
              +  +   A LLY+SG+TG  KGV ++  N  +      A  +L+G +    L +   
Sbjct: 168 ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSS---FSDAWGKLIGNVAPKSLELGGV 224

Query: 214 ----MFH--VFGLSVI-LYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIIL 265
                     F + +  ++   + G C V+  +  +   L R   +  VT   +VP    
Sbjct: 225 GKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVP---- 280

Query: 266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAP 320
           +L   + +   D   L  +G G   +     +    +     +   YG TE     +   
Sbjct: 281 SLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGR 339

Query: 321 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
           I  ++           G  +    A +++  + + +     GE+ + G  V
Sbjct: 340 ILPDSDTR------CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLV 384

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 85/431 (19%), Positives = 143/431 (33%), Gaps = 94/431 (21%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVI-AIGA---IASTANPVYTVSELSKQVKD 94
             F   GI K  +V I    SI   I  L V+ A GA   I    +  Y    +   + D
Sbjct: 79  RIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI----DIEYPKERIQYILDD 134

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
           S  ++++T   L   + ++     +                       +   +       
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEIF--------------------EEDTIKIREGTN 174

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--VGELDHVVLCVL 212
             V  K TD A ++Y+SGTTG  KG +L HK       +    +    V E D  +    
Sbjct: 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISN---LKVFFENSLNVTEKD-RIGQFA 230

Query: 213 PMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 268
            +   F  SV  ++  L  G  +         D     + I +  +TV  + P  ++ L 
Sbjct: 231 SI--SFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD 288

Query: 269 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISL 323
              +       S++ + +  +     L+   +      T    YG TE     T    + 
Sbjct: 289 PERI------LSIQTLITAGSATSPSLVNKWK---EKVTYINAYGPTETTICATTWVATK 339

Query: 324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT------PVFEL 377
           E     V      G  +   +  IV  + L+     + GE+ + G  +       P  EL
Sbjct: 340 ETIGHSV----PIGAPIQNTQIYIVDEN-LQLKSVGEAGELCIGGEGLARGYWKRP--EL 392

Query: 378 T----VNCNLFS-----YFRSND--------------HNDFFCKL--FQVAPAELEGLLV 412
           T    V+ N F      Y ++ D                D   K+   +V   E+E +L+
Sbjct: 393 TSQKFVD-NPFVPGEKLY-KTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL 450

Query: 413 SHPEILDAVVI 423
            H  I +  V 
Sbjct: 451 KHMYISETAVS 461

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 67.9 bits (167), Expect = 2e-12
 Identities = 64/430 (14%), Positives = 119/430 (27%), Gaps = 91/430 (21%)

Query: 39  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 94
                        + ++   S     C L ++  G          +     +  ++  + 
Sbjct: 67  DYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH----HYLYIDLKQPAAWNAELCRQ 122

Query: 95  SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 154
            + +L++           L  P V                         +  L  +   +
Sbjct: 123 VDCRLILDCSTTPTPANGL--PCV------------------------PVRHLPAAPASV 156

Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
                     A + +SSGTTG  K +  TH       L +              L   P 
Sbjct: 157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAG--ITRLCLGQSFLAFAPQM-RFLVNSP- 212

Query: 215 FHVFGLSVI-LYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 271
              F  + + ++  L  G C V   +G  D  +  + I +      W+   +   L    
Sbjct: 213 -LSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD 271

Query: 272 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISLENP 326
                 +  L+ + +G   L    +       P   +  GYG TE      C  ++    
Sbjct: 272 PDC---LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVT---D 325

Query: 327 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWVRGPNVT------PVFELT- 378
                     G  +AG    ++  +  + +  P++ GEI   G  +            T 
Sbjct: 326 DDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDA--ARTR 382

Query: 379 ---VNCNLFS------YFRSND--------------HNDFFCKL--FQVAPAELEGLLVS 413
              V    +       Y R+ D                D   KL  +++    LE     
Sbjct: 383 ASFVELP-YRGRLLRAY-RTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440

Query: 414 HPEILDAVVI 423
            P ILD  ++
Sbjct: 441 QPGILDCALL 450

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 56/289 (19%)

Query: 34  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 93
           V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++   ++  + 
Sbjct: 117 VCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176

Query: 94  DSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSF------- 141
           DS+ +LVIT  E     + + L      A+   +   V    ++ R+   + +       
Sbjct: 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236

Query: 142 -HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI-----------LTHKNFIA 189
             DLIE   +  +    ++   D   +LY+SG+TG  KGV+            T K    
Sbjct: 237 WRDLIE--KASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY--- 291

Query: 190 ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV---------SMGKF 240
               +  +         +  C   +  V G S +LY  L  G   +         +  + 
Sbjct: 292 ----VFDYHP-----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342

Query: 241 -DIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGS 286
             +      ++K++V + +  P  I AL    +  +   D SSL+++GS
Sbjct: 343 CQV------VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 385

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 170 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVF--GLSVILY 225
           SSGTTG    ++ +    +  A  +    +   + + D         + +F  GL     
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSS--GYGMFTGGL--GFQ 149

Query: 226 DQLQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLK 282
              ++ G   V     + +  ++ I  ++ T    +P   + LA+       D   ++LK
Sbjct: 150 YGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLK 209

Query: 283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA 341
            +  GA P   E     ++ +     +  +GMTE   P ++ E            G    
Sbjct: 210 TLVIGAEPHTDEQRRKIER-MLNVKAYNSFGMTEMNGPGVAFECQ-------EQNGMHFW 261

Query: 342 --GVEAQIVSVDTLKPLPPNQLGEI 364
                 +I+  +T +P+P  ++GE+
Sbjct: 262 EDCYLVEIIDPETGEPVPEGEIGEL 286

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 17/203 (8%)

Query: 170 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 227
           SSGTTG    V  T    +  A  +  S         D V +         GL    +  
Sbjct: 98  SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL--GAHYG 155

Query: 228 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 284
            ++ G  V+  G    E  ++ I+ +R  +  V P  +L++A     +  D   SSL++ 
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIG 215

Query: 285 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA-- 341
             GA P   ++    ++ + G      YG++E   P ++ E            G  +   
Sbjct: 216 IFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECV------ETKDGPTIWED 268

Query: 342 GVEAQIVSVDTLKPLPPNQLGEI 364
               +I+  +T + LP  +LGE+
Sbjct: 269 HFYPEIIDPETGEVLPDGELGEL 291

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 17/203 (8%)

Query: 170 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 227
           SSGTTG    V  T +  +  A     S         D +           GL   ++  
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL--GIHYG 157

Query: 228 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 284
            ++ G  VV M     E  ++ I  +   +  V P  +L L    + +  D   SSLK+ 
Sbjct: 158 AERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIG 217

Query: 285 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA-- 341
             GA P  + L  + +  + G      YG++E   P ++ E            G ++   
Sbjct: 218 IFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECV------ETKDGPVIWED 270

Query: 342 GVEAQIVSVDTLKPLPPNQLGEI 364
               +I+   T + LP    GE+
Sbjct: 271 HFYPEIIDPVTGEVLPDGSQGEL 293

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 9e-05
 Identities = 67/500 (13%), Positives = 131/500 (26%), Gaps = 159/500 (31%)

Query: 39  HSFRHLGI-------TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 91
           H   H+           KD++ +F          F+       +      + +  E+   
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDA-------FVDNFDCKDVQDMPKSILSKEEIDHI 54

Query: 92  VKDSNPKLVI-------------TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 138
           +   +                   V +  ++V  +N     L S  K         +   
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMY 112

Query: 139 VSFHDLIELSGSVTDIPDVSVKQTDA-----AALLYSSGTTGVSKGVILTH------KNF 187
           +   D   L          +V +         ALL        +K V++        K +
Sbjct: 113 IEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELR----PAKNVLI-DGVLGSGKTW 165

Query: 188 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI--------------LYDQLQKGNC 233
           +A  +           L + V C +  F +F L++               L  Q+     
Sbjct: 166 VALDVC----------LSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 234 VVSMGKFDIEMALRAIEKY--RVTVWWVVPP--IILALAKNS-LVRKFDISSLKLVGSGA 288
             S    +I++ + +I+    R+          ++L   +N+     F++S   L+ +  
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 289 APLGKELMEDCQKNIPGATIFQGYGMTET---------CAPISL--E----NPLVGVRRS 333
             +   L      +I            E          C P  L  E    NP       
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR----- 329

Query: 334 GSAGTLVAGVEAQI-----------------------VSVDTLKP--------------- 355
                 ++ +   I                        S++ L+P               
Sbjct: 330 ------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 356 ---LPPNQLGEIWVRGPNVTPVFELTVN-CNLFS-------YFRSNDHNDFFCKLFQVAP 404
              +P   L  IW           + VN  + +S           +  +     ++    
Sbjct: 384 SAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLVEKQPKESTISIPS-----IYLELK 436

Query: 405 AELEGLLVSHPEILDAVVIP 424
            +LE     H  I+D   IP
Sbjct: 437 VKLENEYALHRSIVDHYNIP 456

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 33/170 (19%)

Query: 44  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKL 99
           +G+ K D V ++ P      I  L +  IGAI S    V    ++ + L  ++ D + K+
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHS----VVFAGFSSNSLRDRINDGDSKV 189

Query: 100 VITVPELWDKVKDLNLPAVL---LGSKDKVSSSGLISRSSKI---------VSFHDLIEL 147
           VIT  E     K +    ++   L     V    +  +++           + +    + 
Sbjct: 190 VITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK- 248

Query: 148 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI-----------LTHKN 186
               T  P   V   D   LLY+SG+TG  KGV            LT + 
Sbjct: 249 -KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 269 KNSLVRKFDISSLKLVGSGAAP-LG-KELME 297
           K +L +K   +SLKL    +AP L  K  ME
Sbjct: 19  KQAL-KKLQ-ASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.98
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.36
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.25
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.03
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	94.22
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.97
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.85
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	85.61
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	82.47
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	82.03
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	80.66

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.4e-66  Score=508.59  Aligned_cols=400  Identities=37%  Similarity=0.574  Sum_probs=337.5

Q ss_pred             cCCCCCCC---CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHH
Q 014435           14 SLRPPLVL---PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK   90 (424)
Q Consensus        14 ~~~~~~~~---~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~   90 (424)
                      ++++++..   .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+
T Consensus        36 p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~  115 (536)
T 3ni2_A           36 SSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAK  115 (536)
T ss_dssp             TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHH
T ss_pred             CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHH
Confidence            44444432   356999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEcccchHHHhcCCC--CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEe
Q 014435           91 QVKDSNPKLVITVPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  168 (424)
Q Consensus        91 ~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  168 (424)
                      +++.++++++|++++....+.....  ...++..+.         .......++++.....  ...+.....++|+++|+
T Consensus       116 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~  184 (536)
T 3ni2_A          116 HAKASRAKLLITQACYYEKVKDFARESDVKVMCVDS---------APDGCLHFSELTQADE--NEAPQVDISPDDVVALP  184 (536)
T ss_dssp             HHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSC---------CCTTCEETHHHHTSCG--GGCCCCCCCTTSEEECC
T ss_pred             HHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecC---------CCCCccCHHHHhhccc--cccccCCCCccCEEEEE
Confidence            9999999999999877665544311  111111111         1122334555544322  22334456789999999


Q ss_pred             cCCCCCCCcchhhhcHHHHHHHHHHHHhhh--hhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHH
Q 014435          169 YSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL  246 (424)
Q Consensus       169 ~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~  246 (424)
                      |||||||.||+|+++|+++...+.......  .+....++++++.+|++|.+++...++.++..|+++++.+.+++..++
T Consensus       185 ~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  264 (536)
T 3ni2_A          185 YSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLL  264 (536)
T ss_dssp             EECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHH
T ss_pred             cCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHH
Confidence            999999999999999999988765443221  112234589999999999999976788999999999999999999999


Q ss_pred             HHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecC-
Q 014435          247 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN-  325 (424)
Q Consensus       247 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~-  325 (424)
                      +.++++++|++.++|+++..+.+.......++++||.+++||+++++++.+++++.++++++++.||+||++++++... 
T Consensus       265 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~  344 (536)
T 3ni2_A          265 GLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA  344 (536)
T ss_dssp             HHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGG
T ss_pred             HHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccc
Confidence            9999999999999999999999988777778999999999999999999999999998899999999999987665432 


Q ss_pred             --CCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecC
Q 014435          326 --PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSN  390 (424)
Q Consensus       326 --~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~  390 (424)
                        ........+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+|++++|
T Consensus       345 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~d  424 (536)
T 3ni2_A          345 FAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDD  424 (536)
T ss_dssp             GSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTT
T ss_pred             cCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCC
Confidence              12224567899999999999999988899999999999999999999999             679999999999999


Q ss_pred             Cce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          391 DHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       391 g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       425 G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~  466 (536)
T 3ni2_A          425 DELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG  466 (536)
T ss_dssp             SCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred             ceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            987       3 999999999999999999999999999985

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2.1e-65  Score=501.77  Aligned_cols=393  Identities=28%  Similarity=0.435  Sum_probs=297.6

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++
T Consensus        47 ~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v  126 (550)
T 3rix_A           47 IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV  126 (550)
T ss_dssp             TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred             CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCC-----CCCCCCCCCCCCEEEEecC
Q 014435          101 ITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV-----TDIPDVSVKQTDAAALLYS  170 (424)
Q Consensus       101 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~T  170 (424)
                      |++++....+....     ...++.....        .......++.+++......     ...+.....++++++|+||
T Consensus       127 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T  198 (550)
T 3rix_A          127 FVSKKGLQKILNVQKKLPIIQKIIIMDSK--------TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS  198 (550)
T ss_dssp             EECGGGHHHHHHHHHHCTTCCEEEETTCS--------SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC
T ss_pred             EEcHHHHHHHHHHHhhCCCcceEEEEcCC--------ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEEC
Confidence            99988766554321     1222222111        1112334455554432211     1112222346889999999


Q ss_pred             CCCCCCcchhhhcHHHHHHHHHHHHhhhh-hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHH
Q 014435          171 SGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI  249 (424)
Q Consensus       171 SGtTG~pK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  249 (424)
                      |||||.||+|.++|+++............ .....++++++.+|++|.+|+. ..+.++..|+++++.+.+++..+++.+
T Consensus       199 SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i  277 (550)
T 3rix_A          199 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSL  277 (550)
T ss_dssp             -----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHH
T ss_pred             CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHHH
Confidence            99999999999999999877655443321 2223459999999999999985 677889999999999999999999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|+++++|+++..|.+.......++++||.+++||+++++++.+++.+.++...+++.||+||+++.++.....  
T Consensus       278 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--  355 (550)
T 3rix_A          278 QDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--  355 (550)
T ss_dssp             HHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--
T ss_pred             HHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--
Confidence            999999999999999999998877777899999999999999999999999999645699999999998877765544  


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce---
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN---  393 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~---  393 (424)
                      ....+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+|++++||.+   
T Consensus       356 ~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~  435 (550)
T 3rix_A          356 DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV  435 (550)
T ss_dssp             CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC
T ss_pred             CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEE
Confidence            4567899999999999999988899999999999999999999999             689999999999999987   


Q ss_pred             ----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                          | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       436 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~  471 (550)
T 3rix_A          436 DRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAG  471 (550)
T ss_dssp             ------------------------------------
T ss_pred             ecchheeEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence                3 999999999999999999999999999985

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=4.3e-65  Score=498.77  Aligned_cols=391  Identities=29%  Similarity=0.422  Sum_probs=327.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus        50 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi  129 (548)
T 2d1s_A           50 GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF  129 (548)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred             CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcC----C-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCC------CCCCEEEEecC
Q 014435          102 TVPELWDKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV------KQTDAAALLYS  170 (424)
Q Consensus       102 ~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~T  170 (424)
                      ++++....+...    . ...++.. +...       .......++++...... ...+....      .++++++++||
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~T  200 (548)
T 2d1s_A          130 SSKKGLDKVITVQKTVTTIKTIVIL-DSKV-------DYRGYQCLDTFIKRNTP-PGFQASSFKTVEVDRKEQVALIMNS  200 (548)
T ss_dssp             ECTTTHHHHHHHHHHSTTCCEEEET-TCSS-------CBTTBCBHHHHHHHTSC-TTCCGGGCCCCCCCTTTCEEEEECC
T ss_pred             EcHHHHHHHHHHhcCCCCCCEEEEe-CCcc-------cccccccHHHHHhcCcc-ccCCcccccccccCCCCCEEEEEeC
Confidence            998876655432    1 1222221 1100       00122345555443321 10111112      23899999999


Q ss_pred             CCCCCCcchhhhcHHHHHHHHHHHHhhhh-hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHH
Q 014435          171 SGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI  249 (424)
Q Consensus       171 SGtTG~pK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  249 (424)
                      |||||.||+|.++|+++............ .....++++++.+|++|.+|+...++.++ .|+++++.+.+++..+++.+
T Consensus       201 SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i  279 (548)
T 2d1s_A          201 SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTL  279 (548)
T ss_dssp             SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHH
T ss_pred             CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHH
Confidence            99999999999999999887665543311 12234589999999999999975567777 99999999889999999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|+++++|+++..|.+.......+++++|.+++||+++++++.+++.+.++++++++.||+||+++.++.....  
T Consensus       280 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--  357 (548)
T 2d1s_A          280 QDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--  357 (548)
T ss_dssp             HHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--
T ss_pred             HHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc--
Confidence            999999999999999999987766666789999999999999999999999999889999999999998776664332  


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce---
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN---  393 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~---  393 (424)
                      ....+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+|++++||.+   
T Consensus       358 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~  437 (548)
T 2d1s_A          358 DDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIV  437 (548)
T ss_dssp             CCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred             cCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEe
Confidence            4567899999999999999988899999999999999999999999             579999999999999987   


Q ss_pred             ----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                          | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       438 GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~  473 (548)
T 2d1s_A          438 DRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG  473 (548)
T ss_dssp             EEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEE
T ss_pred             ccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence                3 899999999999999999999999999985

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=5.9e-66  Score=500.01  Aligned_cols=382  Identities=27%  Similarity=0.364  Sum_probs=322.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus        26 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi  105 (503)
T 4fuq_A           26 GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV  105 (503)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred             CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC---CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcc
Q 014435          102 TVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK  178 (424)
Q Consensus       102 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  178 (424)
                      ++++....+....   ...+......            ....+.+......  ...+.....++|+++++|||||||.||
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PK  171 (503)
T 4fuq_A          106 CDPSKRDGIAAIAAKVGATVETLGPD------------GRGSLTDAAAGAS--EAFATIDRGADDLAAILYTSGTTGRSK  171 (503)
T ss_dssp             ECGGGTTTTHHHHHHHTCEEEECCTT------------SCSHHHHHHHTSC--SCCCCCCCCTTSEEEEEECC--CCSCC
T ss_pred             ECchhhHHHHHHHhhcCceEEEecCC------------cccccchhhhcCC--CCcCcCCCCCCCeEEEEECCCcccCCe
Confidence            9987554332221   0111111110            0011111111111  222334556899999999999999999


Q ss_pred             hhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEE
Q 014435          179 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW  258 (424)
Q Consensus       179 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~  258 (424)
                      +|.++|+++..............  .++++++.+|++|.+|+....+.++..|+++++.+.+++..+++.++  ++|+++
T Consensus       172 gV~~sh~~l~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~  247 (503)
T 4fuq_A          172 GAMLSHDNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLM  247 (503)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCC--TTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEE
T ss_pred             EEEEeHHHHHHHHHHHHHHhCCC--CCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEE
Confidence            99999999998877776665554  34999999999999998656778899999999999999999999998  899999


Q ss_pred             echHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCcccc
Q 014435          259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGT  338 (424)
Q Consensus       259 ~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~  338 (424)
                      ++|+++..+++........++++|.+++||+++++++.++|.+.+ +.++++.||+||++..++...  ......+++|+
T Consensus       248 ~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~  324 (503)
T 4fuq_A          248 GVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPY--DGDRVPGAVGP  324 (503)
T ss_dssp             ECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCS--SSCCCTTEEEE
T ss_pred             EHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccCC--CCCCcCCcccc
Confidence            999999999998777777789999999999999999999999988 689999999999886654322  23566789999


Q ss_pred             ccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce-------e-eEe
Q 014435          339 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN-------D-FFC  397 (424)
Q Consensus       339 ~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~-------d-i~~  397 (424)
                      |+++++++|+|++++++++.|+.|||+++|+.++.||             ++||+|||+|++++||.+       | |++
T Consensus       325 p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~  404 (503)
T 4fuq_A          325 ALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT  404 (503)
T ss_dssp             BCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE
T ss_pred             CCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE
Confidence            9999999999988999999999999999999999999             689999999999999987       3 999


Q ss_pred             eeeeeChhhHHHHHhcCCCcccceecC
Q 014435          398 KLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       398 ~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++|+|.|||++|.+||+|.+|+|+|
T Consensus       405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~  431 (503)
T 4fuq_A          405 GGFNVYPKEIESEIDAMPGVVESAVIG  431 (503)
T ss_dssp             TTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEE
Confidence            999999999999999999999999974

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.1e-64  Score=494.56  Aligned_cols=384  Identities=28%  Similarity=0.452  Sum_probs=319.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|
T Consensus        50 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i  129 (549)
T 3g7s_A           50 PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLV  129 (549)
T ss_dssp             CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred             cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEE
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCC-CCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVK-QTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~TSGtTG~  176 (424)
                      ++++....+....    ...++...             .....+.++......  ..+..... ++|+++|+|||||||.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~  194 (549)
T 3g7s_A          130 VHSMLYENFKPVLEKTGVERVFVVG-------------GEVNSLSEVMDSGSE--DFENVKVNPEEDVALIPYTGGTTGM  194 (549)
T ss_dssp             EEGGGHHHHHHHHTTSCCCEEEEET-------------CSSSCHHHHHHHSCS--CCCCCCCCTTTSEEECCEECCCCC-
T ss_pred             EChHHHHHHHHHHhhCCCcEEEEeC-------------CCCcCHHHHHhcCcc--ccccccCCCCCCEEEEEECCCccCC
Confidence            9988766554432    22222221             122345555544332  22222333 3899999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|+++...+..........  ..++++..+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+
T Consensus       195 PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  271 (549)
T 3g7s_A          195 PKGVMLTHFNLAANALQLAVATGLS--HMDTIVGCMPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTF  271 (549)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHHCCC--TTCEEECCSCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCE
T ss_pred             CceEEEcHHHHHHHHHHHHHHcCCC--CCCEEEEeCcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeE
Confidence            9999999999999887766655543  349999999999999996 4788899999999999999999999999999999


Q ss_pred             EEechHHHHHHHhcccccc--CCCCCeeEEEecCCCCCHHHHHHHHHh----CC--CCeEEecccCccCCCceeecCCCC
Q 014435          257 WWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKN----IP--GATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~~g~~~~~~~~~~~~~~----~~--~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      ++++|+++..|.+......  .+++++|.+++||+++++++.+++.+.    ++  ++++++.||+||++++++......
T Consensus       272 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  351 (549)
T 3g7s_A          272 SWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR  351 (549)
T ss_dssp             EEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG
T ss_pred             EEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc
Confidence            9999999999988765443  578999999999999999999999987    53  389999999999988777654432


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh---------------hh--ccccCceEEEecCC
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF---------------EL--TVNCNLFSYFRSND  391 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy---------------~~--~~~TgD~g~~~~~g  391 (424)
                       ....+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||               ++  ||+|||+|++++||
T Consensus       352 -~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG  430 (549)
T 3g7s_A          352 -LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEG  430 (549)
T ss_dssp             -GGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTS
T ss_pred             -cCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCc
Confidence             3567899999999999999988999999999999999999999999               23  99999999999999


Q ss_pred             ce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          392 HN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       392 ~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      .+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       431 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~  471 (549)
T 3g7s_A          431 FLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIG  471 (549)
T ss_dssp             CEEEEEEC------------CHHHHHHHTTSTTEEEEEEEC
T ss_pred             eEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence            87       3 999999999999999999999999999985

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=4.7e-64  Score=493.77  Aligned_cols=387  Identities=22%  Similarity=0.293  Sum_probs=322.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus        84 ~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii  163 (580)
T 3etc_A           84 EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIV  163 (580)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEE
T ss_pred             EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecccch--HHHhcC----C-C-CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCC--CCCCCCCEEEEecCC
Q 014435          102 TVPELW--DKVKDL----N-L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD--VSVKQTDAAALLYSS  171 (424)
Q Consensus       102 ~~~~~~--~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~TS  171 (424)
                      ++.+..  ..+...    . . ..++....         .....+..+.+.+.........+.  ....++|+++++|||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  234 (580)
T 3etc_A          164 CIAEDDVPEQVDEAHAECGDIPLKKAKVGG---------DVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSS  234 (580)
T ss_dssp             EESSTTHHHHHHHHHHHHCSCCCEEEEESS---------SCCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEEC
T ss_pred             EecchhHHHHHHHHhhhCCCcceEEEEeCC---------ccccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeC
Confidence            987654  333221    1 1 12222211         112344556666554332111111  345789999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEec--CCCCHHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM--GKFDIEMALRAI  249 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~i  249 (424)
                      ||||.||+|.++|.++.............  ..++++++..|+.|..+.+..++.++..|+++++.  ..+++..+++.+
T Consensus       235 GTTG~PKgV~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i  312 (580)
T 3etc_A          235 GTAGFPKMVEHDNTYPLGHILTAKYWQNV--EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKA  312 (580)
T ss_dssp             CSSSSCEEEEEETTHHHHHHHHHHTTSCC--CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHH
T ss_pred             CCCCCccEEEeccHHHHHHHHHHHHhhCC--CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence            99999999999999887765543333333  34489999999999888876688899999999987  568999999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|+++++|++++.|.+.. ....++++||.+++||+++++++.++|.+.+ ++++++.||+||++..++.....  
T Consensus       313 ~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--  388 (580)
T 3etc_A          313 SKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWM--  388 (580)
T ss_dssp             HHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTTS--
T ss_pred             HHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCCC--
Confidence            9999999999999999998863 3455789999999999999999999999988 69999999999998766654433  


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEec-----CCcchhh------------hhccccCceEEEecCCc
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG-----PNVTPVF------------ELTVNCNLFSYFRSNDH  392 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~gy------------~~~~~TgD~g~~~~~g~  392 (424)
                      ..+.+++|+|+++++++|+| +++++++.|+.|||+++|     +.++.||            ++||+|||+|++++||.
T Consensus       389 ~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~  467 (580)
T 3etc_A          389 EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGY  467 (580)
T ss_dssp             CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred             CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCc
Confidence            56778999999999999999 689999999999999997     7788999            78999999999999998


Q ss_pred             e-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          393 N-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       393 ~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       468 l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg  507 (580)
T 3etc_A          468 LWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITG  507 (580)
T ss_dssp             EEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             EEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence            7       3 999999999999999999999999999985

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.8e-64  Score=489.90  Aligned_cols=384  Identities=23%  Similarity=0.333  Sum_probs=322.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        42 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  121 (517)
T 3r44_A           42 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIY  121 (517)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhh
Q 014435          103 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL  182 (424)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  182 (424)
                      +.+....+..+......      ..   ..........+.+.+....  ...+.....++|+++|+|||||||.||+|++
T Consensus       122 ~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~  190 (517)
T 3r44_A          122 GAPSAPVIDAIRAQADP------PG---TVTDWIGADSLAERLRSAA--ADEPAVECGGDDNLFIMYTSGTTGHPKGVVH  190 (517)
T ss_dssp             CGGGHHHHHHHHHSSSC------CT---TCCEEEEHHHHHHHHHHCC--CCCCCCCCCTTSEEEEEEECC---CCEEEEE
T ss_pred             CCchHHHHHHHHhccCC------cc---EEEEccCcccHHHHhhccC--cCCCCCCCCCCCeEEEEECCcccccCceeee
Confidence            98776655433110000      00   0000000122333333222  2233445678999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEEEechH
Q 014435          183 THKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP  262 (424)
Q Consensus       183 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~  262 (424)
                      +|+++..............  .++++++.+|++|.+++...++..+ .|+++++.+.+++..+++.++++++|++.++|+
T Consensus       191 sh~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~  267 (517)
T 3r44_A          191 THESVHSAASSWASTIDVR--YRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPA  267 (517)
T ss_dssp             EHHHHHHHHHHHHHHSCCC--TTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHH
T ss_pred             eHHHHHHHHHHHHHhcCCC--CCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHH
Confidence            9999998877766555443  4499999999999999964455545 899999999999999999999999999999999


Q ss_pred             HHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCccccccCC
Q 014435          263 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG  342 (424)
Q Consensus       263 ~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~  342 (424)
                      ++..|.+.......+++++|.+++||+++++++.+++.+.  ++++++.||+||+++.++...........+++|+|.++
T Consensus       268 ~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~  345 (517)
T 3r44_A          268 ILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF  345 (517)
T ss_dssp             HHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred             HHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence            9999998877667788999999999999999999999987  79999999999998877665544435667899999999


Q ss_pred             cEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce-------e-eEeeeeee
Q 014435          343 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN-------D-FFCKLFQV  402 (424)
Q Consensus       343 ~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~-------d-i~~~G~~v  402 (424)
                      ++++|+| +++++++.| .|||+++|+.++.||            ++||+|||+|++++||.+       | |+++|++|
T Consensus       346 ~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v  423 (517)
T 3r44_A          346 TDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV  423 (517)
T ss_dssp             EEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEE
T ss_pred             eEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEE
Confidence            9999999 689999999 899999999999999            689999999999999987       3 99999999


Q ss_pred             ChhhHHHHHhcCCCcccceecC
Q 014435          403 APAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       403 ~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|.|||++|.+||+|.+|+|+|
T Consensus       424 ~p~eIE~~l~~~p~V~~~~Vv~  445 (517)
T 3r44_A          424 YPAEIESVIIGVPGVSEVAVIG  445 (517)
T ss_dssp             CHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CHHHHHHHHHhCCCEeEEEEEe
Confidence            9999999999999999999985

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=9.5e-64  Score=488.60  Aligned_cols=390  Identities=24%  Similarity=0.277  Sum_probs=321.7

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. ..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus        39 p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l  118 (539)
T 1mdb_A           39 GDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFC  118 (539)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHH
T ss_pred             CCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHH
Confidence            4444444 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchH--------HHh-cCC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCC
Q 014435           93 KDSNPKLVITVPELWD--------KVK-DLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQT  162 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~--------~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (424)
                      +.++++++|++++...        .+. ... .+.++.....           .   .+.++.....  ...+.....++
T Consensus       119 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~--~~~~~~~~~~~  182 (539)
T 1mdb_A          119 EFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-----------E---EFLPLEDLHT--EPVKLPEVKSS  182 (539)
T ss_dssp             HHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-----------T---TSEEGGGCCC--CCCCCCCCCTT
T ss_pred             HhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-----------c---chhhhhhccc--cccccCCCCcC
Confidence            9999999999876421        111 111 1222221110           0   1122221111  11122345679


Q ss_pred             CEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHH-HHHHHhhcCceEEecCCCC
Q 014435          163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKFD  241 (424)
Q Consensus       163 ~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~  241 (424)
                      |+++++|||||||.||+|.++|+++.............  ..++++++.+|++|.+++.. .++.++..|+++++.+.++
T Consensus       183 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~  260 (539)
T 1mdb_A          183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWL--DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPS  260 (539)
T ss_dssp             SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC--CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSS
T ss_pred             ceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCC--CCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCC
Confidence            99999999999999999999999998887766555444  34499999999999999865 5889999999999999999


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCce
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI  321 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~  321 (424)
                      +..+++.++++++|++.++|+++..+++.......++++||.+++||+++++++.+++.+.+ ++++++.||+||++. .
T Consensus       261 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~-~  338 (539)
T 1mdb_A          261 PDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLV-N  338 (539)
T ss_dssp             HHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCE-E
T ss_pred             HHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcc-c
Confidence            99999999999999999999999999987666666789999999999999999999999988 699999999999643 3


Q ss_pred             eecCCCCCccCCCccccccCC-cEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEE
Q 014435          322 SLENPLVGVRRSGSAGTLVAG-VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYF  387 (424)
Q Consensus       322 ~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~  387 (424)
                      ............+++|+|+++ .+++|+| +++++++.|+.|||+++|+.++.||             ++||+|||+|++
T Consensus       339 ~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~  417 (539)
T 1mdb_A          339 YTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRL  417 (539)
T ss_dssp             ECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEE
T ss_pred             ccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEE
Confidence            322222112345689999976 4899999 6899999999999999999999999             679999999999


Q ss_pred             ecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++||.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       418 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~  462 (539)
T 1mdb_A          418 TRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS  462 (539)
T ss_dssp             CTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            999987       3 999999999999999999999999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=5.8e-63  Score=492.50  Aligned_cols=394  Identities=23%  Similarity=0.283  Sum_probs=322.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       106 ~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~  185 (652)
T 1pg4_A          106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVIT  185 (652)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEE
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchH---------HHh----cC---CCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435          103 VPELWD---------KVK----DL---NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus       103 ~~~~~~---------~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      +++...         .+.    ..   ....++..........   ........+++++....  ...+.....++|+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~  260 (652)
T 1pg4_A          186 ADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID---WQEGRDLWWRDLIEKAS--PEHQPEAMNAEDPLF  260 (652)
T ss_dssp             ESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---CCBTTEEEHHHHHTTSC--SCCCCCCEETTSEEE
T ss_pred             cCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---ccCCCceeHHHHHhhcC--CCCCccccCCCCCEE
Confidence            876432         111    11   1122222211100000   00112234566554322  222334456899999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHHHH-HHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CC
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAASLM-ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FD  241 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~  241 (424)
                      |+|||||||.||+|+++|+++...... .......  ..++++++.+|++|..|+...++.+|..|+++++.+.    ++
T Consensus       261 ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~  338 (652)
T 1pg4_A          261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY--HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT  338 (652)
T ss_dssp             EEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC--CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS
T ss_pred             EEeccCCCCCCceEEECchHHHHHHHHHHHHhcCC--CCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC
Confidence            999999999999999999998765432 2223333  3449999999999999986678899999999999864    58


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhccc--cccCCCCCeeEEEecCCCCCHHHHHHHHHhCC--CCeEEecccCccC
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GATIFQGYGMTET  317 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~yG~tE~  317 (424)
                      +..+++.++++++|+++++|++++.|.+...  ....++++||.+++||+++++++++++.+.++  ++++++.||+||+
T Consensus       339 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~  418 (652)
T 1pg4_A          339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET  418 (652)
T ss_dssp             TTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred             HHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence            9999999999999999999999999998754  23457899999999999999999999999884  2899999999999


Q ss_pred             CCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEec--CCcchhh---------------hhccc
Q 014435          318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG--PNVTPVF---------------ELTVN  380 (424)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy---------------~~~~~  380 (424)
                      ++.++...+.....+.+++|+|++|++++|+| +++++++.|+.|||+++|  |.++.||               ++||+
T Consensus       419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~  497 (652)
T 1pg4_A          419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF  497 (652)
T ss_dssp             SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEE
T ss_pred             ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEE
Confidence            87666554433345678999999999999999 689999999999999999  6788887               46899


Q ss_pred             cCceEEEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          381 CNLFSYFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       381 TgD~g~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |||+|++++||.+      |  |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       498 TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg  549 (652)
T 1pg4_A          498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG  549 (652)
T ss_dssp             EEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEE
T ss_pred             CCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence            9999999999987      3  999999999999999999999999999985

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=8.3e-64  Score=489.55  Aligned_cols=394  Identities=22%  Similarity=0.274  Sum_probs=295.2

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        44 p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l  123 (544)
T 3o83_A           44 PHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFI  123 (544)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHH
T ss_pred             CCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHH
Confidence            3444443 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccch--------HHHhcCC--CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCC
Q 014435           93 KDSNPKLVITVPELW--------DKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQT  162 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (424)
                      +.++++++|++++..        ..+....  ...+......           .....+.++...... ...+.....++
T Consensus       124 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~~  191 (544)
T 3o83_A          124 KQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-----------ATDFGLLDWIETPAE-TFVDFSSTPAD  191 (544)
T ss_dssp             HHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-----------TTSEEHHHHHHSCCS-SCCCCCCCCTT
T ss_pred             HhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-----------ccccchhhhhhcccc-cccccccCCcc
Confidence            999999999987653        1122111  1222222111           011122333322221 11222345689


Q ss_pred             CEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHH-HHHHHhhcCceEEecCCCC
Q 014435          163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKFD  241 (424)
Q Consensus       163 ~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~  241 (424)
                      ++++++|||||||.||+|+++|+++...+..........  .++++++.+|++|.+++.. .++.++..|+++++.+.++
T Consensus       192 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~  269 (544)
T 3o83_A          192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN--SNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPE  269 (544)
T ss_dssp             SEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCC--TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCC
T ss_pred             ceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCC--CCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCC
Confidence            999999999999999999999999998887776665543  4499999999999999864 4788999999999999999


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCce
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI  321 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~  321 (424)
                      +..+++.++++++|++.++|+++..+++.......++++||.+++||+++++++.+++.+.+ ++++++.||+||++..+
T Consensus       270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~  348 (544)
T 3o83_A          270 PLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNY  348 (544)
T ss_dssp             HHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEE
T ss_pred             HHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeecccccccee
Confidence            99999999999999999999999999987766666789999999999999999999999988 79999999999987443


Q ss_pred             eecCCCCCccCCCcccccc-CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEE
Q 014435          322 SLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYF  387 (424)
Q Consensus       322 ~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~  387 (424)
                      ... .........++|+|+ ++++++|+| +++++++.|+.|||+++|+.++.||             ++||+|||+|++
T Consensus       349 ~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~  426 (544)
T 3o83_A          349 TRL-DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQR  426 (544)
T ss_dssp             CCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEE
T ss_pred             ecC-CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEE
Confidence            332 222233456899996 899999999 7999999999999999999999999             679999999999


Q ss_pred             ecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++||.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       427 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~  471 (544)
T 3o83_A          427 TPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA  471 (544)
T ss_dssp             CTTSCEEEEEEEC--------------------------------
T ss_pred             cCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEe
Confidence            999987       3 999999999999999999999999999985

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.1e-63  Score=486.33  Aligned_cols=385  Identities=22%  Similarity=0.328  Sum_probs=308.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus        45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi  124 (541)
T 1v25_A           45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLL  124 (541)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred             CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++++....+....     ...++......         ......+++++....  .   .....++++++|+|||||||.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~---~~~~~~~~~a~i~~TSGTTG~  190 (541)
T 1v25_A          125 FDPNLLPLVEAIRGELKTVQHFVVMDEKA---------PEGYLAYEEALGEEA--D---PVRVPERAACGMAYTTGTTGL  190 (541)
T ss_dssp             ECGGGHHHHHHHGGGCSSCCEEEESSSCC---------CTTCEEHHHHCCSCC--C---CCCCCTTSEEEEEEECSSSSS
T ss_pred             EChhHHHHHHHHHhhCCCccEEEEecCCC---------CcccccHHHHhhccC--C---cccCCCCCcEEEEECCCCCCC
Confidence            9988766554321     11222211100         012234454443222  1   134457899999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC-CCHHHHHHHHHHccce
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVT  255 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t  255 (424)
                      ||+|.++|+++.................++++++.+|++|.+++. ..+.++..|+++++.+. +++..+++.++++++|
T Consensus       191 PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t  269 (541)
T 1v25_A          191 PKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVT  269 (541)
T ss_dssp             CEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCC
T ss_pred             CcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCee
Confidence            999999999988765442211222234459999999999999984 56788999999999864 7999999999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC------
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG------  329 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~------  329 (424)
                      +++++|+++..|.+.......+++++|.+++||+++++++.+++ +.+ ++++++.||+||++++++.......      
T Consensus       270 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  347 (541)
T 1v25_A          270 FTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSE  347 (541)
T ss_dssp             EEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred             EEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCc
Confidence            99999999999988766555678999999999999999999999 556 7999999999999877665433210      


Q ss_pred             ---ccCCCccccccCCcEEEEeeCCCCccCCC--CCceeEEEecCCcchhh-------------hhccccCceEEEecCC
Q 014435          330 ---VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSND  391 (424)
Q Consensus       330 ---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g  391 (424)
                         ....+++|+|+++++++|+| +++++++.  ++.|||+++|+.++.||             ++||+|||+|+++++|
T Consensus       348 ~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG  426 (541)
T 1v25_A          348 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEG  426 (541)
T ss_dssp             HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTC
T ss_pred             cccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCc
Confidence               12357899999999999999 68888884  36899999999999999             6799999999999999


Q ss_pred             ce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          392 HN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       392 ~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      .+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       427 ~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~  467 (541)
T 1v25_A          427 YVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA  467 (541)
T ss_dssp             CEEEEEESSCEEEETTEEEEHHHHHCC----------CEEE
T ss_pred             eEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEE
Confidence            87       3 999999999999999999999999999984

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=8.2e-63  Score=484.29  Aligned_cols=382  Identities=19%  Similarity=0.259  Sum_probs=319.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      +++||+||.++++++|++|++. |+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus        72 ~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi  151 (570)
T 3c5e_A           72 LMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIV  151 (570)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred             eEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEE
Confidence            5799999999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHHhcCC-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++++....+....     .+.++.....         .......+++++....  ...+.....++|+++|+|||||||.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~  220 (570)
T 3c5e_A          152 AGDEVIQEVDTVASECPSLRIKLLVSEK---------SCDGWLNFKKLLNEAS--TTHHCVETGSQEASAIYFTSGTSGL  220 (570)
T ss_dssp             EETTTHHHHHHHGGGCTTCCEEEEESSS---------CCTTSEEHHHHHHHSC--SCCCCCCCBTTSEEEEEECCCSSSS
T ss_pred             echHHHHHHHHHhhcCCceeEEEEeccc---------CccccccHHHHhhccc--ccccccCCCCCCcEEEEECCCCCCC
Confidence            9988766554321     1122222110         0112334555554332  2222234568999999999999999


Q ss_pred             cchhhhcHHHHHH--HHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHHHc
Q 014435          177 SKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKY  252 (424)
Q Consensus       177 pK~v~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~  252 (424)
                      ||+|.++|+ ++.  ..... ..  .....++++++.+|++|.+++...++.++..|+++++.+  .+++..+++.++++
T Consensus       221 PKgV~~sh~-~~~~~~~~~~-~~--~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~  296 (570)
T 3c5e_A          221 PKMAEHSYS-SLGLKAKMDA-GW--TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSY  296 (570)
T ss_dssp             CCEEEEEHH-HHHHHHHHHT-TT--TSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHS
T ss_pred             CCEEEechH-HHHhhhhhhh-hh--cCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHh
Confidence            999999999 444  22222 22  222345899999999999998767888899999999886  68999999999999


Q ss_pred             cceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccC
Q 014435          253 RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR  332 (424)
Q Consensus       253 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~  332 (424)
                      ++|+++++|+++..|.+.. ....+++++|.+++||+++++++.++|.+.+ ++++++.||+||++..++.....  ...
T Consensus       297 ~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~  372 (570)
T 3c5e_A          297 PIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKTM--KIK  372 (570)
T ss_dssp             CCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS--CCC
T ss_pred             CCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCccc--ccC
Confidence            9999999999999998763 3344688999999999999999999999988 69999999999998655543322  456


Q ss_pred             CCccccccCCcEEEEeeCCCCccCCCCCceeEEEe-----cCCcchhh------------hhccccCceEEEecCCce--
Q 014435          333 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR-----GPNVTPVF------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       333 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~-----~~~~~~gy------------~~~~~TgD~g~~~~~g~~--  393 (424)
                      .+++|+|+++++++|+| +++++++.|+.|||+++     |+.++.||            ++||+|||+|++++||.+  
T Consensus       373 ~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~  451 (570)
T 3c5e_A          373 PGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQF  451 (570)
T ss_dssp             TTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEE
T ss_pred             CCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEE
Confidence            78999999999999999 68999999999999999     99999999            589999999999999987  


Q ss_pred             -----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       452 ~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~  488 (570)
T 3c5e_A          452 MGRADDIINSSGYRIGPSEVENALMEHPAVVETAVIS  488 (570)
T ss_dssp             EEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred             EecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence                 3 999999999999999999999999999985

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=9e-63  Score=478.27  Aligned_cols=376  Identities=21%  Similarity=0.272  Sum_probs=312.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++
T Consensus        27 ~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i  106 (504)
T 1t5h_X           27 GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV  106 (504)
T ss_dssp             TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred             CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             E--cccchHHH-hcCCCCeEEEecCCCccccccccCCCcccchhhhhhccC---CCCCCCCCCCCCCCEEEEecCCCCCC
Q 014435          102 T--VPELWDKV-KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---SVTDIPDVSVKQTDAAALLYSSGTTG  175 (424)
Q Consensus       102 ~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG  175 (424)
                      +  +++....+ ..... ..+                   ..++++.....   .....+.....++++++++|||||||
T Consensus       107 ~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG  166 (504)
T 1t5h_X          107 IAVGRQVADAIFQSGSG-ARI-------------------IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTG  166 (504)
T ss_dssp             ECC--CHHHHHHHHCCC-CEE-------------------EEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---
T ss_pred             Eecchhhhhhhhhcccc-cee-------------------EEecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCC
Confidence            9  76655444 32211 111                   12222222110   00111123456799999999999999


Q ss_pred             CcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccce
Q 014435          176 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  255 (424)
Q Consensus       176 ~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t  255 (424)
                      .||+|.++|+++.................++++++.+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|
T Consensus       167 ~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t  246 (504)
T 1t5h_X          167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT  246 (504)
T ss_dssp             CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCe
Confidence            99999999999988877665554442245599999999999999865688999999999999999999999999999999


Q ss_pred             EEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCC
Q 014435          256 VWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS  333 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~  333 (424)
                      +++++|+++..|.+....  ...++++||.+++||+++++++.+++++.+ +.++++.||+||++ .+....    ....
T Consensus       247 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~-~~~~~~----~~~~  320 (504)
T 1t5h_X          247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAM-NSLYMR----QPKT  320 (504)
T ss_dssp             EEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTE-EEEEEE----SCSS
T ss_pred             EEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccc-cccccc----CCCC
Confidence            999999999999876522  345689999999999999999999999999 58999999999983 232221    2456


Q ss_pred             CccccccCCcEEEEeeCCCC---ccCCCCCceeEEEe-cCCcchhh------------hhccccCceEEEecCCce----
Q 014435          334 GSAGTLVAGVEAQIVSVDTL---KPLPPNQLGEIWVR-GPNVTPVF------------ELTVNCNLFSYFRSNDHN----  393 (424)
Q Consensus       334 ~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gel~v~-~~~~~~gy------------~~~~~TgD~g~~~~~g~~----  393 (424)
                      +++|.|.++++++|+| +++   ++++.|+.|||+++ |+.++.||            ++||+|||+|++++||.+    
T Consensus       321 ~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~G  399 (504)
T 1t5h_X          321 GTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG  399 (504)
T ss_dssp             SSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred             CccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeC
Confidence            7899999999999999 455   89999999999999 99999999            579999999999999987    


Q ss_pred             ---e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ---D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ---d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                         | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       400 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~  434 (504)
T 1t5h_X          400 RVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIG  434 (504)
T ss_dssp             EGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             cccCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence               3 999999999999999999999999999985

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=8.9e-63  Score=481.36  Aligned_cols=396  Identities=21%  Similarity=0.320  Sum_probs=313.8

Q ss_pred             cCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLVL-PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      +++.++.. .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        37 p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l  116 (529)
T 2v7b_A           37 AGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYML  116 (529)
T ss_dssp             TTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHH
T ss_pred             CCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHH
Confidence            44444432 45799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCC-----C-CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435           93 KDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      ++++++++|++++....+....     . ..++......       ........++++.....  ...+.....++|+++
T Consensus       117 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~  187 (529)
T 2v7b_A          117 THSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE-------SEPRLAPLFEELIDAAA--PAAKAAATGCDDIAF  187 (529)
T ss_dssp             HHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-------------CCCBHHHHHHTSC--CCSSCCCCCTTSEEE
T ss_pred             hccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc-------cccccccchhhhhccCC--CcccccCCCCCCeEE
Confidence            9999999999987765543321     1 2222211100       00001123455443222  122233456899999


Q ss_pred             EecCCCCCCCcchhhhcHHHH-HHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEec-CCCCHHH
Q 014435          167 LLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEM  244 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~  244 (424)
                      ++|||||||.||+|.++|+++ ............  ...++++++.+|++|.+|+...++.++..|+++++. +.+++..
T Consensus       188 i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~  265 (529)
T 2v7b_A          188 WLYSSGSTGKPKGTVHTHANLYWTAELYAKPILG--IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADA  265 (529)
T ss_dssp             EEEC-----CCCEEEEEHHHHHHHHHHTCCCCCC--CCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHH
T ss_pred             EEECCCCCCCCceEEEEhhHHHHHHHHHhhhccC--CCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHH
Confidence            999999999999999999998 444332222222  234599999999999999976678899999999987 5689999


Q ss_pred             HHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeec
Q 014435          245 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE  324 (424)
Q Consensus       245 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~  324 (424)
                      +++.++++++|+++++|+++..+++..........++|.+++||+++++++.+++.+.+ ++++++.||+||++++.+..
T Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~  344 (529)
T 2v7b_A          266 IFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSN  344 (529)
T ss_dssp             HHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEEC
T ss_pred             HHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeecc
Confidence            99999999999999999999999876543332124899999999999999999999988 79999999999997766554


Q ss_pred             CCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCc
Q 014435          325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDH  392 (424)
Q Consensus       325 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~  392 (424)
                      ...  ....+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||            ++||+|||+|+++++|.
T Consensus       345 ~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~  421 (529)
T 2v7b_A          345 RAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGC  421 (529)
T ss_dssp             CTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred             ccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCcc
Confidence            433  35678999999999999999 7899999999999999999999999            57999999999999998


Q ss_pred             e-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          393 N-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       393 ~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       422 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~  461 (529)
T 2v7b_A          422 YVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVG  461 (529)
T ss_dssp             EEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEE
T ss_pred             EEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence            7       3 999999999999999999999999999985

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=4e-63  Score=481.90  Aligned_cols=386  Identities=18%  Similarity=0.223  Sum_probs=319.8

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++.+++. ..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        15 p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il   94 (512)
T 3fce_A           15 PDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIA   94 (512)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHH
T ss_pred             CCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHH
Confidence            3344443 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +.+++++++++.......    .......                ...+.+...........+.....++|+++++||||
T Consensus        95 ~~~~~~~~i~~~~~~~~~----~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSG  154 (512)
T 3fce_A           95 ENSGAKLLLSATAVTVTD----LPVRIVS----------------EDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSG  154 (512)
T ss_dssp             HHSCCCEEEESSCCCSSC----CSSEEEE----------------THHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC
T ss_pred             HhcCCCEEEecCcccccc----cccceec----------------hhhhhhhcccccccCCCccccCCCCCeEEEEECCC
Confidence            999999999975432110    0011100                01122222211211222334567899999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i  249 (424)
                      |||.||+|+++|+++..............  .++++++.+|++|..++. .++.++..|+++++.+.   +++..+++.+
T Consensus       155 TTG~PKgv~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i  231 (512)
T 3fce_A          155 STGNPKGVQITYNCLVSFTKWAVEDFNLQ--TGQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWAIDKDMIARPKDLFASL  231 (512)
T ss_dssp             ----CEEEEEEHHHHHHHHHHHHHHTTCC--SSCEEEECSCTTSGGGHH-HHHHHHHTTCEEEECCHHHHHSHHHHHHHH
T ss_pred             CCCCCceEEEehHHHHHHHHHHHHhcCCC--CCCEEEEeCCccHhHHHH-HHHHHHhCCCEEEECCHHHhhCHHHHHHHH
Confidence            99999999999999998877766655543  449999999999999985 68899999999999876   6899999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.++++++++.||+||+++.++.......
T Consensus       232 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~  311 (512)
T 3fce_A          232 EQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE  311 (512)
T ss_dssp             HHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHH
T ss_pred             HHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccc
Confidence            99999999999999999988877677778999999999999999999999999988999999999999876665332211


Q ss_pred             ---ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----------------hhccccCceEEEecC
Q 014435          330 ---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----------------ELTVNCNLFSYFRSN  390 (424)
Q Consensus       330 ---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----------------~~~~~TgD~g~~~~~  390 (424)
                         .....++|+|.++++++|+| +++++++.|+.|||+++|+.++.||                ++||+|||+|++ +|
T Consensus       312 ~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~d  389 (512)
T 3fce_A          312 VLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-EN  389 (512)
T ss_dssp             HHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ET
T ss_pred             cccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cC
Confidence               23567899999999999999 7999999999999999999999999                349999999999 78


Q ss_pred             Cce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          391 DHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       391 g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       390 G~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~  431 (512)
T 3fce_A          390 GLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVP  431 (512)
T ss_dssp             TEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEE
T ss_pred             CEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence            877       3 999999999999999999999999999984

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=3.8e-62  Score=486.75  Aligned_cols=397  Identities=21%  Similarity=0.264  Sum_probs=322.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~-~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .+++||+||.++++++|+.|+ ++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++
T Consensus       111 ~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l  190 (663)
T 1ry2_A          111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVV  190 (663)
T ss_dssp             CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred             eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEE
Confidence            456999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchH---------HHhcC----C-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435          101 ITVPELWD---------KVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus       101 i~~~~~~~---------~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      |+++....         .+...    . .+.+++..........  ........+++++....  ...+.....++|+++
T Consensus       191 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~  266 (663)
T 1ry2_A          191 ITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA--FHAPRDLDWATEKKKYK--TYYPCTPVDSEDPLF  266 (663)
T ss_dssp             EEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC--CCSSSEEEHHHHHTTSC--SCCCCCCEETTSCCE
T ss_pred             EEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc--cCCCccccHHHHHhhcC--CCCCccccCCCCceE
Confidence            99876532         11111    1 1223322211000000  00112234555554322  222334556899999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHHHHH-HhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CC
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FD  241 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~  241 (424)
                      |+|||||||.||+|+++|+++....... ......  ..++++++..|++|..|+...++.+|..|+++++.+.    ++
T Consensus       267 ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~  344 (663)
T 1ry2_A          267 LLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT--HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN  344 (663)
T ss_dssp             EEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC--CSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC
T ss_pred             EEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC--CCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC
Confidence            9999999999999999999987654332 222223  3459999999999999986678899999999998864    58


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhccc--cccCCCCCeeEEEecCCCCCHHHHHHHHHhCC--CCeEEecccCccC
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GATIFQGYGMTET  317 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~yG~tE~  317 (424)
                      +..+++.|+++++|+++++|++++.|.+...  ....++++||.+++||+++++++++++.+.++  ++++++.||+||+
T Consensus       345 ~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~  424 (663)
T 1ry2_A          345 YSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES  424 (663)
T ss_dssp             TTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred             HHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence            8999999999999999999999999987654  23457899999999999999999999999884  3899999999999


Q ss_pred             CCceeecCC-CCCccCCCccccccCCcEEEEeeCCCCccCCC-CCceeEEEec--CCcchhh---------------hhc
Q 014435          318 CAPISLENP-LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP-NQLGEIWVRG--PNVTPVF---------------ELT  378 (424)
Q Consensus       318 ~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~~Gel~v~~--~~~~~gy---------------~~~  378 (424)
                      ++.++...+ .....+.+++|+|++|++++|+|++++++++. |+.|||+++|  |.++.||               ++|
T Consensus       425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~  504 (663)
T 1ry2_A          425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY  504 (663)
T ss_dssp             CSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred             cCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCE
Confidence            876666543 22245678999999999999999558999988 9999999999  4788887               468


Q ss_pred             cccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          379 VNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       379 ~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |+|||+|++++||.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       505 y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg  558 (663)
T 1ry2_A          505 YFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG  558 (663)
T ss_dssp             EEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred             EEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence            999999999999987       3 999999999999999999999999999986

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.8e-62  Score=511.00  Aligned_cols=407  Identities=38%  Similarity=0.570  Sum_probs=309.1

Q ss_pred             cCCCCCCC---CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHH
Q 014435           14 SLRPPLVL---PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK   90 (424)
Q Consensus        14 ~~~~~~~~---~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~   90 (424)
                      ++++++..   .++|||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+
T Consensus        75 pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~  154 (979)
T 3tsy_A           75 ATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAK  154 (979)
T ss_dssp             TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHH
T ss_pred             CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHH
Confidence            44444433   456999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEcccchHHHhcCC--CCeEEEecCCCccccccccCCCcccchhhhhhccCCC-CCCCCCCCCCCCEEEE
Q 014435           91 QVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDVSVKQTDAAAL  167 (424)
Q Consensus        91 ~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  167 (424)
                      ++++++++++|++++....+....  ....++..+....    .........+.++....... ...+.....++|+++|
T Consensus       155 ~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i  230 (979)
T 3tsy_A          155 QAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNES----VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVAL  230 (979)
T ss_dssp             HHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTT----SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEEC
T ss_pred             HHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCccc----ccCCcccccHHHHhhccccccccCCcCCCCccceEEE
Confidence            999999999999987665544321  1112222221100    01112234455444322210 1223345678999999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHHhhh--hhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA  245 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  245 (424)
                      +|||||||.||+|+++|+++...+.......  .+....++++++.+|++|.+++...++.++..|+++++.+.+++..+
T Consensus       231 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~  310 (979)
T 3tsy_A          231 PYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL  310 (979)
T ss_dssp             CBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHH
T ss_pred             EeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHH
Confidence            9999999999999999999988765543221  12233459999999999999997678899999999999999999999


Q ss_pred             HHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecC
Q 014435          246 LRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN  325 (424)
Q Consensus       246 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~  325 (424)
                      ++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+++.+.++++++++.||+||++++++...
T Consensus       311 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~  390 (979)
T 3tsy_A          311 LELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSL  390 (979)
T ss_dssp             HHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECG
T ss_pred             HHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCC
Confidence            99999999999999999999999988777778999999999999999999999999998899999999999987665532


Q ss_pred             ---CCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEec
Q 014435          326 ---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRS  389 (424)
Q Consensus       326 ---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~  389 (424)
                         ........+++|+|+++++++|+|++++++++.|+.|||+|+|+.++.||             ++||+|||+|++++
T Consensus       391 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~  470 (979)
T 3tsy_A          391 GFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD  470 (979)
T ss_dssp             GGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred             CCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC
Confidence               12224567889999999999999988899999999999999999999999             67999999999999


Q ss_pred             CCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          390 NDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       390 ~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ||.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       471 dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~  513 (979)
T 3tsy_A          471 DDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVA  513 (979)
T ss_dssp             TSCEEEEEESCC-------------------------------
T ss_pred             CceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence            9987       3 999999999999999999999999999985

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.3e-62  Score=479.64  Aligned_cols=385  Identities=17%  Similarity=0.216  Sum_probs=315.3

Q ss_pred             CCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHH
Q 014435           15 LRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK   93 (424)
Q Consensus        15 ~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~   93 (424)
                      +.+++. ..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus        19 ~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~   98 (521)
T 3l8c_A           19 DFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIE   98 (521)
T ss_dssp             TSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHH
T ss_pred             CCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHH
Confidence            344443 3456999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhcc-CCCCCCCCCCCCCCCEEEEecCCC
Q 014435           94 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS-GSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        94 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      .++++++|++++....+...                       ....+.++.... ............++|+++++||||
T Consensus        99 ~~~~~~ii~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSG  155 (521)
T 3l8c_A           99 IAKPSLIIAIEEFPLTIEGI-----------------------SLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSG  155 (521)
T ss_dssp             HSCCSEEEESSCCCSCCTTS-----------------------EEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC
T ss_pred             hCCCCEEEecCccccccccC-----------------------cccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCC
Confidence            99999999987653222111                       111122221110 011222334557899999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCC---CHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF---DIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i  249 (424)
                      |||.||+|+++|+++............+....+++++...|++|..++. .++.++..|+++++.+..   ++..+++.+
T Consensus       156 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i  234 (521)
T 3l8c_A          156 TTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLFALPKELVADFKQLFTTI  234 (521)
T ss_dssp             ---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEEECCGGGTTCHHHHHHHH
T ss_pred             CCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCCEEEEcCHHHhhCHHHHHHHH
Confidence            9999999999999998876665544334444558999999999988874 678889999999988764   899999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC-
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV-  328 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-  328 (424)
                      +++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.++++++++.||+||+++.++...... 
T Consensus       235 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~  314 (521)
T 3l8c_A          235 AQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE  314 (521)
T ss_dssp             HHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH
T ss_pred             HHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc
Confidence            9999999999999999998877666677899999999999999999999999998899999999999987666533221 


Q ss_pred             --CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----------------hhccccCceEEEecC
Q 014435          329 --GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----------------ELTVNCNLFSYFRSN  390 (424)
Q Consensus       329 --~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----------------~~~~~TgD~g~~~~~  390 (424)
                        ......++|+|+++++++|+| +++++++.|+.|||+++|+.++.||                ++||+|||+|+++++
T Consensus       315 ~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~d  393 (521)
T 3l8c_A          315 MVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTED  393 (521)
T ss_dssp             HHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSS
T ss_pred             cccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCC
Confidence              123556899999999999999 6899999999999999999999999                248999999999999


Q ss_pred             Cce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          391 DHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       391 g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       394 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~  435 (521)
T 3l8c_A          394 NILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVP  435 (521)
T ss_dssp             SCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEEC
T ss_pred             CeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEE
Confidence            987       3 889999999999999999999999999885

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.5e-62  Score=474.92  Aligned_cols=385  Identities=25%  Similarity=0.321  Sum_probs=286.8

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++.+++. ..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        20 pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l   99 (509)
T 3ivr_A           20 PDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVL   99 (509)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred             CCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHH
Confidence            4444443 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcC----C-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEE
Q 014435           93 KDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL  167 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  167 (424)
                      +.++++++|++++....+...    . ...++....             ....+.++...... ...+.....++|+++|
T Consensus       100 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i  165 (509)
T 3ivr_A          100 GDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-------------GSGPFAPFKDLASD-TPFSAPEFGAADGFVI  165 (509)
T ss_dssp             HHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-------------CCSSCEEGGGTCCC-SCCCCCCCCTTSEEEE
T ss_pred             HhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-------------CCcChhhHhhccCC-CCCCcCCCCccccEEE
Confidence            999999999998876653221    1 111221111             01112222221111 2233445678999999


Q ss_pred             ecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHH
Q 014435          168 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR  247 (424)
Q Consensus       168 ~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  247 (424)
                      +|||||||.||+|.++|+++..............  .++++++.+|++|.+|+...+...+..|++++.. .+++..+++
T Consensus       166 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~  242 (509)
T 3ivr_A          166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLT--EADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAAR  242 (509)
T ss_dssp             EEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCC--TTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHH
T ss_pred             EeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCC--CCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHH
Confidence            9999999999999999999998887776655543  3499999999999999975555556666555554 889999999


Q ss_pred             HHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC
Q 014435          248 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL  327 (424)
Q Consensus       248 ~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~  327 (424)
                      .++++++|++.++|+++..+++..  ...+++++|.++.+|++   +..+++.+.++++++++.||+||++++++.....
T Consensus       243 ~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  317 (509)
T 3ivr_A          243 DIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR  317 (509)
T ss_dssp             HHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG
T ss_pred             HHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc
Confidence            999999999999999999998876  33457899999999987   8889999999889999999999998776654432


Q ss_pred             CCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hhccccCceEEEecCCce--
Q 014435          328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       328 ~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~~~~TgD~g~~~~~g~~--  393 (424)
                         ....++|+|+++++++|+| +++++++.|+.|||+++|+.++.||            ++||+|||+|+++++|.+  
T Consensus       318 ---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~  393 (509)
T 3ivr_A          318 ---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFY  393 (509)
T ss_dssp             ---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEE
T ss_pred             ---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEE
Confidence               2334599999999999999 6799999999999999999999999            789999999999999977  


Q ss_pred             ------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                            |  |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       394 ~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~  432 (509)
T 3ivr_A          394 AGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIG  432 (509)
T ss_dssp             EEEC-----------------------------------
T ss_pred             eCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEe
Confidence                  2  889999999999999999999999999985

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.8e-62  Score=482.77  Aligned_cols=379  Identities=19%  Similarity=0.264  Sum_probs=283.9

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. ..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        89 pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l  168 (570)
T 4gr5_A           89 PDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSL  168 (570)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred             CCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHH
Confidence            3444443 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +.++++++|++++....+...   ..+...+                   ....  ............++|+++|+||||
T Consensus       169 ~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~d~a~i~~TSG  224 (570)
T 4gr5_A          169 EDTGAPLLVTSRPLSGRLTGT---TTLYVED-------------------EAAS--DAPAGNLATGVGPEDVACVMFTSG  224 (570)
T ss_dssp             HHHTCSEEEECTTTTTSSCSS---EEEECCC----------------------------CCCCCCCCCTTSEEEEECCSS
T ss_pred             HhcCCCEEEecchhhhcccCC---cceeeec-------------------cccc--cccccccCCCCCCCCeEEEEECCc
Confidence            999999999987654332211   1111000                   0000  000122233456899999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIE  250 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~  250 (424)
                      |||.||+|+++|+++......   ........+++++..+|++|..+. ..++.++..|+++++.+  .+++..+++.++
T Consensus       225 TTG~PKgV~~th~~l~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~  300 (570)
T 4gr5_A          225 STGRPKGVMSPHRALTGTYLG---QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVA  300 (570)
T ss_dssp             CCSSCCCEEEEHHHHHHHHSS---CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHHH
T ss_pred             CCCCCeEEEEecHHHHHHHHh---hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHHH
Confidence            999999999999998765432   111223345899999999886665 36788999999999886  478999999999


Q ss_pred             HccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC--
Q 014435          251 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV--  328 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--  328 (424)
                      ++++|++.++|+++..|.+...   ..+++||.+++||+++++++.+++.+.++++++++.||+||++++++......  
T Consensus       301 ~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~  377 (570)
T 4gr5_A          301 RHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD  377 (570)
T ss_dssp             HHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred             HcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence            9999999999999999987643   24789999999999999999999999998899999999999887666533221  


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------h--------hccccCceEEE
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------E--------LTVNCNLFSYF  387 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~--------~~~~TgD~g~~  387 (424)
                      ......++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||             +        +||+|||+|++
T Consensus       378 ~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~  456 (570)
T 4gr5_A          378 LSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR  456 (570)
T ss_dssp             TTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred             cCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence            134456799999999999999 7899999999999999999999999             1        59999999999


Q ss_pred             ecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++||.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       457 d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~  501 (570)
T 4gr5_A          457 RADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA  501 (570)
T ss_dssp             CTTSCEEEEEC----------------------------------
T ss_pred             CCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEE
Confidence            999987       3 999999999999999999999999999985

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.5e-62  Score=474.17  Aligned_cols=384  Identities=19%  Similarity=0.235  Sum_probs=322.6

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ   91 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~   91 (424)
                      ++..++. ..+++||+||.++++++|++|+++ |.++|++|+++++|++++++++|||+++|++++|+++.++.+++.++
T Consensus        15 p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~   94 (511)
T 3e7w_A           15 PQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKI   94 (511)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHH
T ss_pred             CCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHH
Confidence            3344443 346799999999999999999875 88899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCC
Q 014435           92 VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus        92 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      ++.++++++|++++......                     ........++++...... .........++++++|+|||
T Consensus        95 l~~~~~~~li~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TS  152 (511)
T 3e7w_A           95 IESSGAELLIHAAGLSIDAV---------------------GQQIQTVSAEELLENEGG-SVSQDQWVKEHETFYIIYTS  152 (511)
T ss_dssp             HHHHTCCEEEESSSCCTTCC---------------------CCSSCEEEHHHHHTSCSC-CCCGGGSCCTTSEEEEEEEC
T ss_pred             HHhCCCCEEEecccccchhc---------------------ccccceecHhhhhccccC-CccccccCCCCCeEEEEECC
Confidence            99999999999754321110                     001122334444433221 12223345678999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRA  248 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~  248 (424)
                      ||||.||+|.++|+++..............  .++++++.+|++|..++. .++.++..|+++++.+.   +++..+++.
T Consensus       153 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~  229 (511)
T 3e7w_A          153 GSTGNPKGVQISAANLQSFTDWICADFPVS--GGKIFLNQAPFSFDLSVM-DLYPCLQSGGTLHCVTKDAVNKPKVLFEE  229 (511)
T ss_dssp             CTTSSCEEEEEEHHHHHHHHHHHHHHSTTT--TTCEEEECSCTTSTHHHH-HHHHHHHTTCEEEECCHHHHHSHHHHHHH
T ss_pred             CCCCCCCEEEEcHHHHHHHHHHHHHhcCCC--ccceEEEeCCccHHHHHH-HHHHHHhcCCEEEEcChhhhcCHHHHHHH
Confidence            999999999999999998877766655543  349999999999999984 78899999999999876   689999999


Q ss_pred             HHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC
Q 014435          249 IEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV  328 (424)
Q Consensus       249 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~  328 (424)
                      ++++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.++++++++.||+||+++.++......
T Consensus       230 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  309 (511)
T 3e7w_A          230 LKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN  309 (511)
T ss_dssp             HHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECH
T ss_pred             HHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccc
Confidence            99999999999999999999887766777899999999999999999999999998899999999999987666433221


Q ss_pred             ---CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh--------------hh--ccccCceEEEec
Q 014435          329 ---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF--------------EL--TVNCNLFSYFRS  389 (424)
Q Consensus       329 ---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy--------------~~--~~~TgD~g~~~~  389 (424)
                         ......++|+|+++++++|+| +++++++.|+.|||+++|+.++.||              ++  ||+|||+|++ +
T Consensus       310 ~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~  387 (511)
T 3e7w_A          310 DVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-Q  387 (511)
T ss_dssp             HHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-E
T ss_pred             cccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-c
Confidence               133556799999999999999 6899999999999999999999999              12  7999999999 5


Q ss_pred             CCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          390 NDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       390 ~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ||.+       | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       388 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~  430 (511)
T 3e7w_A          388 DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIP  430 (511)
T ss_dssp             TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEE
T ss_pred             CCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEE
Confidence            8877       3 999999999999999999999999999984

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=8.2e-62  Score=480.37  Aligned_cols=377  Identities=15%  Similarity=0.168  Sum_probs=311.8

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus        41 Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il  120 (620)
T 4dg8_A           41 PHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELC  120 (620)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred             CCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHH
Confidence            4455554 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      ++++++++++++.........  ..                     ......   .............++++++++||||
T Consensus       121 ~~~~~~~vl~~~~~~~~~~~~--~~---------------------~~~~~~---~~~~~~~~~~~~~~~d~a~iiyTSG  174 (620)
T 4dg8_A          121 RQVDCRLILDCSTTPTPANGL--PC---------------------VPVRHL---PAAPASVARPCFAADQIAYINFSSG  174 (620)
T ss_dssp             HHHTEEEEEECCSSCCCCTTS--CE---------------------EEGGGC---CCCCCCSSCCCCCTTSEEEEEEEBS
T ss_pred             HhCCCcEEEecCcccccccCC--ce---------------------eeeccC---CcCCccccCCCCCCCCeEEEEECCC
Confidence            999999999765432211110  00                     000100   0000112223346899999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecC--CCCHHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIE  250 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~  250 (424)
                      |||.||+|+++|+++...... ...  .....+++++..+|++|..++. .++.++..|+++++.+  .+++..+.+.++
T Consensus       175 STG~PKgV~~th~~l~~~~~~-~~~--~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~  250 (620)
T 4dg8_A          175 TTGRPKAIACTHAGITRLCLG-QSF--LAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCVLNDLGPLDPGVLRQLIG  250 (620)
T ss_dssp             SSSSCEEEEEEHHHHHHHHSS-CGG--GTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCSSSCCHHHHHHHHH
T ss_pred             ccccCeEEEEchHHHHHHHHH-HHh--hCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEEeCccccCCHHHHHHHHH
Confidence            999999999999998776443 222  2233459999999999999985 6889999999999964  579999999999


Q ss_pred             HccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCC--C
Q 014435          251 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL--V  328 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~--~  328 (424)
                      ++++|++.++|+++..+.+...   ..+++||.+++||++++++..+++.+.++++++++.||+||++..++.....  .
T Consensus       251 ~~~vt~~~~~Ps~~~~l~~~~~---~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~  327 (620)
T 4dg8_A          251 ERGADSAWLTASLFNTLVDLDP---DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDD  327 (620)
T ss_dssp             TTCCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGG
T ss_pred             HhCCcEEEccHHHHHHHHhcCh---hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccc
Confidence            9999999999999999986532   3478999999999999999999998888889999999999998766543222  2


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCcc-CCCCCceeEEEecCCcchhh------------h--------hccccCceEEE
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKP-LPPNQLGEIWVRGPNVTPVF------------E--------LTVNCNLFSYF  387 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~-~~~g~~Gel~v~~~~~~~gy------------~--------~~~~TgD~g~~  387 (424)
                      ......++|+|+++++++|+| +++++ ++.|+.|||+++|+.++.||            +        +||+|||+|++
T Consensus       328 ~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~  406 (620)
T 4dg8_A          328 LEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY  406 (620)
T ss_dssp             GGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence            234567899999999999999 46655 89999999999999999999            1        68999999999


Q ss_pred             ecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          388 RSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       388 ~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++||.+      |  ||++|++|+|.|||++|.+||+|++|+|++
T Consensus       407 ~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~  451 (620)
T 4dg8_A          407 DEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLV  451 (620)
T ss_dssp             CTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEE
T ss_pred             CCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEE
Confidence            999987      3  999999999999999999999999999974

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.8e-61  Score=474.02  Aligned_cols=378  Identities=18%  Similarity=0.221  Sum_probs=308.4

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. ..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        53 p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il  132 (563)
T 1amu_A           53 PNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYIL  132 (563)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred             CCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHH
Confidence            3444443 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      ++++++++|++++....+........+.....                 ..+ ....  .........++|+++++||||
T Consensus       133 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~--~~~~~~~~~~~d~a~i~~TSG  192 (563)
T 1amu_A          133 DDSQARMLLTQKHLVHLIHNIQFNGQVEIFEE-----------------DTI-KIRE--GTNLHVPSKSTDLAYVIYTSG  192 (563)
T ss_dssp             HHHTCSEEEECGGGHHHHTTSCCCSEEEECCC-----------------STT-TTSC--CSCCCCCCCTTSEEEEEEEC-
T ss_pred             HhcCCCEEEEcCchhhhhhhccccCceeeecc-----------------hhh-cccc--CccCCCCCCCCCeEEEEECCC
Confidence            99999999999877665554432211111110                 000 0000  111123346789999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i  249 (424)
                      |||.||+|+++|+++.............  ..++++++.+|++|..++. .++.++..|+++++.+.   +++..+++.+
T Consensus       193 TTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i  269 (563)
T 1amu_A          193 TTGNPKGTMLEHKGISNLKVFFENSLNV--TEKDRIGQFASISFDASVW-EMFMALLTGASLYIILKDTINDFVKFEQYI  269 (563)
T ss_dssp             ----CEEEEEESHHHHHHHHHHHHTSCC--CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCHHHHTCHHHHHHHH
T ss_pred             CCCCCcEEEEehHHHHHHHHHHHHhcCC--CCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEEEcChHhhcCHHHHHHHH
Confidence            9999999999999998876665544443  3449999999999999885 67889999999998875   6899999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC-
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV-  328 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-  328 (424)
                      +++++|++.++|+++..+...      .++++|.+++||+++++++.++|.+.   +++++.||+||++..++...... 
T Consensus       270 ~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~  340 (563)
T 1amu_A          270 NQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKE  340 (563)
T ss_dssp             HHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSS
T ss_pred             HHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccc
Confidence            999999999999998776432      36899999999999999999999764   78999999999987665533221 


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------h-------hccccCceEEEec
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------E-------LTVNCNLFSYFRS  389 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~-------~~~~TgD~g~~~~  389 (424)
                      ......++|+|+++++++|+| +++++++.|+.|||+++|+.++.||            +       +||+|||+|++++
T Consensus       341 ~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~  419 (563)
T 1amu_A          341 TIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS  419 (563)
T ss_dssp             CCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred             cCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC
Confidence            123567899999999999999 7899999999999999999999999            1       3999999999999


Q ss_pred             CCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          390 NDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       390 ~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ||++       | |+++|++|+|.|||++|.+||+|.+|+|++
T Consensus       420 dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~  462 (563)
T 1amu_A          420 DGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV  462 (563)
T ss_dssp             TSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEE
Confidence            9987       3 999999999999999999999999999974

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=5.1e-61  Score=476.48  Aligned_cols=392  Identities=20%  Similarity=0.237  Sum_probs=322.7

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        39 pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l  118 (617)
T 3rg2_A           39 SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYA  118 (617)
T ss_dssp             CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHH
T ss_pred             CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHH
Confidence            3444444 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchH--------HH-hcCC-CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCC
Q 014435           93 KDSNPKLVITVPELWD--------KV-KDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQT  162 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~--------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (424)
                      +.+++++++++.+...        .+ .... ...+......            ....+.+......  .........++
T Consensus       119 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~~~~  184 (617)
T 3rg2_A          119 SQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS------------GEHNLQDAINHPA--EDFTATPSPAD  184 (617)
T ss_dssp             HHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC------------STTBHHHHHHSCC--SSCCCCCCCTT
T ss_pred             hhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc------------cccchhhhhcccc--cccCCCCCCCC
Confidence            9999999999876531        11 1111 1222221110            1112233332222  22233445679


Q ss_pred             CEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHH-HHHHHhhcCceEEecCCCC
Q 014435          163 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKFD  241 (424)
Q Consensus       163 ~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~  241 (424)
                      ++++++|||||||.||+|+++|+++...+..........  .++++++.+|++|.+++.. .++.++..|+++++.+..+
T Consensus       185 ~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~  262 (617)
T 3rg2_A          185 EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFT--QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPS  262 (617)
T ss_dssp             SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCC--TTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCC
T ss_pred             CeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCC--CcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCC
Confidence            999999999999999999999999998887776665554  3499999999999998864 4788999999999998899


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhcccccc--CCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCC
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA  319 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  319 (424)
                      +..+++.++++++|++.++|+++..+++......  ..++++|.+++||+++++++.+++.+.+ ++++++.||+||++.
T Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~  341 (617)
T 3rg2_A          263 ATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLV  341 (617)
T ss_dssp             HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCccee
Confidence            9999999999999999999999999987644332  3688999999999999999999999988 699999999999875


Q ss_pred             ceeecCCCCCccCCCcccccc-CCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceE
Q 014435          320 PISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFS  385 (424)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g  385 (424)
                      .++.. .........++|+|+ ++.+++|+| +++++++.|+.|||+++|+.++.||             ++||+|||+|
T Consensus       342 ~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~  419 (617)
T 3rg2_A          342 NYTRL-DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLI  419 (617)
T ss_dssp             EECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEE
T ss_pred             ecccC-CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceE
Confidence            44332 221123345789997 788999999 7899999999999999999999999             6789999999


Q ss_pred             EEecCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          386 YFRSNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       386 ~~~~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      ++++||.+      |  |+++|++|+|.|||++|.+||+|.+|+|++
T Consensus       420 ~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~  466 (617)
T 3rg2_A          420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVS  466 (617)
T ss_dssp             EECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEE
T ss_pred             EEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEe
Confidence            99999987      3  999999999999999999999999999974

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.1e-60  Score=463.68  Aligned_cols=393  Identities=21%  Similarity=0.258  Sum_probs=309.3

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++. ..+++||+||.++++++|++|++.   +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus        15 pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l   91 (501)
T 3ipl_A           15 GHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQM   91 (501)
T ss_dssp             TTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred             CCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHH
Confidence            3444443 345799999999999999999986   899999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCC--CeEEEecCCCccccccccCCCcc-cchhhhhhccCCCCCCCCCCCCCCCEEEEec
Q 014435           93 KDSNPKLVITVPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSVTDIPDVSVKQTDAAALLY  169 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  169 (424)
                      +.++++++|++.+..........  ....................... ...+.... .............++|+++++|
T Consensus        92 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~a~i~~  170 (501)
T 3ipl_A           92 RSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVP-KESPSNILNTSFNLDDIASIMF  170 (501)
T ss_dssp             HHTTCCEEEESSCCCCTTSEEEETTC---------------------------------CCHHHHTCCCCCTTSEEEEEE
T ss_pred             HhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccc-cCCcccccccCCCCCCeEEEEE
Confidence            99999999999775443321100  00000000000000000000000 00000000 0000111223456899999999


Q ss_pred             CCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHH
Q 014435          170 SSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI  249 (424)
Q Consensus       170 TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  249 (424)
                      ||||||.||+|.++|+++..............  .++++++.+|++|.+|+. .++.++..|+++++.+.+++..+++.+
T Consensus       171 TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i  247 (501)
T 3ipl_A          171 TSGTTGPQKAVPQTFRNHYASAIGCKESLGFD--RDTNWLSVLPIYHISGLS-VLLRAVIEGFTVRIVDKFNAEQILTMI  247 (501)
T ss_dssp             CCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCC--TTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHH
T ss_pred             CCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCC--ccCEEEEeCcHHHHHHHH-HHHHHHHcCceEEeCCCCCHHHHHHHH
Confidence            99999999999999999998877766555443  449999999999999996 578899999999999999999999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      +++++|++.++|+++..|.+......   .++|.+++||+++++++.+++.+.  ++++++.||+||+++.+....+...
T Consensus       248 ~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~  322 (501)
T 3ipl_A          248 KNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEML  322 (501)
T ss_dssp             HHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHHH
T ss_pred             HHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCcccc
Confidence            99999999999999999988765433   389999999999999999999884  7999999999998876655444333


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-----------hhccccCceEEEecCCce-----
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-----------ELTVNCNLFSYFRSNDHN-----  393 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-----------~~~~~TgD~g~~~~~g~~-----  393 (424)
                      ....+++|+|+++++++|+|++      .|+.|||+++|+.++.||           ++||+|||+|+++++|.+     
T Consensus       323 ~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~GR  396 (501)
T 3ipl_A          323 HARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDR  396 (501)
T ss_dssp             HHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEEE
T ss_pred             ccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEcc
Confidence            4567899999999999999953      567899999999999999           678999999999999987     


Q ss_pred             --e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 --D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 --d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                        | |+++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       397 ~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~  430 (501)
T 3ipl_A          397 RKDLIISGGENIYPYQIETVAKQFPGISDAVCVG  430 (501)
T ss_dssp             CCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             ccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence              3 999999999999999999999999999985

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=8.8e-61  Score=463.69  Aligned_cols=371  Identities=24%  Similarity=0.357  Sum_probs=303.9

Q ss_pred             CCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHh
Q 014435           16 RPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD   94 (424)
Q Consensus        16 ~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~   94 (424)
                      .+++. ..+++||+||.++++++|+.|.     .|++|+++++|++++++++|||+++|++++|++|.++.+++.+++++
T Consensus        39 ~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~  113 (505)
T 3nyq_A           39 RPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSD  113 (505)
T ss_dssp             SEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHH
T ss_pred             CeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHH
Confidence            55554 3456999999999999998875     37899999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCC
Q 014435           95 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT  174 (424)
Q Consensus        95 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  174 (424)
                      ++++++|++++............+..                     ..     ......+.....++|+++++||||||
T Consensus       114 ~~~~~vi~~~~~~~~~~~~~~~~~~~---------------------~~-----~~~~~~~~~~~~~~d~a~i~~TSGTT  167 (505)
T 3nyq_A          114 SAPSLVLAPPDAELPPALGALERVDV---------------------DV-----RARGAVPEDGADDGDPALVVYTSGTT  167 (505)
T ss_dssp             HCCSEEEECTTCCCCGGGTTSEEEEC---------------------CT-----TCCCCCCCCCCCTTSEEEEEEECCSS
T ss_pred             CCCCEEEECCccccchhhcccccccc---------------------cc-----ccccCCCCCCCCCCCeEEEEeCCCCc
Confidence            99999999865211000000000000                     00     00011223345678999999999999


Q ss_pred             CCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccc
Q 014435          175 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV  254 (424)
Q Consensus       175 G~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~  254 (424)
                      |.||+|+++|+++...............  ++++++.+|++|..|+...++.++..|+++++.+.+++..+++.+ ++++
T Consensus       168 G~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~  244 (505)
T 3nyq_A          168 GPPKGAVIPRRALATTLDALADAWQWTG--EDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGA  244 (505)
T ss_dssp             SSCEEEEEEHHHHHHHHHHHHHHHTCCT--TCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTC
T ss_pred             CCCCeEEEeHHHHHHHHHHHHHHhCCCC--CcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCC
Confidence            9999999999999998877766655543  499999999999999876788999999999999999999999999 8899


Q ss_pred             eEEEechHHHHHHHhcccc---ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCcc
Q 014435          255 TVWWVVPPIILALAKNSLV---RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR  331 (424)
Q Consensus       255 t~~~~~p~~~~~l~~~~~~---~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~  331 (424)
                      |+++++|+++..+.+....   ....++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++.....  ..
T Consensus       245 t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--~~  321 (505)
T 3nyq_A          245 TMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRADG--EP  321 (505)
T ss_dssp             CEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS--CC
T ss_pred             eEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCCCC--CC
Confidence            9999999999999874322   223467899999999999999999999987 69999999999998766554333  45


Q ss_pred             CCCccccccCCcEEEEeeCCCCccCCC---CCceeEEEecCCcchhh-------------hhccccCceEEEecCCce--
Q 014435          332 RSGSAGTLVAGVEAQIVSVDTLKPLPP---NQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN--  393 (424)
Q Consensus       332 ~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~--  393 (424)
                      ..+++|+|+++++++|+| +++++++.   |+.|||+++|+.++.||             ++||+|||+|++++||.+  
T Consensus       322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~  400 (505)
T 3nyq_A          322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRI  400 (505)
T ss_dssp             CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEE
Confidence            678999999999999999 67888876   89999999999999999             679999999999999977  


Q ss_pred             -----e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -----D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -----d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                           |  ++++|++|+|.|||++|.+||+|.+|+|+|
T Consensus       401 ~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~  438 (505)
T 3nyq_A          401 VGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG  438 (505)
T ss_dssp             EEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             eCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEe
Confidence                 3  999999999999999999999999999985

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.4e-60  Score=470.81  Aligned_cols=384  Identities=21%  Similarity=0.268  Sum_probs=313.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCC---HHHHHHHHHhcCCe
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT---VSELSKQVKDSNPK   98 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~---~~~i~~~l~~~~~~   98 (424)
                      ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|++|.++   .+++.++++.++++
T Consensus        38 ~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~  117 (590)
T 3kxw_A           38 EETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPV  117 (590)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCS
T ss_pred             eEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCC
Confidence            467999999999999999999999999999999999999999999999999999999999884   57899999999999


Q ss_pred             EEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcc
Q 014435           99 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK  178 (424)
Q Consensus        99 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  178 (424)
                      +++++.+....+..........            .........+.+.....  .........++|+++|+|||||||.||
T Consensus       118 ~vi~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PK  183 (590)
T 3kxw_A          118 IVLMIADHIKKFTADELNTNPK------------FLKIPAIALESIELNRS--SSWQPTSIKSNDIAFLQYTSGSTMHPK  183 (590)
T ss_dssp             EEEECHHHHHHHCC-----CCE------------ETTEEEEEGGGCCGGGG--GGCCCCCCCTTSEEEEEECSSCSSSCC
T ss_pred             EEEeCHHHHHHHHHhhhhhccc------------ccccceeechhcccccc--ccCCCCCCCCCCeEEEEeCcCCCCCce
Confidence            9999987766654432100000            00000111111111111  122334556899999999999999999


Q ss_pred             hhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCC----CHHHHHHHHHHccc
Q 014435          179 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRV  254 (424)
Q Consensus       179 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~  254 (424)
                      +|+++|+++...+..........  .++++++.+|++|.+|+...++.++..|+++++.+++    ++..+++.++++++
T Consensus       184 gV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~  261 (590)
T 3kxw_A          184 GVMVSHHNLLDNLNKIFTSFHMN--DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKA  261 (590)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCC--TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTC
T ss_pred             EEEeeHHHHHHHHHHHHHhhCCC--CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCC
Confidence            99999999999887776655543  4499999999999999975588999999999998765    88999999999999


Q ss_pred             eEEEechHHHHHHHhc---cccccCCCCCeeEEEecCCCCCHHHHHHHHHhCC-----CCeEEecccCccCCCceeecCC
Q 014435          255 TVWWVVPPIILALAKN---SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP-----GATIFQGYGMTETCAPISLENP  326 (424)
Q Consensus       255 t~~~~~p~~~~~l~~~---~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~  326 (424)
                      |++.++|.++..+.+.   ......+++++|.+++||+++++++.++|.+.++     +.++++.||+||++++++...+
T Consensus       262 t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~  341 (590)
T 3kxw_A          262 TISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTP  341 (590)
T ss_dssp             SEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCT
T ss_pred             eeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccC
Confidence            9999999999988775   3334567899999999999999999999999873     4589999999999887765432


Q ss_pred             C-------------------------CCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------
Q 014435          327 L-------------------------VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------  375 (424)
Q Consensus       327 ~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------  375 (424)
                      .                         .......++|+|+++  ++|+|++++++++.|+.|||+|+|+.++.||      
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~  419 (590)
T 3kxw_A          342 GSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEE  419 (590)
T ss_dssp             TSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHH
T ss_pred             CCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhH
Confidence            1                         112344688999988  8899977799999999999999999999999      


Q ss_pred             ------h-------h--ccccCceEEEecCCce-------e-eEeeeeeeChhhHHHHH-hcCCCcc--cceecC
Q 014435          376 ------E-------L--TVNCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLL-VSHPEIL--DAVVIP  424 (424)
Q Consensus       376 ------~-------~--~~~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l-~~~p~V~--~a~v~g  424 (424)
                            +       +  ||+|||+|+++ +|.+       | |+++|++|+|.|||++| ..+|.|.  +|+|++
T Consensus       420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~  493 (590)
T 3kxw_A          420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFV  493 (590)
T ss_dssp             HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEE
T ss_pred             HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEE
Confidence                  1       4  99999999999 8877       3 88999999999999999 8899998  788764

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=7.6e-59  Score=456.88  Aligned_cols=377  Identities=16%  Similarity=0.158  Sum_probs=276.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      ++|||+||.++++++|+.|++.|+ +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        54 ~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~  132 (562)
T 3ite_A           54 EDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFV  132 (562)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEE
Confidence            579999999999999999999999 7999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcchhhh
Q 014435          103 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL  182 (424)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  182 (424)
                      +++......... .......              ....+.+.+....  .........++++++|+|||||||.||+|++
T Consensus       133 ~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~  195 (562)
T 3ite_A          133 CDNNFDGVELPP-ETKVLDT--------------KNQSFIENLSTQD--TSDILNNYPENLDAYLLYTSGSTGTPKGVRV  195 (562)
T ss_dssp             CTTTTTTCCCCT-TCEEEET--------------TCHHHHHHHHHSC--CSCCCCCCCTTSEEEEEEECC---CCEEEEE
T ss_pred             ccccccccccCc-cceeecc--------------cchhhhhhccccc--ccccccCCCCCCcEEEEECCCCCCCCcEEEE
Confidence            876543321111 1111110              0112222222222  1222234457889999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhh------hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCC-HHHHHHHHHHccce
Q 014435          183 THKNFIAASLMISAHQE------LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVT  255 (424)
Q Consensus       183 t~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~i~~~~~t  255 (424)
                      +|+++............      ......+++++..|+.|..++. .++.++..|+++++.+.+. +..+.+.++++++|
T Consensus       196 th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t  274 (562)
T 3ite_A          196 SRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVT  274 (562)
T ss_dssp             EHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH-HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCC
T ss_pred             CchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH-HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCC
Confidence            99999887665544322      1123348899999999888874 6778899999999887643 57788999999999


Q ss_pred             EEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCCc
Q 014435          256 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS  335 (424)
Q Consensus       256 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  335 (424)
                      ++.++|++++.+....    .++++||.+++||+++++++.++|++.+ ++++++.||+||+++.++...... ....++
T Consensus       275 ~~~~~P~~l~~~~~~~----~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~  348 (562)
T 3ite_A          275 HAGIVPSLLDQTGLVP----EDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILP-DSDTRC  348 (562)
T ss_dssp             EEEECHHHHHHHTCCG----GGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCT-TSCTTE
T ss_pred             EEEcCHHHHhhcccCc----cccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecC-CCCCcc
Confidence            9999999988774433    3578999999999999999999999876 799999999999887666543322 345678


Q ss_pred             cccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh------------hh--ccccCceEEEecCCce-------e
Q 014435          336 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF------------EL--TVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       336 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy------------~~--~~~TgD~g~~~~~g~~-------d  394 (424)
                      +|+|+++++++|+|++++++++.|+.|||+++|+.++.||            ++  ||+|||+|++++||.+       |
T Consensus       349 ~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd  428 (562)
T 3ite_A          349 IGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDE  428 (562)
T ss_dssp             EEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC--
T ss_pred             ccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccC
Confidence            9999999999999988899999999999999999999999            23  9999999999999987       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcC-CCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSH-PEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~-p~V~~a~v~g  424 (424)
                       |+++|++|+|.|||++|.+| |.+.+++|++
T Consensus       429 ~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~  460 (562)
T 3ite_A          429 QVKVRGQRLELGEVSEVIRSLSPTDIDVVTLL  460 (562)
T ss_dssp             --------------------------------
T ss_pred             EEeECcEEECHHHHHHHHHhcCCCceeEEEEE
Confidence             99999999999999999998 7787777763

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=4.4e-58  Score=489.30  Aligned_cols=383  Identities=19%  Similarity=0.221  Sum_probs=315.8

Q ss_pred             cCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLVL-PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      ++..++.. .+++||+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus       478 p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il  557 (1304)
T 2vsq_A          478 PDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYML  557 (1304)
T ss_dssp             TTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred             CCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHH
Confidence            44555543 45699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +++++++++++++....+..+......+...+.                ... .  .. ...+.....++++++++||||
T Consensus       558 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~--~~-~~~~~~~~~~~~~ayiiyTSG  617 (1304)
T 2vsq_A          558 ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ----------------TRF-E--EQ-ASDPATAIDPNDPAYIMYTSG  617 (1304)
T ss_dssp             HHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG----------------GGG-G--SC-SSCCCCCCCTTSEEEEEEECC
T ss_pred             HHcCCCEEEECcchhhhhhccCCCCcEEEeccc----------------ccc-c--cc-cCCCCCCCCCCCeEEEEeCCC
Confidence            999999999998765543333211111111100                000 0  00 122233456899999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i  249 (424)
                      |||.||||+++|+++.+. ......  +....+++++...|++|..+.+ .++.++..|+++++.+.   .++..+.+.+
T Consensus       618 STG~PKgV~~~h~~l~~~-~~~~~~--~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i  693 (1304)
T 2vsq_A          618 TTGKPKGNITTHANIQGL-VKHVDY--MAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLIIADEHTLLDTERLTDLI  693 (1304)
T ss_dssp             SSSSCEEEEEEHHHHHHH-HSSCCS--SCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCGGGTTCHHHHHHHH
T ss_pred             CCCCCCEEEEehHHHHHH-HHHHHh--cCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEEECChhhcCCHHHHHHHH
Confidence            999999999999998765 222222  2223458999999999888774 78899999999999874   6899999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC-
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV-  328 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-  328 (424)
                      +++++|++.++|+++..+.+...   ..+++||.+++||+++++++.++|.+.+++.+++|.||+||++..++...... 
T Consensus       694 ~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~  770 (1304)
T 2vsq_A          694 LQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL  770 (1304)
T ss_dssp             HHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC
T ss_pred             HHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc
Confidence            99999999999999999976532   13578999999999999999999999887789999999999987666543221 


Q ss_pred             -CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------------hhccccCceEEEe
Q 014435          329 -GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------------ELTVNCNLFSYFR  388 (424)
Q Consensus       329 -~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------------~~~~~TgD~g~~~  388 (424)
                       ......++|+|+++++++|+| ++++++|.|+.|||+|+|+.++.||                   ++||+|||+|+++
T Consensus       771 ~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~  849 (1304)
T 2vsq_A          771 PDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWL  849 (1304)
T ss_dssp             CSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEEC
T ss_pred             cccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEc
Confidence             234556899999999999999 6899999999999999999999999                   1389999999999


Q ss_pred             cCCce------e--eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          389 SNDHN------D--FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       389 ~~g~~------d--i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +||.+      |  ||++|++|+|.|||++|.+||+|++|+|++
T Consensus       850 ~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~  893 (1304)
T 2vsq_A          850 PDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA  893 (1304)
T ss_dssp             TTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEE
T ss_pred             CCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEE
Confidence            99988      3  999999999999999999999999999974

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=6.3e-56  Score=428.54  Aligned_cols=352  Identities=18%  Similarity=0.197  Sum_probs=280.0

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCC---CCCHHHHHHHHHhcCCeE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP---VYTVSELSKQVKDSNPKL   99 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~i~~~l~~~~~~~   99 (424)
                      ++|||+||.++++++|++|+++|+ +||+|+++++|++++++++|||+++|++++|+++   .++.+++.++++.+++++
T Consensus        57 ~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~  135 (480)
T 3t5a_A           57 ITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVA  135 (480)
T ss_dssp             EEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSE
T ss_pred             EEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence            679999999999999999999996 9999999999999999999999999999999999   778999999999999999


Q ss_pred             EEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCcch
Q 014435          100 VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG  179 (424)
Q Consensus       100 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  179 (424)
                      +|++++....+..........             ....+..++.......  .........++++++|+|||||||.||+
T Consensus       136 vi~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKg  200 (480)
T 3t5a_A          136 ILTTSSAVDDVVQHVARRPGE-------------SPPSIIEVDLLDLDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAG  200 (480)
T ss_dssp             EEECTTTHHHHHHTCC-------------------CCEEEEGGGSCTTCC-----CCCCSSCCSEEEEECC------CCC
T ss_pred             EEeChhHHHHHHHHHhccccc-------------cccceeEecccccccc--cCCCCCCCCCCceEEEEecCCCCCCCcE
Confidence            999998877666543211000             0001111111111111  1223344568899999999999999999


Q ss_pred             hhhcHHHHHHHHHHHHhhhhhcc----CCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCC----CHHHHHHHHHH
Q 014435          180 VILTHKNFIAASLMISAHQELVG----ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEK  251 (424)
Q Consensus       180 v~~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~  251 (424)
                      |+++|+++...+...........    ..++++++.+|++|.+|+...++.++..|+++++.++.    ++..+++.+++
T Consensus       201 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~  280 (480)
T 3t5a_A          201 VVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS  280 (480)
T ss_dssp             EEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTS
T ss_pred             EEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHh
Confidence            99999999888776665554433    11599999999999999877789999999999998753    89999999999


Q ss_pred             ccceEEEechHHHHHHHhc----cccccCCCCCeeEEEecCCCCCHHHHHHHHHhC-----CCCeEEecccCccCCCcee
Q 014435          252 YRVTVWWVVPPIILALAKN----SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI-----PGATIFQGYGMTETCAPIS  322 (424)
Q Consensus       252 ~~~t~~~~~p~~~~~l~~~----~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~yG~tE~~~~~~  322 (424)
                      +++| +.++|+++..++..    ......++++||.+++||+++++++.++|.+.+     +++.+++.||+||+++.++
T Consensus       281 ~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  359 (480)
T 3t5a_A          281 DFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA  359 (480)
T ss_dssp             SSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred             hcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence            9999 88899988887764    333456789999999999999999999999988     3468999999999988777


Q ss_pred             ecCCCCC-----------------------ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh----
Q 014435          323 LENPLVG-----------------------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----  375 (424)
Q Consensus       323 ~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy----  375 (424)
                      .......                       .....++|+|++ ++++|+|++++++++.|+.|||+|+|+.++.||    
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~p  438 (480)
T 3t5a_A          360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKP  438 (480)
T ss_dssp             ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBH
T ss_pred             ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCc
Confidence            6543311                       134458999999 999999977799999999999999999999999    


Q ss_pred             -------h-------------hccccCceEEEecCCce
Q 014435          376 -------E-------------LTVNCNLFSYFRSNDHN  393 (424)
Q Consensus       376 -------~-------------~~~~TgD~g~~~~~g~~  393 (424)
                             .             +||+|||+|+++ ||.+
T Consensus       439 e~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l  475 (480)
T 3t5a_A          439 DESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKM  475 (480)
T ss_dssp             HHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEE
T ss_pred             chhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEE
Confidence                   0             299999999996 8876

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=3.5e-41  Score=320.96  Aligned_cols=260  Identities=18%  Similarity=0.229  Sum_probs=217.9

Q ss_pred             CCC-CCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhh-hccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEe
Q 014435          159 VKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  236 (424)
Q Consensus       159 ~~~-~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~  236 (424)
                      ..+ +++++++|||||||.||+|+++|+++............ .....+++++...|+.|..+....++.++..|+++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  161 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP  161 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence            345 88999999999999999999999999876655543332 2233459999999987766665677888999999999


Q ss_pred             cCCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCC--CCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccC
Q 014435          237 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  314 (424)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~--~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~  314 (424)
                      .+..++..+++.++++++|+++++|+++..|++.......+  ++++|.+++||+++++++.+++++.| ++++++.||+
T Consensus       162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~  240 (436)
T 3qov_A          162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGM  240 (436)
T ss_dssp             CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcc
Confidence            98889999999999999999999999999998876554443  78999999999999999999999998 7999999999


Q ss_pred             ccCCCc-eeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecCC--
Q 014435          315 TETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSND--  391 (424)
Q Consensus       315 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~g--  391 (424)
                      ||+++. +....+     .....+.|.++++++|+|++++++++.|+.|||+++|..-.....+||+|||+|+++++|  
T Consensus       241 TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~~~~~~y~TGDl~~~~~~gc~  315 (436)
T 3qov_A          241 TEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRYRTRDLTRILPGKCP  315 (436)
T ss_dssp             GGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCCSSCCCSEEEEEEECEECSCCT
T ss_pred             hhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcCCceEEEEEcCCEEEEcCCCCC
Confidence            998554 333321     122367777899999999889999999999999999965433337899999999999997  


Q ss_pred             ----c---e-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          392 ----H---N-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       392 ----~---~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                          .   +       | |+++|++|+|.+||++|.+||+|.+++|++
T Consensus       316 cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~  363 (436)
T 3qov_A          316 CGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLIT  363 (436)
T ss_dssp             TCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEE
T ss_pred             CCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEE
Confidence                3   2       3 999999999999999999999999998874

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=6.8e-41  Score=309.32  Aligned_cols=239  Identities=18%  Similarity=0.216  Sum_probs=201.8

Q ss_pred             CCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCC
Q 014435          161 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF  240 (424)
Q Consensus       161 ~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~  240 (424)
                      .+++++|+|||||||.||+|++||+++.+.+...........  ++++++.+|++|.+|+. .++.++..|+++++.++.
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~  112 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGP--GTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPT  112 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCT--TCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCC--CCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCcc
Confidence            377899999999999999999999999988877766655543  49999999999999995 677788888888877542


Q ss_pred             CHHHHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCc
Q 014435          241 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP  320 (424)
Q Consensus       241 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  320 (424)
                        .+.++.++++++|++.++|+++..|++.... ..++++||.+++||+++++++.+++++.  ++++++.||+||+++.
T Consensus       113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~  187 (358)
T 4gs5_A          113 --ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSH  187 (358)
T ss_dssp             --SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSE
T ss_pred             --ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccce
Confidence              2246778899999999999999999887653 3368899999999999999999999875  7999999999999887


Q ss_pred             eeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecCCce------e
Q 014435          321 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHN------D  394 (424)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~g~~------d  394 (424)
                      ++.....  ....+.+|.+.|++++.+.+           .||++++|+...   ++||+|||+|++++||.+      |
T Consensus       188 ~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~---~g~~~TGDlg~~d~~g~~~~GR~dd  251 (358)
T 4gs5_A          188 VALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTN---GQTVQTNDLVEIHGNAFQWIGRADN  251 (358)
T ss_dssp             EEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGGT---TCCEEEEEEEEECSSEEEEEEEGGG
T ss_pred             eeccccc--ccccceeeccCCCeEEEecC-----------cCceEEeccccc---CcceecCCccccccCceEEcccccC
Confidence            7765544  45667899999999888754           399999997643   479999999999999854      3


Q ss_pred             -eEeeeeeeChhhHHHHH---hcCCCcccceec
Q 014435          395 -FFCKLFQVAPAELEGLL---VSHPEILDAVVI  423 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l---~~~p~V~~a~v~  423 (424)
                       |+++|++|+|.|||++|   .+||.|.+|+|+
T Consensus       252 ~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv  284 (358)
T 4gs5_A          252 VINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFC  284 (358)
T ss_dssp             EEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             eEEECCEEECHHHHHHHHHHhccCCCccEEEEE
Confidence             99999999999999877   468999999886

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=2.6e-39  Score=308.13  Aligned_cols=261  Identities=19%  Similarity=0.231  Sum_probs=212.3

Q ss_pred             CCCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhh-hhccCCCcEEEEecch-HHHHHHHHHHHHHhhcCceEE
Q 014435          158 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  235 (424)
Q Consensus       158 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~  235 (424)
                      ...++++++++|||||||.||+|+++|+++........... ......+++++..+|+ +|..++. ..+.++..|++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~  164 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVI  164 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEE
Confidence            34568899999999999999999999999877655443322 1222345899999998 6777764 6778899999999


Q ss_pred             ecCCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCC--CCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEeccc
Q 014435          236 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  313 (424)
Q Consensus       236 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~--~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG  313 (424)
                      +.+.+++..+++.++++++|+++++|+++..|++.......+  ++++|.+++||+++++++.+++++.+ ++++++.||
T Consensus       165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG  243 (437)
T 2y27_A          165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG  243 (437)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence            888889999999999999999999999999998765433333  47999999999999999999999888 799999999


Q ss_pred             CccCCCc-eeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEec-CC
Q 014435          314 MTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS-ND  391 (424)
Q Consensus       314 ~tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~-~g  391 (424)
                      +||+++. +....+.    .....+.+.++++++|+|++++++++.|+.|||+++|..-...-.+||+|||+|++++ +|
T Consensus       244 ~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~~~~~~~y~TGDl~~~~~~~G  319 (437)
T 2y27_A          244 LSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPGTA  319 (437)
T ss_dssp             ETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCCSEEEEEEECEECCSS
T ss_pred             chhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcCCchhheeecCCEEEEeCCCC
Confidence            9998443 4433322    1112566778999999998789999999999999998542211268999999999998 58


Q ss_pred             c-------e-----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          392 H-------N-----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       392 ~-------~-----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +       +     | ++++|++|+|.+||++|.+||+|.+++|++
T Consensus       320 ~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~  365 (437)
T 2y27_A          320 RTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIV  365 (437)
T ss_dssp             SSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEE
T ss_pred             CCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEE
Confidence            6       2     3 889999999999999999999999888763

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=3.1e-39  Score=308.15  Aligned_cols=260  Identities=20%  Similarity=0.231  Sum_probs=211.2

Q ss_pred             CCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhh-hhccCCCcEEEEecch-HHHHHHHHHHHHHhhcCceEEe
Q 014435          159 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVVS  236 (424)
Q Consensus       159 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~  236 (424)
                      ..++++++++|||||||.||+|.++|+++........... ......+++++..+|+ +|..++ ...+.++..|+++++
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVP  167 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEEC
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEE
Confidence            4568899999999999999999999999877655443322 1222345899999998 566666 367788899999999


Q ss_pred             cCCCCHHHHHHHHHHccceEEEechHHHHHHHhccccccCC--CCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccC
Q 014435          237 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  314 (424)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~--~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~  314 (424)
                      .+.+++..+++.++++++|+++++|+++..|++.......+  ++++|.+++||+++++++.+++++.+ ++++++.||+
T Consensus       168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~  246 (443)
T 2y4o_A          168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL  246 (443)
T ss_dssp             CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence            88889999999999999999999999999998765433333  47999999999999999999999988 7999999999


Q ss_pred             ccCCCc-eeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhhhhccccCceEEEecC-Cc
Q 014435          315 TETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN-DH  392 (424)
Q Consensus       315 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~-g~  392 (424)
                      ||+++. +....+.    .....+.+.++++++|+|++++++++.|+.|||+++|..-...-.+||+|||+|+++++ |+
T Consensus       247 TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~~~p~~~y~TGDl~~~~~~cG~  322 (443)
T 2y4o_A          247 SEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTAR  322 (443)
T ss_dssp             TTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCSSEEEEEEECEECCSSS
T ss_pred             hhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCcccChhheeecCCEEEEcCCCCC
Confidence            997543 3333221    11125556789999999987899999999999999985422112679999999999998 85


Q ss_pred             -------e-----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          393 -------N-----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       393 -------~-----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                             +     | |+++|++|+|.+||++|.+||+|.+++|++
T Consensus       323 ~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~  367 (443)
T 2y4o_A          323 AMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQIT  367 (443)
T ss_dssp             SSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred             CccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEE
Confidence                   2     3 899999999999999999999999888763

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.98  E-value=3e-32  Score=253.55  Aligned_cols=222  Identities=16%  Similarity=0.089  Sum_probs=177.5

Q ss_pred             CCCCCEEEEecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhh-ccCCCcEEEEecch-HHHHHHHHHHHHHhhcCceEEe
Q 014435          159 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVVS  236 (424)
Q Consensus       159 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~  236 (424)
                      ..++++++++|||||||.||+|.++|+++............. ....++++++.+|+ +|..|+. ..+.++..|+ +++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EEE
Confidence            467889999999999999999999999998887654322222 22344899999999 9999986 4555588888 566


Q ss_pred             cCCCCHH-----------------------HHHHHHHHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCH
Q 014435          237 MGKFDIE-----------------------MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  293 (424)
Q Consensus       237 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~  293 (424)
                      +..+++.                       .+++.++++++|++.++|+++..|++.......+++++|.+++||+++++
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~  245 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL  245 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence            6667777                       88889999999999999999999998755444557899999999999999


Q ss_pred             HHHHHHH-HhCCCCeEEecccCccCCCceeecCCCCCccCCCccccc------cCCcEEEEeeCCCCccCCCCCceeEEE
Q 014435          294 ELMEDCQ-KNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL------VAGVEAQIVSVDTLKPLPPNQLGEIWV  366 (424)
Q Consensus       294 ~~~~~~~-~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gel~v  366 (424)
                      ++.++++ +.||++++++.||+||+++++... +.      .++|+|      .++++++|+|++++++++.|+.|||++
T Consensus       246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~-~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~v  318 (369)
T 3hgu_A          246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL-LI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIV  318 (369)
T ss_dssp             HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC-CB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEE
T ss_pred             HHHHHHHHHhCCCcEEEcccCchhhhcceecc-cc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEE
Confidence            9999999 899889999999999988655332 11      157888      999999999977999999999999999


Q ss_pred             ecCCcchhhhhccccCceEEEecC
Q 014435          367 RGPNVTPVFELTVNCNLFSYFRSN  390 (424)
Q Consensus       367 ~~~~~~~gy~~~~~TgD~g~~~~~  390 (424)
                      ++..-... -.+|+|||++.+.+.
T Consensus       319 t~l~~~~~-l~ry~tgD~~~~~~~  341 (369)
T 3hgu_A          319 THLSPWAF-YPRVAERDTAIRLPG  341 (369)
T ss_dssp             EEEETTEE-EEEEEEEEEEEEECC
T ss_pred             EEcCcccc-cccccCCceEEEecC
Confidence            98532221 356899999988653

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.36  E-value=1.4e-06  Score=83.36  Aligned_cols=125  Identities=12%  Similarity=0.033  Sum_probs=77.7

Q ss_pred             CCCee---EEEecCCCCCHHHHHHHHHhCCCCeEE-ecccCccCCCceeecCCCCCccCCCcccc-ccCC-cEEEEeeCC
Q 014435          278 ISSLK---LVGSGAAPLGKELMEDCQKNIPGATIF-QGYGMTETCAPISLENPLVGVRRSGSAGT-LVAG-VEAQIVSVD  351 (424)
Q Consensus       278 ~~~lr---~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~  351 (424)
                      +++++   .+..||.   ..-...++..+++.+++ ..|++||+ .+.....+.   ..+...+. .+++ +-.+.++.+
T Consensus       296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~---~~~~~~~~~L~~~~~ffEFip~~  368 (581)
T 4eql_A          296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPL---CKPEDVSYTFMPNMSYFEFIPMD  368 (581)
T ss_dssp             STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTT---SCGGGCCEEECTTSSEEEEEECS
T ss_pred             CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCC---CCcccCceeecCCcEEEEEEecc
Confidence            57744   4555662   44445566656677887 89999994 333322221   11112222 2222 344555532


Q ss_pred             C--------CccCCCCCceeEEEecCCcchhhhhccccCceEEEec--CC--ce-------e-eEeeeeeeChhhHHHHH
Q 014435          352 T--------LKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS--ND--HN-------D-FFCKLFQVAPAELEGLL  411 (424)
Q Consensus       352 ~--------~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~--~g--~~-------d-i~~~G~~v~~~~iE~~l  411 (424)
                      +        ...+..|+.+||+++...   | --+|++||+.++..  +.  ++       | +++.|+++++.+||++|
T Consensus       369 ~~~~~~~v~l~eVe~G~~YelViTt~~---G-L~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al  444 (581)
T 4eql_A          369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---G-LYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAV  444 (581)
T ss_dssp             TTCCSSCEEGGGCCTTCEEEEEEECSS---S-CCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHH
T ss_pred             ccCCCcEeCHHHcCCCceEEEEEeecc---c-eeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHH
Confidence            2        134579999999999864   2 23579999999875  33  22       3 88899999999999999


Q ss_pred             hc
Q 014435          412 VS  413 (424)
Q Consensus       412 ~~  413 (424)
                      .+
T Consensus       445 ~~  446 (581)
T 4eql_A          445 SQ  446 (581)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.25  E-value=4.8e-06  Score=79.95  Aligned_cols=125  Identities=11%  Similarity=0.030  Sum_probs=76.5

Q ss_pred             CCCeeE---EEecCCCCCHHHHHHHHHhCCCCeEE-ecccCccCCCceeecCCCCCccCCCcccc-ccCC-cEEEEeeCC
Q 014435          278 ISSLKL---VGSGAAPLGKELMEDCQKNIPGATIF-QGYGMTETCAPISLENPLVGVRRSGSAGT-LVAG-VEAQIVSVD  351 (424)
Q Consensus       278 ~~~lr~---~~~~g~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~  351 (424)
                      ++++|+   +..||.   ......++..+++..++ ..|++||+ .+.....+.   ..++..+. .+|+ +-.+.++.+
T Consensus       301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~---~~p~~~~~~L~p~~~ffEFIP~~  373 (609)
T 4b2g_A          301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPM---SKPSEVSYTIMPNMAYFEFLPHE  373 (609)
T ss_dssp             STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCTT---SCGGGCCEEECTTSCEEEEEEGG
T ss_pred             CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeeecCCC---CCcccCceeecCCcEEEEEEecc
Confidence            577554   445552   34445555555667777 89999994 333322221   11111222 2223 334555432


Q ss_pred             C---------------CccCCCCCceeEEEecCCcchhhhhccccCceEEEec--C--Cce-------e-eEeeeeeeCh
Q 014435          352 T---------------LKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRS--N--DHN-------D-FFCKLFQVAP  404 (424)
Q Consensus       352 ~---------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~--~--g~~-------d-i~~~G~~v~~  404 (424)
                      +               ...+..|+.+||+++...   | --.|++||+.+++.  +  .++       | +++.|+++++
T Consensus       374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---G-L~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~  449 (609)
T 4b2g_A          374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---G-LYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDE  449 (609)
T ss_dssp             GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---S-CCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred             ccccccccCCCCccccHhHcCCCCeEEEehhhhh---h-hhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCH
Confidence            2               135689999999998753   2 13479999999874  3  223       3 8889999999


Q ss_pred             hhHHHHHhc
Q 014435          405 AELEGLLVS  413 (424)
Q Consensus       405 ~~iE~~l~~  413 (424)
                      .+||+++.+
T Consensus       450 ~~v~~av~~  458 (609)
T 4b2g_A          450 AELQKAVDN  458 (609)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999963

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.03  E-value=1.6e-05  Score=75.93  Aligned_cols=126  Identities=10%  Similarity=0.003  Sum_probs=76.0

Q ss_pred             CCCeeEE--EecCCCCCHHHHHHHHHhCCCCeEE-ecccCccCCCceeecCCCCCccCCCcccc-ccCC-cEEEEeeCCC
Q 014435          278 ISSLKLV--GSGAAPLGKELMEDCQKNIPGATIF-QGYGMTETCAPISLENPLVGVRRSGSAGT-LVAG-VEAQIVSVDT  352 (424)
Q Consensus       278 ~~~lr~~--~~~g~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~  352 (424)
                      ++++|++  +.+|. + ......++..+++.+++ ..|++||+ .+.....+.   ..++..+. .+|+ +-.+.++.++
T Consensus       301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~---~~~~~~~~~L~p~~~ffEFiP~~~  374 (581)
T 4epl_A          301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPR---LSPEEATFAVIPNLGYFEFLPVSE  374 (581)
T ss_dssp             CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTT---SCTTTCCEEECTTSCEEEEEEC--
T ss_pred             CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCC---CCccccceeecCCcEEEEEEeccc
Confidence            6778643  34442 2 33445566555677777 89999994 333322222   11112222 2233 2334443221


Q ss_pred             ----------CccCCCCCceeEEEecCCcchhhhhccccCceEEEecC--C--ce-------e-eEeeeeeeChhhHHHH
Q 014435          353 ----------LKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN--D--HN-------D-FFCKLFQVAPAELEGL  410 (424)
Q Consensus       353 ----------~~~~~~g~~Gel~v~~~~~~~gy~~~~~TgD~g~~~~~--g--~~-------d-i~~~G~~v~~~~iE~~  410 (424)
                                ...+..|+.+||+++...   | --.|++||+.++..-  .  ++       + +++.|+++++.+||++
T Consensus       375 ~~~~~~~~v~l~eve~G~~YelviTt~~---G-L~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~a  450 (581)
T 4epl_A          375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---G-LYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLS  450 (581)
T ss_dssp             -----CCCEEGGGCCTTCEEEEEEESTT---S-CSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHH
T ss_pred             ccCCCCceeeHHHcCCCCeEEEEEeecc---c-eeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHH
Confidence                      145689999999999864   2 235799999998742  1  22       3 8889999999999999


Q ss_pred             Hhc
Q 014435          411 LVS  413 (424)
Q Consensus       411 l~~  413 (424)
                      +.+
T Consensus       451 l~~  453 (581)
T 4epl_A          451 VES  453 (581)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            964

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=94.22  E-value=0.26  Score=45.89  Aligned_cols=86  Identities=13%  Similarity=0.100  Sum_probs=70.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCc--cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|.+.+...+..++..+...|+.++|++....|.+.  ..+...++++..|+.+++.+.. +.+.+...+++.++++++.
T Consensus       110 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~  188 (437)
T 2y27_A          110 YTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIMV  188 (437)
T ss_dssp             ECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEEE
Confidence            699999888888888787889999999999888643  2344578889999999987654 7889999999999999999


Q ss_pred             cccchHHHh
Q 014435          103 VPELWDKVK  111 (424)
Q Consensus       103 ~~~~~~~~~  111 (424)
                      .+..+..+.
T Consensus       189 ~Ps~~~~l~  197 (437)
T 2y27_A          189 TPSYMLSIA  197 (437)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            887665543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.97  E-value=0.28  Score=45.76  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=70.4

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCc--cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|.+.+...+..++..+...|+.++|++....|-+.  ..+...++++..|+.+++.+.. ..+.+...+++.++++++.
T Consensus       112 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~  190 (443)
T 2y4o_A          112 YTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIILV  190 (443)
T ss_dssp             ECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEEE
Confidence            699999888888888887889999999999888643  2345678889999999988664 7888999999999999999


Q ss_pred             cccchHHHh
Q 014435          103 VPELWDKVK  111 (424)
Q Consensus       103 ~~~~~~~~~  111 (424)
                      .+..+..+.
T Consensus       191 ~Ps~~~~l~  199 (443)
T 2y4o_A          191 TPSYMLNLI  199 (443)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            887665543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.85  E-value=0.27  Score=45.77  Aligned_cols=86  Identities=16%  Similarity=0.079  Sum_probs=70.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|.+.+...+..++..+...|+.++|++....|-+  ...+..+++++..|+.+++.++. .++.+...+++.++++++.
T Consensus       106 ~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~~~  184 (436)
T 3qov_A          106 HSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTALHA  184 (436)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEEEC
T ss_pred             ECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEEEE
Confidence            79999998888888888888999999999988754  33445678889999999987654 7788999999999999999


Q ss_pred             cccchHHHh
Q 014435          103 VPELWDKVK  111 (424)
Q Consensus       103 ~~~~~~~~~  111 (424)
                      .+..+..+.
T Consensus       185 ~P~~~~~l~  193 (436)
T 3qov_A          185 IPSYAIRLA  193 (436)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            887665543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=85.61  E-value=1.8  Score=39.11  Aligned_cols=86  Identities=9%  Similarity=0.144  Sum_probs=63.4

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcc--HHHHHHHHHHhCCeEecCCCCCCHH----------------
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVS----------------   86 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~----------------   86 (424)
                      +|.+.+...+..++..+...|+.++|++....|-+..  -+...++++..|+.+++.+  ..+.                
T Consensus       111 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~~  188 (369)
T 3hgu_A          111 AYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVRK  188 (369)
T ss_dssp             ECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHHH
T ss_pred             ECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhHH
Confidence            6888888888777777778899999999999887333  2344555688999655543  3444                


Q ss_pred             -------HHHHHHHhcCCeEEEEcccchHHHhc
Q 014435           87 -------ELSKQVKDSNPKLVITVPELWDKVKD  112 (424)
Q Consensus        87 -------~i~~~l~~~~~~~ii~~~~~~~~~~~  112 (424)
                             .+...+++.++.+++..+.....+..
T Consensus       189 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  221 (369)
T 3hgu_A          189 YTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK  221 (369)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence                   66678999999999998877665543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=82.47  E-value=5.8  Score=37.40  Aligned_cols=84  Identities=13%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccH-HHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEEc
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV  103 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~  103 (424)
                      +|.+.+...+.....   ..++.++|++...+|-...+ +..+++++..|+..+..+ ..+++.+...+++.+++++...
T Consensus       183 ~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~  258 (501)
T 3ipl_A          183 QTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLV  258 (501)
T ss_dssp             EEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEEC
T ss_pred             EeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEch
Confidence            688888776655543   45889999999888875433 334677888999988875 4688999999999999999998


Q ss_pred             ccchHHHhc
Q 014435          104 PELWDKVKD  112 (424)
Q Consensus       104 ~~~~~~~~~  112 (424)
                      +..+..+..
T Consensus       259 P~~~~~l~~  267 (501)
T 3ipl_A          259 PQTLNWLMQ  267 (501)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            877665543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=82.03  E-value=3.5  Score=39.52  Aligned_cols=86  Identities=15%  Similarity=0.133  Sum_probs=64.7

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHH--HHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~--~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +|.+.+...+......+...++.++|++....|-...+-  ..+++++ .|+..+..+ ..+++.+...+++.++++++.
T Consensus       212 ~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~  289 (548)
T 2d1s_A          212 LTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVIL  289 (548)
T ss_dssp             EEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEE
T ss_pred             ecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEe
Confidence            788888776655544333357889999888888764443  3356777 999988775 568899999999999999999


Q ss_pred             cccchHHHhc
Q 014435          103 VPELWDKVKD  112 (424)
Q Consensus       103 ~~~~~~~~~~  112 (424)
                      .+..+..+..
T Consensus       290 ~P~~~~~l~~  299 (548)
T 2d1s_A          290 VPTLFAILNK  299 (548)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            8887766543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=80.66  E-value=8.1  Score=36.84  Aligned_cols=82  Identities=13%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHH---HHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           25 PSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        25 ~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      +|.+.+...+.....   ..++.++|++....|-+..+-.   .+++++..|+..+..+ ...++.+...+++.+++++.
T Consensus       202 ~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~  277 (539)
T 1mdb_A          202 RTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITA  277 (539)
T ss_dssp             EEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEE
T ss_pred             EehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEE
Confidence            688888776655444   3478899998888887654433   4788899999998765 46888999999999999999


Q ss_pred             EcccchHHH
Q 014435          102 TVPELWDKV  110 (424)
Q Consensus       102 ~~~~~~~~~  110 (424)
                      ..+..+..+
T Consensus       278 ~~P~~~~~l  286 (539)
T 1mdb_A          278 LVPPLAMVW  286 (539)
T ss_dssp             ECHHHHHHH
T ss_pred             ccHHHHHHH
Confidence            988766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-76
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-59
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-58
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	9e-55
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-46
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-40
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	5e-37

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  247 bits (632), Expect = 2e-76
 Identities = 92/442 (20%), Positives = 165/442 (37%), Gaps = 46/442 (10%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+      V + +++   LGI K DVV I+ P      +  L    IGA+ S     ++ 
Sbjct: 105 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 164

Query: 86  SELSKQVKDSNPKLVITVPELWDKV-----KDLNLPAVLLGSKDKVSSSGLISRSSKIVS 140
             ++  + DS+ +LVIT  E          K     A+   +   V    ++ R+   + 
Sbjct: 165 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 224

Query: 141 FHDLIEL------SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI 194
           + +  +L        +  +    ++   D   +LY+SG+TG  KGV+ T   ++  +   
Sbjct: 225 WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATT 284

Query: 195 SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIEMALRAIE 250
             +       D +  C   +  V G S +LY  L  G   +               + ++
Sbjct: 285 FKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 343

Query: 251 KYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI--PGA 306
           K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  E   K I     
Sbjct: 344 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403

Query: 307 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 366
            +   +  TET   +    P     ++GSA     GV+  +V  +   P      G + +
Sbjct: 404 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVI 462

Query: 367 RGPNVTPVFELTVNCNLFS---------YFRSND--------------HNDFFCKL--FQ 401
                     L  +   F           + S D                D    +   +
Sbjct: 463 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR 522

Query: 402 VAPAELEGLLVSHPEILDAVVI 423
           +  AE+E  LV+HP+I +A V+
Sbjct: 523 LGTAEIESALVAHPKIAEAAVV 544

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  200 bits (509), Expect = 2e-59
 Identities = 108/424 (25%), Positives = 186/424 (43%), Gaps = 29/424 (6%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           +++ +  + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y  
Sbjct: 49  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 108

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF--HD 143
            EL   +  S P +V    +   K+ ++     ++     + S         + +F    
Sbjct: 109 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 168

Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
           L         +P+   +    A ++ SSG+TG+ KGV L H+                  
Sbjct: 169 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 228

Query: 204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 263
           +    +  +  FH           L  G  VV M +F+ E+ LR+++ Y++    +VP +
Sbjct: 229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTL 288

Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
               AK++L+ K+D+S+L  + SG APL KE+ E   K      I QGYG+TET + I +
Sbjct: 289 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 348

Query: 324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP---------- 373
                G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +            
Sbjct: 349 TPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATN 406

Query: 374 -------------VFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDA 420
                        +     + + F   R         K +QVAPAELE +L+ HP I DA
Sbjct: 407 ALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS--LIKYKGYQVAPAELESILLQHPNIFDA 464

Query: 421 VVIP 424
            V  
Sbjct: 465 GVAG 468

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  199 bits (507), Expect = 2e-58
 Identities = 82/444 (18%), Positives = 166/444 (37%), Gaps = 47/444 (10%)

Query: 26  SFSMFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 84
           ++      V +V+    + +G+ K D V ++ P      I  L +  IGAI S     ++
Sbjct: 92  TYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 151

Query: 85  VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS----------SGLISR 134
            + L  ++ D + K+VIT  E     K +    ++  +  +             +     
Sbjct: 152 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 211

Query: 135 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI 194
                      E     T  P   V   D   LLY+SG+TG  KGV  +   ++  +L+ 
Sbjct: 212 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT 271

Query: 195 SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIE 250
             +     + D V      +  + G + ++Y  L  G   +         +       I+
Sbjct: 272 MRYTFDTHQED-VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIID 330

Query: 251 KYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GA 306
           +++VT ++V P  +  L +  +S +    + SL+ +GS   P+  E+ E   + I     
Sbjct: 331 EHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI 390

Query: 307 TIFQGYGMTETCAPISLENPL-VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ-LGEI 364
            I   Y  TE+ + +       V   + GSA     G++A ++  +T + L  +   G +
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVL 450

Query: 365 WVRGPNVTPVFELTVNCNLFS---------YFRSND--------------HNDFFCKL-- 399
            V+    +    +  N + +          Y+ + D                D    +  
Sbjct: 451 AVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSG 510

Query: 400 FQVAPAELEGLLVSHPEILDAVVI 423
            +++ AE+E  ++  P + +  V+
Sbjct: 511 HRLSTAEIEAAIIEDPIVAECAVV 534

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  188 bits (477), Expect = 9e-55
 Identities = 89/450 (19%), Positives = 168/450 (37%), Gaps = 54/450 (12%)

Query: 6   YGRDGIYRSLRPPLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 65
               G               +++       ++    R LG+   D V     N       
Sbjct: 32  RLHTGEVHRT----------TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEA 81

Query: 66  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDK 125
           +  V  +GA+  TANP  +  E++  +  +  K+++  P L   V+ +         + +
Sbjct: 82  YFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI---------RGE 132

Query: 126 VSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 185
           + +        +      L        +   V V +  A  + Y++GTTG+ KGV+ +H+
Sbjct: 133 LKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHR 192

Query: 186 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA 245
             +  SL  S           VVL V+PMFHV    +     L     V+   + D    
Sbjct: 193 ALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASL 252

Query: 246 LRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 305
           +   +   VT    VP + LALA         + +L+ +  G +   + L+   ++   G
Sbjct: 253 VELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER--MG 310

Query: 306 ATIFQGYGMTETC---------APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL 356
             + QGYG+TET          + +   +    +      G  +  V  ++   +  +P+
Sbjct: 311 VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPV 369

Query: 357 PPN--QLGEIWVRGPNVTPVF----ELTVNCNLFS-YFRSND--------------HNDF 395
           P +   LGE+ ++GP +T  +    E T +      +FR+ D                  
Sbjct: 370 PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKD 429

Query: 396 FCKL--FQVAPAELEGLLVSHPEILDAVVI 423
             K     ++  +LE  L+ HP++ +A V+
Sbjct: 430 LIKSGGEWISSVDLENALMGHPKVKEAAVV 459

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  164 bits (414), Expect = 8e-46
 Identities = 89/421 (21%), Positives = 160/421 (38%), Gaps = 32/421 (7%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           S+    +   +++  F+ LGI +KD V++  PN   F      +  +GA+   A P +  
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
           SE++   + +     I      D     +  ++    + K+ +   I  + +   F  L 
Sbjct: 112 SEITYFCEFAEAAAYII----PDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
           +L      +P+V    +D A L  S G+TG+SK +  TH ++I +         L     
Sbjct: 168 DLHTEPVKLPEVK--SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--S 223

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQ-KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
            V L  LPM H + LS      +   G  VV       + A   IE+ +VT+  +VPP+ 
Sbjct: 224 TVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLA 283

Query: 265 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 324
           +     +  R+ D+SSL+++  G A    E     +    G T+ Q +GM E     +  
Sbjct: 284 MVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV-FGCTLQQVFGMAEGLVNYTR- 341

Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV----------TPV 374
                     + G  ++  +   V  D  + + P + G +  RGP               
Sbjct: 342 LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAA 401

Query: 375 FELTVNCNLFSYFRSNDHNDFFCKL-----------FQVAPAELEGLLVSHPEILDAVVI 423
                             + +                +VA  E+E  L++HP + DA ++
Sbjct: 402 SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMV 461

Query: 424 P 424
            
Sbjct: 462 S 462

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  148 bits (375), Expect = 1e-40
 Identities = 70/429 (16%), Positives = 134/429 (31%), Gaps = 62/429 (14%)

Query: 26  SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
           ++        +++  F   GI K  +V I    SI   I  L V+  G      +  Y  
Sbjct: 50  TYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPK 109

Query: 86  SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 145
             +   + DS  ++++T   L   + ++                         V   +  
Sbjct: 110 ERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQ--------------------VEIFEED 149

Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
            +         V  K TD A ++Y+SGTTG  KG +L HK      +             
Sbjct: 150 TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN--VTEK 207

Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--FDIEMALRAIEKYRVTVWWVVPPI 263
             +     +     +  +    L   +  + +     D     + I +  +TV  + P  
Sbjct: 208 DRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTY 267

Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS- 322
           +        +    I S++ + +  +     L+   +      T    YG TET    + 
Sbjct: 268 V------VHLDPERILSIQTLITAGSATSPSLVNKWK---EKVTYINAYGPTETTICATT 318

Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELT 378
                  +  S   G  +   +  IV  + L+     + GE+ + G  +   +    ELT
Sbjct: 319 WVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELT 377

Query: 379 VNCNLFSYFRSNDH---------------------NDFFCKL--FQVAPAELEGLLVSHP 415
               + + F   +                       D   K+   +V   E+E +L+ H 
Sbjct: 378 SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHM 437

Query: 416 EILDAVVIP 424
            I +  V  
Sbjct: 438 YISETAVSV 446

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  139 bits (349), Expect = 5e-37
 Identities = 85/435 (19%), Positives = 165/435 (37%), Gaps = 44/435 (10%)

Query: 16  RPPLVLPSDP---SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 72
              L +P+     + +  ++ V  V+      G+  +  V + APNS    I  L +  +
Sbjct: 18  HCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77

Query: 73  GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 132
           GA+ +  NP    +EL++ +K       +         + +       GS  ++   G +
Sbjct: 78  GAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-----RQVADAIFQSGSGARIIFLGDL 132

Query: 133 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 192
            R  +  S+   IE         D   +    A + Y+SGTTG+ K  I+  +   +  L
Sbjct: 133 VRDGEPYSYGPPIE---------DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL 183

Query: 193 MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY 252
            +S    L     +VVL ++P++HV G   +L   L      V + +F    AL+ +++ 
Sbjct: 184 FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQE 243

Query: 253 RVTVW--WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 310
           +VT           LA A         + SL+ V    A +   ++E   +++       
Sbjct: 244 QVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVN 302

Query: 311 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN 370
            YG TE    + +  P  G   +    + V  V    +     + +   + GE+ V   +
Sbjct: 303 IYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIV---RIGGGVDEIVANGEEGELIVAASD 359

Query: 371 VTPVF-----ELTVNCNLFSYFRSND----HNDFFCKL------------FQVAPAELEG 409
              V      + T       ++R++D      +   ++              + P+E+E 
Sbjct: 360 SAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIER 419

Query: 410 LLVSHPEILDAVVIP 424
           +L + P + + VVI 
Sbjct: 420 VLGTAPGVTEVVVIG 434

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=4e-64  Score=497.36  Aligned_cols=394  Identities=22%  Similarity=0.268  Sum_probs=320.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      ++|||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++++++..++++++++++|+
T Consensus       102 ~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~  181 (643)
T d1pg4a_         102 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVIT  181 (643)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHh-------------c---CCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435          103 VPELWDKVK-------------D---LNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus       103 ~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      +++......             .   .....+++.........   ..........+......  ........+++|+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~  256 (643)
T d1pg4a_         182 ADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID---WQEGRDLWWRDLIEKAS--PEHQPEAMNAEDPLF  256 (643)
T ss_dssp             ESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---CCBTTEEEHHHHHTTSC--SCCCCCCEETTSEEE
T ss_pred             cchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc---cccccchhhhhhhcccC--cccCCCCCCCCCeEE
Confidence            875432111             1   01122222222111000   00111222233332222  333445567899999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHHHHH-HhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CC
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FD  241 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~  241 (424)
                      |+|||||||.||+|+++|++++...... ......  ..++++++.+|++|.+|+...++.+|..|+++++.+.    ++
T Consensus       257 IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~  334 (643)
T d1pg4a_         257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY--HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT  334 (643)
T ss_dssp             EEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC--CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS
T ss_pred             EEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCC
Confidence            9999999999999999999976554332 222333  3449999999999999987678889999999998753    48


Q ss_pred             HHHHHHHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCC--CCeEEecccCccC
Q 014435          242 IEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GATIFQGYGMTET  317 (424)
Q Consensus       242 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~yG~tE~  317 (424)
                      +..+++.++++++|+++++|++++.|++....  ...++++||.++++|+++++++++++.+.++  ++.+++.||+||+
T Consensus       335 ~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~  414 (643)
T d1pg4a_         335 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET  414 (643)
T ss_dssp             TTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred             HHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhc
Confidence            89999999999999999999999999887543  4557899999999999999999999999885  5789999999999


Q ss_pred             CCceeecCCCCCccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecC--Ccchhh---------------hhccc
Q 014435          318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--NVTPVF---------------ELTVN  380 (424)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy---------------~~~~~  380 (424)
                      ++.++...+.....+.+++|+|++|++++|+| ++|++++.|+.|||+++|+  .++.+|               ++||+
T Consensus       415 g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~  493 (643)
T d1pg4a_         415 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF  493 (643)
T ss_dssp             SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEE
T ss_pred             cceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEE
Confidence            88777665554467789999999999999999 6899999999999999995  455555               68999


Q ss_pred             cCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          381 CNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       381 TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      |||+|++++||.+       | |+++|++|+|.|||++|.+||+|.||+|||
T Consensus       494 TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg  545 (643)
T d1pg4a_         494 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG  545 (643)
T ss_dssp             EEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEE
T ss_pred             cCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence            9999999999988       3 999999999999999999999999999985

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.3e-60  Score=466.11  Aligned_cols=394  Identities=28%  Similarity=0.430  Sum_probs=323.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++
T Consensus        44 ~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~v  123 (541)
T d1lcia_          44 IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV  123 (541)
T ss_dssp             TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred             CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcC----CCCeEEEecCCCccccccccCCCcccchhhhhhcc-----CCCCCCCCCCCCCCCEEEEecCC
Q 014435          101 ITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS-----GSVTDIPDVSVKQTDAAALLYSS  171 (424)
Q Consensus       101 i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~TS  171 (424)
                      |++++....+.++    .....++.....       .....+..+.+.....     ......+.....++++++++|||
T Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  196 (541)
T d1lcia_         124 FVSKKGLQKILNVQKKLPIIQKIIIMDSK-------TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSS  196 (541)
T ss_dssp             EECGGGHHHHHHHHHHCTTCCEEEETTCS-------SCBTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-
T ss_pred             eeeccccccchhccccccccceeeeecCC-------ccccccchhhhhhhhhccccccccccCccccCCCCceEEEEeec
Confidence            9999877665443    222222221111       1112222222222211     11122334455678999999999


Q ss_pred             CCCCCcchhhhcHHHHHHHHHHHHhhhhh-ccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHH
Q 014435          172 GTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIE  250 (424)
Q Consensus       172 GtTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~  250 (424)
                      ||||.||+|+++|+++............. ....++++++.+|++|..+.. ..+..+..++..+.....+.......+.
T Consensus       197 GTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (541)
T d1lcia_         197 GSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQ  275 (541)
T ss_dssp             ----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccc-ccccccccccccccccccccchhHHHHh
Confidence            99999999999999988765554333322 223458999999999999985 6667777788888888889999999999


Q ss_pred             HccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCc
Q 014435          251 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV  330 (424)
Q Consensus       251 ~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  330 (424)
                      .+++|.+..+|.++..+.+.......+++++|.+++||+++++...+++.+.++...+++.||+||+++.++.....  .
T Consensus       276 ~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--~  353 (541)
T d1lcia_         276 DYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--D  353 (541)
T ss_dssp             HTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---
T ss_pred             hhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcc--c
Confidence            99999999999999999998888888899999999999999999999999999767899999999999888776555  5


Q ss_pred             cCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce----
Q 014435          331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN----  393 (424)
Q Consensus       331 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~----  393 (424)
                      ...+++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||             ++||+|||+|+++++|++    
T Consensus       354 ~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~G  433 (541)
T d1lcia_         354 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVD  433 (541)
T ss_dssp             --CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-
T ss_pred             CCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEee
Confidence            677899999999999999988999999999999999999999999             679999999999999987    


Q ss_pred             ---e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ---D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ---d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                         | |+++|++|+|.+||++|.+||+|.||+|+|
T Consensus       434 R~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~  468 (541)
T d1lcia_         434 RLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAG  468 (541)
T ss_dssp             ----CEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred             eecCEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence               3 999999999999999999999999999975

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-59  Score=466.61  Aligned_cols=398  Identities=20%  Similarity=0.248  Sum_probs=314.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~-~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      .++|||+||.++++++|++|+ ++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++
T Consensus        88 ~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~  167 (640)
T d1ry2a_          88 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVV  167 (640)
T ss_dssp             CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred             eeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhcccc
Confidence            357999999999999999997 6799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhcC---------C-----CCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEE
Q 014435          101 ITVPELWDKVKDL---------N-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  166 (424)
Q Consensus       101 i~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (424)
                      +++..........         .     ..............  ................  .........+..++|+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~a~  243 (640)
T d1ry2a_         168 ITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS--VAFHAPRDLDWATEKK--KYKTYYPCTPVDSEDPLF  243 (640)
T ss_dssp             EEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS--CCCCSSSEEEHHHHHT--TSCSCCCCCCEETTSCCE
T ss_pred             ccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc--cccccccccccccccc--ccccccccCCcccccCCE
Confidence            9987543221111         0     11111111110000  0000111111111111  111333445566889999


Q ss_pred             EecCCCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC----CCH
Q 014435          167 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDI  242 (424)
Q Consensus       167 i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~  242 (424)
                      |+|||||||.||+|+++|++++.......... .....++++++.+|++|.+|+...++.+|..|+++++.+.    .++
T Consensus       244 i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~  322 (640)
T d1ry2a_         244 LLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT-FDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNY  322 (640)
T ss_dssp             EEEECCSSSSCEEEEECSHHHHHHHHHHHHHH-SCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCT
T ss_pred             EEECCCCCCCCcceeeccccHHHHHHHHHHhh-cCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCH
Confidence            99999999999999999999877644433222 2234459999999999999987778889999998888754    378


Q ss_pred             HHHHHHHHHccceEEEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCC--CCeEEecccCccCC
Q 014435          243 EMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIP--GATIFQGYGMTETC  318 (424)
Q Consensus       243 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~yG~tE~~  318 (424)
                      ..+++.++++++|++.++|+++..|.+....  ...++++||.+++||+++++++.+++.+.++  ...+++.||+||++
T Consensus       323 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~  402 (640)
T d1ry2a_         323 SRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG  402 (640)
T ss_dssp             THHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred             HHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccc
Confidence            9999999999999999999999999876543  4567899999999999999999999999986  35699999999998


Q ss_pred             CceeecCCCC-CccCCCccccccCCcEEEEeeCCCCccC-CCCCceeEEEec--CCcchhh---------------hhcc
Q 014435          319 APISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPL-PPNQLGEIWVRG--PNVTPVF---------------ELTV  379 (424)
Q Consensus       319 ~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~-~~g~~Gel~v~~--~~~~~gy---------------~~~~  379 (424)
                      .......... ...+.+++|+|+++++++|+|+++++.+ +.+..|||++++  |.++.||               ++||
T Consensus       403 ~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~  482 (640)
T d1ry2a_         403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY  482 (640)
T ss_dssp             SCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSE
T ss_pred             cccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeE
Confidence            7666544332 2567789999999999999997666554 556779999998  5778887               4899


Q ss_pred             ccCceEEEecCCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          380 NCNLFSYFRSNDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       380 ~TgD~g~~~~~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|||+|++|+||.+       | |+++|++|+|.|||++|.+||.|.||+|+|
T Consensus       483 ~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg  535 (640)
T d1ry2a_         483 FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG  535 (640)
T ss_dssp             EEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred             EcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence            99999999999987       3 999999999999999999999999999986

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.3e-60  Score=459.31  Aligned_cols=385  Identities=22%  Similarity=0.320  Sum_probs=309.7

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEEE
Q 014435           23 SDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  102 (424)
Q Consensus        23 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  102 (424)
                      +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++++
T Consensus        39 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~  118 (534)
T d1v25a_          39 HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLF  118 (534)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccc
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHhcCCC-----CeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCCCCCCc
Q 014435          103 VPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS  177 (424)
Q Consensus       103 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~p  177 (424)
                      +............     ...+......         ........   ....  .........++++++++|||||||.|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~P  184 (534)
T d1v25a_         119 DPNLLPLVEAIRGELKTVQHFVVMDEKA---------PEGYLAYE---EALG--EEADPVRVPERAACGMAYTTGTTGLP  184 (534)
T ss_dssp             CGGGHHHHHHHGGGCSSCCEEEESSSCC---------CTTCEEHH---HHCC--SCCCCCCCCTTSEEEEEEECSSSSSC
T ss_pred             cchhhhhHHHHhhcccccceeEEeeccc---------cccccccc---cccc--ccccccccccCCcEEEEEecCCCCCc
Confidence            9887776554431     1222221110         00011111   0011  22334455688999999999999999


Q ss_pred             chhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceEE
Q 014435          178 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW  257 (424)
Q Consensus       178 K~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~  257 (424)
                      |+|.++|.++..................+++++.+|++|.+++...+...+..|.++...+.+++..+...++++++|.+
T Consensus       185 Kgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~  264 (534)
T d1v25a_         185 KGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT  264 (534)
T ss_dssp             EEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEE
T ss_pred             cccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhhhcccccc
Confidence            99999999998776555555555445568999999999999997666655555555555566899999999999999999


Q ss_pred             EechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC--------
Q 014435          258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG--------  329 (424)
Q Consensus       258 ~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~--------  329 (424)
                      .++|.++..+.........++++||.+++||++++++..+++++.  +.++++.||+||++.++........        
T Consensus       265 ~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~  342 (534)
T d1v25a_         265 AGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEE  342 (534)
T ss_dssp             EECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHH
T ss_pred             ccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccc
Confidence            999999999998877777889999999999999999999999876  6899999999999987776433321        


Q ss_pred             -ccCCCccccccCCcEEEEeeCCCCccCCC--CCceeEEEecCCcchhh-------------hhccccCceEEEecCCce
Q 014435          330 -VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN  393 (424)
Q Consensus       330 -~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~  393 (424)
                       ....+++|+|++|++++|+| ++++.++.  |+.|||+++|++++.||             ++||+|||+|++++||++
T Consensus       343 ~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l  421 (534)
T d1v25a_         343 KLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYV  421 (534)
T ss_dssp             HHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCE
T ss_pred             cccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccE
Confidence             12346899999999999999 67887765  67999999999999999             779999999999999987


Q ss_pred             -------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 -------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 -------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                             | ++++|++|+|.+||++|.+||+|+||+|+|
T Consensus       422 ~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~  460 (534)
T d1v25a_         422 EIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA  460 (534)
T ss_dssp             EEEEESSCEEEETTEEEEHHHHHCC----------CEEE
T ss_pred             EEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence                   3 999999999999999999999999999985

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=9.6e-55  Score=421.83  Aligned_cols=378  Identities=18%  Similarity=0.202  Sum_probs=309.6

Q ss_pred             cCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHH
Q 014435           14 SLRPPLV-LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV   92 (424)
Q Consensus        14 ~~~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l   92 (424)
                      |+..|+. ..++|||+||.++++++|++|+++|+++||+|+++++|+++|++++|||+++|++++|+++.++.+++.+++
T Consensus        37 Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l  116 (514)
T d1amua_          37 PNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYIL  116 (514)
T ss_dssp             TTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred             CCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHH
Confidence            4444443 345699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEcccchHHHhcCCCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecCCC
Q 014435           93 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG  172 (424)
Q Consensus        93 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  172 (424)
                      +.+++++++++......+...............                   ...... ......+..++++++++||||
T Consensus       117 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~~~~~~p~~~~d~a~i~~TSG  176 (514)
T d1amua_         117 DDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED-------------------TIKIRE-GTNLHVPSKSTDLAYVIYTSG  176 (514)
T ss_dssp             HHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS-------------------TTTTSC-CSCCCCCCCTTSEEEEEEEC-
T ss_pred             hccCCcEEEEehhhhhhhhhhcccccccccccc-------------------cccccc-cccCCCCCCcccceEEEEccC
Confidence            999999999999888777665443222221110                   000010 122233456789999999999


Q ss_pred             CCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCC---CCHHHHHHHH
Q 014435          173 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAI  249 (424)
Q Consensus       173 tTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i  249 (424)
                      |||.||+|.++|.++..............  .++++++..|++|..++. .++.++..|+++++...   .+.....+.+
T Consensus       177 TTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  253 (514)
T d1amua_         177 TTGNPKGTMLEHKGISNLKVFFENSLNVT--EKDRIGQFASISFDASVW-EMFMALLTGASLYIILKDTINDFVKFEQYI  253 (514)
T ss_dssp             ----CEEEEEESHHHHHHHHHHHHTSCCC--TTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCHHHHTCHHHHHHHH
T ss_pred             CCCCccccccccccccccccccccccccc--ccccccceeccccccccc-cccccccccccccccccccccchhhhhhhh
Confidence            99999999999999998877776665554  449999999999999985 66777888888887753   5678888999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCC-
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV-  328 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-  328 (424)
                      ..+.++.+..+|..+..      ....+++++|.++++|+++++++.+++.+   +..+++.||+||++.+++...... 
T Consensus       254 ~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~  324 (514)
T d1amua_         254 NQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKE  324 (514)
T ss_dssp             HHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS
T ss_pred             hhhhcccccceeeeccc------ccccccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeecccccc
Confidence            99999999999976442      23446889999999999999999888765   578999999999998776544432 


Q ss_pred             CccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------------hhccccCceEEEec
Q 014435          329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------------ELTVNCNLFSYFRS  389 (424)
Q Consensus       329 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------------~~~~~TgD~g~~~~  389 (424)
                      ......+.+.+.++.++.+.| +++++++.|+.|||+|+|++++.||                   ++||+|||+|++|+
T Consensus       325 ~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~  403 (514)
T d1amua_         325 TIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS  403 (514)
T ss_dssp             CCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred             ccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECC
Confidence            244556788999999999999 7999999999999999999999999                   56999999999999


Q ss_pred             CCce-------e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          390 NDHN-------D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       390 ~g~~-------d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                      +|++       | |+.+|++|+|.+||++|.+||+|+||+|+|
T Consensus       404 ~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~  446 (514)
T d1amua_         404 DGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV  446 (514)
T ss_dssp             TSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence            9987       4 889999999999999999999999999985

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=4.8e-54  Score=419.04  Aligned_cols=384  Identities=23%  Similarity=0.266  Sum_probs=316.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEE
Q 014435           21 LPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  100 (424)
Q Consensus        21 ~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~i  100 (424)
                      ..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++
T Consensus        47 ~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~  126 (536)
T d1mdba_          47 GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAY  126 (536)
T ss_dssp             TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEE
T ss_pred             CCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceE
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccchHHHhc---------C-CCCeEEEecCCCccccccccCCCcccchhhhhhccCCCCCCCCCCCCCCCEEEEecC
Q 014435          101 ITVPELWDKVKD---------L-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYS  170 (424)
Q Consensus       101 i~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  170 (424)
                      ++++........         . .........           .......+++...     .........++|+++|+||
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~T  190 (536)
T d1mdba_         127 IIPDAYSGFDYRSLARQVQSKLPTLKNIIVAG-----------EAEEFLPLEDLHT-----EPVKLPEVKSSDVAFLQLS  190 (536)
T ss_dssp             EEESEETTEEHHHHHHHHHHHCTTCCCEEEES-----------CCTTSEEGGGCCC-----CCCCCCCCCTTSEEEEEEC
T ss_pred             eccchhhhhhhhhhhhhhhhccccccceeeee-----------ccccccchhhccc-----CCcCCCccCccchHHhhhc
Confidence            998654332111         0 011111111           1111222222211     2233445678999999999


Q ss_pred             CCCCCCcchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHH-HHHHhhcCceEEecCCCCHHHHHHHH
Q 014435          171 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAI  249 (424)
Q Consensus       171 SGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i  249 (424)
                      |||||.||+|++||+++...+..........  .++++++..|++|.+++... .+..+..|.+++..+.+++..+...+
T Consensus       191 SGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  268 (536)
T d1mdba_         191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD--HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLI  268 (536)
T ss_dssp             CCSSSSCCEEEEEHHHHHHHHHHHHHHHTCC--TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHH
T ss_pred             ccccccceecccccccccccccccccccccc--cccccccccccccccceeeccccccccccccccccCCCCHHHHHHHH
Confidence            9999999999999999999888776666554  44999999999999987543 44555667888888889999999999


Q ss_pred             HHccceEEEechHHHHHHHhccccccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCC
Q 014435          250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  329 (424)
Q Consensus       250 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  329 (424)
                      ++++++.+..+|..+..+..........++++|.+++||+++++...+++.+.+ +......|+.+|.+....... ...
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~  346 (536)
T d1mdba_         269 EREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLD-DPE  346 (536)
T ss_dssp             HHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTT-SCH
T ss_pred             hhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeeeccccccccccccccc-ccc
Confidence            999999999999999998888777777889999999999999999999999999 588888888888665444332 222


Q ss_pred             ccCCCccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcchhh-------------hhccccCceEEEecCCce---
Q 014435          330 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-------------ELTVNCNLFSYFRSNDHN---  393 (424)
Q Consensus       330 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy-------------~~~~~TgD~g~~~~~g~~---  393 (424)
                      ....+++|.|+++....+++.++++.++.++.|||+++|+.++.||             ++||+|||++++++||.+   
T Consensus       347 ~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~  426 (536)
T d1mdba_         347 EIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVE  426 (536)
T ss_dssp             HHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred             ccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecC
Confidence            4566789999876655555548999999999999999999999999             689999999999999987   


Q ss_pred             ----e-eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          394 ----D-FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       394 ----d-i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                          | ++.+|++|+|.+||++|.+||+|++|+|||
T Consensus       427 GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg  462 (536)
T d1mdba_         427 GRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS  462 (536)
T ss_dssp             EEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence                3 899999999999999999999999999985

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.2e-50  Score=391.58  Aligned_cols=380  Identities=21%  Similarity=0.275  Sum_probs=305.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCccHHHHHHHHHHhCCeEecCCCCCCHHHHHHHHHhcCCeEEE
Q 014435           22 PSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  101 (424)
Q Consensus        22 ~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii  101 (424)
                      ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++++|
T Consensus        27 ~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i  106 (503)
T d3cw9a1          27 GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV  106 (503)
T ss_dssp             TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred             CcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccchHHH--hcCCCCeEEEecCCCccccccccCCCcccchhhhhhcc---CCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 014435          102 TVPELWDKV--KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS---GSVTDIPDVSVKQTDAAALLYSSGTTGV  176 (424)
Q Consensus       102 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~  176 (424)
                      ++.......  .......                   .+..+.+.....   ............++++++++|||||||.
T Consensus       107 ~~~~~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  167 (503)
T d3cw9a1         107 IAVGRQVADAIFQSGSGA-------------------RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGL  167 (503)
T ss_dssp             ESSCHHHHHHHHHTTCCC-------------------EEEEHHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSS
T ss_pred             eecchHHHHHHhhhcccc-------------------ccccchhhhhhhcccccCCccccccchhhhhhhhccccccccc
Confidence            987543221  1111111                   111111111111   1112233445678999999999999999


Q ss_pred             cchhhhcHHHHHHHHHHHHhhhhhccCCCcEEEEecchHHHHHHHHHHHHHhhcCceEEecCCCCHHHHHHHHHHccceE
Q 014435          177 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV  256 (424)
Q Consensus       177 pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  256 (424)
                      ||+|.++|.++..................++++..+|+.|..+.....+.+...++.++..+.+++..+...+..++++.
T Consensus       168 pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  247 (503)
T d3cw9a1         168 PKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS  247 (503)
T ss_dssp             CEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCE
T ss_pred             ccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChHHhhhhhhhceeec
Confidence            99999999999888776655555545555899999999998888777888888899999999999999999999999999


Q ss_pred             EEechHHHHHHHhcccc--ccCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCeEEecccCccCCCceeecCCCCCccCCC
Q 014435          257 WWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG  334 (424)
Q Consensus       257 ~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  334 (424)
                      +..+|..+..+......  ....+++||.+++||++++++...++.+.+ +..+.+.||++|++..+......  .....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~~~--~~~~~  324 (503)
T d3cw9a1         248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQPK--TGTEM  324 (503)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEESCS--SSSEE
T ss_pred             cccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccccccccccceeeeecccc--ccccc
Confidence            99999998877654332  344578999999999999999999999998 58899999999988776665544  22333


Q ss_pred             ccccccCCcEEEEeeCCCCccCCCCCceeEEEecCCcc-hhh------------hhccccCceEEEecCCce-------e
Q 014435          335 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT-PVF------------ELTVNCNLFSYFRSNDHN-------D  394 (424)
Q Consensus       335 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~-~gy------------~~~~~TgD~g~~~~~g~~-------d  394 (424)
                      +.+.+.+.....+.+ +.++.++.|+.|++.+.+.... .+|            ++||+|||+|++++||.+       |
T Consensus       325 ~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d  403 (503)
T d3cw9a1         325 APGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDD  403 (503)
T ss_dssp             BCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSC
T ss_pred             cccccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCC
Confidence            334444444444444 7889999999999988765433 333            779999999999999988       3


Q ss_pred             -eEeeeeeeChhhHHHHHhcCCCcccceecC
Q 014435          395 -FFCKLFQVAPAELEGLLVSHPEILDAVVIP  424 (424)
Q Consensus       395 -i~~~G~~v~~~~iE~~l~~~p~V~~a~v~g  424 (424)
                       ++++|++|+|.+||++|.+||+|.||+|+|
T Consensus       404 ~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~  434 (503)
T d3cw9a1         404 MIISGGENIHPSEIERVLGTAPGVTEVVVIG  434 (503)
T ss_dssp             CEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             eEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence             999999999999999999999999999985