Citrus Sinensis ID: 014461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccEEEEEEEEccccccHHHHHHHHHccEEEEEcccccccccccEEEEEcccEEEEEEccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHcccccccccEEEEEEccccccccHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEEEccccccEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccEcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccHHHHHHHHHcccEEEcccccccccccEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccHHHEEEEEccccccHHHHHHHHHHHcccccccccHccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEcccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcc
Coil and Loop (DISEMBL)
MKALRALRtlapfaekpnkprlnplfihrfysaqpqqtdnetendcdsvfdssyfriptiddpqnnnaakkqeptwdekyrertdrivfgeeaqKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGiigapnagkssIINYMVGTKVAAVSRKTNTTTHEVLGVmtkadtqicifdtpglmlnksgyshkdVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERmgkqappkqkrvlcMNKVDLVTKKKDLLKVAEQFkhlpgyerifMTSGLKGAGLKALTQYLMEQAvqrpwsedpltmSEEVMKNISLEVVRERLLDHvhqeipysiehrlidwkdlrdgSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT
Flexible Loop (DISEMBL)
mkalralrtlapfaekpnkprlnPLFIHRFYSAqpqqtdnetenDCDSVFDSSYFRiptiddpqnnnaakkqeptwdekyrertdrivfgeeaqkgklrifQEEEEERKHRALAKALLQAALERQEEEeeevkeedqksvavgiigapnagkssiiNYMVGTKVAAVSrktnttthevlgvmtkadTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIErmgkqappkqkrvlcmNKVDLVTKKKDLLKVAEQfkhlpgyerIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQeipysiehrlidwKDLRDGSLRIEQHlitnklsqrkilvgkngskigrigvEANEelrsifkrdvhlilqvrlkt
Low Complexity Region (SEG)
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEerkhralakallqaalerqeeeeeevkeedqkSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNkvdlvtkkkdllkvAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT
Disordered region (IsUnstruct)
***********************PLFIHRFY******************F**SYFRI***********************************************************************************AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER*********KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE*PLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVR***
Disordered Region (DISOPRED)
******L*****************LFIHRF*******************F*****************************************************************************************VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT
Disordered Region (DISEMBL)
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQP*********DCDSVFDSSYFRIPTIDDPQN************EKYRERTDRIVFGEEAQKGKLRIFQE********ALAKALLQAA*****************SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT
Disordered Region (DISPRO)
*K*LRALRTLAPFAEKPNKPRLNPLFIHRFYSAQ***************************************PTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALER**********EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
O82626	423	GTP-binding protein ERG O	N/A	no	0.978	0.981	0.654	1e-155
O82653	437	GTP-binding protein ERG O	yes	no	0.997	0.967	0.624	1e-150
A5EKL6	308	GTPase Era OS=Bradyrhizob	yes	no	0.639	0.879	0.354	1e-42
Q8UGK1	317	GTPase Era OS=Agrobacteri	yes	no	0.648	0.867	0.342	1e-41
A4YWC7	307	GTPase Era OS=Bradyrhizob	yes	no	0.669	0.925	0.338	2e-41
Q8G1P9	311	GTPase Era OS=Brucella su	yes	no	0.665	0.906	0.341	4e-41
B6JGG2	308	GTPase Era OS=Oligotropha	yes	no	0.639	0.879	0.329	9e-41
A6U7A9	310	GTPase Era OS=Sinorhizobi	yes	no	0.648	0.887	0.339	1e-40
Q8YG75	311	GTPase Era OS=Brucella me	yes	no	0.665	0.906	0.337	3e-40
Q92R46	313	GTPase Era OS=Rhizobium m	yes	no	0.648	0.878	0.332	3e-40

>sp|O82626|ERG_ANTMA GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1

 Score =  549 bits (1414), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/431 (65%), Positives = 337/431 (78%), Gaps = 16/431 (3%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETE-------NDCDSVFDSS 53
           MKA+RA   L P     +      +++HRFYSAQPQ TD+E         +  D+VFDSS
Sbjct: 1   MKAVRAALRLRPLTNSIS----TSVYLHRFYSAQPQHTDDEHHPKPEELLHQSDAVFDSS 56

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEER-KHRA 112
           +F +    D  N  A+  +  TWDE+YR+R    VF E+      +I + +EE++ K  A
Sbjct: 57  HFDL----DLNNLAASGAETTTWDERYRDRVKSRVFDEDDTSSYSKILKRDEEKKYKSAA 112

Query: 113 LAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172
           LAK+LL+AAL+ +E E  EVKEEDQKS++VGIIGAPNAGKS++ NY+VGTKV+AVSRKTN
Sbjct: 113 LAKSLLEAALDDEEVEVGEVKEEDQKSLSVGIIGAPNAGKSALTNYIVGTKVSAVSRKTN 172

Query: 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
           TTTHEVLGV+TK DTQIC FDTPGLML KSG  + D+KVR ES WS++ L++VL+V+FDV
Sbjct: 173 TTTHEVLGVLTKRDTQICFFDTPGLMLKKSGIPYNDIKVRNESGWSSITLYDVLIVIFDV 232

Query: 233 HRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292
           HRHLT PDSRV+RLIER+G  +   QKRVLCMNKVDLVTKK DL+KVA++FK LPGYER 
Sbjct: 233 HRHLTRPDSRVVRLIERVGSVSSTSQKRVLCMNKVDLVTKKNDLVKVAKEFKDLPGYERH 292

Query: 293 FMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIP 352
           FM SGLKG GLK L QYL EQAV+RPW EDP  MSEEVMKNISLEVVRE+LLD+VHQEIP
Sbjct: 293 FMVSGLKGYGLKDLAQYLTEQAVKRPWDEDPFAMSEEVMKNISLEVVREKLLDYVHQEIP 352

Query: 353 YSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKR 412
           Y IEHRL+ WK+LRDGSLRIEQH IT K+SQRKILVGK GSKIG IG+EANEELRSIFKR
Sbjct: 353 YGIEHRLMGWKELRDGSLRIEQHFITPKMSQRKILVGKKGSKIGTIGIEANEELRSIFKR 412

Query: 413 DVHLILQVRLK 423
           +VHLIL V++K
Sbjct: 413 NVHLILMVKVK 423

Has a crucial role in plant growth and development, possibly by influencing mitochondrial division.
Antirrhinum majus (taxid: 4151)

>sp|O82653|ERG_ARATH GTP-binding protein ERG OS=Arabidopsis thaliana GN=ERG PE=1 SV=2

 Score =  532 bits (1370), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/437 (62%), Positives = 331/437 (75%), Gaps = 14/437 (3%)

Query: 1   MKALRALRTLAPFAEK-----PNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYF 55
           MKA R+LR L   +       P  P     F+ RFYSAQP   +  + N+  S  DS + 
Sbjct: 1   MKAFRSLRILISISRTTTKTTPRNPHQAQNFLRRFYSAQPNLDEPTSINEDGSSSDSVFD 60

Query: 56  RIP-TIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALA 114
                IDD   ++  K +E TWD+ YRER ++  FG   +KGK+++ +EE  E    ++ 
Sbjct: 61  SSQYPIDDSNVDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKVKVAEEESSEDDEDSVD 120

Query: 115 KALLQAALER--------QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
           ++ + A            +E  E EV+EEDQKS+ VGIIG PNAGKSS+ N+MVGTKVAA
Sbjct: 121 RSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAA 180

Query: 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVL 226
            SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+LF+VL
Sbjct: 181 ASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVL 240

Query: 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286
           +V+FDVHRHL SPDSRV+RLI+ MG++  PKQKRVLCMNKVDLV KKKDLLKVAE+F+ L
Sbjct: 241 IVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDL 300

Query: 287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
           P YER FM SGLKG+G+K L+QYLM+QAV++PW ED  TMSEEV+KNISLEVVRERLLDH
Sbjct: 301 PAYERYFMISGLKGSGVKDLSQYLMDQAVKKPWEEDAFTMSEEVLKNISLEVVRERLLDH 360

Query: 347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
           VHQEIPY +EHRL+DWK+LRDGSLRIEQHLIT KLSQRKILVGK G KIGRIG+EANEEL
Sbjct: 361 VHQEIPYGLEHRLVDWKELRDGSLRIEQHLITPKLSQRKILVGKGGCKIGRIGIEANEEL 420

Query: 407 RSIFKRDVHLILQVRLK 423
           R I  R VHLILQV+LK
Sbjct: 421 RRIMNRKVHLILQVKLK 437

Has a crucial role in plant growth and development, possibly by influencing mitochondrial division.

Arabidopsis thaliana (taxid: 3702)

>sp|A5EKL6|ERA_BRASB GTPase Era OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=era PE=3 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 157/282 (55%), Gaps = 11/282 (3%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V +IGAPN GKS+++N +VG+KV  VSRK  TT   + G++ +  +QI + DTPG+   K
Sbjct: 18  VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGTSQIILVDTPGIFSPK 77

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                   +  V +AWS  +  +++ V+ D  + L      +I       K A    +++
Sbjct: 78  RRLD----RAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAIID------KAAAVAHQKI 127

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
           L +NKVDLV ++K L  VA   + LP + R FM S L G G+  L Q L       P+  
Sbjct: 128 LVVNKVDLVPREKLLALVAAANEKLP-FARTFMISALSGDGVDDLKQALAAMVPPGPFHY 186

Query: 322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
               MS+  M++++ E+ RE++  H+HQE+PY        W + +DGS+RIEQ +   + 
Sbjct: 187 PEDQMSDAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERKDGSIRIEQTIFVERD 246

Query: 382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct: 247 SQRKIVLGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVR 288

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

>sp|Q8UGK1|ERA_AGRT5 GTPase Era OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=era PE=3 SV=1

 Score =  171 bits (432), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 158/286 (55%), Gaps = 11/286 (3%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +S  V +IG  NAGKS+++N +VG KV+ VS K  TT   + G+    + QI   DTPG+
Sbjct: 23  RSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPGI 82

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +        +  V SAW      ++++++ D  R L      ++  +    K  P  
Sbjct: 83  FKPRRRLD----RAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGL----KDVP-- 132

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
           QK++LC+NK+D V K++DLLK+A        ++R FM S   G+G + L  YL+E   + 
Sbjct: 133 QKKILCLNKIDQV-KREDLLKLAAAANEKVAFDRTFMISATNGSGCEDLMDYLVETLPEG 191

Query: 318 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLI 377
           PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ + 
Sbjct: 192 PWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIY 251

Query: 378 TNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
             + SQ+KI +GKNG  I  I   + +EL  I ++ VHL L V+++
Sbjct: 252 VERDSQKKIALGKNGDAIKAISTASRKELSEILEQPVHLFLFVKVR 297

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

>sp|A4YWC7|ERA_BRASO GTPase Era OS=Bradyrhizobium sp. (strain ORS278) GN=era PE=3 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 161/295 (54%), Gaps = 11/295 (3%)

Query: 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ 188
           E++  +   +   V +IGAPN GKS+++N +VG+KV  VSRK  TT   + G++ +  +Q
Sbjct: 4   EQQAGQGATRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGQSQ 63

Query: 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           I + DTPG+   K        +  V +AWS  +  +++ V+ D  + L      +I    
Sbjct: 64  IILVDTPGIFSPKRRLD----RAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAIID--- 116

Query: 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308
              K A    +++L +NKVDLV ++K L  VA   + L  + R FM S L G G+  L +
Sbjct: 117 ---KAASVAHEKILVVNKVDLVPREKLLALVAAANEKL-AFARTFMISALSGDGVDDLRR 172

Query: 309 YLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDG 368
            L E     P+      MS+  M++++ E+ RE++  H+HQE+PY        W +  DG
Sbjct: 173 ALAEMVPPGPFHYPEDQMSDAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERNDG 232

Query: 369 SLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           S+RIEQ +   + SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct: 233 SIRIEQTIFVERDSQRKIVLGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVR 287

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

>sp|Q8G1P9|ERA_BRUSU GTPase Era OS=Brucella suis biovar 1 (strain 1330) GN=era PE=3 SV=1

 Score =  169 bits (428), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 11/293 (3%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC 190
           E +    +S  V +IGAPNAGKS+++N +VGTKV+ V+ K  TT   V G+  +   QI 
Sbjct: 11  ETEATQTRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIV 70

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM 250
           + DTPG+   K     +  +  V +AW      ++++V+ D        +     L+E M
Sbjct: 71  LVDTPGIFRPK----RRLDRAMVTTAWGGAKDADIILVIIDAQGGF---NENAEALLESM 123

Query: 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
                 +QK+VL +NKVD V     LL +A++   L  ++R FM S L G+G K L +YL
Sbjct: 124 KDV---RQKKVLVLNKVDRVDPPV-LLSLAQKANELVPFDRTFMISALNGSGCKDLAKYL 179

Query: 311 MEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSL 370
            E     PW      +S+  M+ ++ E+ RE+L   +H+E+PY+       W++ +DGS+
Sbjct: 180 AESVPNGPWYYPEDQISDIPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSV 239

Query: 371 RIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           RIEQ +   + SQ+KI++G  G  +  IG  A +E+  I ++ VHL L V+++
Sbjct: 240 RIEQVIYVERESQKKIVLGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVR 292

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

>sp|B6JGG2|ERA_OLICO GTPase Era OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=era PE=3 SV=1

 Score =  168 bits (425), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 158/282 (56%), Gaps = 11/282 (3%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V +IGAPN GKS+++N +VG+KV  VSRK  TT   + G++ + + QI + DTPG+   K
Sbjct: 18  VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVEGNAQIVLVDTPGIFTPK 77

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                   +  V +AWS  +  +++ V+ D    L      +   +E +      K  + 
Sbjct: 78  RRLD----RAMVSTAWSGAHDADMVCVLLDARAGLDEEAEAIFTKLEAV------KHPKF 127

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
           L +NK+DLV ++K LL +A++      +   FM + L G G+  L + L     + P+  
Sbjct: 128 LVINKIDLVAREK-LLALAQRANERIAFRETFMVAALSGDGVDDLRRALAAAMPEGPYLY 186

Query: 322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
               MS+  +++++ E+ RE++  ++HQE+PY        WK++R+GS+RIEQ +   + 
Sbjct: 187 PEDQMSDAPLRHLAAEITREKIYRNLHQELPYQSTVETESWKEMRNGSVRIEQTIFVERD 246

Query: 382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           SQRKI++GK G+ I  IG +A +E+  I  + VHL L V+++
Sbjct: 247 SQRKIVLGKGGATIKAIGADARKEIAEIVGQPVHLFLFVKVR 288

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) (taxid: 504832)

>sp|A6U7A9|ERA_SINMW GTPase Era OS=Sinorhizobium medicae (strain WSM419) GN=era PE=3 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 158/286 (55%), Gaps = 11/286 (3%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +S  V +IGA NAGKS++IN +VG KV+ VS K  TT   V G+    + QI   DTPG+
Sbjct: 17  RSGFVALIGATNAGKSTLINRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGI 76

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +        +  V +AW      +++M++ D  R +      ++  ++ +       
Sbjct: 77  FKPRRRLD----RAMVTTAWGGAKDADLIMLLIDSERGIKGDADTILEGLKDV------H 126

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
           Q +VL +NKVD V +++DLLK+A     +  +ER FM S L G+G + +  YL E+  + 
Sbjct: 127 QPKVLVLNKVDQV-RREDLLKLAAAANEVVAFERTFMISALTGSGCEDVMDYLAERLPEG 185

Query: 318 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLI 377
           PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ + 
Sbjct: 186 PWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIY 245

Query: 378 TNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
             + SQ+KI +GK G  I  I   A +E+  I ++ VHL L V+++
Sbjct: 246 VERDSQKKIALGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVR 291

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

>sp|Q8YG75|ERA_BRUME GTPase Era OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=era PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 11/293 (3%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC 190
           E +    +S  V +IGAPNAGKS+++N +VGTKV+ V+ K  TT   V G+  +   QI 
Sbjct: 11  ETEATQTRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIV 70

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM 250
           + DTPG+   K     +  +  V +AW      ++++V+ D        +     L+E M
Sbjct: 71  LVDTPGIFRPK----RRLDRAMVTTAWGGAKDADIILVIIDAQGGF---NENAEALLESM 123

Query: 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
                 +QK+VL +NKVD V     LL +A++   L  ++R FM S L G+G K L +YL
Sbjct: 124 KDV---RQKKVLVLNKVDRVDPPV-LLSLAQKANGLVPFDRTFMISALNGSGCKDLAKYL 179

Query: 311 MEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSL 370
            E     PW      +S+  M+ ++ E+ RE+L   +H+E+PY+       W++ +DGS+
Sbjct: 180 AESVPNGPWYYPEDQISDMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSV 239

Query: 371 RIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           RIEQ +   + SQ+KI++G  G  +  IG  A +E+  I ++ VH  L V+++
Sbjct: 240 RIEQVIYVERESQKKIVLGHKGETVKAIGQAARKEISEILEQTVHQFLFVKVR 292

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

>sp|Q92R46|ERA_RHIME GTPase Era OS=Rhizobium meliloti (strain 1021) GN=era PE=3 SV=1

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 156/286 (54%), Gaps = 11/286 (3%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +S  V +IGA NAGKS+++N +VG KV+ VS K  TT   + G+      QI   DTPG+
Sbjct: 20  RSGFVALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIVFMDTPGI 79

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +        +  V +AW      +++M++ D  R +      ++  ++ +       
Sbjct: 80  FKPRRRLD----RAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEV------H 129

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
           Q +VL +NKVD V +++DLLK+A     +  +ER FM S L G+G + +  YL E   + 
Sbjct: 130 QPKVLVLNKVDQV-RREDLLKLAAAANDVVAFERTFMISALTGSGCEDVMDYLAETLPEG 188

Query: 318 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLI 377
           PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ + 
Sbjct: 189 PWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIY 248

Query: 378 TNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
             + SQ+KI +GK G  I  I   A +E+  I ++ VHL L V+++
Sbjct: 249 VERDSQKKIALGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVR 294

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Rhizobium meliloti (strain 1021) (taxid: 266834)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
225423607	423	PREDICTED: GTP-binding protein ERG-like	0.974	0.976	0.690	1e-170
297738021	423	unnamed protein product [Vitis vinifera]	0.974	0.976	0.688	1e-169
147860032	928	hypothetical protein VITISV_029539 [Viti	0.966	0.441	0.686	1e-168
255551213	427	GTP-binding protein erg, putative [Ricin	0.988	0.981	0.714	1e-167
449433519	430	PREDICTED: GTP-binding protein ERG-like	0.981	0.967	0.686	1e-165
224138540	428	predicted protein [Populus trichocarpa]	0.983	0.974	0.691	1e-161
356519381	415	PREDICTED: GTP-binding protein ERG-like	0.952	0.973	0.683	1e-155
297851576	435	GTP-binding protein [Arabidopsis lyrata	0.990	0.965	0.632	1e-154
6015115	423	RecName: Full=GTP-binding protein ERG gi	0.978	0.981	0.654	1e-153
357483467	469	GTP-binding protein ERG [Medicago trunca	0.971	0.878	0.6	1e-149

>gi|225423607|ref|XP_002274221.1| PREDICTED: GTP-binding protein ERG-like [Vitis vinifera]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/433 (69%), Positives = 344/433 (79%), Gaps = 20/433 (4%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETEN-------DCDSVFDSS 53
           MKALR LR L   + K  KP L    ++RFY+AQPQQ D+ T         D D+VFDSS
Sbjct: 1   MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSS 60

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            F +P +       +    +PTWD +YR + DR +FGEE QK K      EE+ERK RA+
Sbjct: 61  QFALPNM-----GTSPVPDQPTWDREYRAKADRTIFGEETQKQK-----SEEDERKRRAI 110

Query: 114 AKALLQAALERQEEEEEE---VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK 170
             A        Q+ +EE+   VKEEDQ+S++VGIIGAPNAGKSS+ N++VGTKVAAVSRK
Sbjct: 111 VLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRK 170

Query: 171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVF 230
           TNTTTHEVLGVMTK +TQIC FDTPGLML  SGY + D++ RVESAWS+V L++VL+V+F
Sbjct: 171 TNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIF 230

Query: 231 DVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
           DVHRHL+ PDSRV+RLIERMG QA PKQKRVLCMNKVDLV KKKDLLKVA++FK LPGYE
Sbjct: 231 DVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYE 290

Query: 291 RIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQE 350
           R FM SGLKG+G+K LTQ+LMEQAV+RPW EDP TMSEEVMKNISLEVVRERLLDHVHQE
Sbjct: 291 RYFMISGLKGSGVKDLTQFLMEQAVKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQE 350

Query: 351 IPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIF 410
           IPY I+HRLIDWK+LRDGSLRIEQHLIT K SQRKILVGK GSKIGRIG+EANEELRSIF
Sbjct: 351 IPYGIDHRLIDWKELRDGSLRIEQHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIF 410

Query: 411 KRDVHLILQVRLK 423
           KRDVHLILQVR+K
Sbjct: 411 KRDVHLILQVRVK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738021|emb|CBI27222.3| unnamed protein product [Vitis vinifera]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/433 (68%), Positives = 343/433 (79%), Gaps = 20/433 (4%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETEN-------DCDSVFDSS 53
           MKALR LR L   + K  KP L    ++RFY+AQPQQ D+ T         D D+VFDSS
Sbjct: 1   MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSS 60

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            F +P +       +    +PTWD +YR + DR +FGEE QK K      EE+ERK RA+
Sbjct: 61  QFALPNM-----GTSPVPDQPTWDREYRAKADRTIFGEETQKQK-----SEEDERKRRAI 110

Query: 114 AKALLQAALERQEEEEEE---VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK 170
             A        Q+ +EE+   VKEEDQ+S++VGIIGAPNAGKSS+ N++VGTKVAAVSRK
Sbjct: 111 VLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRK 170

Query: 171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVF 230
           TNTTTHEVLGVMTK +TQIC FDTPGLML  SGY + D++ RVESAWS+V L++VL+V+F
Sbjct: 171 TNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIF 230

Query: 231 DVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
           DVHRHL+ PDSRV+RLIERMG QA PKQKRVLCMNKVDLV KKKDLLKVA++FK LPGYE
Sbjct: 231 DVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYE 290

Query: 291 RIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQE 350
           R FM SGLKG+G+K LTQ+LMEQA +RPW EDP TMSEEVMKNISLEVVRERLLDHVHQE
Sbjct: 291 RYFMISGLKGSGVKDLTQFLMEQAFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQE 350

Query: 351 IPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIF 410
           IPY I+HRLIDWK+LRDGSLRIEQHLIT K SQRKILVGK GSKIGRIG+EANEELRSIF
Sbjct: 351 IPYGIDHRLIDWKELRDGSLRIEQHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIF 410

Query: 411 KRDVHLILQVRLK 423
           KRDVHLILQVR+K
Sbjct: 411 KRDVHLILQVRVK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860032|emb|CAN83131.1| hypothetical protein VITISV_029539 [Vitis vinifera]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/430 (68%), Positives = 340/430 (79%), Gaps = 20/430 (4%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETEN-------DCDSVFDSS 53
           MKALR LR L   + K  KP L    ++RFY+AQPQQ D+ T         D D+VFDSS
Sbjct: 467 MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSS 526

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            F +P +       +    +PTWD +YR + DR +FGEE QK K      EE+ERK RA+
Sbjct: 527 QFALPNM-----GTSPVPDQPTWDREYRAKADRTIFGEETQKQK-----SEEDERKRRAI 576

Query: 114 AKALLQAALERQEEEEEE---VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK 170
             A        Q+ +EE+   VKEEDQ+S++VGIIGAPNAGKSS+ N++VGTKVAAVSRK
Sbjct: 577 VLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRK 636

Query: 171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVF 230
           TNTTTHEVLGVMTK +TQIC FDTPGLML  SGY + D++ RVESAWS+V L++VL+V+F
Sbjct: 637 TNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIF 696

Query: 231 DVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
           DVHRHL+ PDSRV+RLIERMG QA PKQKRVLCMNKVDLV KKKDLLKVA++FK LPGYE
Sbjct: 697 DVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYE 756

Query: 291 RIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQE 350
           R FM SGLKG+G+K LTQ+LMEQA +RPW EDP TMSEEVMKNISLEVVRERLLDHVHQE
Sbjct: 757 RYFMISGLKGSGVKDLTQFLMEQAFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQE 816

Query: 351 IPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIF 410
           IPY I+HRLIDWK+LRDGSLRIEQHLIT K SQRKILVGK GSKIGRIG+EANEELRSIF
Sbjct: 817 IPYGIDHRLIDWKELRDGSLRIEQHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIF 876

Query: 411 KRDVHLILQV 420
           KRDVHLILQ+
Sbjct: 877 KRDVHLILQI 886

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551213|ref|XP_002516653.1| GTP-binding protein erg, putative [Ricinus communis] gi|223544148|gb|EEF45672.1| GTP-binding protein erg, putative [Ricinus communis]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/428 (71%), Positives = 360/428 (84%), Gaps = 9/428 (2%)

Query: 4   LRALRTLAPFAEKP-NKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDD 62
           ++A R L     KP N   L+   +  F+SAQPQQ D+E E++ DSVFDSS++ +P  D 
Sbjct: 1   MKAFRILGTLTSKPRNSHPLHQTLLSHFFSAQPQQNDSENESN-DSVFDSSHYTVPNFDT 59

Query: 63  PQNNNAAKK--QEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEE---ERKHRALAKAL 117
             ++++++   QEP WD+KYR+R DR+VF +E QK   +  QEEEE   + + R LAKAL
Sbjct: 60  NNSSSSSRTTPQEPAWDKKYRQRADRLVFNQEPQKANFKRLQEEEEEEVDERSRVLAKAL 119

Query: 118 LQAALER--QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT 175
           L+AALER   ++E+E V+EEDQKS+ VGI+GAPNAGKS++ NYMVGTKV+AVSRKTNTTT
Sbjct: 120 LRAALERPDDQDEDEVVREEDQKSLCVGIVGAPNAGKSALTNYMVGTKVSAVSRKTNTTT 179

Query: 176 HEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235
           HEVLGVMTK DTQIC FDTPGLML  +GYS+KDVK RVE+AWS VNL+++LMVVFDVHRH
Sbjct: 180 HEVLGVMTKGDTQICFFDTPGLMLKSNGYSYKDVKARVENAWSTVNLYDMLMVVFDVHRH 239

Query: 236 LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295
           LT PDSRVIRLIER+G Q   KQKR+LCMNKVDLV KKKDLLKVAEQFK LPGY+R FM 
Sbjct: 240 LTRPDSRVIRLIERVGSQTNTKQKRILCMNKVDLVEKKKDLLKVAEQFKDLPGYDRCFMI 299

Query: 296 SGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSI 355
           SGLKGAG+K LTQYL+EQAV+RPW ED + M+EEVMKNISLEVVRERLLDH+HQEIPY+I
Sbjct: 300 SGLKGAGVKDLTQYLIEQAVKRPWDEDSVHMTEEVMKNISLEVVRERLLDHIHQEIPYNI 359

Query: 356 EHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVH 415
           EHRLIDWK+LRDGSLRIEQHLIT+KLSQRKILVGKNGSKIGRIG+EANEELRSIFKR+VH
Sbjct: 360 EHRLIDWKELRDGSLRIEQHLITSKLSQRKILVGKNGSKIGRIGIEANEELRSIFKREVH 419

Query: 416 LILQVRLK 423
           LILQVRLK
Sbjct: 420 LILQVRLK 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433519|ref|XP_004134545.1| PREDICTED: GTP-binding protein ERG-like [Cucumis sativus] gi|449506779|ref|XP_004162846.1| PREDICTED: GTP-binding protein ERG-like [Cucumis sativus]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/437 (68%), Positives = 351/437 (80%), Gaps = 21/437 (4%)

Query: 1   MKALRALRTLAPFAEKPNKPRL-NPLFIHRFYSAQPQQTDN-------ETENDCDSVFDS 52
           MKALRALR       K ++P L NP+F  R+YSAQP+Q D+       +TEN  DSVFDS
Sbjct: 1   MKALRALRIATTIPPKSHRPFLTNPIFPPRYYSAQPEQDDSNHNPTLSDTENAPDSVFDS 60

Query: 53  SYFRIPTIDDPQNNNAAKKQEP--TWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKH 110
           S F IPT+D      +  K EP   WD+KYR + D+++FG++++  K ++ +EEEE R+ 
Sbjct: 61  SQFDIPTMD------STTKTEPDSGWDKKYRAKADKLIFGKDSEGVKYKLMEEEEERRR- 113

Query: 111 RALAKALLQAALER----QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
           RALAK+LL+A LE     QE+ E  VKEEDQKS+AVGI+GAPNAGKS++ NYMVGTKVAA
Sbjct: 114 RALAKSLLEAVLETADDDQEDGERTVKEEDQKSLAVGIVGAPNAGKSALTNYMVGTKVAA 173

Query: 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVL 226
           VSRK NTTTHEVLG MTK +TQIC FDTPGLML   G+ HKD+K RV+SAWS+V L++VL
Sbjct: 174 VSRKINTTTHEVLGTMTKGNTQICFFDTPGLMLKSKGFPHKDMKARVQSAWSSVELYDVL 233

Query: 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286
           +V+FDVHRHL  PDSRV+ LI+RMG    PKQKRVLCMNKVDLV  KKDLL VAEQFK L
Sbjct: 234 IVIFDVHRHLARPDSRVVGLIKRMGASPHPKQKRVLCMNKVDLVENKKDLLTVAEQFKDL 293

Query: 287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
           PGYER FM SGLKGAG+K L++YL EQAV+RPW EDP TM+EE+MKNISLEVVRERLLDH
Sbjct: 294 PGYERYFMISGLKGAGVKDLSKYLTEQAVKRPWDEDPYTMNEEMMKNISLEVVRERLLDH 353

Query: 347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
           VHQEIPY IEHRL+DWK+ R+GSLRIEQH ITNK SQRKILVGKNGSKIGRIGVEANEEL
Sbjct: 354 VHQEIPYGIEHRLVDWKEFRNGSLRIEQHFITNKPSQRKILVGKNGSKIGRIGVEANEEL 413

Query: 407 RSIFKRDVHLILQVRLK 423
           RSIFK+ VHLILQV+LK
Sbjct: 414 RSIFKKTVHLILQVKLK 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138540|ref|XP_002326628.1| predicted protein [Populus trichocarpa] gi|222833950|gb|EEE72427.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/434 (69%), Positives = 349/434 (80%), Gaps = 17/434 (3%)

Query: 1   MKALRALRTLAPFAEKPNKPRL--NPLFIHRFYSAQPQQTDNETEND-CDSVFDSSYFRI 57
           MK+LRALR  +  A KP  P +  N   +  F+SAQP Q  NE+END  DSVFDS+++  
Sbjct: 1   MKSLRALRIASTLASKP-PPFVCTNQNLLSHFFSAQPDQ--NESENDNSDSVFDSTHY-- 55

Query: 58  PTIDDPQNNNA----AKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            TID   NNN+    A  +EPTWDE+YRER D++VF +E QKGKL+I +E+EE+ + +  
Sbjct: 56  -TIDSSFNNNSNTTSATHKEPTWDERYRERVDKLVFKKETQKGKLQILEEQEEQVEEQRR 114

Query: 114 AKALLQAALERQEEEEEEVKEE----DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR 169
                       E  +EE  EE    DQKS++VGIIGAPNAGKS++ N+MVGTKVAAVSR
Sbjct: 115 RLLAKALLEAALERPDEEEGEEVREEDQKSLSVGIIGAPNAGKSALTNFMVGTKVAAVSR 174

Query: 170 KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV 229
           KTNTTTHEVLGVMT  DTQIC FDTPGLM+N  GY +KD+K RVESAWS+V+L++VLMV+
Sbjct: 175 KTNTTTHEVLGVMTDGDTQICFFDTPGLMVNNRGYPYKDMKTRVESAWSSVDLYDVLMVI 234

Query: 230 FDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289
           FDVHRHLT PDSRV+ LI+ MG QA PKQKRVLCMNK+DLV KKKDLLKV E+FK LPGY
Sbjct: 235 FDVHRHLTRPDSRVVGLIKCMGAQANPKQKRVLCMNKIDLVEKKKDLLKVVEEFKDLPGY 294

Query: 290 ERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQ 349
           +R FM SGLKG+G+K L QYLMEQAV+RPW EDPL+MSEEVMKNISLEVVRERLLDHVHQ
Sbjct: 295 DRHFMISGLKGSGVKHLNQYLMEQAVKRPWDEDPLSMSEEVMKNISLEVVRERLLDHVHQ 354

Query: 350 EIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSI 409
           EIPY I+HRL+DWK+LRDGSLRIEQH IT KLSQRKILVGK GSKIGRIGVEANEELRSI
Sbjct: 355 EIPYGIDHRLMDWKELRDGSLRIEQHFITPKLSQRKILVGKKGSKIGRIGVEANEELRSI 414

Query: 410 FKRDVHLILQVRLK 423
           FKR+VHLILQVR+K
Sbjct: 415 FKREVHLILQVRIK 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519381|ref|XP_003528351.1| PREDICTED: GTP-binding protein ERG-like [Glycine max]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/430 (68%), Positives = 345/430 (80%), Gaps = 26/430 (6%)

Query: 4   LRALRTLAPFAEKPNKPRLNPLFIHR-FYSAQPQ-QTDNETENDCDSVFDSSYFRI---P 58
           ++ALRTL      P      P  + R F+SAQPQ   D+ T++   SVFDSS++ +   P
Sbjct: 1   MKALRTLRRTLYSPT-----PATVFRAFFSAQPQPHHDDPTDS---SVFDSSHYALEAEP 52

Query: 59  TIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALL 118
           T+          + +PTWDEKYR R DR+VFGEE  KGKLR+ +EE+E R+       L 
Sbjct: 53  TL--------KPEPKPTWDEKYRARADRVVFGEEGPKGKLRVKEEEDERRRRALAKALLE 104

Query: 119 QAALERQEEEEEE-----VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT 173
            A  E ++EEEE      VKE+DQKS++VGIIGAPNAGKS++ NYMVGTKVAAVSRKTNT
Sbjct: 105 AAMDEGEDEEEEGKGAGLVKEDDQKSLSVGIIGAPNAGKSALTNYMVGTKVAAVSRKTNT 164

Query: 174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233
           TTHEV+GV+TK DTQIC FDTPGLMLN  G+ ++DVKVRVESAWS+VNL+EVL+V+FDVH
Sbjct: 165 TTHEVVGVLTKGDTQICFFDTPGLMLNCGGFPYRDVKVRVESAWSSVNLYEVLIVIFDVH 224

Query: 234 RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293
           RH+T PDSRVI+LI+RMG ++ P Q+R+LCMNK+DLV KKKDLLKVAE+FK LPGYER F
Sbjct: 225 RHITRPDSRVIQLIKRMGARSIPNQRRILCMNKIDLVEKKKDLLKVAEEFKDLPGYERYF 284

Query: 294 MTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPY 353
           M SGLKG+G+K LTQYLMEQAVQRPW EDP TMSEEVMK I+LEVVRERLLDHVHQEIPY
Sbjct: 285 MISGLKGSGVKDLTQYLMEQAVQRPWEEDPFTMSEEVMKMIALEVVRERLLDHVHQEIPY 344

Query: 354 SIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRD 413
            +EHRLIDWK+LRDGSLRIEQH ITNKLSQ KILVGKNGSKIGRIG+EANEELRSIFK+ 
Sbjct: 345 DVEHRLIDWKELRDGSLRIEQHFITNKLSQCKILVGKNGSKIGRIGIEANEELRSIFKKQ 404

Query: 414 VHLILQVRLK 423
           VHLIL+VR K
Sbjct: 405 VHLILRVRHK 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851576|ref|XP_002893669.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata] gi|297339511|gb|EFH69928.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/438 (63%), Positives = 335/438 (76%), Gaps = 18/438 (4%)

Query: 1   MKALRALRTLAPFAEK--PNKPRLNPLFIHRFYSAQPQQTD----NETENDCDSVFDSSY 54
           MKA R+LR L   +    P+K      F+ RFYSAQP   +    NE     DSVFDSS 
Sbjct: 1   MKAFRSLRILISISRTTTPHKSHQAQNFLRRFYSAQPNLDEPTSVNEDGTSSDSVFDSSQ 60

Query: 55  FRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQE-----EEEERK 109
           +    I+D   ++  K +E TWD+ YRER ++  FG   +KGKL++ +E     ++E+  
Sbjct: 61  Y---PIEDSHGDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKLKVAEEVSSEDDDEDNI 117

Query: 110 HRALAKALLQAALERQEEEEE----EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165
            R+   A        +  +EE    EV+EEDQKS+ VGIIG PNAGKSS+ N+MVGTKVA
Sbjct: 118 DRSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVA 177

Query: 166 AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV 225
           A SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+LF+V
Sbjct: 178 AASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKSRVQNAWTSVDLFDV 237

Query: 226 LMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH 285
           L+V+FDVHRHL SPDSRV+RLI+ MG++  PKQKR+LCMNKVDLV KKKDLLKVAE+F+ 
Sbjct: 238 LIVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRILCMNKVDLVEKKKDLLKVAEEFQD 297

Query: 286 LPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLD 345
           LP YER FM SGLKG+G+K L+QYLM+QAV++PW ED  TMSEEV+KNISLEVVRERLLD
Sbjct: 298 LPAYERYFMISGLKGSGVKDLSQYLMDQAVKKPWEEDAFTMSEEVLKNISLEVVRERLLD 357

Query: 346 HVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEE 405
           HVHQEIPY +EHRL+DWK+LRDGSLRIEQHLIT K SQRKILVGK GSKIGRIG+EANEE
Sbjct: 358 HVHQEIPYGVEHRLVDWKELRDGSLRIEQHLITPKPSQRKILVGKGGSKIGRIGIEANEE 417

Query: 406 LRSIFKRDVHLILQVRLK 423
           LR I  R VHLILQV+LK
Sbjct: 418 LRRIMNRKVHLILQVKLK 435

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6015115|sp|O82626.1|ERG_ANTMA RecName: Full=GTP-binding protein ERG gi|3676069|emb|CAA76925.1| ERG protein [Antirrhinum majus]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/431 (65%), Positives = 337/431 (78%), Gaps = 16/431 (3%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETE-------NDCDSVFDSS 53
           MKA+RA   L P     +      +++HRFYSAQPQ TD+E         +  D+VFDSS
Sbjct: 1   MKAVRAALRLRPLTNSIS----TSVYLHRFYSAQPQHTDDEHHPKPEELLHQSDAVFDSS 56

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEER-KHRA 112
           +F +    D  N  A+  +  TWDE+YR+R    VF E+      +I + +EE++ K  A
Sbjct: 57  HFDL----DLNNLAASGAETTTWDERYRDRVKSRVFDEDDTSSYSKILKRDEEKKYKSAA 112

Query: 113 LAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172
           LAK+LL+AAL+ +E E  EVKEEDQKS++VGIIGAPNAGKS++ NY+VGTKV+AVSRKTN
Sbjct: 113 LAKSLLEAALDDEEVEVGEVKEEDQKSLSVGIIGAPNAGKSALTNYIVGTKVSAVSRKTN 172

Query: 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
           TTTHEVLGV+TK DTQIC FDTPGLML KSG  + D+KVR ES WS++ L++VL+V+FDV
Sbjct: 173 TTTHEVLGVLTKRDTQICFFDTPGLMLKKSGIPYNDIKVRNESGWSSITLYDVLIVIFDV 232

Query: 233 HRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292
           HRHLT PDSRV+RLIER+G  +   QKRVLCMNKVDLVTKK DL+KVA++FK LPGYER 
Sbjct: 233 HRHLTRPDSRVVRLIERVGSVSSTSQKRVLCMNKVDLVTKKNDLVKVAKEFKDLPGYERH 292

Query: 293 FMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIP 352
           FM SGLKG GLK L QYL EQAV+RPW EDP  MSEEVMKNISLEVVRE+LLD+VHQEIP
Sbjct: 293 FMVSGLKGYGLKDLAQYLTEQAVKRPWDEDPFAMSEEVMKNISLEVVREKLLDYVHQEIP 352

Query: 353 YSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKR 412
           Y IEHRL+ WK+LRDGSLRIEQH IT K+SQRKILVGK GSKIG IG+EANEELRSIFKR
Sbjct: 353 YGIEHRLMGWKELRDGSLRIEQHFITPKMSQRKILVGKKGSKIGTIGIEANEELRSIFKR 412

Query: 413 DVHLILQVRLK 423
           +VHLIL V++K
Sbjct: 413 NVHLILMVKVK 423

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483467|ref|XP_003612020.1| GTP-binding protein ERG [Medicago truncatula] gi|355513355|gb|AES94978.1| GTP-binding protein ERG [Medicago truncatula]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/480 (60%), Positives = 355/480 (73%), Gaps = 68/480 (14%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQP--QQTDNETENDCDSVFDSSYFRIP 58
           MK+LR  +        P+ P++       F+SA+P   + D + E+  D+ FDSS++ IP
Sbjct: 1   MKSLRIFKNT--LYSTPS-PKITTTVFRAFFSAEPLTPEPDPQPEHS-DATFDSSHYEIP 56

Query: 59  TIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALL 118
            +     NN  +K + +W++KYR+RTD++VFG+E  KG+++ F+EEEEERK +AL KALL
Sbjct: 57  IL-----NNNDEKPKVSWNKKYRDRTDKLVFGDEP-KGRIK-FKEEEEERKTKALEKALL 109

Query: 119 QAALERQEEEEEE-------VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT 171
           +AAL + EEEEEE       V EEDQKS++VGIIGAPNAGKSS+ NYMVGTKVAAVSRKT
Sbjct: 110 EAALSKPEEEEEEEDEDVGVVNEEDQKSLSVGIIGAPNAGKSSLTNYMVGTKVAAVSRKT 169

Query: 172 NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFD 231
           NTTTHEV+GV+TK DTQIC FDTPGL+LN SG+ +KD K RVESAWS+VNL+EVL+V+FD
Sbjct: 170 NTTTHEVVGVLTKGDTQICFFDTPGLVLNCSGFPYKDAKARVESAWSSVNLYEVLIVIFD 229

Query: 232 VHRHLTS------------------------------------------------PDSRV 243
           VHRH+T                                                 PDSRV
Sbjct: 230 VHRHITRTIEARSRCSGTSLCCGEMRCVRRRERTGCREDIRSVIPFRFLTFHQYRPDSRV 289

Query: 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303
           ++LI+RMG+++ P QKRVLCMNK+DLV KKKDL KVAE+F++LPG+ER FM SG+KGAG+
Sbjct: 290 VKLIKRMGERSIPNQKRVLCMNKIDLVEKKKDLTKVAEEFENLPGFERRFMISGMKGAGV 349

Query: 304 KALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWK 363
           K LTQ+LMEQA++RPW EDP TM+EEVMK ISLEVVRERLLDHVHQEIPY IEHRLIDWK
Sbjct: 350 KDLTQFLMEQALERPWEEDPFTMTEEVMKMISLEVVRERLLDHVHQEIPYDIEHRLIDWK 409

Query: 364 DLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           +LRDGSLRIEQH +TNKL Q KILVGK GSKIGRIG+EANEELR+IFK+ VHL+LQV+LK
Sbjct: 410 ELRDGSLRIEQHFLTNKLGQLKILVGKRGSKIGRIGIEANEELRTIFKKQVHLVLQVKLK 469

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2015771	437	AT1G30960 [Arabidopsis thalian	0.988	0.958	0.585	1.4e-126
UNIPROTKB|E2QYF7	437	ERAL1 "Uncharacterized protein	0.320	0.311	0.382	2.1e-34
UNIPROTKB|D2GU20	437	ERAL1 "GTPase Era, mitochondri	0.320	0.311	0.382	8.7e-34
UNIPROTKB|O75616	437	ERAL1 "GTPase Era, mitochondri	0.320	0.311	0.360	1.9e-33
UNIPROTKB|A5PK43	437	ERAL1 "GTPase Era, mitochondri	0.320	0.311	0.352	5.6e-33
TIGR_CMR|SPO_0691	301	SPO_0691 "GTP-binding protein	0.643	0.906	0.297	2.3e-32
UNIPROTKB|F1RNA7	437	LOC100518578 "Uncharacterized	0.320	0.311	0.352	1.6e-31
RGD|1304714	437	Eral1 "Era (G-protein)-like 1	0.320	0.311	0.345	2.4e-31
UNIPROTKB|F1P349	458	ERAL1 "GTPase Era, mitochondri	0.332	0.307	0.319	5.4e-31
MGI|MGI:1889295	437	Eral1 "Era (G-protein)-like 1	0.320	0.311	0.330	2.1e-30

TAIR|locus:2015771 AT1G30960 [Arabidopsis thaliana (taxid:3702)]

 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 258/441 (58%), Positives = 308/441 (69%)

Query:     1 MKALRALRTLAPFAEKPNK--PRLNPL----FIHRFYSAQPQQTD----NETENDCDSVF 50
             MKA R+LR L   +    K  PR NP     F+ RFYSAQP   +    NE  +  DSVF
Sbjct:     1 MKAFRSLRILISISRTTTKTTPR-NPHQAQNFLRRFYSAQPNLDEPTSINEDGSSSDSVF 59

Query:    51 DSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEXXXX 110
             DSS +  P IDD   ++  K +E TWD+ YRER ++  FG   +KGK+++ +EE      
Sbjct:    60 DSSQY--P-IDDSNVDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKVKVAEEESSEDDE 116

Query:   111 XXXXXXXXXXXXXXXXXXXX--------XXXXXXXXSVAVGIIGAPNAGKSSIINYMVGT 162
                                                 S+ VGIIG PNAGKSS+ N+MVGT
Sbjct:   117 DSVDRSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGT 176

Query:   163 KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222
             KVAA SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+L
Sbjct:   177 KVAAASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDL 236

Query:   223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQ 282
             F+VL+V+FDVHRHL SPDSRV+RLI+ MG++  PKQKRVLCMN              AE+
Sbjct:   237 FDVLIVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEE 296

Query:   283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRER 342
             F+ LP YER FM SGLKG+G+K L+QYLM+QAV++PW ED  TMSEEV+KNISLEVVRER
Sbjct:   297 FQDLPAYERYFMISGLKGSGVKDLSQYLMDQAVKKPWEEDAFTMSEEVLKNISLEVVRER 356

Query:   343 LLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEA 402
             LLDHVHQEIPY +EHRL+DWK+LRDGSLRIEQHLIT KLSQRKILVGK G KIGRIG+EA
Sbjct:   357 LLDHVHQEIPYGLEHRLVDWKELRDGSLRIEQHLITPKLSQRKILVGKGGCKIGRIGIEA 416

Query:   403 NEELRSIFKRDVHLILQVRLK 423
             NEELR I  R VHLILQV+LK
Sbjct:   417 NEELRRIMNRKVHLILQVKLK 437

GO:0003723 "RNA binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

UNIPROTKB|E2QYF7 ERAL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 52/136 (38%), Positives = 79/136 (58%)

Query:   287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
             P +  IFM S L    +K L QYL+ QA+  PW      ++ +  + I   ++RE+LL+H
Sbjct:   300 PHFREIFMLSALSQEDVKTLKQYLLAQALPGPWEYHSGVLTSQTPEEICANIIREKLLEH 359

Query:   347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
             + QE+PYS++ + + W++   G L IEQ L+ +K S  +IL+G  G  I +I  EA  +L
Sbjct:   360 LPQEMPYSVQQKTVLWEEGPSGELVIEQKLLVSKESHVRILIGPKGRLIAQIAQEAGHDL 419

Query:   407 RSIFKRDVHLILQVRL 422
               IF  DV L L V+L
Sbjct:   420 MDIFLCDVQLRLSVKL 435

GO:0043024 "ribosomal small subunit binding" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|D2GU20 ERAL1 "GTPase Era, mitochondrial" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 250 (93.1 bits), Expect = 8.7e-34, Sum P(2) = 8.7e-34
 Identities = 52/136 (38%), Positives = 78/136 (57%)

Query:   287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
             P ++ IFM S L    +K L QYL+ QA   PW      ++ +  + I   ++RE+LL+H
Sbjct:   300 PHFQEIFMLSALSQEDVKTLKQYLLAQARPGPWEFHSGVLTSQTPEEICANIIREKLLEH 359

Query:   347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
             + QE+PYS++ R + W++   G L IEQ L+  K S  +IL+G  G  I +I  E + +L
Sbjct:   360 LPQEMPYSVQQRTVMWEEGPSGELVIEQKLLVPKKSHVRILIGPKGHLISQIAQEVSRDL 419

Query:   407 RSIFKRDVHLILQVRL 422
               IF  DV L L V+L
Sbjct:   420 MDIFLCDVRLRLSVKL 435

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

GO:0043024 "ribosomal small subunit binding" evidence=ISS

UNIPROTKB|O75616 ERAL1 "GTPase Era, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 49/136 (36%), Positives = 77/136 (56%)

Query:   287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
             P ++ IFM S L    +K L QYL+ QA   PW      ++ +  + I   ++RE+LL+H
Sbjct:   300 PHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEH 359

Query:   347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
             + QE+PY+++ +   W++   G L I+Q L+  K S  K+L+G  G  I +I  EA  +L
Sbjct:   360 LPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDL 419

Query:   407 RSIFKRDVHLILQVRL 422
               IF  DV + L V+L
Sbjct:   420 MDIFLCDVDIRLSVKL 435

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0003723 "RNA binding" evidence=NAS

GO:0005525 "GTP binding" evidence=NAS

GO:0043024 "ribosomal small subunit binding" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0019843 "rRNA binding" evidence=IDA

GO:0000028 "ribosomal small subunit assembly" evidence=IMP

UNIPROTKB|A5PK43 ERAL1 "GTPase Era, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 5.6e-33, Sum P(2) = 5.6e-33
 Identities = 48/136 (35%), Positives = 78/136 (57%)

Query:   287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
             P ++ IFM S L    +K L QYL+ QA   PW      ++ +  + I   ++RE+LL++
Sbjct:   300 PHFQEIFMLSALSQEDVKTLKQYLLAQARPGPWEFHSEVLTSQTPEEICANMIREKLLEY 359

Query:   347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
             + +E+PY+++ + + W +   G L IEQ L+ +K S  KIL+G  G  I +I  E   +L
Sbjct:   360 LPEEVPYNVQQKTVVWDEGPSGELVIEQKLLVSKESHMKILIGPKGYLIAQIAQEVGRDL 419

Query:   407 RSIFKRDVHLILQVRL 422
              +IF  +V L L V+L
Sbjct:   420 MNIFLCEVQLRLSVKL 435

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

GO:0043024 "ribosomal small subunit binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

TIGR_CMR|SPO_0691 SPO_0691 "GTP-binding protein Era" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 84/282 (29%), Positives = 143/282 (50%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
             V +IG PNAGKS+++N MVG KV+ V+ K  TT   + GV  + + QI   DTPGL   +
Sbjct:     8 VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRTRIRGVAMEGEAQIVFVDTPGLFQPR 67

Query:   202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                     +  V +AW      ++++++ + HR +T     V R++E + + A  K + V
Sbjct:    68 RRLD----RAMVAAAWGGAADADIVVLMIEAHRGITEG---VERILEGLAEIA--KGRTV 118

Query:   262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
                               +E       + R FM S  +G G++ L ++L  +  + PW  
Sbjct:   119 ALAINKIDRVPAEKLLGLSEALNARFEFARTFMISAERGHGVEDLRKWLAAELPESPWLY 178

Query:   322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
                 +++  M+ I+ E+ RE+L   +HQE+PY +     +W++ +DGS RI+Q +   + 
Sbjct:   179 PEDQIADLPMRMIAAEITREKLTLRLHQELPYQLTVETENWEERKDGSARIDQVIYVMRD 238

Query:   382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
               + I++GK G  +  +G  A  EL     R VHL LQV+++
Sbjct:   239 GHKGIVLGKRGETVKAVGQAARVELEEFLDRKVHLFLQVKVR 280

GO:0005525 "GTP binding" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

UNIPROTKB|F1RNA7 LOC100518578 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
 Identities = 48/136 (35%), Positives = 77/136 (56%)

Query:   287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
             P ++ IFM S L    +K L QYL+ QA   PW      ++ +  + I   +VRE+LL++
Sbjct:   300 PHFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIVREKLLEY 359

Query:   347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
             + QE+PY ++ + + W++   G L IEQ L+  K S  ++L+G  G  I +I  E  ++L
Sbjct:   360 LPQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIAQEVGQDL 419

Query:   407 RSIFKRDVHLILQVRL 422
               IF  +V L L V+L
Sbjct:   420 MDIFLCEVQLRLSVKL 435

GO:0043024 "ribosomal small subunit binding" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

RGD|1304714 Eral1 "Era (G-protein)-like 1 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 230 (86.0 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
 Identities = 47/136 (34%), Positives = 79/136 (58%)

Query:   287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
             P ++ IFM S L    +  L QYL+ QA   PW      ++ +  + I    +RE+LL++
Sbjct:   300 PYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEEICANKIREKLLEY 359

Query:   347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
             + +E+PYS++ + + W++   G L I+Q+L+  K S  +IL+G+ G  I +I  E +++L
Sbjct:   360 LPEEVPYSVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVSQDL 419

Query:   407 RSIFKRDVHLILQVRL 422
               IF  DV L L V+L
Sbjct:   420 MDIFLCDVLLRLSVKL 435

GO:0000028 "ribosomal small subunit assembly" evidence=IEA;ISO;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA;ISO;ISS

GO:0019843 "rRNA binding" evidence=IEA;ISO;ISS

GO:0043024 "ribosomal small subunit binding" evidence=IEA;ISO;ISS

UNIPROTKB|F1P349 ERAL1 "GTPase Era, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 5.4e-31, Sum P(2) = 5.4e-31
 Identities = 45/141 (31%), Positives = 79/141 (56%)

Query:   284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERL 343
             K  P ++ IFM + L G  +  L QYL+ QA   PW      ++ +    I   ++RE++
Sbjct:   318 KGWPHFQDIFMLAALNGEEVDTLKQYLLMQAKPGPWEFHSRVLTSQSPHEICDNIIREKI 377

Query:   344 LDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEAN 403
             L+++  E+PY +      W++   G L I Q+L+  + S + +L+G+ G+ I RI  EA 
Sbjct:   378 LEYLPLEVPYGVTQMTELWEEGPSGELIIVQNLVVPRKSHKLMLIGRRGALISRIAQEAG 437

Query:   404 EELRSIFKRDVHLILQVRLKT 424
             ++L +IF  D+ L L+V +K+
Sbjct:   438 QDLMNIFLCDIRLKLKVEVKS 458

GO:0005525 "GTP binding" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0043024 "ribosomal small subunit binding" evidence=IEA

MGI|MGI:1889295 Eral1 "Era (G-protein)-like 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 222 (83.2 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
 Identities = 45/136 (33%), Positives = 76/136 (55%)

Query:   287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDH 346
             P ++ IFM S L    +  L QYL+ QA   PW      ++ +  + I    +RE+LL++
Sbjct:   300 PYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEEICANKIREKLLEY 359

Query:   347 VHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEEL 406
             + +E+PY ++ + + W++   G L I+Q+L+  K S  +IL+G+ G  I +I  E   +L
Sbjct:   360 LPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVGRDL 419

Query:   407 RSIFKRDVHLILQVRL 422
               IF  DV + L V+L
Sbjct:   420 MDIFHCDVLIRLSVKL 435

GO:0000028 "ribosomal small subunit assembly" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019843 "rRNA binding" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043024 "ribosomal small subunit binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82626	ERG_ANTMA	No assigned EC number	0.6542	0.9787	0.9810	N/A	no
O82653	ERG_ARATH	No assigned EC number	0.6247	0.9976	0.9679	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030112001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (423 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	rps3	SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)							•		0.595

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	2e-65
COG1159	298	COG1159, Era, GTPase [General function prediction	2e-62
cd04163	168	cd04163, Era, E	2e-51
PRK15494	339	PRK15494, era, GTPase Era; Provisional	8e-39
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	3e-36
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-20
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	1e-18
cd00880	161	cd00880, Era_like, E	2e-18
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	4e-17
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	6e-16
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	6e-16
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	3e-13
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	9e-11
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	1e-10
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	2e-10
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-10
cd01898	170	cd01898, Obg, Obg GTPase	5e-10
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	6e-10
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	1e-09
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	3e-09
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	5e-09
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	1e-08
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	2e-08
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	5e-08
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	9e-08
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	1e-07
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	2e-07
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	2e-07
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	3e-07
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	3e-07
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	1e-06
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-06
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-06
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	2e-06
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	2e-06
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	3e-06
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	5e-06
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	5e-06
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	9e-06
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	1e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	1e-05
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	3e-05
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	4e-05
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	5e-05
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	5e-05
PRK12296	500	PRK12296, obgE, GTPase CgtA; Reviewed	7e-05
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	9e-05
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	1e-04
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	2e-04
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	2e-04
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	2e-04
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	2e-04
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	6e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	0.001
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	0.001
pfam08477	116	pfam08477, Miro, Miro-like protein	0.002
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	0.002
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	0.002
pfam07650	77	pfam07650, KH_2, KH domain	0.004

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score =  210 bits (538), Expect = 2e-65
 Identities = 89/293 (30%), Positives = 155/293 (52%), Gaps = 20/293 (6%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF-D 193
              KS  V I+G PN GKS+++N +VG K++ VS K  TT H + G++T+ D QI IF D
Sbjct: 1   MGFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQI-IFVD 59

Query: 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ 253
           TPG+   K        +   ++AWS++   ++++ V D    +   D  ++  +      
Sbjct: 60  TPGIHKPK----RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKL------ 109

Query: 254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
              K   +L +NK+DLV  K++LL + E+   L  +  I   S LKG  +  L   + + 
Sbjct: 110 KKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKY 169

Query: 314 AVQRPW--SEDPLT-MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSL 370
             + P    ED +T   E  +   + E++RE+LL  +  E+PYS+   +  +++   G +
Sbjct: 170 LPEGPPYYPEDQITDRPERFL--AA-EIIREKLLRLLGDELPYSVAVEIEKFEE--RGLV 224

Query: 371 RIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           RIE  +   + SQ+ I++GK G+ + +IG EA +++  +  + V L L V++K
Sbjct: 225 RIEATIYVERDSQKGIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELWVKVK 277

Length = 292

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score =  203 bits (518), Expect = 2e-62
 Identities = 84/287 (29%), Positives = 154/287 (53%), Gaps = 10/287 (3%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            KS  V IIG PN GKS+++N +VG K++ VS K  TT + + G++T  + QI   DTPG
Sbjct: 4   FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPG 63

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
           +   K    H   ++  ++A SA+   ++++ V D        D  ++  +++       
Sbjct: 64  IHKPK----HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT------ 113

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316
           K   +L +NK+D V  K  LLK+    K L  ++ I   S LKG  +  L + + E   +
Sbjct: 114 KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173

Query: 317 RPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHL 376
            PW      +++   + ++ E++RE+LL  + +E+P+S+   + ++++   G L+I   +
Sbjct: 174 GPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATI 233

Query: 377 ITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
              + SQ+ I++GKNG+ I +IG  A +++  +    V+L L V++K
Sbjct: 234 YVERESQKGIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVK 280

Length = 298

>gnl|CDD|206726 cd04163, Era, E

 Score =  170 bits (433), Expect = 2e-51
 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 10/178 (5%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            KS  V IIG PN GKS+++N +VG K++ VS K  TT + + G+ T  D QI   DTPG
Sbjct: 1   FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPG 60

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
           +   K     K  +  V++AWSA+   ++++ V D    +   D  ++ L+++       
Sbjct: 61  IHKPK----KKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKS------ 110

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
           K   +L +NK+DLV  K+DLL + E+ K L  +  IF  S LKG  +  L +Y++E  
Sbjct: 111 KTPVILVLNKIDLVKDKEDLLPLLEKLKELHPFAEIFPISALKGENVDELLEYIVEYL 168

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score =  142 bits (359), Expect = 8e-39
 Identities = 91/294 (30%), Positives = 167/294 (56%), Gaps = 18/294 (6%)

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
           K  +QK+V+V IIG PN+GKS+++N ++G K++ V+ K  TT   + G++T  DTQ+ ++
Sbjct: 46  KMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILY 105

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DTPG+   K        K  V  AWS+++  ++++++ D    L S D     +++++  
Sbjct: 106 DTPGIFEPKGSLE----KAMVRCAWSSLHSADLVLLIID---SLKSFDDITHNILDKLRS 158

Query: 253 -QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM 311
               P    +  +NK+D+ +K  + +K      H      +F  S L G  +  L +Y+ 
Sbjct: 159 LNIVP----IFLLNKIDIESKYLNDIKAFLTENHPDSL--LFPISALSGKNIDGLLEYIT 212

Query: 312 EQAVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGS 369
            +A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ +E+PY +  +   W+DL+D S
Sbjct: 213 SKAKISPWLYAEDDIT--DLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKS 270

Query: 370 LRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           ++I Q ++ ++ S + I++GKNGSKI  IG ++  ++   F   VHL L V+++
Sbjct: 271 VKINQVIVVSRESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVR 324

Length = 339

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score =  133 bits (337), Expect = 3e-36
 Identities = 75/280 (26%), Positives = 136/280 (48%), Gaps = 12/280 (4%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS+++N + G K++  S K  TT + + G+ T   +QI   DTPG    K
Sbjct: 3   VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
               H   ++ ++ A SA+   ++++ V D           V+  ++ +      K+  V
Sbjct: 63  ----HSLNRLMMKEARSAIGGVDLILFVVDS-DQWNGDGEFVLTKLQNL------KRPVV 111

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
           L  NK+D   K K L  + +       ++ I   S L G     L  ++     + P+  
Sbjct: 112 LTRNKLDNKFKDKLLPLIDKYAILED-FKDIVPISALTGDNTSFLAAFIEVHLPEGPFRY 170

Query: 322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
               ++++  +    E++RE+++ +  +EIP+S+   +        G L+I   +   + 
Sbjct: 171 PEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERE 230

Query: 382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVR 421
           SQ+KI++GKNGS I  IG+ A +++  +F  DV L L V+
Sbjct: 231 SQKKIIIGKNGSMIKAIGIAARKDILELFDCDVFLELFVK 270

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V ++G PN GKS++IN + G KVA VS    TT   +LGV+     QI + DTPGL+   
Sbjct: 2   VALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVL-GLGRQIILVDTPGLI--- 57

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
            G S             A+   +++++V D    LT  D  ++  +E++      K+  +
Sbjct: 58  EGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLP-----KKPII 112

Query: 262 LCMNK 266
           L +NK
Sbjct: 113 LVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLN 200
            ++G    GKSS++N ++G +V  VS    TT    + V    K   ++ + DTPG  L+
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPG--LD 58

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260
           + G        R E A   +   +++++V D     +  D++++ L     +  P     
Sbjct: 59  EFGGLG-----REELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPI---- 109

Query: 261 VLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
           +L  NK+DL+ +++    +  +         +F  S   G G+  L + L+E
Sbjct: 110 ILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 87.1 bits (217), Expect = 1e-18
 Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 29/202 (14%)

Query: 117 LLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176
           LL A LE   EEEEE +EED   + + IIG PN GKS+++N ++G +   VS    TT  
Sbjct: 151 LLDAILELLPEEEEEEEEED-GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD 209

Query: 177 EVLGVMTKADTQICIFDTPGL--------MLNKSGYSHKDVKVRVESAWSAVNLFEVLMV 228
            +     +   +  + DT G+         + K  YS       V     A+   +V+++
Sbjct: 210 SIDIPFERNGKKYTLIDTAGIRRKGKVTEGVEK--YS-------VLRTLKAIERADVVLL 260

Query: 229 VFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV----AEQFK 284
           V D    +T  D R+  L    GK        V+ +NK DLV  +K   +       +  
Sbjct: 261 VLDATEGITEQDLRIAGLALEAGKAL------VIVVNKWDLVKDEKTREEFKKELRRKLP 314

Query: 285 HLPGYERIFMTSGLKGAGLKAL 306
            L  +  I   S L G G+  L
Sbjct: 315 FLD-FAPIVFISALTGQGVDKL 335

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNK 201
            I G PN GKSS++N ++G  V  VS    TT   V           + + DTPGL   +
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGL-DEE 59

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
            G        RVE A    +  +++++V D        ++++  L ER        +  +
Sbjct: 60  GGLGR----ERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRER-------GKPVL 108

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
           L +NK+DLV + ++   + E+   L     +   S L G G+  L + + E  
Sbjct: 109 LVLNKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 82.6 bits (205), Expect = 4e-17
 Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 13/196 (6%)

Query: 116 ALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT 175
            LL A LE    +EEE +EE+   + + IIG PN GKSS+IN ++G +   VS    TT 
Sbjct: 155 DLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR 214

Query: 176 HEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235
             +     +   +  + DT G +  K   +    K  V     A+   +V+++V D    
Sbjct: 215 DSIDIEFERDGRKYVLIDTAG-IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG 273

Query: 236 LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-----KVAEQFKHLPGYE 290
           ++  D R+  LIE  G+        V+ +NK DLV + +  +     K+  +   L  + 
Sbjct: 274 ISEQDLRIAGLIEEAGRGI------VIVVNKWDLVEEDEATMEEFKKKLRRKLPFL-DFA 326

Query: 291 RIFMTSGLKGAGLKAL 306
            I   S L G GL  L
Sbjct: 327 PIVFISALTGQGLDKL 342

Length = 444

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 74.8 bits (185), Expect = 6e-16
 Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 13/174 (7%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
             + + IIG PN GKSS++N ++G +   VS    TT   +         +  + DT G+
Sbjct: 1   DPIKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTRDSIDVPFEYDGQKYTLIDTAGI 60

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
                     + K  V     A+   +V+++V D    +T  D R+  LI   GK     
Sbjct: 61  RKKGKVTEGIE-KYSVLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKAL--- 116

Query: 258 QKRVLCMNKVDLVTKKKDLLK-----VAEQFKHLPGYERIFMTSGLKGAGLKAL 306
              ++ +NK DLV K +  +K     +  +   L     +F  S L G G+  L
Sbjct: 117 ---IIVVNKWDLVEKDEKTMKEFEKELRRKLPFLDYAPIVF-ISALTGQGVDKL 166

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 78.9 bits (196), Expect = 6e-16
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query: 117 LLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176
           LL A LE   EEEEE  +E+ + + + IIG PN GKSS+IN ++G +   VS    TT  
Sbjct: 153 LLDAILEELPEEEEE--DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRD 210

Query: 177 EVLGVMTKADTQICIFDTPGLMLNKSG--------YSHKDVKVRVESAWSAVNLFEVLMV 228
            +     +   +  + DT G+   + G        YS       V     A+   +V+++
Sbjct: 211 SIDTPFERDGQKYTLIDTAGIR--RKGKVTEGVEKYS-------VIRTLKAIERADVVLL 261

Query: 229 VFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLK--VAEQFKH 285
           V D    +T  D R+  L    G+        V+ +NK DLV +K  +  K  +  +   
Sbjct: 262 VIDATEGITEQDLRIAGLALEAGRAL------VIVVNKWDLVDEKTMEEFKKELRRRLPF 315

Query: 286 LPGYERIFMTSGLKGAGLKAL 306
           L  Y  I   S L G G+  L
Sbjct: 316 LD-YAPIVFISALTGQGVDKL 335

Length = 435

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 70.7 bits (174), Expect = 3e-13
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 37/221 (16%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS------VAVGIIGAPNAGKSS 154
           F EE+ E     L    ++  LE    E +E+    ++       + V IIG PN GKSS
Sbjct: 177 FPEEDIE----ELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSS 232

Query: 155 IINYMVGTKVAAVSRKTNT--TTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDV-- 209
           ++N ++G   A V   T+   TT +V+      +   + + DT G+          DV  
Sbjct: 233 LLNALLGRDRAIV---TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE------TDDVVE 283

Query: 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269
           ++ +E A  A+   ++++ V D  + L   D  +I L+       P K+  ++ +NK DL
Sbjct: 284 RIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELL-------PKKKPIIVVLNKADL 336

Query: 270 VTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
           V+K +      E  K   G   I   S   G GL AL + +
Sbjct: 337 VSKIEL-----ESEKLANGD-AIISISAKTGEGLDALREAI 371

Length = 454

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 108 RKHRALAKALLQAALERQEEEEEEVKEE--DQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165
            K R   K + +A  +  EE+ + +K++   ++ + VG++G PN GKS++IN ++G KVA
Sbjct: 99  AKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVA 158

Query: 166 AVSRKTNTTTH--EVLGVMTKADTQICIFDTPGLMLNKS 202
             S +  TT     +     K D  I + DTPG++  K 
Sbjct: 159 KTSNRPGTTKGIQWI-----KLDDGIYLLDTPGIIPPKF 192

Length = 322

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 14/173 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS++ N + G ++A VS     T   + G       +  + DT GL    
Sbjct: 6   VAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD 65

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                + ++ +   A    ++  +L VV D    +T  D  + +++ R  K        +
Sbjct: 66  EDELQELIREQALIAIEEADV--ILFVV-DGREGITPADEEIAKILRRSKK------PVI 116

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
           L +NK+D     K      E F  L G+      S   G G+  L   ++E  
Sbjct: 117 LVVNKID---NLKAEELAYE-FYSL-GFGEPVPISAEHGRGIGDLLDAVLELL 164

Length = 444

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 36/179 (20%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS------RKTNTTTHEVLGVMTKADTQICIFD 193
           + V I G PN GKSS++N + G   A VS      R       ++ G+  +      + D
Sbjct: 4   IKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLGGIPVR------LID 57

Query: 194 TPGLMLNKSGYSHKDV--KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251
           T GL         +D   K+ +E A  A+   +++++V D    L   D  ++ L     
Sbjct: 58  TAGLR------ETEDEIEKIGIERAREAIEEADLVLLVVDASEGLDEEDLEILEL----- 106

Query: 252 KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
              P K+  ++ +NK DL++  + + ++          + I   S   G G+  L + L
Sbjct: 107 ---PAKKPVIVVLNKSDLLSDAEGISELNG--------KPIIAISAKTGEGIDELKEAL 154

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 16/173 (9%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGL 197
           + + I+G PN GKS+++N ++G K++    K  TT + V  V+ +     +  + DT G 
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
                 Y     ++   +  S++ +F+++++V DV   L    ++ I         A   
Sbjct: 62  ED----YD-AIRRLYYRAVESSLRVFDIVILVLDVEEILE-KQTKEII------HHAESG 109

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
              +L  NK+DL   K  L             E I   S   G  + +  + +
Sbjct: 110 VPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 57.8 bits (141), Expect = 5e-10
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 65/202 (32%)

Query: 142 VGIIGAPNAGKSSIINYMVG--TKVAAVSRKTN---TTTHEVLGVMTKADTQICIF-DTP 195
           VG++G PNAGKS++++ +     K+A      +   TT    LGV+   D +  +  D P
Sbjct: 3   VGLVGLPNAGKSTLLSAISNAKPKIA------DYPFTTLVPNLGVVRVDDGRSFVIADIP 56

Query: 196 GLMLNKS---GYSHKDVKVRVESAWSAVNLF-------EVLMVVFDVHRHLTSPDS---- 241
           GL+   S   G  H+               F        VL+ V D    L+  D     
Sbjct: 57  GLIEGASEGKGLGHR---------------FLRHIERTRVLLHVID----LSGEDDPVED 97

Query: 242 -RVIR---------LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291
              IR         L E+          R++ +NK+DL+  ++   K+ E  K L G + 
Sbjct: 98  YETIRNELEAYNPGLAEK---------PRIVVLNKIDLLDAEERFEKLKELLKELKGKK- 147

Query: 292 IFMTSGLKGAGLKALTQYLMEQ 313
           +F  S L G GL  L + L + 
Sbjct: 148 VFPISALTGEGLDELLKKLAKL 169

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 57.4 bits (140), Expect = 6e-10
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 15/170 (8%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           I+G PN GKS++ N + G + A VS     T     G       +  + DT G+  +  G
Sbjct: 2   IVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGIEPDDEG 61

Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263
            S + ++ + E A    ++  +L VV D    LT  D  + + + +  K        +L 
Sbjct: 62  ISKE-IREQAEIAIEEADV--ILFVV-DGREGLTPADEEIAKYLRKSKK------PVILV 111

Query: 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
           +NK+D     K+  + AE F  L G+      S   G G+  L   ++E 
Sbjct: 112 VNKID---NIKEEEEAAE-FYSL-GFGEPIPISAEHGRGIGDLLDAILEL 156

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 42/197 (21%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV--------LG-VMTKADTQICIF 192
           +GI G  NAGKSS+IN + G  +A VS    TTT  V        LG V+        + 
Sbjct: 9   IGIFGRRNAGKSSLINALTGQDIAIVSDVPGTTTDPVYKAMELLPLGPVV--------LI 60

Query: 193 DTPGLMLNKSGYSHKDV----KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           DT GL          D     ++RVE     ++  ++ ++V D        +  +I  ++
Sbjct: 61  DTAGL---------DDEGELGELRVEKTREVLDKTDLALLVVDAGVGPGEYELELIEELK 111

Query: 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308
                       ++ +NK+DL  +  +L K+ ++F    G   IF  S L G G+  L +
Sbjct: 112 ERKI------PYIVVINKIDLGEESAELEKLEKKF----GLPPIF-VSALTGEGIDELKE 160

Query: 309 YLMEQAVQRPWSEDPLT 325
            ++E      + E  + 
Sbjct: 161 AIIELL-PEDFEEPTIV 176

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 20/198 (10%)

Query: 118 LQAALERQEEEEEEVKEEDQ-----KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172
           L   L     E +++    +         + I+G+PN GKSS++N ++    A VS    
Sbjct: 177 LNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG 236

Query: 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
           TT   V G        I + DT G+  +         ++ +E ++ A+   ++++ V D 
Sbjct: 237 TTRDVVEGDFELNGILIKLLDTAGIREHADFVE----RLGIEKSFKAIKQADLVIYVLDA 292

Query: 233 HRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292
            + LT  D  +I L +        K+  +L +NK+DL     +        K L      
Sbjct: 293 SQPLTKDDFLIIDLNKS-------KKPFILVLNKIDLKINSLEFFV---SSKVLNSSNLS 342

Query: 293 FMTSGLKGAGLKALTQYL 310
                +K A +  LTQ +
Sbjct: 343 AKQLKIK-ALVDLLTQKI 359

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 57.5 bits (140), Expect = 5e-09
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS++ N + G + A VS     T     G       +  + DT G+  + 
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD 61

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
            G   K ++ + E A    ++  +L VV D    LT  D  + + + + GK        +
Sbjct: 62  DGLD-KQIREQAEIAIEEADV--ILFVV-DGREGLTPEDEEIAKWLRKSGK------PVI 111

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
           L  NK+D   KK+D   VA +F  L G+      S   G G+  L   ++E
Sbjct: 112 LVANKID--GKKEDA--VAAEFYSL-GFGEPIPISAEHGRGIGDLLDAILE 157

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 55.9 bits (136), Expect = 1e-08
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 38/206 (18%)

Query: 125 QEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYM--VGTKVAAVSRKTN---TTTHEV 178
           +  EE  ++ E  K +A VG++G PNAGKS++I+ +     K+A      +   TT    
Sbjct: 143 EPGEERWLRLE-LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA------DYPFTTLVPN 195

Query: 179 LGVMTKADTQICIF-DTPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234
           LGV+   D +  +  D PGL+   S   G  H+ +K  +E          VL+ + D   
Sbjct: 196 LGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK-HIERT-------RVLLHLID--- 244

Query: 235 HLTSPDSR----VIRLIERMGKQAPPK---QKRVLCMNKVDLVTKKKDLLKVAEQFKHLP 287
            ++  D         +I    K+  P+   + R++ +NK+DL+  +++L ++ ++ K   
Sbjct: 245 -ISPEDGSDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD-EEELEELLKELKEAL 302

Query: 288 GYERIFMTSGLKGAGLKALTQYLMEQ 313
           G   +F  S L G GL  L   L E 
Sbjct: 303 GKP-VFPISALTGEGLDELLYALAEL 327

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
           +G++G PN GKSS+IN +VG+K  +VS     T H     +      I + D PGL+ 
Sbjct: 85  IGLVGYPNVGKSSLINALVGSKKVSVSSTPGKTKHFQTIFLEP---GITLCDCPGLVF 139

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 53.9 bits (131), Expect = 5e-08
 Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 60/199 (30%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSR-KTN------TTTHEVLGVMTKADTQICIF-D 193
           VG++G PNAGKS++I        +AVS  K        TT H  LGV+   D +  +  D
Sbjct: 161 VGLVGLPNAGKSTLI--------SAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIAD 212

Query: 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNL---F-------EVLMVVFDVHRHLTSPDSRV 243
            PGL               +E A     L   F        +L+ + D+       D + 
Sbjct: 213 IPGL---------------IEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKT 257

Query: 244 IR---------LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294
           IR         L ++          R+L +NK+DL+ ++++  K A       G   +F+
Sbjct: 258 IRNELEKYSPELADK---------PRILVLNKIDLLDEEEEREKRAALELAALG-GPVFL 307

Query: 295 TSGLKGAGLKALTQYLMEQ 313
            S + G GL  L + L E 
Sbjct: 308 ISAVTGEGLDELLRALWEL 326

Length = 335

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 30/224 (13%)

Query: 138 KSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----TTTHEVLGVMTKADTQICIF 192
           K +A VG++G PNAGKS++++      V+A   K      TT    LGV+     +  + 
Sbjct: 157 KLLADVGLVGLPNAGKSTLLS-----AVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVV 211

Query: 193 -DTPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
            D PGL+   S   G   + ++  +E   + V L  + +   D       P      +  
Sbjct: 212 ADIPGLIEGASEGVGLGLRFLR-HIER--TRVLLHVIDLSPIDGR----DPIEDYQTIRN 264

Query: 249 RMGKQAPP--KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306
            + K +P   ++ R++ +NK+DL   +++L ++ +      G+E  ++ S L   GL  L
Sbjct: 265 ELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDEL 324

Query: 307 TQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQE 350
            + L E   +   +E     +EE      L V  E L D  H++
Sbjct: 325 LRALAELLEETK-AEAEAAEAEE------LPVEVEVLYDDEHED 361

Length = 369

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 109 KHRALAKALLQAALERQEEEEEE-VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV 167
           K+    K LL+ A +  +E E+   K    + +   ++G PN GKS++IN + G KVA V
Sbjct: 84  KNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLRAMVVGIPNVGKSTLINRLRGKKVAKV 143

Query: 168 SRKTNTTTHEVLGVM-TKADTQICIFDTPGLM 198
             K   T     G    +    I + DTPG++
Sbjct: 144 GNKPGVTR----GQQWIRIGPNIELLDTPGIL 171

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 30/171 (17%)

Query: 101 FQEEEEE----RKHRALAK--ALLQAALERQEEEEEEVKEEDQKS--------VA----- 141
            +  EEE     K++A      LL+A L    EE E+ K    KS        V      
Sbjct: 8   IKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRK---SKSGGGGSGFAVKKSGDA 64

Query: 142 -VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
            V ++G P+ GKS+++N +  TK         TT   V G++     QI + D PG++  
Sbjct: 65  TVALVGFPSVGKSTLLNKLTNTKSEVADYPF-TTLEPVPGMLEYKGAQIQLLDLPGIIEG 123

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251
            S       + R     S     +++++V DV       D  + R +E +G
Sbjct: 124 AS-----SGRGRGRQVLSVARNADLIIIVLDVFEDPHHRD-IIERELEDVG 168

Length = 365

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 29/132 (21%)

Query: 76  WDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEE 135
           W + + E+  + +    A+KGK             + + KA  +   E+ E+ +   K  
Sbjct: 69  WLKYFEEKGIKALAIN-AKKGK-----------GVKKIIKAAKKLLKEKNEKLKA--KGL 114

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------DTQI 189
             + +   I+G PN GKS++IN + G KVA V  +         GV TK          +
Sbjct: 115 LNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRP--------GV-TKGQQWIKLSDGL 165

Query: 190 CIFDTPGLMLNK 201
            + DTPG++  K
Sbjct: 166 ELLDTPGILWPK 177

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH--EVLGVMTKADTQICIFDT 194
           + S+ VG++G PN GKSS+IN +  ++   V      T    EV       D  + + D+
Sbjct: 114 KTSITVGVVGYPNVGKSSVINSLKRSRACNVGATPGVTKSMQEV-----HLDKHVKLLDS 168

Query: 195 PG 196
           PG
Sbjct: 169 PG 170

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 58/216 (26%), Positives = 89/216 (41%), Gaps = 38/216 (17%)

Query: 125 QEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTH 176
              EE E+K E  K +A VG++G PNAGKS+ I         AVS           TT  
Sbjct: 145 TPGEERELKLE-LKLLADVGLLGLPNAGKSTFIR--------AVSAAKPKVADYPFTTLV 195

Query: 177 EVLGVMTKADTQ-ICIFDTPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
             LGV+   D +   + D PGL+   S   G   + +K  +E     V L  + +   D 
Sbjct: 196 PNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK-HLER--CRVLLHLIDIAPID- 251

Query: 233 HRHLTSPDSRVI---RLIERMGKQAPPK---QKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286
                   S  +   R+I    ++  PK   + R L  NK+DL+ +++   +     + L
Sbjct: 252 -------GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL 304

Query: 287 PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED 322
                +++ S   G G+K L   LM    + P  E 
Sbjct: 305 GWEGPVYLISAASGLGVKELCWDLMTFIEENPREEA 340

Length = 390

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 50.1 bits (121), Expect = 1e-06
 Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 65/233 (27%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKE----EDQKSVAVGIIGAPNAGKSSII 156
           F EE+ E          L+  +   E      ++     +   V   I G PN GKSS++
Sbjct: 175 FPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVV--IAGRPNVGKSSLL 232

Query: 157 NYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQICIFDTPGLMLNKSGYSHK 207
           N ++G + A V   T+   TT +V+       G+  +      + DT G+          
Sbjct: 233 NALLGEERAIV---TDIAGTTRDVIEEHINLDGIPLR------LIDTAGI---------- 273

Query: 208 DVKVR----------VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
               R          +E +  A+   +++++V D    LT  D  ++        +    
Sbjct: 274 ----RETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEIL--------EELKD 321

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
           +  ++ +NK DL  +               G   I   S   G G+  L + +
Sbjct: 322 KPVIVVLNKADLTGEIDLE--------EENGKPVI-RISAKTGEGIDELREAI 365

Length = 449

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 24/90 (26%), Positives = 42/90 (46%)

Query: 115 KALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
           +    A   +  E E ++K+E   S+ + ++G    GKSS IN + G +  +VS   + T
Sbjct: 7   QFFPDATQTKLHELEAKLKKELDFSLTILVLGKTGVGKSSTINSIFGERKVSVSAFQSET 66

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGY 204
                   T    ++ I DTPGL+ ++   
Sbjct: 67  LRPREVSRTVDGFKLNIIDTPGLLESQDQR 96

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 20/158 (12%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---NTTTHEVLGVMTKADTQICIFD 193
            K   + ++G    GK++++N +VG +       T         +         Q  ++D
Sbjct: 3   MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQ--LWD 60

Query: 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNL-FEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           T G                  S           +++V+D     +S +      +E + +
Sbjct: 61  TAGQ-------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELT-EEWLEELRE 106

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
            AP     +L  NK+DL  ++    ++  Q        
Sbjct: 107 LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLL 144

Length = 219

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 26/213 (12%)

Query: 126 EEEEEEVKEED----------QKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
           +E +E++ E             K+V  V I+G PN GKS+++N ++G + A V      T
Sbjct: 251 DEGDEDLLEGSGFVAGDEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVT 310

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234
              V      A T   + DT G   +  G     +      A  AV+L + ++ V D   
Sbjct: 311 RDRVSYDAEWAGTDFKLVDTGGWEADVEGI-DSAI---ASQAQIAVSLADAVVFVVDGQV 366

Query: 235 HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294
            LTS D R++R++ R GK        VL +NK+D    + D    AE +K   G    + 
Sbjct: 367 GLTSTDERIVRMLRRAGKPV------VLAVNKIDDQASEYD---AAEFWKL--GLGEPYP 415

Query: 295 TSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMS 327
            S + G G+  L    ++       +   LT S
Sbjct: 416 ISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPS 448

Length = 712

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDT 194
            D K V VG++G P  GKSSIIN + G   A+ S    +  +     + + D++I + DT
Sbjct: 95  IDGKPVIVGVVGYPKVGKSSIINALKGRHSASTSPIPGSPGYTKGIQLVRIDSKIYLIDT 154

Query: 195 PG 196
           PG
Sbjct: 155 PG 156

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 48.2 bits (116), Expect = 3e-06
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 29/127 (22%)

Query: 76  WDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEE 135
           W E + E+  + +    A+KG+             + + KA  +   E+ E  + +    
Sbjct: 72  WIEYFEEQGIKALAIN-AKKGQ-----------GVKKILKAAKKLLKEKNERRKAKGMRP 119

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------DTQI 189
             +++   IIG PN GKS++IN + G K+A    +         GV TKA         +
Sbjct: 120 --RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRP--------GV-TKAQQWIKLGKGL 168

Query: 190 CIFDTPG 196
            + DTPG
Sbjct: 169 ELLDTPG 175

Length = 287

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC 190
           ++KEED  S+ + ++G    GKSS +N ++G ++A VS   +     ++   T+A   + 
Sbjct: 30  KLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLN 89

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV--FDVHRHLTSPDSRVIRLI 247
           I DTPGL+  + GY + D  V +   +      +VL+ V   D +R + + D +VIR I
Sbjct: 90  IIDTPGLI--EGGYIN-DQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAI 144

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 38/186 (20%)

Query: 142 VGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTH----EVLGVMTKADTQICIFDTPG 196
           V   G  N GKSS+IN +   K +A  S+    T       V         +  + D PG
Sbjct: 2   VAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNV-------GDKFRLVDLPG 54

Query: 197 LMLNKSGYSHKDVKVRVESAWSAV---------NLFEVLMVVFDVHRHLTSPDSRVIRLI 247
                 GY+    +VR +  W  +         NL  V++++ D     T  D  ++  +
Sbjct: 55  Y-----GYAKVSKEVREK--WGKLIEEYLENRENLKGVVLLI-DARHGPTPIDLEMLEFL 106

Query: 248 ERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK 304
           E +G   P     ++ + K D + K    K L K+ E+         + + S  KG G+ 
Sbjct: 107 EELGI--PF----LIVLTKADKLKKSELAKVLKKIKEELNLFNILPPVILFSSKKGTGID 160

Query: 305 ALTQYL 310
            L   +
Sbjct: 161 ELRALI 166

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 22/161 (13%)

Query: 117 LLQAALERQEEEEEEVKEED-QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT 175
           LL A L    E           + VA  ++G PN GKSS++N + G + + V     TT 
Sbjct: 190 LLDAVLAALPEVPRVGSASGGPRRVA--LVGKPNVGKSSLLNKLAGEERSVVDDVAGTTV 247

Query: 176 HEVLGVMTKADTQICIFDTPGL---MLNKSG---YSHKDVKVRVESAWSAVNLFEVLMVV 229
             V  ++          DT GL   +   SG   Y+     +R  +A  A    EV +V+
Sbjct: 248 DPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYA----SLRTHAAIEAA---EVAVVL 300

Query: 230 FDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270
            D    ++  D RV+ ++   G+        VL  NK DLV
Sbjct: 301 IDASEPISEQDQRVLSMVIEAGRAL------VLAFNKWDLV 335

Length = 472

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 23/180 (12%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL---M 198
           V ++G PN GKSS++N +   + A V+    TT   V  ++          DT G+    
Sbjct: 453 VALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQ 512

Query: 199 LNKSG---YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
              +G   YS     +R ++A       E+ + +FD  + ++  D +V+ +    G+   
Sbjct: 513 HKLTGAEYYSS----LRTQAAIERS---ELALFLFDASQPISEQDLKVMSMAVDAGRAL- 564

Query: 256 PKQKRVLCMNKVDLVTK-KKDLLK--VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
                VL  NK DL+ + ++  L+     +F  +    R+ + S   G     L   + E
Sbjct: 565 -----VLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL-SAKTGWHTNRLAPAMQE 618

Length = 712

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 59/290 (20%), Positives = 108/290 (37%), Gaps = 52/290 (17%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            K + V ++G PN GK+++ N + G     V      T  +  G +     +I I D PG
Sbjct: 1   MKKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPG 59

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNL-----FEVLMVVFD---VHRHLTSPDSRVIRLIE 248
              + + YS +D KV       A +       ++++ V D   + R+L       ++L+E
Sbjct: 60  -TYSLTAYS-EDEKV-------ARDFLLEGKPDLIVNVVDATNLERNL----YLTLQLLE 106

Query: 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAGLKAL 306
            +G         +L +N +D   K+   + + +  K L  P    +  T   +G GL+ L
Sbjct: 107 -LGI------PMILALNMIDEAKKRGIRIDIEKLSKLLGVP----VVPTVAKRGEGLEEL 155

Query: 307 TQYLMEQAVQ--RPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKD 364
            + ++E A     P   D     EE +K +       R L     E    +E        
Sbjct: 156 KRAIIELAESKTTPREVDYGEEIEEEIKELEALSEDPRWLAIKLLEDDELVEAV------ 209

Query: 365 LRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDV 414
           L++   R+E         +    + +    +  I       +  I +  V
Sbjct: 210 LKEPEKRVE---------ELLEELSEEEGHLLLIADARYALIERILRSVV 250

Length = 653

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           V ++G P+ GKS++++ +  TK    + +  TT   V GVM     +I + D PG+
Sbjct: 3   VALVGFPSVGKSTLLSKLTNTKSEVAAYEF-TTLTCVPGVMEYKGAKIQLLDLPGI 57

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 119 QAALERQEEEEEEVK-EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE 177
           Q  L+ + E  ++    + +K + VG++G PN GKSS IN ++      V     TT  +
Sbjct: 70  QGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGSIPGTTKLQ 129

Query: 178 VLGVMTKADTQICIFDTPGL 197
                 K D +I ++DTPG+
Sbjct: 130 QD---VKLDKEIYLYDTPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 45.0 bits (108), Expect = 5e-05
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--THEVLGVMTKADTQICIFDTPGLML 199
           V I+G PN GKS++ N + G + A V+     T       G       +  + DT G+  
Sbjct: 4   VAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIY--GEAEWLGREFILIDTGGIEP 61

Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
           +  G+  + ++ + E A    ++  +L VV D    LT  D  + +++ +  K       
Sbjct: 62  DDDGFEKQ-IREQAELAIEEADV--ILFVV-DGRAGLTPADEEIAKILRKSNK------P 111

Query: 260 RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306
            +L +NKVD      D    A +F  L G    +  S   G G+  L
Sbjct: 112 VILVVNKVD----GPDEEADAYEFYSL-GLGEPYPISAEHGRGIGDL 153

Length = 435

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV 167
           D+K ++VG IG PN GKSS+IN +   KV  V
Sbjct: 99  DKKQISVGFIGYPNVGKSSVINTLRSKKVCKV 130

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 20/97 (20%)

Query: 112 ALAKALLQA---ALERQEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAV 167
           ALA    +A   AL  +  EE ++  E  KSVA VG++G P+AGKSS+I        +A+
Sbjct: 129 ALASKARKAPGFALLGEPGEERDLVLE-LKSVADVGLVGFPSAGKSSLI--------SAL 179

Query: 168 SR---KTN----TTTHEVLGVMTKADTQICIFDTPGL 197
           S    K      TT    LGV+   DT+  + D PGL
Sbjct: 180 SAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGL 216

Length = 500

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 44/201 (21%)

Query: 142 VGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTTHE-------VLGVMTK--AD 186
           VG+IG  + GK+++   ++        +        +T   E         GV+      
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61

Query: 187 TQICIFDTPGLMLNKSGYSHKD-VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIR 245
            +I   DTPG         H+D  K  V     A    +  ++V D +  +       + 
Sbjct: 62  RRINFIDTPG---------HEDFSKETVRGLAQA----DGALLVVDANEGVEPQTREHLN 108

Query: 246 LIERMGKQAPPKQKRVLCMNKVDLV--TKKKDLLKVAEQFKHLPGYE-------RIFMTS 296
           +    G         ++ +NK+D V      ++L+  ++   L G+         I   S
Sbjct: 109 IALAGGL------PIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPIS 162

Query: 297 GLKGAGLKALTQYLMEQAVQR 317
            L G G++ L   ++E     
Sbjct: 163 ALTGEGIEELLDAIVEHLPPP 183

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 13/168 (7%)

Query: 102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161
            ++E E +            L+ ++  E E  E     V V ++G PN GKS+++N ++G
Sbjct: 2   DDDEAEMRADGTWADESDWELDDEDLAELEAAEGGPLPV-VAVVGRPNVGKSTLVNRILG 60

Query: 162 TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV-ESAWSAV 220
            + A V      T   V         +  + DT G   +  G     ++  V E A  A+
Sbjct: 61  RREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG-----LQASVAEQAEVAM 115

Query: 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268
              + ++ V D     T+ D  V R++ R GK        +L  NKVD
Sbjct: 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPV------ILAANKVD 157

Length = 472

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 144 IIGAPNAGKSSIINYMVG-----TKVAAVSRKTNTTTHEVLG-VMTKADTQICIFDTPGL 197
           ++G  N GKSS+IN ++        V   S    TT    L  +    D    ++DTPG+
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT----LDLIEIPLDDGHSLYDTPGI 214

Query: 198 M 198
           +
Sbjct: 215 I 215

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 17/91 (18%)

Query: 225 VLMVVFDVHRHLTSPDSRVIRLIERM-----GKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279
            +++VF +     +      RL++R           P    V+ +NK DLV   ++L ++
Sbjct: 5   QVLIVFSLKEPFFNL-----RLLDRYLVAAEASGIEP----VIVLNKADLVD-DEELEEL 54

Query: 280 AEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
            E ++ L GY  +   S   G GL  L + L
Sbjct: 55  LEIYEKL-GY-PVLAVSAKTGEGLDELRELL 83

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 15/82 (18%)

Query: 124 RQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGT---KVAAVSRKTN----TT 174
           +  E  +E++E  + + SV VG  G    GKS+++N ++         +S K      TT
Sbjct: 71  KTGEGLDELRELLKGKTSVLVGQSGV---GKSTLLNALLPELVLATGEISEKLGRGRHTT 127

Query: 175 THEVLGVMTKADTQICIFDTPG 196
           TH  L           I DTPG
Sbjct: 128 THREL-FPLPGGG--LIIDTPG 146

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 53/196 (27%)

Query: 142 VGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDT 194
           + ++G PN GK+++ N + G    V       V +K         G       +I I D 
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKE--------GTFKYKGYEIEIVDL 54

Query: 195 PGLMLNKSGYSHKDVKVRVESAWSAVN--LFE---VLMVVFDV-----HRHLTSPDSRVI 244
           PG   + S YS ++ KV       A +  L E   V++ V D      + +LT      +
Sbjct: 55  PG-TYSLSPYS-EEEKV-------ARDYLLEEKPDVIINVVDATNLERNLYLT------L 99

Query: 245 RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAG 302
           +L+E +G         V+ +N +D   KK   + + +  + L  P    +  TS  KG G
Sbjct: 100 QLLE-LGI------PVVVALNMMDEAEKKGIKIDIKKLSELLGVP----VVPTSARKGEG 148

Query: 303 LKALTQYLMEQAVQRP 318
           +  L   ++E A  + 
Sbjct: 149 IDELKDAIIEVAEGKV 164

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 130 EEVKEEDQKSVAVGIIGAPNAGKSSIIN------YMVGTKVAAVSRKT-----NTTTHEV 178
           EE+K+  +    V ++GA N GKS++IN             A V R T      TT    
Sbjct: 116 EEIKKLAKYRGDVYVVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTT---- 171

Query: 179 LGVMT-KADTQICIFDTPGL 197
           LG++         ++DTPG+
Sbjct: 172 LGLIKIPLGEGKKLYDTPGI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 55/185 (29%)

Query: 144 IIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
           ++G PN GK+++ N + G   KV       V +K         G       +I I D PG
Sbjct: 2   LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKE--------GEFKLGGKEIEIVDLPG 53

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNL-----FEVLMVVFD---VHRHL--TSPDSRVIRL 246
              + + YS +D KV       A +       ++++ V D   + R+L  T      ++L
Sbjct: 54  -TYSLTPYS-EDEKV-------ARDFLLGEEPDLIVNVVDATNLERNLYLT------LQL 98

Query: 247 IERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMTSGLKGAGL 303
           +E +G         V+ +N +D   K+    DL K++E    +P    +  TS  KG G+
Sbjct: 99  LE-LGL------PVVVALNMIDEAEKRGIKIDLDKLSELLG-VP----VVPTSARKGEGI 146

Query: 304 KALTQ 308
             L  
Sbjct: 147 DELLD 151

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           + ++G  +AGKS+++N ++G +V    V+  T   T    G+       + + DTPGL
Sbjct: 3   LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVLRYGL----LKGVVLVDTPGL 56

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 21/130 (16%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC-IFDTPGLMLN 200
           V +IG   +GKSS+++ +VG +      +    T  V  +    DT +  I+D  G    
Sbjct: 2   VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGG---- 57

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQ 258
                  +  + ++ A       + +++V+D    LT  +S   V RLI  +        
Sbjct: 58  -REELKFEHIIFMKWA-------DAILLVYD----LTDRESLNEVSRLIAWLPNLRKLGG 105

Query: 259 K--RVLCMNK 266
           K   +L  NK
Sbjct: 106 KIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202
           G++G PN GKS++++ +   KV   S    T    V          I I D PGL+    
Sbjct: 1   GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLDG-- 58

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDV---HRHLTSPDSRVIRLIERMGKQAPPKQK 259
             + +  +   E   + +   ++++ V D           D + +             + 
Sbjct: 59  --ASEG-RGLGEQILAHLYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKNKP 115

Query: 260 RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303
            ++  NK+D+ +  ++ LK  +  K   G   +  TS L   GL
Sbjct: 116 EMIVANKIDMAS--ENNLKRLKLDKLKRGI-PVVPTSALTRLGL 156

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 42/196 (21%)

Query: 142 VGIIGAPNAGKSSII------NYMVGTKVAAVSRKTNTTTHEVLGVMT---------KAD 186
           +GIIG  + GK+++          +  + A  +R  +    E    +T            
Sbjct: 6   IGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKK 65

Query: 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246
             I I DTPG         H D    +    S  +    ++VV D    +       + L
Sbjct: 66  RLINIIDTPG---------HVDFTKEMIRGASQADG--AILVV-DAVEGVMPQTREHLLL 113

Query: 247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ----FKHLPGYER----IFMTSGL 298
            + +G         ++ +NK+D V    +L +V E+         G+      +   S L
Sbjct: 114 AKTLGV------PIIVFINKIDRVD-DAELEEVVEEISRELLEKYGFGGETVPVVPGSAL 166

Query: 299 KGAGLKALTQYLMEQA 314
            G G+  L + L    
Sbjct: 167 TGEGIDELLEALDLYL 182

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|203707 pfam07650, KH_2, KH domain

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 350 EIPYSIEHRLIDWKDLRDGSLRIE----QHLITNKLSQRKILVGKNGSKIGRIGVEANEE 405
           EI   +   L   K      + IE    + ++  + SQ  I++GK GS I ++G E  + 
Sbjct: 1   EIREFLAVEL---KKAGISDIEIERTPNRVIVVIRTSQPGIVIGKGGSNIKKLGKELRKL 57

Query: 406 LRSIFKRDVHL 416
           +  +  + V+L
Sbjct: 58  IE-LEGKKVYL 67

Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
COG1159	298	Era GTPase [General function prediction only]	100.0
PRK15494	339	era GTPase Era; Provisional	100.0
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	100.0
PRK00089	292	era GTPase Era; Reviewed	100.0
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	100.0
PRK12298	390	obgE GTPase CgtA; Reviewed	99.94
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
COG2262	411	HflX GTPases [General function prediction only]	99.92
PRK11058	426	GTPase HflX; Provisional	99.92
COG1160	444	Predicted GTPases [General function prediction onl	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
COG0486	454	ThdF Predicted GTPase [General function prediction	99.92
COG1160	444	Predicted GTPases [General function prediction onl	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.88
PRK12299	335	obgE GTPase CgtA; Reviewed	99.88
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.87
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.86
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.86
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.86
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.86
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.86
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.85
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.85
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.85
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.85
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.85
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.85
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.85
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.85
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.85
PRK12297	424	obgE GTPase CgtA; Reviewed	99.85
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.85
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.85
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.85
PRK12296	500	obgE GTPase CgtA; Reviewed	99.84
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.84
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.84
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.84
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.84
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.84
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.84
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.84
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.84
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.84
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.84
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.84
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.83
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.83
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.83
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.83
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.83
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.83
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.83
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.83
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.83
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.83
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.83
PTZ00369	189	Ras-like protein; Provisional	99.83
PRK09602	396	translation-associated GTPase; Reviewed	99.83
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.82
COG0218	200	Predicted GTPase [General function prediction only	99.82
PLN03118	211	Rab family protein; Provisional	99.82
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.82
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.82
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.82
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.82
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.82
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.82
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.82
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.82
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.82
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.82
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.82
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.82
PRK04213	201	GTP-binding protein; Provisional	99.82
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.82
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.82
COG1163	365	DRG Predicted GTPase [General function prediction	99.82
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.82
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.82
PLN03110	216	Rab GTPase; Provisional	99.81
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.81
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.81
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.81
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.81
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.81
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.81
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.81
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.81
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.81
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.81
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.81
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.81
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.81
cd00881	189	GTP_translation_factor GTP translation factor fami	99.81
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.81
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.81
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.81
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.81
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.81
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.81
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.81
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.81
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.8
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.8
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.8
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.8
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.8
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.8
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.8
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.8
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.8
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.8
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.8
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.8
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.79
PLN03108	210	Rab family protein; Provisional	99.79
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.79
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.79
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.79
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.79
PLN00223	181	ADP-ribosylation factor; Provisional	99.79
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.79
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.79
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.79
COG1084	346	Predicted GTPase [General function prediction only	99.79
PTZ00133	182	ADP-ribosylation factor; Provisional	99.78
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.78
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	99.78
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.78
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.78
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.78
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.78
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.78
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.78
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.77
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.77
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.77
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.77
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.77
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.77
COG1161	322	Predicted GTPases [General function prediction onl	99.77
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.77
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.77
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.77
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.77
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.76
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.76
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.76
KOG0394	210	consensus Ras-related GTPase [General function pre	99.76
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.76
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.76
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.76
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.75
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.75
PRK12317	425	elongation factor 1-alpha; Reviewed	99.75
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.74
PRK05306	787	infB translation initiation factor IF-2; Validated	99.74
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.74
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.74
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.74
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.74
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.74
PRK09866	741	hypothetical protein; Provisional	99.73
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.73
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.73
KOG2484	435	consensus GTPase [General function prediction only	99.73
CHL00189	742	infB translation initiation factor 2; Provisional	99.72
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.71
COG0536	369	Obg Predicted GTPase [General function prediction	99.71
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.71
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.7
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.7
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.7
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.7
PRK12736	394	elongation factor Tu; Reviewed	99.69
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.69
CHL00071	409	tufA elongation factor Tu	99.69
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.69
PRK12735	396	elongation factor Tu; Reviewed	99.68
PRK05433	600	GTP-binding protein LepA; Provisional	99.68
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.68
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.68
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.67
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.67
PRK00049	396	elongation factor Tu; Reviewed	99.66
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.66
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.66
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.65
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.65
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.65
PRK10218	607	GTP-binding protein; Provisional	99.65
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.65
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.64
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.64
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.64
COG3596	296	Predicted GTPase [General function prediction only	99.64
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.64
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.64
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.64
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.63
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.63
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.63
KOG0395	196	consensus Ras-related GTPase [General function pre	99.62
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.62
KOG0410	410	consensus Predicted GTP binding protein [General f	99.62
PRK04004	586	translation initiation factor IF-2; Validated	99.62
PLN03126	478	Elongation factor Tu; Provisional	99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
KOG2423	572	consensus Nucleolar GTPase [General function predi	99.61
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.6
PRK12739	691	elongation factor G; Reviewed	99.6
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.59
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.59
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.58
PRK00007	693	elongation factor G; Reviewed	99.58
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.58
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.58
PTZ00141	446	elongation factor 1- alpha; Provisional	99.58
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.57
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.56
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.56
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.56
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.55
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.55
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.55
PTZ00258	390	GTP-binding protein; Provisional	99.54
KOG1145	683	consensus Mitochondrial translation initiation fac	99.54
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.54
COG1100	219	GTPase SAR1 and related small G proteins [General	99.54
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.53
PRK12289	352	GTPase RsgA; Reviewed	99.53
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.53
PRK13351	687	elongation factor G; Reviewed	99.52
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.52
COG1162	301	Predicted GTPases [General function prediction onl	99.52
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.51
PRK09601	364	GTP-binding protein YchF; Reviewed	99.5
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.5
PTZ00099	176	rab6; Provisional	99.49
PRK12288	347	GTPase RsgA; Reviewed	99.48
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.48
PLN00043	447	elongation factor 1-alpha; Provisional	99.48
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.47
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.46
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.45
COG2229	187	Predicted GTPase [General function prediction only	99.45
PLN00023	334	GTP-binding protein; Provisional	99.45
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.44
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.44
PRK12740	668	elongation factor G; Reviewed	99.43
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.43
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.43
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.43
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.42
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.41
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.41
PRK13768	253	GTPase; Provisional	99.41
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.4
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.4
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.39
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.37
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.36
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.36
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.36
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.34
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.33
PRK07560	731	elongation factor EF-2; Reviewed	99.31
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.31
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.31
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.31
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.31
PRK00098	298	GTPase RsgA; Reviewed	99.3
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.3
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.3
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.3
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.29
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.29
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.28
PTZ00416	836	elongation factor 2; Provisional	99.27
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.27
PRK14845	1049	translation initiation factor IF-2; Provisional	99.27
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.27
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.26
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.25
KOG0090	238	consensus Signal recognition particle receptor, be	99.23
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.23
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.23
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.22
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.21
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.2
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.19
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.19
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.17
PRK13796	365	GTPase YqeH; Provisional	99.17
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.16
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.16
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.15
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.15
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.14
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.14
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.14
KOG1673	205	consensus Ras GTPases [General function prediction	99.13
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.12
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.1
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.09
KOG2486	320	consensus Predicted GTPase [General function predi	99.08
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.08
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.08
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.06
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.98
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.97
PRK01889	356	GTPase RsgA; Reviewed	98.96
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.93
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.92
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.77
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.75
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.75
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.71
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.71
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.67
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.66
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.66
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.66
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.65
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.64
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.64
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.61
PF07650	78	KH_2: KH domain syndrome, contains KH motifs.; Int	98.59
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.59
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.59
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.58
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.57
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.55
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.53
PRK10416	318	signal recognition particle-docking protein FtsY;	98.51
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.51
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.48
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.47
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.42
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.42
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.4
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.39
KOG0460	449	consensus Mitochondrial translation elongation fac	98.38
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.36
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.34
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.28
PRK12289	352	GTPase RsgA; Reviewed	98.24
KOG1143	591	consensus Predicted translation elongation factor	98.24
PRK14974	336	cell division protein FtsY; Provisional	98.22
cd03112	158	CobW_like The function of this protein family is u	98.2
PRK00098	298	GTPase RsgA; Reviewed	98.19
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.19
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.17
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.11
PRK13796	365	GTPase YqeH; Provisional	98.1
PRK01889	356	GTPase RsgA; Reviewed	98.1
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.0
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.99
PRK12288	347	GTPase RsgA; Reviewed	97.94
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.93
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.93
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.9
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.9
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	97.9
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.9
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	97.9
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.9
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.87
COG0523	323	Putative GTPases (G3E family) [General function pr	97.87
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.84
cd03114	148	ArgK-like The function of this protein family is u	97.83
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.82
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.81
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.81
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.77
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.74
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.7
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.7
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.69
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.69
KOG1533	290	consensus Predicted GTPase [General function predi	97.66
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.64
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.64
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.63
PRK10867	433	signal recognition particle protein; Provisional	97.59
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.57
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.57
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.55
TIGR00959	428	ffh signal recognition particle protein. This mode	97.5
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.48
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.43
COG3523	1188	IcmF Type VI protein secretion system component Va	97.42
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.36
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.29
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.24
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.23
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.22
cd03110	179	Fer4_NifH_child This protein family's function is	97.12
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.12
KOG2484	435	consensus GTPase [General function prediction only	97.1
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.07
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.07
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	97.05
cd02036	179	MinD Bacterial cell division requires the formatio	97.04
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.95
KOG3887	347	consensus Predicted small GTPase involved in nucle	96.91
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.87
PRK13695	174	putative NTPase; Provisional	96.83
cd03111	106	CpaE_like This protein family consists of proteins	96.82
COG1161	322	Predicted GTPases [General function prediction onl	96.81
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.67
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.67
COG1162	301	Predicted GTPases [General function prediction onl	96.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.53
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.39
PHA02518	211	ParA-like protein; Provisional	96.35
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.34
PRK14737	186	gmk guanylate kinase; Provisional	96.31
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.29
KOG0781	587	consensus Signal recognition particle receptor, al	96.25
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.21
PF00004	132	AAA: ATPase family associated with various cellula	96.2
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.2
CHL00072	290	chlL photochlorophyllide reductase subunit L	96.19
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.18
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.14
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.13
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.11
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.05
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.0
PRK14738	206	gmk guanylate kinase; Provisional	95.99
cd02117	212	NifH_like This family contains the NifH (iron prot	95.93
PRK00300	205	gmk guanylate kinase; Provisional	95.92
cd02032	267	Bchl_like This family of proteins contains bchL an	95.91
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.86
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	95.81
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.75
PRK07261	171	topology modulation protein; Provisional	95.74
PRK13849	231	putative crown gall tumor protein VirC1; Provision	95.72
COG1341	398	Predicted GTPase or GTP-binding protein [General f	95.72
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.71
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.69
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	95.67
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.66
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.62
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.62
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.61
PRK08118	167	topology modulation protein; Reviewed	95.58
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	95.57
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.57
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.56
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.55
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.52
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	95.52
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.52
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.51
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.5
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.5
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	95.45
PRK08233	182	hypothetical protein; Provisional	95.44
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.43
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.4
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	95.4
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.39
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.39
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.38
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.38
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.36
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	95.36
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.34
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.32
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.31
PRK05480	209	uridine/cytidine kinase; Provisional	95.31
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.3
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.3

>COG1159 Era GTPase [General function prediction only]

Probab=100.00  E-value=1.3e-63  Score=457.89  Aligned_cols=279  Identities=30%  Similarity=0.471  Sum_probs=260.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++..|+++|.||||||||+|+|+|.+.+.++++++|||+...++++.++.|++|+||||++.++.    .....+.+.
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~----~l~~~m~~~   78 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH----ALGELMNKA   78 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch----HHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999998754    333678899


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ++..+.++|+++||+|+++++...+..+.+.++..      +.|+++++||+|...+...+.+..+.+.....|..++++
T Consensus        79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi  152 (298)
T COG1159          79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI  152 (298)
T ss_pred             HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence            99999999999999999988888888888777762      378999999999998755467888888888889899999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEE
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQH  375 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~  375 (424)
                      ||++|.|++.|.+.+.+++++++|.||++..||.+++++++|++||+++..+++|+||++.+.+++|++.+++.++|.+.
T Consensus       153 SA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~  232 (298)
T COG1159         153 SALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHAT  232 (298)
T ss_pred             eccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             EEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461          376 LITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       376 i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~  424 (424)
                      |+|+|+|||+|||||+|++||+||+.||++|+++|+|+|||+|||||++
T Consensus       233 I~Ver~sQK~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~VKVk~  281 (298)
T COG1159         233 IYVERESQKGIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVKK  281 (298)
T ss_pred             EEEecCCccceEECCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcc
Confidence            9999999999999999999999999999999999999999999999985

>PRK15494 era GTPase Era; Provisional

Probab=100.00  E-value=2.9e-55  Score=427.73  Aligned_cols=276  Identities=30%  Similarity=0.544  Sum_probs=238.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|.+|||||||+|+|++.+++.+++.++||++...+.+..++.++.||||||+..+...    ....+.+.+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~----l~~~~~r~~  125 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS----LEKAMVRCA  125 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc----HHHHHHHHH
Confidence            3567999999999999999999999999888999999998888888888899999999999754321    223456777


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      +..+..+|++++|+|+++.+...+..+.+.+...      +.|.++|+||+|+...  ...+..+.+.....+..+|++|
T Consensus       126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iS  197 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPIS  197 (339)
T ss_pred             HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEe
Confidence            7788999999999998765555444444444432      2567889999999653  2334444444444456799999


Q ss_pred             cCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEE
Q 014461          297 GLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHL  376 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i  376 (424)
                      |++|.|+++++++|.+.++++||.||+++.|+.+++++++|+|||+++..+++|+||++++.++.|++..++.++|.+.|
T Consensus       198 Aktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i  277 (339)
T PRK15494        198 ALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVI  277 (339)
T ss_pred             ccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999776789999999


Q ss_pred             EeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461          377 ITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       377 ~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~  424 (424)
                      +|+|+|||+||||++|++||+||++||++|+++|+|+|||+|||||++
T Consensus       278 ~v~~~sqk~iiiG~~g~~ik~i~~~ar~~le~~~~~~v~l~l~Vkv~~  325 (339)
T PRK15494        278 VVSRESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRE  325 (339)
T ss_pred             EECCCCceeEEEcCCcHHHHHHHHHHHHHHHHHhCCCeEEEEEEEECC
Confidence            999999999999999999999999999999999999999999999985

>TIGR00436 era GTP-binding protein Era

Probab=100.00  E-value=2.2e-54  Score=410.50  Aligned_cols=270  Identities=28%  Similarity=0.420  Sum_probs=234.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .+|+++|.||||||||+|+|++.+++.+++.++||+....+....++.++.||||||+.....    .....+.+.++..
T Consensus         1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~----~l~~~~~~~~~~~   76 (270)
T TIGR00436         1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH----SLNRLMMKEARSA   76 (270)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc----hHHHHHHHHHHHH
Confidence            369999999999999999999999988999999999988888777888999999999975421    1223345566777


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..+|++++|+|+++.... +..+...+...      +.|+++|+||+|+... ....+....+....++.+++++||++
T Consensus        77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~------~~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~v~~iSA~~  148 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQNL------KRPVVLTRNKLDNKFK-DKLLPLIDKYAILEDFKDIVPISALT  148 (270)
T ss_pred             HhhCCEEEEEEECCCCCch-HHHHHHHHHhc------CCCEEEEEECeeCCCH-HHHHHHHHHHHhhcCCCceEEEecCC
Confidence            8899999999999864333 23444444432      4789999999999753 44445555666666666799999999


Q ss_pred             CcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEee
Q 014461          300 GAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITN  379 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~  379 (424)
                      |.|+++|+++|.+.++++||.|+++..++.+.+++++|++||+++..+++|+||++.+.++.|++..++.++|.+.|+|+
T Consensus       149 g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~  228 (270)
T TIGR00436       149 GDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVE  228 (270)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999998776789999999999


Q ss_pred             CCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEE
Q 014461          380 KLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVR  421 (424)
Q Consensus       380 ~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vk  421 (424)
                      |+|||+||||++|++||+||++||++|+++|+|+|||+||||
T Consensus       229 ~~s~k~iiig~~g~~ik~i~~~ar~~l~~~~~~~v~l~l~vk  270 (270)
T TIGR00436       229 RESQKKIIIGKNGSMIKAIGIAARKDILELFDCDVFLELFVK  270 (270)
T ss_pred             cCCceeEEEcCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEC
Confidence            999999999999999999999999999999999999999997

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK00089 era GTPase Era; Reviewed

Probab=100.00  E-value=1.3e-52  Score=403.40  Aligned_cols=276  Identities=30%  Similarity=0.521  Sum_probs=241.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++..|+++|.||||||||+|+|+|.+.+.+++.++||+....+....++.++.++||||+..+..    .....+...+
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----~l~~~~~~~~   78 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----ALNRAMNKAA   78 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh----HHHHHHHHHH
Confidence            467889999999999999999999999999999999999988888777778999999999876532    1112345556


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      +..+..+|++++|+|+++.++..+..+.+.+...      +.|+++|+||+|+......+....+.+....++.+++++|
T Consensus        79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS  152 (292)
T PRK00089         79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS  152 (292)
T ss_pred             HHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence            6678899999999999875555555555555421      4789999999999855456666777777766777899999


Q ss_pred             cCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEE
Q 014461          297 GLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHL  376 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i  376 (424)
                      |++|.|+++|+++|.+.+++++|.|++...++.+.++++.|++||+++..+++|+||++++.++.|++.  +.++|.+.|
T Consensus       153 A~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i  230 (292)
T PRK00089        153 ALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATI  230 (292)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999985  789999999


Q ss_pred             EeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461          377 ITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       377 ~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~  424 (424)
                      +|+++|||+||||++|++||+||+.||++|+++|+|+|||+|||||++
T Consensus       231 ~v~~~~~k~i~ig~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vkv~~  278 (292)
T PRK00089        231 YVERDSQKGIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELWVKVKK  278 (292)
T ss_pred             EEccCCceeEEEeCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEEECC
Confidence            999999999999999999999999999999999999999999999986

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-53  Score=382.63  Aligned_cols=285  Identities=43%  Similarity=0.687  Sum_probs=255.3

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ++..+..+|+++|.||||||||.|.++|.+++.++.+.+||++...++++.+..+++|+||||.........+.......
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            34567899999999999999999999999999999999999999999999999999999999999887766666666667


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH---------------
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK---------------  278 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~---------------  278 (424)
                      ...|..+..||++++|+|++..-......++..++++.     ..|-++|+||+|....+..+..               
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence            78888999999999999998644445567888888876     5889999999998876433322               


Q ss_pred             -HHHHHhc------------CCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHh
Q 014461          279 -VAEQFKH------------LPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLD  345 (424)
Q Consensus       279 -~~~~~~~------------~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~  345 (424)
                       ..+.+..            +.+|..+|++||++|+||++|.+||..+++.+||.|+.++.+++.+++++.|++||++++
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd  301 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLD  301 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHh
Confidence             2222222            234668999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCccCCcceEEEEEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEe
Q 014461          346 HVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK  423 (424)
Q Consensus       346 ~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~  423 (424)
                      ++.+|+||.+++++..|++..+|.+.|..++.|++.||++++||++|..|++||++|+.+|+++|+|+|+|+|.||++
T Consensus       302 ~~pqEVPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l~l~Vk~k  379 (379)
T KOG1423|consen  302 HLPQEVPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFLRLSVKLK  379 (379)
T ss_pred             hCccccCcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHHHHHHHHHHhhceeeEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999985

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=5.4e-26  Score=224.69  Aligned_cols=198  Identities=26%  Similarity=0.318  Sum_probs=148.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ..|+++|.||||||||+|+|++.+. .++++|+||+....+++...+. .+.|+||||+......-     .......+.
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~-----~~Lg~~~l~  233 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG-----AGLGIRFLK  233 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch-----hhHHHHHHH
Confidence            4699999999999999999998775 7899999999999999887654 59999999997543210     011233345


Q ss_pred             hcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC-eEEE
Q 014461          219 AVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE-RIFM  294 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~  294 (424)
                      .+..+|++++|+|++.. ..........+++++....  ....|+++|+||+|+... ..+.+.++.+.+..+.. .+++
T Consensus       234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~el~~~l~~l~~~~~~~~~Vi~  312 (390)
T PRK12298        234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-EEAEERAKAIVEALGWEGPVYL  312 (390)
T ss_pred             HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-HHHHHHHHHHHHHhCCCCCEEE
Confidence            67889999999998621 0122222233333332211  124789999999999754 33444455554443432 5899


Q ss_pred             EecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLL  344 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~  344 (424)
                      +||+++.|+++|+++|.+.++..++.|+++..++.+.+++++|++||++.
T Consensus       313 ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~  362 (390)
T PRK12298        313 ISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE  362 (390)
T ss_pred             EECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999986

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=2.9e-25  Score=217.10  Aligned_cols=246  Identities=20%  Similarity=0.335  Sum_probs=167.6

Q ss_pred             CCCCccCCCCCCCCCCCccChhhHHHHHHhcCCeE--EEeec--cccccchhhhHH------------------------
Q 014461           53 SYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQEE------------------------  104 (424)
Q Consensus        53 ~dar~p~~~~~k~Dl~~~~~~~~~~~~~~~~~~~i--~f~~~--~~~~~~~l~~~~------------------------  104 (424)
                      .++...++.+++++.+..++.+.|...+.|++..|  ||...  |++++.|++.++                        
T Consensus        65 ~~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~  144 (351)
T TIGR03156        65 LEADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGT  144 (351)
T ss_pred             cCCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCC
Confidence            35555556666777788899999999999998887  78777  888888877332                        


Q ss_pred             ------HHHHHHHHH--HHHHHHHHHHhhHHHHHHhhh--hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce
Q 014461          105 ------EEERKHRAL--AKALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT  174 (424)
Q Consensus       105 ------~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt  174 (424)
                            ..+..++.+  ....++..++....+....+.  .....++|+++|+||||||||+|+|++.. ..+.+.+++|
T Consensus       145 ~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT  223 (351)
T TIGR03156       145 RGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFAT  223 (351)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccc
Confidence                  112222222  122233333333333222222  22355899999999999999999999987 4567888888


Q ss_pred             eeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhcc
Q 014461          175 THEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGK  252 (424)
Q Consensus       175 ~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~  252 (424)
                      .+.....+.. ++.++.+|||||+...   .+ ......+..++..+..+|++++|+|++++..... ..+..++..+..
T Consensus       224 ~d~~~~~i~~~~~~~i~l~DT~G~~~~---l~-~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~  299 (351)
T TIGR03156       224 LDPTTRRLDLPDGGEVLLTDTVGFIRD---LP-HELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA  299 (351)
T ss_pred             cCCEEEEEEeCCCceEEEEecCccccc---CC-HHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc
Confidence            8887766665 5678999999998542   22 2333447777888899999999999986543222 233455655542


Q ss_pred             CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       253 ~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                         .+.|+++|+||+|+.... ...    .+..  ...+++++||++|.|+++|+++|.+.
T Consensus       300 ---~~~piIlV~NK~Dl~~~~-~v~----~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       300 ---EDIPQLLVYNKIDLLDEP-RIE----RLEE--GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             ---CCCCEEEEEEeecCCChH-hHH----HHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence               247899999999997532 221    1111  12348999999999999999999764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG2262 HflX GTPases [General function prediction only]

Probab=99.92  E-value=6.3e-25  Score=210.09  Aligned_cols=255  Identities=20%  Similarity=0.293  Sum_probs=189.4

Q ss_pred             EEEEeCCCCccCCCCCCCCCCCccChhhHHHHHHhcCCeE--EEeec--cccccchhhhHH-------------------
Q 014461           48 SVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQEE-------------------  104 (424)
Q Consensus        48 ~vie~~dar~p~~~~~k~Dl~~~~~~~~~~~~~~~~~~~i--~f~~~--~~~~~~~l~~~~-------------------  104 (424)
                      -+++..++.+.++.+.+.+.+..|+.+.+...+.|+...|  ||...  +.+|+.|++.++                   
T Consensus        63 ~~v~~~~ad~VIf~~~LsP~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~G  142 (411)
T COG2262          63 EAVEETGADLVIFDHELSPSQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLG  142 (411)
T ss_pred             HHHHhcCCCEEEECCcCCHHHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhccccc
Confidence            4455667777777788888888999999999999999888  78887  899999888333                   


Q ss_pred             -----------HHHHHHHHHH--HHHHHHHHHhhHHHHHHhhh--hcccceEEEEEecCCCChhHHHHhHhCCcceeecC
Q 014461          105 -----------EEERKHRALA--KALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR  169 (424)
Q Consensus       105 -----------~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~--~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~  169 (424)
                                 +.+.+++.+.  ..-++..|+..+.+++..+.  .....+.|+++|++|+|||||+|+|++.... +.+
T Consensus       143 ggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d  221 (411)
T COG2262         143 GGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVY-VAD  221 (411)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCee-ccc
Confidence                       3445555553  44556777776655554443  3456789999999999999999999987765 466


Q ss_pred             CCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC-chHHHHHHH
Q 014461          170 KTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-PDSRVIRLI  247 (424)
Q Consensus       170 ~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~-~~~~~~~~l  247 (424)
                      ...+|.++....+.. ++.++.+.||.||...   +++ .+...++.+++....+|++++|+|++++... ....+.+.|
T Consensus       222 ~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~---LP~-~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL  297 (411)
T COG2262         222 QLFATLDPTTRRIELGDGRKVLLTDTVGFIRD---LPH-PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVL  297 (411)
T ss_pred             cccccccCceeEEEeCCCceEEEecCccCccc---CCh-HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHH
Confidence            666776665555444 4788999999999875   454 4457799999999999999999999875221 122466777


Q ss_pred             HHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       248 ~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .+++..   ..|+|+|+||+|+..+.. .   ...+....+  ..+++||++|.|++.|++.|.+.+..
T Consensus       298 ~el~~~---~~p~i~v~NKiD~~~~~~-~---~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         298 AEIGAD---EIPIILVLNKIDLLEDEE-I---LAELERGSP--NPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             HHcCCC---CCCEEEEEecccccCchh-h---hhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            776544   478999999999887532 1   222222222  48999999999999999999998864

>PRK11058 GTPase HflX; Provisional

Probab=99.92  E-value=1.3e-24  Score=217.35  Aligned_cols=250  Identities=21%  Similarity=0.281  Sum_probs=168.9

Q ss_pred             CCCCccCCCCCCCCCCCccChhhHHHHHHhcCCeE--EEeec--cccccchhhhHH------------------------
Q 014461           53 SYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQEE------------------------  104 (424)
Q Consensus        53 ~dar~p~~~~~k~Dl~~~~~~~~~~~~~~~~~~~i--~f~~~--~~~~~~~l~~~~------------------------  104 (424)
                      .++.+.++.+.+++.+..++.+.|...+.|++..|  ||...  |.+++.|++.++                        
T Consensus        73 ~~~~~vi~~~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~  152 (426)
T PRK11058         73 TGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGL  152 (426)
T ss_pred             cCCCEEEECCCCCHHHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCC
Confidence            34555555566667788899999999999998887  78877  889999888433                        


Q ss_pred             ------HHHHHHHHHH--HHHHHHHHHhhHHHHHHhh--hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce
Q 014461          105 ------EEERKHRALA--KALLQAALERQEEEEEEVK--EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT  174 (424)
Q Consensus       105 ------~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~--~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt  174 (424)
                            ..+.+++.+.  ...++..|+....+....+  ......++|+++|.||||||||+|+|++.++. +.+.+++|
T Consensus       153 ~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tT  231 (426)
T PRK11058        153 RGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFAT  231 (426)
T ss_pred             CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCC
Confidence                  2344443332  2223333433322222111  22223468999999999999999999998876 77888888


Q ss_pred             eeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhcc
Q 014461          175 THEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGK  252 (424)
Q Consensus       175 ~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~  252 (424)
                      .+.....+...+ .++.+|||||+...   .++ .....+..++..+..+|++++|+|++++...... .+..++..+..
T Consensus       232 ld~~~~~i~l~~~~~~~l~DTaG~~r~---lp~-~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~  307 (426)
T PRK11058        232 LDPTLRRIDVADVGETVLADTVGFIRH---LPH-DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA  307 (426)
T ss_pred             cCCceEEEEeCCCCeEEEEecCccccc---CCH-HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc
Confidence            888766655544 48899999998542   222 2334467777888999999999999865332221 24455665542


Q ss_pred             CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       253 ~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                         .+.|+++|+||+|+.......   .....  .+.+.++++||++|.|+++|+++|.+.+.
T Consensus       308 ---~~~pvIiV~NKiDL~~~~~~~---~~~~~--~~~~~~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        308 ---HEIPTLLVMNKIDMLDDFEPR---IDRDE--ENKPIRVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             ---CCCCEEEEEEcccCCCchhHH---HHHHh--cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence               247899999999997531111   11111  23333588999999999999999999874

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.92  E-value=3.3e-24  Score=208.28  Aligned_cols=162  Identities=25%  Similarity=0.371  Sum_probs=137.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ..|+++|.||||||||+|+|++.+.+.+++.||+|++...+...+.+..+.++||+|+.....   ......+...++.+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~---~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE---DELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc---hHHHHHHHHHHHHH
Confidence            679999999999999999999999999999999999999999999999999999999985421   12234567778888


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..||++|||+|+..+++..+..+.++|...      ++|+++|+||+|-...+..    ..+|- ..|+..++++||..
T Consensus        81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~------~kpviLvvNK~D~~~~e~~----~~efy-slG~g~~~~ISA~H  149 (444)
T COG1160          81 IEEADVILFVVDGREGITPADEEIAKILRRS------KKPVILVVNKIDNLKAEEL----AYEFY-SLGFGEPVPISAEH  149 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEEcccCchhhhh----HHHHH-hcCCCCceEeehhh
Confidence            9999999999999999999999999999853      3899999999998743222    22232 24777899999999


Q ss_pred             CcChHHHHHHHHHhcc
Q 014461          300 GAGLKALTQYLMEQAV  315 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~  315 (424)
                      |.|+++|++.+.+.++
T Consensus       150 g~Gi~dLld~v~~~l~  165 (444)
T COG1160         150 GRGIGDLLDAVLELLP  165 (444)
T ss_pred             ccCHHHHHHHHHhhcC
Confidence            9999999999999985

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=4.5e-25  Score=189.55  Aligned_cols=156  Identities=24%  Similarity=0.367  Sum_probs=111.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ++|+++|.||||||||+|+|+|.+ ..++++|++|.+...+.+...+.++.++||||+.......    ..+.+...+..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s----~ee~v~~~~l~   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS----EEERVARDYLL   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS----HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC----cHHHHHHHHHh
Confidence            479999999999999999999999 5589999999999999999899999999999987653211    12233333333


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      ....|++++|+|++. + +.+..+...+.+++      .|+++|+||+|+...+.. .-..+.+.+..+.+ ++++||++
T Consensus        76 ~~~~D~ii~VvDa~~-l-~r~l~l~~ql~e~g------~P~vvvlN~~D~a~~~g~-~id~~~Ls~~Lg~p-vi~~sa~~  145 (156)
T PF02421_consen   76 SEKPDLIIVVVDATN-L-ERNLYLTLQLLELG------IPVVVVLNKMDEAERKGI-EIDAEKLSERLGVP-VIPVSART  145 (156)
T ss_dssp             HTSSSEEEEEEEGGG-H-HHHHHHHHHHHHTT------SSEEEEEETHHHHHHTTE-EE-HHHHHHHHTS--EEEEBTTT
T ss_pred             hcCCCEEEEECCCCC-H-HHHHHHHHHHHHcC------CCEEEEEeCHHHHHHcCC-EECHHHHHHHhCCC-EEEEEeCC
Confidence            467899999999964 2 22234444455543      899999999998764321 11123333344555 99999999


Q ss_pred             CcChHHHHHHH
Q 014461          300 GAGLKALTQYL  310 (424)
Q Consensus       300 g~gi~~L~~~i  310 (424)
                      |.|+++|++.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.92  E-value=2e-23  Score=203.42  Aligned_cols=166  Identities=27%  Similarity=0.350  Sum_probs=135.2

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ....+++++++|.||||||||+|+|++...++|++.+||||+.....+..+|.++.++||.|+.+...    .-...+++
T Consensus       213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d----~VE~iGIe  288 (454)
T COG0486         213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD----VVERIGIE  288 (454)
T ss_pred             hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc----HHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999986532    22357899


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      +++..+..||++++|+|++.+++..+....+   .    ...+.|+++|+||+|+..... ...    + +...-..++.
T Consensus       289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~----~~~~~~~i~v~NK~DL~~~~~-~~~----~-~~~~~~~~i~  355 (454)
T COG0486         289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE---L----LPKKKPIIVVLNKADLVSKIE-LES----E-KLANGDAIIS  355 (454)
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH---h----cccCCCEEEEEechhcccccc-cch----h-hccCCCceEE
Confidence            9999999999999999998766665555444   1    122478999999999987532 111    1 1112224899


Q ss_pred             EecCCCcChHHHHHHHHHhccCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      +||++|+|++.|.++|.+.+...
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhc
Confidence            99999999999999999988655

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.91  E-value=2.1e-23  Score=202.71  Aligned_cols=172  Identities=26%  Similarity=0.379  Sum_probs=141.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ...++|+++|.||+|||||+|+|+|.+...+++.+|||++.+...+..++..+.++||.|...... .........+.++
T Consensus       176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k-i~e~~E~~Sv~rt  254 (444)
T COG1160         176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK-ITESVEKYSVART  254 (444)
T ss_pred             CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc-cccceEEEeehhh
Confidence            357999999999999999999999999999999999999999999999999999999999975432 2212223456778


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHH---HHHHhcCCCCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKV---AEQFKHLPGYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~---~~~~~~~~~~~~~  292 (424)
                      ...+..+|++++|+|++.++++++..+..++.+.+      .++++|+||.|+.+.. ....+.   +.......++.++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g------~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i  328 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG------RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPI  328 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC------CCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeE
Confidence            88889999999999999999999998888888765      6799999999998752 222222   3333334566789


Q ss_pred             EEEecCCCcChHHHHHHHHHhcc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +++||++|.|++++++.+.+...
T Consensus       329 ~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         329 VFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EEEEecCCCChHHHHHHHHHHHH
Confidence            99999999999999999987653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2.9e-22  Score=204.60  Aligned_cols=244  Identities=20%  Similarity=0.208  Sum_probs=156.3

Q ss_pred             CCcEEEEeCCCC------------------ccCCC-CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHH
Q 014461           45 DCDSVFDSSYFR------------------IPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE  104 (424)
Q Consensus        45 ~~d~vie~~dar------------------~p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~  104 (424)
                      .+|+++-+-|++                  .|++. -||+|+...+.  .....+.......+++|+ ++.|..++... 
T Consensus       117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~-  193 (472)
T PRK03003        117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALWSLGLGEPHPVSALHGRGVGDLLDA-  193 (472)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHHhcCCCCeEEEEcCCCCCcHHHHHH-
Confidence            477777666665                  45555 67889864322  122222222223467777 88888777211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec
Q 014461          105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK  184 (424)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~  184 (424)
                                  +.+...+...     .........+|+++|.||||||||+|+|++.....++..+++|++.....+..
T Consensus       194 ------------i~~~l~~~~~-----~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~  256 (472)
T PRK03003        194 ------------VLAALPEVPR-----VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL  256 (472)
T ss_pred             ------------HHhhcccccc-----cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE
Confidence                        1111111000     00112346899999999999999999999988777889999999887777777


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      ++.++.+|||||+........... .....++...+..+|++++|+|++++.+..+..+...+..      .+.|+++|+
T Consensus       257 ~~~~~~l~DTaG~~~~~~~~~~~e-~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~------~~~piIiV~  329 (472)
T PRK03003        257 GGKTWRFVDTAGLRRRVKQASGHE-YYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE------AGRALVLAF  329 (472)
T ss_pred             CCEEEEEEECCCccccccccchHH-HHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEE
Confidence            888899999999854321110011 1111223345678999999999988766555544444433      247899999


Q ss_pred             ecCCCCCChh--hHHHHH-HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          265 NKVDLVTKKK--DLLKVA-EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       265 NK~Dl~~~~~--~~~~~~-~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ||+|+.....  ...... +.+. ...+.+++++||++|.|++++++.+.+.+..
T Consensus       330 NK~Dl~~~~~~~~~~~~i~~~l~-~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        330 NKWDLVDEDRRYYLEREIDRELA-QVPWAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             ECcccCChhHHHHHHHHHHHhcc-cCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999975321  111112 2222 2234469999999999999999999987753

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=8.5e-22  Score=199.61  Aligned_cols=243  Identities=22%  Similarity=0.279  Sum_probs=161.3

Q ss_pred             CCcEEEEeCCCCc------------------cCCC-CCCCCCCCccChhhHHHHHHhcCC-eEEEeec-cccccchhhhH
Q 014461           45 DCDSVFDSSYFRI------------------PTID-DPQNNNAAKKQEPTWDEKYRERTD-RIVFGEE-AQKGKLRIFQE  103 (424)
Q Consensus        45 ~~d~vie~~dar~------------------p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~-~i~f~~~-~~~~~~~l~~~  103 (424)
                      .+|+++-+-|++.                  |++. -||+|+...+...  .. +...+. .++..++ ++.|...+...
T Consensus        78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~--~~-~~~lg~~~~~~vSa~~g~gv~~ll~~  154 (429)
T TIGR03594        78 EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA--AE-FYSLGFGEPIPISAEHGRGIGDLLDA  154 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH--HH-HHhcCCCCeEEEeCCcCCChHHHHHH
Confidence            4677777767653                  4444 5688886544321  12 233443 5677777 77777655111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe
Q 014461          104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT  183 (424)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~  183 (424)
                                    +...+.....    .........+|+++|.+|+|||||+|+|++.....+++.++||++.....+.
T Consensus       155 --------------i~~~l~~~~~----~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~  216 (429)
T TIGR03594       155 --------------ILELLPEEEE----EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE  216 (429)
T ss_pred             --------------HHHhcCcccc----cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE
Confidence                          1111111000    0112234689999999999999999999998877788999999988777777


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      .++..+.+|||||+........ ........++...+..+|++++|+|++++.+..+..+...+.+.      +.|+++|
T Consensus       217 ~~~~~~~liDT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~------~~~iiiv  289 (429)
T TIGR03594       217 RNGKKYLLIDTAGIRRKGKVTE-GVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEA------GKALVIV  289 (429)
T ss_pred             ECCcEEEEEECCCccccccchh-hHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc------CCcEEEE
Confidence            7788999999999875432111 11122334555678889999999999987776665555544432      3789999


Q ss_pred             EecCCCCCChhhHHHHHHHHhcC---CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          264 MNKVDLVTKKKDLLKVAEQFKHL---PGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||+|+...........+.+...   .+..+++++||++|.|++++++++.+.+.
T Consensus       290 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       290 VNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             EECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999983323333333333322   23456999999999999999999988764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=2.9e-21  Score=196.00  Aligned_cols=171  Identities=26%  Similarity=0.374  Sum_probs=128.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ...++|+++|.+|+|||||+|+|++.....+++.+++|++.....+...+..+.+|||||+........ ........++
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~-~~e~~~~~~~  249 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTE-GVEKYSVIRT  249 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhh-HHHHHHHHHH
Confidence            357999999999999999999999988878899999999988777777888899999999865432111 1111223455


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCCCCeEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIF  293 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~  293 (424)
                      +..+..+|++++|+|++.+.+..+..+...+.+.      +.|+++|+||+|+... ....+..+.+..   ..+..+++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~------~~~~ivv~NK~Dl~~~-~~~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA------GRALVIVVNKWDLVDE-KTMEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCCCH-HHHHHHHHHHHHhcccccCCCEE
Confidence            6677889999999999988777666665555543      3789999999999853 222333333322   22345699


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++||++|.|++++++.+.+...
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987653

>cd04163 Era Era subfamily

Probab=99.88  E-value=4.9e-21  Score=167.14  Aligned_cols=167  Identities=35%  Similarity=0.567  Sum_probs=126.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ...+|+++|.+|+|||||+|++++...+.....+.+++..........+..+.+|||||+.......    .........
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~   77 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL----GERMVKAAW   77 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH----HHHHHHHHH
Confidence            3578999999999999999999999887777777888777666666677889999999987542211    011122334


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|+++........+...+...      +.|+++|+||+|+......+.+....+....+..+++++|+
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~  151 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA  151 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence            456788999999999876455555555555543      36899999999998544566666777777666667999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      +++.|+++++++|.+.+
T Consensus       152 ~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         152 LKGENVDELLEEIVKYL  168 (168)
T ss_pred             ccCCChHHHHHHHHhhC
Confidence            99999999999997753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.3e-21  Score=168.26  Aligned_cols=167  Identities=19%  Similarity=0.212  Sum_probs=127.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+|++++|..|||||||+-++..+++... .+..+...-+....+......+.+|||.|+..+++..+           
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap-----------   72 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP-----------   72 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccc-----------
Confidence            468999999999999999999998887532 11112111111111223345678999999987643221           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                       .++++|+++|+|+|+++  .++......|++++.....++.-+.+|+||+|+...++...+..+.+.+..++. +|++|
T Consensus        73 -MYyRgA~AAivvYDit~--~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETS  148 (200)
T KOG0092|consen   73 -MYYRGANAAIVVYDITD--EESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETS  148 (200)
T ss_pred             -ceecCCcEEEEEEeccc--HHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEe
Confidence             35788999999999976  445567788999988777777777889999999986666667778888887876 99999


Q ss_pred             cCCCcChHHHHHHHHHhccCCCC
Q 014461          297 GLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      ||+|.|++++|..|.+.++....
T Consensus       149 AKTg~Nv~~if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  149 AKTGENVNEIFQAIAEKLPCSDP  171 (200)
T ss_pred             cccccCHHHHHHHHHHhccCccc
Confidence            99999999999999999987653

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.2e-21  Score=188.39  Aligned_cols=169  Identities=26%  Similarity=0.334  Sum_probs=120.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ...|+++|.||||||||+|+|.+.+. .++++++||..+..+.+.. ++.++.+|||||+.+....     ....-...+
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~-----~~gLg~~fl  231 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE-----GAGLGHRFL  231 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc-----cccHHHHHH
Confidence            45799999999999999999998764 4789999999999988876 5567999999999754221     011233445


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ..+..+|++++|+|+++..  ....+..|..++....  ..+.|+++|+||+|+...........+.+....+. .++++
T Consensus       232 rhie~a~vlI~ViD~s~~~--s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i~~i  308 (335)
T PRK12299        232 KHIERTRLLLHLVDIEAVD--PVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PVFLI  308 (335)
T ss_pred             HHhhhcCEEEEEEcCCCCC--CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CEEEE
Confidence            6677899999999997532  2333334444443221  12479999999999976433222233333333333 49999


Q ss_pred             ecCCCcChHHHHHHHHHhccC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ||++|.|+++++++|.+.+..
T Consensus       309 SAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        309 SAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EcCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999988754

>cd01898 Obg Obg subfamily

Probab=99.87  E-value=2.4e-21  Score=170.70  Aligned_cols=165  Identities=25%  Similarity=0.342  Sum_probs=111.2

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      +|+++|.+|||||||+|+|.+... .++..+++|.....+.+...+. .+.+|||||+.......  .   .+....+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~---~~~~~~~~~   75 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG--K---GLGHRFLRH   75 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc--C---CchHHHHHH
Confidence            589999999999999999998665 4667777777776666666665 89999999985322110  1   122334445


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      +..+|++++|+|+++.. .....+..+++.+....  ..+.|+++|+||+|+.+... .......+.......+++++||
T Consensus        76 ~~~~d~vi~v~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa  153 (170)
T cd01898          76 IERTRLLLHVIDLSGDD-DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELLKELLKELWGKPVFPISA  153 (170)
T ss_pred             HHhCCEEEEEEecCCCC-CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHHHHHHhhCCCCCEEEEec
Confidence            56789999999997531 12222333333332111  12478999999999976533 3333333333322235899999


Q ss_pred             CCCcChHHHHHHHHHh
Q 014461          298 LKGAGLKALTQYLMEQ  313 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~  313 (424)
                      ++|.|+++++++|.+.
T Consensus       154 ~~~~gi~~l~~~i~~~  169 (170)
T cd01898         154 LTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=3.9e-21  Score=166.66  Aligned_cols=157  Identities=25%  Similarity=0.389  Sum_probs=116.1

Q ss_pred             EEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccc
Q 014461          143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL  222 (424)
Q Consensus       143 ~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (424)
                      +++|.+|||||||+|+|++......+..+++|+..........+..+.+|||||+.....    .............+..
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~----~~~~~~~~~~~~~~~~   76 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE----GISKEIREQAELAIEE   76 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh----HHHHHHHHHHHHHHHh
Confidence            479999999999999999987666778888888777666777788899999999875421    0111223333445678


Q ss_pred             ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcC
Q 014461          223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG  302 (424)
Q Consensus       223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  302 (424)
                      +|++++|+|+.+..+.....+..++...      +.|+++|+||+|+......    ...+.. .+..+++++||++|.|
T Consensus        77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~g  145 (157)
T cd01894          77 ADVILFVVDGREGLTPADEEIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYS-LGFGEPIPISAEHGRG  145 (157)
T ss_pred             CCEEEEEEeccccCCccHHHHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHh-cCCCCeEEEecccCCC
Confidence            9999999999776655555555666543      3789999999999875322    222222 3444689999999999


Q ss_pred             hHHHHHHHHHhc
Q 014461          303 LKALTQYLMEQA  314 (424)
Q Consensus       303 i~~L~~~i~~~l  314 (424)
                      +++++++|.+.+
T Consensus       146 v~~l~~~l~~~~  157 (157)
T cd01894         146 IGDLLDAILELL  157 (157)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01878 HflX HflX subfamily

Probab=99.87  E-value=3.2e-20  Score=169.02  Aligned_cols=165  Identities=21%  Similarity=0.299  Sum_probs=111.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ....++|+++|++|||||||+|++++.... +.+.+.+|.......+...+ ..+.+|||||+....   . ......+.
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~-~~~~~~~~  112 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL---P-HQLVEAFR  112 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCC---C-HHHHHHHH
Confidence            345689999999999999999999997643 34445555555444444444 389999999986431   1 12223344


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      ..+..+..+|++++|+|++++..... ..+.+++.....   .+.|+++|+||+|+..... ..    ..... ...+++
T Consensus       113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~---~~~~viiV~NK~Dl~~~~~-~~----~~~~~-~~~~~~  183 (204)
T cd01878         113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA---EDIPMILVLNKIDLLDDEE-LE----ERLEA-GRPDAV  183 (204)
T ss_pred             HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc---CCCCEEEEEEccccCChHH-HH----HHhhc-CCCceE
Confidence            44555678999999999976543322 233455554432   2478999999999976422 11    11222 233599


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++||++|.|+++++++|.+.+
T Consensus       184 ~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         184 FISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             EEEcCCCCCHHHHHHHHHhhC
Confidence            999999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=7.5e-21  Score=202.94  Aligned_cols=171  Identities=20%  Similarity=0.250  Sum_probs=124.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ...+|+++|.+|||||||+|+|++.+...+++.++||++.....+..++.++.+|||||+........... .....++.
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e-~~~~~r~~  527 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAE-YYSSLRTQ  527 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHH-HHHHHHHH
Confidence            35799999999999999999999998777889999999988777778888999999999864322111001 11122344


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCCCCeEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIFM  294 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~  294 (424)
                      ..+..+|++++|+|++++.+..+..+...+...      +.|+++|+||+|+.+.. ........+..   ...+.++++
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~------~~piIiV~NK~DL~~~~-~~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLKVMSMAVDA------GRALVLVFNKWDLMDEF-RRQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEEchhcCChh-HHHHHHHHHHHhccCCCCCCEEE
Confidence            567889999999999887666555544444332      47899999999997632 21222222221   223456899


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +||++|.|+++|++.+.+.+..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998753

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=2.1e-20  Score=189.03  Aligned_cols=159  Identities=23%  Similarity=0.348  Sum_probs=121.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+++|+++|.+|||||||+|+|++...+.+++.+++|++.....+..++..+.+|||||+..+..    ......+..+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~----~ie~~gi~~~  288 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD----EVEKIGIERS  288 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc----HHHHHHHHHH
Confidence            456899999999999999999999988777899999999888777778888999999999864321    1112235667


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      +..+..+|++++|+|++++.+..+.   ..+..     ..+.|+++|+||+|+...... .       .. ...+++++|
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~---~~l~~-----~~~~piiiV~NK~DL~~~~~~-~-------~~-~~~~~i~iS  351 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDD---EILEE-----LKDKPVIVVLNKADLTGEIDL-E-------EE-NGKPVIRIS  351 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHH---HHHHh-----cCCCCcEEEEEhhhccccchh-h-------hc-cCCceEEEE
Confidence            7788999999999999865543322   22222     124789999999999764221 1       11 223589999


Q ss_pred             cCCCcChHHHHHHHHHhccC
Q 014461          297 GLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~  316 (424)
                      |++|.|+++|+++|.+.+..
T Consensus       352 Aktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        352 AKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eeCCCCHHHHHHHHHHHHhh
Confidence            99999999999999998754

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.87  E-value=9e-21  Score=166.78  Aligned_cols=167  Identities=24%  Similarity=0.320  Sum_probs=108.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ++|+++|.+|||||||+|+|.+.... ++..+++|.....+.....+.++.+|||||+..... ............+.  
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~~~--   76 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EERNTIEMQAITAL--   76 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cCCchHHHHHHHHH--
Confidence            36899999999999999999987764 455666676666555556678999999999853211 00000100011111  


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      ...+|++++|+|+++..+........++..+.... .+.|+++|+||+|+.... .... .+.+..... .+++++||++
T Consensus        77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~-~~~~-~~~~~~~~~-~~~~~~Sa~~  152 (168)
T cd01897          77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFE-DLSE-IEEEEELEG-EEVLKISTLT  152 (168)
T ss_pred             HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchh-hHHH-HHHhhhhcc-CceEEEEecc
Confidence            12358999999997643322222334444433221 257999999999997642 2222 334443333 3599999999


Q ss_pred             CcChHHHHHHHHHhc
Q 014461          300 GAGLKALTQYLMEQA  314 (424)
Q Consensus       300 g~gi~~L~~~i~~~l  314 (424)
                      |.|+++++++|.+.+
T Consensus       153 ~~gi~~l~~~l~~~~  167 (168)
T cd01897         153 EEGVDEVKNKACELL  167 (168)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            999999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=99.86  E-value=6.4e-21  Score=167.45  Aligned_cols=161  Identities=17%  Similarity=0.177  Sum_probs=107.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|.+|+|||||++++.+..+........ +.+.....+..++  ..+.+|||||...+            ....
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~------------~~~~   69 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI-GVDFTMKTLEIEGKRVKLQIWDTAGQERF------------RTIT   69 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc-ceEEEEEEEEECCEEEEEEEEECCChHHH------------HHHH
Confidence            4789999999999999999998876543222111 1112222233344  47899999996432            1112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+...+....+....+.+..+...++++|
T Consensus        70 ~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S  147 (165)
T cd01864          70 QSYYRSANGAIIAYDITRRSS--FESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS  147 (165)
T ss_pred             HHHhccCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence            234677899999999975322  233445555544333346899999999999765433334445555555666689999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|++++++.+.+.+
T Consensus       148 a~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         148 AKESQNVEEAFLLMATEL  165 (165)
T ss_pred             CCCCCCHHHHHHHHHHhC
Confidence            999999999999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=99.86  E-value=5.3e-21  Score=172.40  Aligned_cols=167  Identities=14%  Similarity=0.157  Sum_probs=110.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ++|+++|.+|||||||++++.+..+.. .....++. ......+..+  ..++.+|||||.....            ...
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR------------SVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH------------Hhh
Confidence            479999999999999999999877642 22222222 2212123333  3568899999964321            111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|+++.  .....+..|+..+......+.|+++|+||+|+...+.........+....+. +++++|
T Consensus        68 ~~~~~~ad~~i~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~S  144 (191)
T cd04112          68 HAYYRDAHALLLLYDITNK--ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETS  144 (191)
T ss_pred             HHHccCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEe
Confidence            2346778999999999753  2223344455444333333589999999999965333223334445444454 599999


Q ss_pred             cCCCcChHHHHHHHHHhccCCCCCCC
Q 014461          297 GLKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                      |++|.|+++++++|.+.+....+.++
T Consensus       145 a~~~~~v~~l~~~l~~~~~~~~~~~~  170 (191)
T cd04112         145 AKTGLNVELAFTAVAKELKHRKYEQP  170 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhccccC
Confidence            99999999999999999877665543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.86  E-value=7.1e-21  Score=167.28  Aligned_cols=160  Identities=15%  Similarity=0.163  Sum_probs=107.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++.+.++..... +..+... .... .......+.+|||||...+.         .   ...
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~---------~---~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV-STVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR---------T---ITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCEEEEEEEEECCChHHHH---------H---HHH
Confidence            689999999999999999999887642211 1111111 1111 11223568999999975321         1   112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..++.+|++++|+|+++.  .....+.+|+..+......+.|+++|+||+|+...+....+....+....+. +++++||
T Consensus        69 ~~~~~~~~~l~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  145 (165)
T cd01865          69 AYYRGAMGFILMYDITNE--ESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASA  145 (165)
T ss_pred             HHccCCcEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEEC
Confidence            346789999999999753  2334556677666544444688999999999976533323334445444555 4999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.|+++++++|.+.+.
T Consensus       146 ~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         146 KENINVKQVFERLVDIIC  163 (165)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04142 RRP22 RRP22 subfamily

Probab=99.86  E-value=1.1e-20  Score=171.03  Aligned_cols=170  Identities=15%  Similarity=0.133  Sum_probs=107.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||++++++..+... ..|.++..........++  ..+.+|||||...+.... .   ........
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~-~---~e~~~~~~   75 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTA-G---QEWMDPRF   75 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccc-h---hHHHHHHH
Confidence            4799999999999999999998876532 222222222222233344  467899999986432111 1   11122233


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-CCCCCeEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGYERIF  293 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~  293 (424)
                      ..+..+|++++|+|++++.  ....+..|++.+...   ...+.|+++|+||+|+...+....+..+.+.. ..+. +++
T Consensus        76 ~~~~~ad~iilv~D~~~~~--S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~  152 (198)
T cd04142          76 RGLRNSRAFILVYDICSPD--SFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYL  152 (198)
T ss_pred             hhhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEE
Confidence            4568899999999997532  222333343333221   13458999999999996543222233344432 3344 499


Q ss_pred             EEecCCCcChHHHHHHHHHhccCC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ++||++|.|++++|+.+.+.+...
T Consensus       153 e~Sak~g~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         153 ECSAKYNWHILLLFKELLISATTR  176 (198)
T ss_pred             EecCCCCCCHHHHHHHHHHHhhcc
Confidence            999999999999999999877543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04122 Rab14 Rab14 subfamily

Probab=99.86  E-value=9.3e-21  Score=166.66  Aligned_cols=158  Identities=19%  Similarity=0.201  Sum_probs=108.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE-EEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~-~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ++|+++|.+|||||||++++.+..+.  ...+.+..... ...+..+  ...+.+|||||...+.         .   ..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~---~~   68 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR---------A---VT   68 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------H---HH
Confidence            68999999999999999999987664  23333322221 1112233  3468999999975321         1   11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...++.+|++++|+|+++.  .....+..|+........++.|+++|+||+|+........+....+....+. .++++|
T Consensus        69 ~~~~~~~~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S  145 (166)
T cd04122          69 RSYYRGAAGALMVYDITRR--STYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECS  145 (166)
T ss_pred             HHHhcCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEE
Confidence            2346789999999999763  2334455666655443345689999999999976543333444555554454 599999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|++++++.+...+
T Consensus       146 a~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         146 AKTGENVEDAFLETAKKI  163 (166)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998765

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04140 ARHI_like ARHI subfamily

Probab=99.86  E-value=9.8e-21  Score=166.39  Aligned_cols=159  Identities=19%  Similarity=0.125  Sum_probs=101.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++++..+...  ...+........  .......+.+|||||...+.         ...   .
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~---~   67 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP---------AMQ---R   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCcchheEEEEEEECCEEEEEEEEECCCCCcch---------HHH---H
Confidence            6899999999999999999998775321  111111111111  22334568899999986431         111   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|.++..+... ..+.+.+.+......++.|+++|+||+|+...+.........+....+. .+++||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S  146 (165)
T cd04140          68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETS  146 (165)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEee
Confidence            23567899999999976432211 2333445444333334689999999999976333222233334443444 489999


Q ss_pred             cCCCcChHHHHHHHHHh
Q 014461          297 GLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~  313 (424)
                      |++|.|+++++++|.+.
T Consensus       147 A~~g~~v~~~f~~l~~~  163 (165)
T cd04140         147 AKTNHNVQELFQELLNL  163 (165)
T ss_pred             cCCCCCHHHHHHHHHhc
Confidence            99999999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.4e-20  Score=192.27  Aligned_cols=164  Identities=24%  Similarity=0.300  Sum_probs=124.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ...+|+++|.+|||||||+|+|++...+.+.+.+++|++.........+..+.+|||||+......    ........+.
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~----~~~~~~~~~~  112 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG----LQASVAEQAE  112 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchh----HHHHHHHHHH
Confidence            457899999999999999999999888778899999998888777788889999999998632211    1112223344


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++|+|+|++++.+..+..+..++...      +.|+++|+||+|+.......   .+.+.  .++...++|||
T Consensus       113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~------~~piilV~NK~Dl~~~~~~~---~~~~~--~g~~~~~~iSA  181 (472)
T PRK03003        113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS------GKPVILAANKVDDERGEADA---AALWS--LGLGEPHPVSA  181 (472)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECccCCccchhh---HHHHh--cCCCCeEEEEc
Confidence            567889999999999887766666666666642      47999999999986532211   12222  24445689999


Q ss_pred             CCCcChHHHHHHHHHhccC
Q 014461          298 LKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++|.|+++|+++|.+.++.
T Consensus       182 ~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        182 LHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCCCcHHHHHHHHhhccc
Confidence            9999999999999998865

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.86  E-value=1.2e-20  Score=183.14  Aligned_cols=169  Identities=27%  Similarity=0.352  Sum_probs=120.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      -...|+++|.||||||||+|+|.+.+. .+++++.||..+..+.+...+ .++.+|||||+.+.....     ...-...
T Consensus       156 ~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~-----~gLg~~f  229 (329)
T TIGR02729       156 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG-----AGLGHRF  229 (329)
T ss_pred             ccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc-----ccHHHHH
Confidence            346799999999999999999998764 478889999998888877766 789999999997542210     1122334


Q ss_pred             HhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccC--CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          217 WSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~--~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      +..+..+|++++|+|+++. .......+..+.+++...  ...+.|+++|+||+|+... ....+..+.+.+..+. +++
T Consensus       230 lrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~~~~~~~~~l~~~~~~-~vi  307 (329)
T TIGR02729       230 LKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-EELAELLKELKKALGK-PVF  307 (329)
T ss_pred             HHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-HHHHHHHHHHHHHcCC-cEE
Confidence            5556788999999999753 112223333333333221  1124799999999999765 3344555566554444 499


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++||+++.|+++++++|.+.+
T Consensus       308 ~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       308 PISALTGEGLDELLYALAELL  328 (329)
T ss_pred             EEEccCCcCHHHHHHHHHHHh
Confidence            999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01895 EngA2 EngA2 subfamily

Probab=99.85  E-value=4.1e-20  Score=162.67  Aligned_cols=168  Identities=27%  Similarity=0.359  Sum_probs=117.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .++|+++|.+|+|||||+|+|++......++.+++++......+..++..+.+|||||+......... .........+.
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~-~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEG-IEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhcc-HHHHHHHHHHH
Confidence            47899999999999999999999876667777888877766666677778999999998754211100 00111233445


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHhcCCC---CCeEEE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPG---YERIFM  294 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~---~~~~~~  294 (424)
                      .+..+|++++|+|++++.+.....+...+...      +.|+++|+||+|+.... .......+.+....+   ..++++
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLRIAGLILEE------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            56788999999999876554443333333221      37899999999997652 223333333433322   346999


Q ss_pred             EecCCCcChHHHHHHHHHh
Q 014461          295 TSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~  313 (424)
                      +||++|.|++++++++.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04171 SelB SelB subfamily

Probab=99.85  E-value=3.2e-20  Score=162.20  Aligned_cols=155  Identities=18%  Similarity=0.336  Sum_probs=101.6

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeec--CCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVS--RKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~--~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .|+++|.+|||||||+|+|.+.......  ..+++|.......+... +..+.+|||||+..+            .....
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~------------~~~~~   69 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF------------IKNML   69 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH------------HHHHH
Confidence            5899999999999999999975432222  23455555544444444 678999999997432            22333


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCC-CCCeEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLP-GYERIF  293 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~~  293 (424)
                      ..+..+|++++|+|+++++..........+...+     ..|+++|+||+|+.....   ...+..+.+.... ...+++
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIF  144 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence            4567899999999997644333333333333322     248999999999976421   1122233333320 123599


Q ss_pred             EEecCCCcChHHHHHHHHH
Q 014461          294 MTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~  312 (424)
                      ++||++|.|++++++.|.+
T Consensus       145 ~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         145 PVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEeCCCCcCHHHHHHHHhh
Confidence            9999999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.85  E-value=2.1e-20  Score=164.30  Aligned_cols=161  Identities=17%  Similarity=0.188  Sum_probs=108.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|.+|||||||++++.+..+.. ...+..+.......+...  ..++.+|||||...+.         .   ..
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~---~~   68 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---------T---IT   68 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH---------H---HH
Confidence            3689999999999999999999877643 222222222222223333  3468999999965321         1   11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...++.+|++++|+|+++.  .....+..|+..+.....++.|+++|+||+|+........+....+....+. +++++|
T Consensus        69 ~~~~~~~~~ii~v~d~~~~--~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  145 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETS  145 (166)
T ss_pred             HHHhCcCCEEEEEEECcCH--HHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEE
Confidence            2345788999999999753  2334455666655443334589999999999876433323334455555555 499999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.|+++++++|.+.+.
T Consensus       146 a~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         146 AKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999999999999988763

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04120 Rab12 Rab12 subfamily

Probab=99.85  E-value=2.3e-20  Score=169.24  Aligned_cols=159  Identities=16%  Similarity=0.213  Sum_probs=107.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .|+++|.+|||||||++++....+..  ....|. .......+..++  ..+.+|||+|...+.         . +  ..
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~---------~-l--~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---------S-I--TS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH---------H-H--HH
Confidence            58999999999999999999877642  222222 222222233444  567899999986431         1 1  12


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC-CCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~iS  296 (424)
                      ..++.+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...++......+.+.+.. +. .++++|
T Consensus        68 ~y~~~ad~iIlVfDvtd~~--Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etS  144 (202)
T cd04120          68 AYYRSAKGIILVYDITKKE--TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEAS  144 (202)
T ss_pred             HHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEec
Confidence            3467899999999998643  2334445555444333346899999999999764444444455555443 33 599999


Q ss_pred             cCCCcChHHHHHHHHHhccC
Q 014461          297 GLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~  316 (424)
                      |++|.||+++|++|.+.+..
T Consensus       145 Aktg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         145 AKDNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999987643

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.85  E-value=4.1e-20  Score=170.12  Aligned_cols=195  Identities=14%  Similarity=0.134  Sum_probs=123.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|+++|.+|||||||+++++.+.+.. .....+.+..............+.+|||||...+..          +. 
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~-   79 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LR-   79 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh----------hh-
Confidence            567899999999999999999988766532 122222222222211222345789999999865421          11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ...+..+|++|+|+|.++..  ....+..|+..+.... ++.|+++|+||+|+.... ...+.. .+....++ .++++
T Consensus        80 -~~~~~~~~~~ilvfD~~~~~--s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~~-v~~~~~-~~~~~~~~-~~~e~  152 (219)
T PLN03071         80 -DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNL-QYYEI  152 (219)
T ss_pred             -HHHcccccEEEEEEeCCCHH--HHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhcc-CCHHHH-HHHHhcCC-EEEEc
Confidence             12357789999999997642  2334456666554332 358999999999986432 112222 34333444 49999


Q ss_pred             ecCCCcChHHHHHHHHHhccCC--------CCCCCCCCcchhhHHHHHHHHHHHHHHhhcCc
Q 014461          296 SGLKGAGLKALTQYLMEQAVQR--------PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQ  349 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~--------~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~  349 (424)
                      ||++|.|++++|++|.+.+...        +..+++....++.......+.+++.....+.+
T Consensus       153 SAk~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (219)
T PLN03071        153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPD  214 (219)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999887543        23334444455555555556666666555543

>cd01866 Rab2 Rab2 subfamily

Probab=99.85  E-value=1.6e-20  Score=165.60  Aligned_cols=162  Identities=17%  Similarity=0.164  Sum_probs=108.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .++|+++|.+|||||||++++.+..+....... +.+..............+.+|||||...+            .....
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------~~~~~   71 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF------------RSITR   71 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH------------HHHHH
Confidence            478999999999999999999987764332222 22222222112222346899999996432            11122


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..++.+|++++|+|+++.  .....+..|+.++.....++.|+++|+||+|+.............+....+. .++++||
T Consensus        72 ~~~~~~d~il~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa  148 (168)
T cd01866          72 SYYRGAAGALLVYDITRR--ETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSA  148 (168)
T ss_pred             HHhccCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence            345788999999999752  2334556677665444345689999999999975433223334444444444 4999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.|++++++++.+.+.
T Consensus       149 ~~~~~i~~~~~~~~~~~~  166 (168)
T cd01866         149 KTASNVEEAFINTAKEIY  166 (168)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988763

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.85  E-value=1.6e-20  Score=165.45  Aligned_cols=160  Identities=14%  Similarity=0.139  Sum_probs=106.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|++|||||||++++.+..+... ..+..+.+.....+...+  ..+.+|||||...+.         .   ..
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------~---~~   69 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR---------T---IT   69 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceEEEEEEEECCEEEEEEEEeCCchHHHH---------H---HH
Confidence            47899999999999999999998776421 111111111111222233  468899999965321         1   11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...++.+|++++|+|+++..  ....+.+|+..+......+.|+++|+||+|+.+......+....+....+. +++++|
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  146 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEK--SFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETS  146 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHH--HHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence            23467899999999997532  233455666655443334689999999999986433233334444444455 499999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|+++++++|.+.+
T Consensus       147 a~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         147 AKANINVEEAFFTLAKDI  164 (167)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998876

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01861 Rab6 Rab6 subfamily

Probab=99.85  E-value=2.2e-20  Score=163.02  Aligned_cols=159  Identities=19%  Similarity=0.171  Sum_probs=107.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|++|||||||+|++++.++.. ...+.++.+.....+..++  .++.+|||||...+.         .+.   .
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~~~---~   67 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR---------SLI---P   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH---------HHH---H
Confidence            379999999999999999999887753 4445555544444444444  468999999964321         111   2


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|++++.+  ...+..++..+......+.|+++|+||+|+........+....+....+. .++++||
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  144 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQS--FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSA  144 (161)
T ss_pred             HHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEEeC
Confidence            34577899999999975322  23344555544333333589999999999954433333334444444444 4999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.|+++++++|.+.+
T Consensus       145 ~~~~~v~~l~~~i~~~l  161 (161)
T cd01861         145 KAGHNVKELFRKIASAL  161 (161)
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999998753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.85  E-value=4.2e-20  Score=160.02  Aligned_cols=156  Identities=28%  Similarity=0.416  Sum_probs=115.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +.+|+++|++|+|||||+|++.+.....+++.+++|.......+...+.++.+|||||+......    .........+.
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~~~~   76 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE----IEKIGIERARE   76 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch----HHHHHHHHHHH
Confidence            35899999999999999999999887777888888887766666677788999999998754321    11123445556


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|++++|+|++...+.......   ..     ....|+++|+||+|+......       .... ...+++++||+
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~---~~-----~~~~~vi~v~nK~D~~~~~~~-------~~~~-~~~~~~~~Sa~  140 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEIL---EL-----PADKPIIVVLNKSDLLPDSEL-------LSLL-AGKPIIAISAK  140 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHH---Hh-----hcCCCEEEEEEchhcCCcccc-------cccc-CCCceEEEECC
Confidence            67789999999999864444333222   22     124789999999999864322       1112 23359999999


Q ss_pred             CCcChHHHHHHHHHhc
Q 014461          299 KGAGLKALTQYLMEQA  314 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l  314 (424)
                      +|.|+++++++|.+.+
T Consensus       141 ~~~~v~~l~~~l~~~~  156 (157)
T cd04164         141 TGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=3.2e-20  Score=184.64  Aligned_cols=168  Identities=24%  Similarity=0.348  Sum_probs=118.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ..|+++|.||||||||+|+|++.+. .++++++||..+..+.+... +.++.++||||+......     ........+.
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~-----~~gLg~~fLr  232 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE-----GVGLGHQFLR  232 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc-----cchHHHHHHH
Confidence            4799999999999999999998775 46889999999988877766 678999999999753211     1122334455


Q ss_pred             hcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          219 AVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      .+..+|++++|+|+++.. ..+...+..+..++....  ....|+++|+||+|+......+    +.+.+..+ .+++++
T Consensus       233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l----~~l~~~l~-~~i~~i  307 (424)
T PRK12297        233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL----EEFKEKLG-PKVFPI  307 (424)
T ss_pred             HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH----HHHHHHhC-CcEEEE
Confidence            677899999999997431 122222333333332211  1257999999999985432222    23333333 359999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ||++|.|+++|+++|.+.+...+
T Consensus       308 SA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        308 SALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999886544

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.85  E-value=2.6e-20  Score=163.05  Aligned_cols=159  Identities=15%  Similarity=0.102  Sum_probs=105.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|.+|+|||||++++++..+.  .....++..........++  ..+.+|||||.....         ....  
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~--   68 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS---------AMRE--   68 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCcchh---------HHHH--
Confidence            478999999999999999999987653  3444444433332233333  467899999976431         1111  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ..+..+|++++|+|+++..+  ...+..|+..+... ...+.|+++|+||+|+.............+....+. +++++
T Consensus        69 -~~~~~~~~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  144 (164)
T cd04145          69 -QYMRTGEGFLLVFSVTDRGS--FEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIET  144 (164)
T ss_pred             -HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEe
Confidence             23567899999999975322  22333444333221 123579999999999976433223334445444455 49999


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||++|.|+++++++|.+.+
T Consensus       145 Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         145 SAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             eCCCCCCHHHHHHHHHHhh
Confidence            9999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04136 Rap_like Rap-like subfamily

Probab=99.85  E-value=2.1e-20  Score=163.41  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=103.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++.+..+.  .....|+.......+..++  ..+.+|||||...+..          +.  .
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~   67 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----------MR--D   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccch----------HH--H
Confidence            68999999999999999999987654  2333333332223333344  4567899999865421          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|+++..+  ...+..|+..+... ...+.|+++|+||+|+...+.........+....+ .+++++|
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S  144 (163)
T cd04136          68 LYIKNGQGFVLVYSITSQSS--FNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETS  144 (163)
T ss_pred             HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEec
Confidence            23567899999999975322  23333444333221 12358999999999997543333333444544445 4599999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|+++++++|.+.+
T Consensus       145 a~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         145 AKSKINVDEVFADLVRQI  162 (163)
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=2.3e-20  Score=189.14  Aligned_cols=161  Identities=24%  Similarity=0.319  Sum_probs=127.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|||||||+|+|++...+.+++.+++|++.........+..+.+|||||+.....    .........+...+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~~~~~~~~~~   76 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDD----GLDKQIREQAEIAI   76 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcch----hHHHHHHHHHHHHH
Confidence            48999999999999999999988888899999999988887888888999999999854321    11123344555667


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g  300 (424)
                      ..+|++++|+|+..+.+..+..+.+++++.      +.|+++|+||+|+.......    .++. ..++.+++++||++|
T Consensus        77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~------~~piilVvNK~D~~~~~~~~----~~~~-~lg~~~~~~vSa~~g  145 (429)
T TIGR03594        77 EEADVILFVVDGREGLTPEDEEIAKWLRKS------GKPVILVANKIDGKKEDAVA----AEFY-SLGFGEPIPISAEHG  145 (429)
T ss_pred             hhCCEEEEEEeCCCCCCHHHHHHHHHHHHh------CCCEEEEEECccCCcccccH----HHHH-hcCCCCeEEEeCCcC
Confidence            889999999999887777676777888764      37899999999987643222    2222 346667999999999


Q ss_pred             cChHHHHHHHHHhccC
Q 014461          301 AGLKALTQYLMEQAVQ  316 (424)
Q Consensus       301 ~gi~~L~~~i~~~l~~  316 (424)
                      .|++++++++.+.++.
T Consensus       146 ~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       146 RGIGDLLDAILELLPE  161 (429)
T ss_pred             CChHHHHHHHHHhcCc
Confidence            9999999999998865

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01868 Rab11_like Rab11-like

Probab=99.85  E-value=3.1e-20  Score=162.98  Aligned_cols=160  Identities=18%  Similarity=0.198  Sum_probs=106.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+|+++|.+|||||||++++.+..+.... .+..+.+.....+..++  ..+.+|||||.....         ...   
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~---   69 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR---------AIT---   69 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHHH---------HHH---
Confidence            368999999999999999999988765322 22222222222233333  468899999975321         111   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..++++++|+|+++..  ....+.+|+..+......+.|+++|+||+|+...+....+....+....+. .++++|
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  146 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQ--TFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETS  146 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEE
Confidence            12356789999999997532  233455566655443333589999999999976433333334444444444 499999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|+++++++|.+.+
T Consensus       147 a~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         147 ALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.85  E-value=2.6e-20  Score=163.13  Aligned_cols=159  Identities=14%  Similarity=0.122  Sum_probs=102.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||+|++.+..+..  ....++.+........+  ...+.+|||||...+.         ....   
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~---   66 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS---------AMRD---   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch---------HHHH---
Confidence            379999999999999999999877642  22233332222222333  3467899999976532         1111   


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|+++..+  ...+..|...+.. ....+.|+++|+||+|+...+.........+....+. +++++|
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  143 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQS--FEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETS  143 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEee
Confidence            23567899999999975322  2223333322211 1122579999999999976433223334444444443 599999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.|+++++++|.+.+.
T Consensus       144 a~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      144 AKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             cCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998763

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=3.8e-20  Score=186.22  Aligned_cols=171  Identities=25%  Similarity=0.319  Sum_probs=119.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ....|+++|.||||||||+|+|++.+.. ++++++||+....+.+...+.++.++||||+.....     .....-...+
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-----~g~gLg~~fL  231 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-----EGKGLGLDFL  231 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccc-----hhhHHHHHHH
Confidence            4567999999999999999999987654 689999999999998888888999999999875321     1112223445


Q ss_pred             hhcccccEEEEEEeCCCCC--CCch---HHHHHHHHHhccC--------CCCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHL--TSPD---SRVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~--~~~~---~~~~~~l~~~~~~--------~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~  284 (424)
                      ..+..+|++++|+|++...  ..+.   ..+...|..+...        .....|+++|+||+|+.............+.
T Consensus       232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~  311 (500)
T PRK12296        232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE  311 (500)
T ss_pred             HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH
Confidence            5678899999999997421  1111   1222233322210        1124799999999999754322222222333


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      . .+. ++|+|||+++.|+++|+++|.+.+..
T Consensus       312 ~-~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        312 A-RGW-PVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             H-cCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2 244 49999999999999999999888754

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.84  E-value=3.7e-20  Score=161.94  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=104.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ++|+++|++|+|||||+|++++..+.. .....+.+.......+...+..+.+|||||.....            .....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~------------~~~~~   69 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR------------SLAPM   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHH------------HHHHH
Confidence            689999999999999999999987653 22222222222222233334568899999964321            11112


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|++++|+|+++..  .......|+..+.....+..|+++|+||+|+.............+....+. .++++||+
T Consensus        70 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  146 (163)
T cd01860          70 YYRGAAAAIVVYDITSEE--SFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAK  146 (163)
T ss_pred             HhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECC
Confidence            456789999999997532  223334455544333334689999999999874322222233344444444 49999999


Q ss_pred             CCcChHHHHHHHHHhc
Q 014461          299 KGAGLKALTQYLMEQA  314 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l  314 (424)
                      +|.|+++++++|.+.+
T Consensus       147 ~~~~v~~l~~~l~~~l  162 (163)
T cd01860         147 TGENVNELFTEIAKKL  162 (163)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04175 Rap1 Rap1 subgroup

Probab=99.84  E-value=3.9e-20  Score=162.23  Aligned_cols=158  Identities=15%  Similarity=0.121  Sum_probs=103.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||+++++.+.+.  ....+|+.......+...+  ..+.+|||||...+..          +.  .
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~   67 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----------MR--D   67 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----------HH--H
Confidence            58999999999999999999876553  3344444433333333443  3567999999864321          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|.++..+  ...+.+|+..+.. ....+.|+++|+||+|+.............+.+..+. +++++|
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  144 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQST--FNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETS  144 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEee
Confidence            23567899999999865322  2223334443322 1234589999999999976432222233445444444 599999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|+++++++|.+.+
T Consensus       145 a~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         145 AKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.84  E-value=4.9e-20  Score=161.15  Aligned_cols=160  Identities=19%  Similarity=0.209  Sum_probs=106.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +||+++|.+|+|||||++++.+..+.. ...+..+.......+..++  ..+.+|||||...+.            ....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------------~~~~   67 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR------------SITS   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH------------HHHH
Confidence            479999999999999999999877632 2222222222222233333  468899999964321            1112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|+++..+  ...+..|+..+.....++.|+++|+||+|+....+...+....+....++. ++++||
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s--~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa  144 (164)
T smart00175       68 SYYRGAVGALLVYDITNRES--FENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSA  144 (164)
T ss_pred             HHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeC
Confidence            33577899999999975322  233445666554433346899999999998764332233344455555654 999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.|+++++++|.+.+.
T Consensus       145 ~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      145 KTNTNVEEAFEELAREIL  162 (164)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998764

Rab GTPases are implicated in vesicle trafficking.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.84  E-value=3.4e-20  Score=164.30  Aligned_cols=161  Identities=16%  Similarity=0.155  Sum_probs=106.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|.+|||||||++++.+..+..  ....|........+..++  ..+.+|||||...+.         .+..  
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~l~~--   68 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT---------AMRD--   68 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH---------HHhH--
Confidence            4689999999999999999999877642  222222222222233333  468899999976431         1111  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ..+..+|++++|+|+++..+.... .+...+.+..  ..++.|+++|+||+|+...+....+....+.+..+. ++++|
T Consensus        69 -~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~  144 (172)
T cd04141          69 -QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFET  144 (172)
T ss_pred             -HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc--CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEE
Confidence             235678999999999764433221 2223344332  123589999999999865433333344555554555 49999


Q ss_pred             ecCCCcChHHHHHHHHHhccC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ||++|.||+++|++|...+..
T Consensus       145 Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         145 SAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             ecCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999987653

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04144 Ras2 Ras2 subfamily

Probab=99.84  E-value=2.1e-20  Score=168.37  Aligned_cols=158  Identities=13%  Similarity=0.122  Sum_probs=103.1

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +|+++|.+|||||||+++|.+..+..  ....++..........++  ..+.+|||||...+.         . +.  ..
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~~--~~   66 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT---------A-LR--DQ   66 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH---------H-HH--HH
Confidence            48999999999999999999876642  233333222222222333  357899999975431         1 11  12


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHh---ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM---GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~---~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      .+..+|++++|+|.++..+  ...+..|+..+   ......+.|+++|+||+|+...+.........+....+. .++++
T Consensus        67 ~~~~ad~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~  143 (190)
T cd04144          67 WIREGEGFILVYSITSRST--FERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEA  143 (190)
T ss_pred             HHHhCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEe
Confidence            4667899999999975322  22333444333   221124589999999999975433333334445544454 49999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|++++++++.+.+.
T Consensus       144 SAk~~~~v~~l~~~l~~~l~  163 (190)
T cd04144         144 SAKTNVNVERAFYTLVRALR  163 (190)
T ss_pred             cCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999998764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=99.84  E-value=7.6e-20  Score=164.25  Aligned_cols=161  Identities=16%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...||+++|..|||||||+.++.+..+.  .... ..+.......+..++  ..+.+|||||...+.         .+. 
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~---------~l~-   72 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC---------TIF-   72 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH---------HHH-
Confidence            4589999999999999999999986653  2221 112222222233334  568899999986431         111 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...++.+|++++|+|+++..  ....+..|+.++.... ++.|+++|+||+|+...+....+..+.+.+..+. .+++
T Consensus        73 --~~~~~~ad~illVfD~t~~~--Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e  146 (189)
T cd04121          73 --RSYSRGAQGIILVYDITNRW--SFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFE  146 (189)
T ss_pred             --HHHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEE
Confidence              13357899999999997643  3334556666664332 4689999999999976444444556667666665 4999


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      |||++|.||+++|++|.+.+..
T Consensus       147 ~SAk~g~~V~~~F~~l~~~i~~  168 (189)
T cd04121         147 VSPLCNFNITESFTELARIVLM  168 (189)
T ss_pred             ecCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999987653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04113 Rab4 Rab4 subfamily

Probab=99.84  E-value=3.8e-20  Score=161.74  Aligned_cols=158  Identities=19%  Similarity=0.201  Sum_probs=104.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +||+++|++|||||||+++|.+..+..... +..+.......+..+  ...+.+|||||.....            ....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------------~~~~   67 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ-HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR------------SVTR   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCEEEEEEEEECcchHHHH------------HhHH
Confidence            479999999999999999999877642221 111111111122222  3468899999975321            1112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|+++..  ....+..|+........++.|+++|+||+|+........+....+....+. .++++||
T Consensus        68 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  144 (161)
T cd04113          68 SYYRGAAGALLVYDITNRT--SFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSA  144 (161)
T ss_pred             HHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCC-EEEEEEC
Confidence            3456789999999997632  223445566554433345689999999999976433323334444444554 5999999


Q ss_pred             CCCcChHHHHHHHHHh
Q 014461          298 LKGAGLKALTQYLMEQ  313 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~  313 (424)
                      ++|.|++++++++.+.
T Consensus       145 ~~~~~i~~~~~~~~~~  160 (161)
T cd04113         145 LTGENVEEAFLKCARS  160 (161)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04109 Rab28 Rab28 subfamily

Probab=99.84  E-value=5.6e-20  Score=168.86  Aligned_cols=161  Identities=16%  Similarity=0.176  Sum_probs=106.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      +||+++|.+|||||||+++|.+..+.. ...+..+.+.....+...   ...+.+|||||...+.         ....  
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~---------~l~~--   68 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG---------KMLD--   68 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH---------HHHH--
Confidence            479999999999999999999876642 112222223222223322   3568899999975331         1111  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc---CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK---QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~---~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                       ..+..+|++++|+|+++..+  ...+..|+..+..   ....+.|+++|+||+|+...+....+....+....+. .++
T Consensus        69 -~~~~~ad~iilV~D~t~~~s--~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~  144 (215)
T cd04109          69 -KYIYGAHAVFLVYDVTNSQS--FENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESC  144 (215)
T ss_pred             -HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEE
Confidence             23678999999999975322  2333344443322   2123468999999999975444444445556655565 489


Q ss_pred             EEecCCCcChHHHHHHHHHhccC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++||++|.|++++|++|.+.+..
T Consensus       145 ~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         145 LVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.84  E-value=6.9e-20  Score=166.48  Aligned_cols=162  Identities=21%  Similarity=0.189  Sum_probs=106.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ++|+++|.+|||||||+++|++..+... ..+....+.....+..+   ...+.+|||||...+.         ...   
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~-~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~---------~~~---   67 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH-YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG---------GMT---   67 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh---------hhH---
Confidence            4799999999999999999998765321 11111112222223333   4468899999975331         111   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc----cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG----KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~----~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      ...+..+|++++|+|+++..+  ...+..|+..+.    .....+.|+++|+||+|+........+....+....++..+
T Consensus        68 ~~~~~~a~~~ilv~D~t~~~s--~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (201)
T cd04107          68 RVYYRGAVGAIIVFDVTRPST--FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGW  145 (201)
T ss_pred             HHHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence            234678899999999975322  223333433322    11224589999999999974333334445566666665569


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|+++++++|.+.+..
T Consensus       146 ~e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         146 FETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.84  E-value=5.8e-20  Score=161.13  Aligned_cols=159  Identities=18%  Similarity=0.238  Sum_probs=102.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||+|++++..+.. ...+..+.+.....  .......+.+|||||...+.         . .  ..
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~--~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL---------E-V--RN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH---------H-H--HH
Confidence            479999999999999999999887642 11121111111111  22334578899999975321         1 1  12


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-----CCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-----PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      ..+..+|++++|+|.++..  ....+..|+..+.....     .+.|+++|+||+|+.............+....+. ++
T Consensus        68 ~~~~~~d~~ilv~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  144 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQ--SFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KY  144 (168)
T ss_pred             HHhccCCEEEEEEECCCHH--HHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC-eE
Confidence            2357789999999997532  22334455554432221     3589999999999974322223333334444444 49


Q ss_pred             EEEecCCCcChHHHHHHHHHhc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +++||++|.|+++++++|.+.+
T Consensus       145 ~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         145 FETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04117 Rab15 Rab15 subfamily

Probab=99.84  E-value=1.2e-19  Score=158.95  Aligned_cols=158  Identities=16%  Similarity=0.214  Sum_probs=106.2

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|++|+|||||++++.++.+... ..+....+.....+...+  ..+.+|||||...+..         .   ..
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---------~---~~   67 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT---------I---TK   67 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh---------h---HH
Confidence            3799999999999999999998776421 122222222222233333  4678999999754311         1   11


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|.++.  .....+..|+..+......+.|+++|+||+|+...+....+....+.+..+. +++++||
T Consensus        68 ~~~~~~~~~i~v~d~~~~--~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa  144 (161)
T cd04117          68 QYYRRAQGIFLVYDISSE--RSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSA  144 (161)
T ss_pred             HHhcCCcEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence            235778999999999753  2334455666655433334589999999999976543333445555555554 5999999


Q ss_pred             CCCcChHHHHHHHHHh
Q 014461          298 LKGAGLKALTQYLMEQ  313 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~  313 (424)
                      ++|.|++++|++|.+.
T Consensus       145 ~~~~~v~~~f~~l~~~  160 (161)
T cd04117         145 CTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04133 Rop_like Rop subfamily

Probab=99.83  E-value=8e-20  Score=162.25  Aligned_cols=159  Identities=15%  Similarity=0.157  Sum_probs=109.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +||+++|.+|||||||+.++..+.+.  .....|........+..+  ...+.+|||+|...+....            .
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~------------~   67 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLR------------P   67 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccc------------h
Confidence            57999999999999999999987764  222222222222222233  3568899999986553211            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh----------hhHHHHHHHHhcC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHL  286 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~  286 (424)
                      ..++.+|++++|+|.++..+.  ..+ ..|+.++.... ++.|+++|+||+|+.+.+          ....+..+.+...
T Consensus        68 ~~~~~a~~~ilvyd~~~~~Sf--~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~  144 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASY--ENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ  144 (176)
T ss_pred             hhcCCCcEEEEEEEcCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence            246789999999999764332  233 34666554322 358999999999996532          1334456667766


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+...+++|||++|.||+++|+.+.+.+.
T Consensus       145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         145 IGAAAYIECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence            66656999999999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04158 ARD1 ARD1 subfamily

Probab=99.83  E-value=1.1e-19  Score=160.53  Aligned_cols=159  Identities=15%  Similarity=0.068  Sum_probs=104.4

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|||||||++++.+..+.  .  +.+|.......+...+..+.+|||||...+..            .....+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~------------~~~~~~   64 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP------------LWKHYY   64 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhcch------------HHHHHh
Confidence            5899999999999999999987542  2  22232222233556778899999999864311            112335


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCC-----CCeEEE
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-----YERIFM  294 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~  294 (424)
                      ..+|++++|+|+++..  .......++..+... ...+.|+++|+||+|+... ....+ ...+.....     ...+++
T Consensus        65 ~~ad~ii~V~D~s~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  140 (169)
T cd04158          65 LNTQAVVFVVDSSHRD--RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEE-MTELLSLHKLCCGRSWYIQG  140 (169)
T ss_pred             ccCCEEEEEEeCCcHH--HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHH-HHHHhCCccccCCCcEEEEe
Confidence            7789999999997532  122334444444322 1234789999999999653 12222 223222221     114789


Q ss_pred             EecCCCcChHHHHHHHHHhccCCCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      +||++|.|++++|++|.+.+.++++
T Consensus       141 ~Sa~~g~gv~~~f~~l~~~~~~~~~  165 (169)
T cd04158         141 CDARSGMGLYEGLDWLSRQLVAAGV  165 (169)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhhccc
Confidence            9999999999999999998876654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.83  E-value=8.9e-20  Score=158.94  Aligned_cols=157  Identities=16%  Similarity=0.155  Sum_probs=101.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||+|++++..+.  .....++.......+..++  ..+.+|||||...+.         .+..   
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~l~~---   67 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------AMRD---   67 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH---------HHHH---
Confidence            57999999999999999999987753  2333333332222233333  347789999975431         1111   


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|.++..  ....+..++..+... ...+.|+++|+||+|+... .........+....+. +++++|
T Consensus        68 ~~~~~~~~~i~v~~~~~~~--s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~S  143 (162)
T cd04138          68 QYMRTGEGFLCVFAINSRK--SFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVSSRQGQDLAKSYGI-PYIETS  143 (162)
T ss_pred             HHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-eecHHHHHHHHHHhCC-eEEEec
Confidence            2356789999999997532  222233333332221 1235799999999999763 2222333444444444 499999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|+++++++|.+.+
T Consensus       144 a~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         144 AKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01890 LepA LepA subfamily

Probab=99.83  E-value=6.9e-20  Score=162.96  Aligned_cols=155  Identities=17%  Similarity=0.232  Sum_probs=97.9

Q ss_pred             EEEEEecCCCChhHHHHhHhCCccee--------ecC------CCCceeeEEEEEE-----ecCCccEEEEeCCCcccCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAA--------VSR------KTNTTTHEVLGVM-----TKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~--------~~~------~~~tt~~~~~~~~-----~~~~~~i~l~DtpG~~~~~  201 (424)
                      +|+++|++|+|||||+++|++.....        ..+      ..++|.......+     ...+..+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998642110        000      1123332221112     2345668899999986431


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHH
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE  281 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~  281 (424)
                               ...   ...+..+|++++|+|++++.+.........+..      .+.|+++|+||+|+....  .....+
T Consensus        82 ---------~~~---~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~--~~~~~~  141 (179)
T cd01890          82 ---------YEV---SRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPSAD--PERVKQ  141 (179)
T ss_pred             ---------HHH---HHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCcCC--HHHHHH
Confidence                     112   234567899999999986544333222222221      247899999999986532  112223


Q ss_pred             HHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          282 QFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       282 ~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+.+..+.  ..++++||++|.|+++|+++|.+.++
T Consensus       142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            33333232  24899999999999999999998774

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04125 RabA_like RabA-like subfamily

Probab=99.83  E-value=8.2e-20  Score=164.13  Aligned_cols=161  Identities=20%  Similarity=0.192  Sum_probs=106.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++.+..+.... .+..+.+.....+..+  ...+.+|||||...+.         .   ...
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~---------~---~~~   67 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR---------S---LNN   67 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH---------h---hHH
Confidence            47999999999999999999988764211 1111111111222222  3457899999965321         1   112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|+++.  .....+..|+..+........|+++|+||+|+.+...........+....+. +++++||
T Consensus        68 ~~~~~~d~iilv~d~~~~--~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa  144 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQ--ESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSA  144 (188)
T ss_pred             HHccCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeC
Confidence            346789999999999763  2334455666655443334578999999999975432223333445444455 5999999


Q ss_pred             CCCcChHHHHHHHHHhccC
Q 014461          298 LKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++|.|+++++++|.+.+..
T Consensus       145 ~~~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         145 KQSINVEEAFILLVKLIIK  163 (188)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887753

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=7e-20  Score=158.28  Aligned_cols=163  Identities=18%  Similarity=0.191  Sum_probs=126.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceee--EEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH--EVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~--~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ..-+||+++|.+|||||.|+.++.+..+..   ....|..  .....  +......+.+|||.|+..++           
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e---~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr-----------   72 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTE---SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR-----------   72 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcch---hhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh-----------
Confidence            346899999999999999999999877642   1222221  11222  33344568999999986552           


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                       ..+.++++.|++||+|+|.++  ......+..|+.+.......+.|.++|+||+|+.+.+....+..+.|....+.+.+
T Consensus        73 -tit~syYR~ahGii~vyDiT~--~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f  149 (205)
T KOG0084|consen   73 -TITSSYYRGAHGIIFVYDITK--QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIF  149 (205)
T ss_pred             -hhhHhhccCCCeEEEEEEccc--HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcce
Confidence             223456889999999999986  33445678899998887777789999999999998777777778889988888779


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++|||++.|+++.|..|...+..
T Consensus       150 ~ETSAK~~~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  150 LETSAKDSTNVEDAFLTLAKELKQ  173 (205)
T ss_pred             eecccCCccCHHHHHHHHHHHHHH
Confidence            999999999999999999877754

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.83  E-value=1.3e-19  Score=160.96  Aligned_cols=158  Identities=17%  Similarity=0.171  Sum_probs=104.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||++++..+.+.  .....|........+..++  ..+.+|||||...+..          +.  .
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~   67 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR----------LR--P   67 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh----------hh--h
Confidence            58999999999999999999987763  3333333332222233344  5678999999865421          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~  284 (424)
                      ..+..+|++++|+|.++..+  ...+. .|+..+.... ++.|+++|+||+|+.....            ...+..+.+.
T Consensus        68 ~~~~~a~~~ilv~d~~~~~s--~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a  144 (175)
T cd01874          68 LSYPQTDVFLVCFSVVSPSS--FENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA  144 (175)
T ss_pred             hhcccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence            24678899999999976422  22232 3444443222 3589999999999865321            1122233444


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ...+...+++|||++|.|++++|+.+...+
T Consensus       145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         145 RDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             HHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            444544699999999999999999988743

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.83  E-value=5.9e-20  Score=162.56  Aligned_cols=163  Identities=20%  Similarity=0.234  Sum_probs=107.5

Q ss_pred             EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccc
Q 014461          144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL  222 (424)
Q Consensus       144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (424)
                      ++|++|||||||+|+|.+... .+++.+++|.....+.+... +.++.+|||||+.......     .......+..+..
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~-----~~~~~~~~~~~~~   74 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG-----RGLGNQFLAHIRR   74 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC-----CCccHHHHHHHhc
Confidence            589999999999999999876 46777888877776666666 8899999999985422111     0112233445667


Q ss_pred             ccEEEEEEeCCCCC----CCchHHHHHHHHHhccCC-------CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461          223 FEVLMVVFDVHRHL----TSPDSRVIRLIERMGKQA-------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       223 aD~vl~VvD~~~~~----~~~~~~~~~~l~~~~~~~-------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (424)
                      +|++++|+|+++..    .........+...+....       ..+.|+++|+||+|+................. ....
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~  153 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE-EGAE  153 (176)
T ss_pred             cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC-CCCC
Confidence            89999999997642    122222222222222111       12479999999999976432221111122222 2335


Q ss_pred             EEEEecCCCcChHHHHHHHHHh
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ++++||++|.|++++++++...
T Consensus       154 ~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         154 VVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEEehhhhcCHHHHHHHHHhh
Confidence            9999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=1.2e-19  Score=193.60  Aligned_cols=164  Identities=28%  Similarity=0.363  Sum_probs=126.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ..+|+++|.||||||||+|+|++.+.+.+++.+++|++.......+.+..+.+|||||+......    ........+..
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~----~~~~~~~~~~~  350 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG----IDSAIASQAQI  350 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc----HHHHHHHHHHH
Confidence            46899999999999999999999988889999999999888777778889999999998643211    11223445556


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|++++|+|++.+....+..+.++++..      +.|+++|+||+|+......    ...+.. .++...+++||+
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~------~~pvIlV~NK~D~~~~~~~----~~~~~~-lg~~~~~~iSA~  419 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRA------GKPVVLAVNKIDDQASEYD----AAEFWK-LGLGEPYPISAM  419 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEEECcccccchhh----HHHHHH-cCCCCeEEEECC
Confidence            67889999999999877666666666666542      4899999999998653211    122221 244457899999


Q ss_pred             CCcChHHHHHHHHHhccCC
Q 014461          299 KGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~~~  317 (424)
                      +|.|+++|+++|.+.++..
T Consensus       420 ~g~GI~eLl~~i~~~l~~~  438 (712)
T PRK09518        420 HGRGVGDLLDEALDSLKVA  438 (712)
T ss_pred             CCCCchHHHHHHHHhcccc
Confidence            9999999999999988653

>cd04127 Rab27A Rab27a subfamily

Probab=99.83  E-value=1.2e-19  Score=161.65  Aligned_cols=159  Identities=17%  Similarity=0.193  Sum_probs=104.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEec------------CCccEEEEeCCCcccCCCCCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTK------------ADTQICIFDTPGLMLNKSGYS  205 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~------------~~~~i~l~DtpG~~~~~~~~~  205 (424)
                      .++|+++|.+|||||||++++.+..+..  ....+. .+.....+..            ....+.+|||||...+.    
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----   77 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNP--KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR----   77 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH----
Confidence            4789999999999999999999876532  111111 1111111111            23568899999965321    


Q ss_pred             hhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461          206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFK  284 (424)
Q Consensus       206 ~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~  284 (424)
                              ......++.+|++++|+|+++.  .....+..|+..+.... .++.|+++|+||+|+...+....+....+.
T Consensus        78 --------~~~~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~  147 (180)
T cd04127          78 --------SLTTAFFRDAMGFLLIFDLTNE--QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA  147 (180)
T ss_pred             --------HHHHHHhCCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH
Confidence                    1122346789999999999752  22334555665543321 235789999999999764333334455565


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ...+. +++++||++|.|+++++++|.+.+
T Consensus       148 ~~~~~-~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         148 DKYGI-PYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             HHcCC-eEEEEeCCCCCCHHHHHHHHHHHH
Confidence            55565 499999999999999999998765

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=1.2e-19  Score=184.30  Aligned_cols=160  Identities=26%  Similarity=0.365  Sum_probs=123.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .+|+++|.+|||||||+|+|++...+.+++.+++|++.........+..+.+|||||+.....    .........+...
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~----~~~~~~~~~~~~~   77 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD----GFEKQIREQAELA   77 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch----hHHHHHHHHHHHH
Confidence            479999999999999999999998878889999999888777888889999999999875211    1112233344556


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..+|++++|+|++++.+..+..+.++++..      +.|+++|+||+|+......    ..++. ..++..++++||++
T Consensus        78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSa~~  146 (435)
T PRK00093         78 IEEADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEEAD----AYEFY-SLGLGEPYPISAEH  146 (435)
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccchhh----HHHHH-hcCCCCCEEEEeeC
Confidence            7889999999999877776666777777764      3789999999997652221    12222 23555689999999


Q ss_pred             CcChHHHHHHHHHhc
Q 014461          300 GAGLKALTQYLMEQA  314 (424)
Q Consensus       300 g~gi~~L~~~i~~~l  314 (424)
                      |.|++++++.|.+..
T Consensus       147 g~gv~~l~~~I~~~~  161 (435)
T PRK00093        147 GRGIGDLLDAILEEL  161 (435)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998854

>cd04149 Arf6 Arf6 subfamily

Probab=99.83  E-value=1.7e-19  Score=159.09  Aligned_cols=155  Identities=14%  Similarity=0.086  Sum_probs=99.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..+|+++|.+|||||||+++|....+...  .+.+..+  .......+..+.+|||||...+.         ..   ..
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~~~---------~~---~~   71 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFN--VETVTYKNVKFNVWDVGGQDKIR---------PL---WR   71 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccc--eEEEEECCEEEEEEECCCCHHHH---------HH---HH
Confidence            468999999999999999999987655322  2211111  11233467789999999975321         11   12


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CC-CCeE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PG-YERI  292 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~-~~~~  292 (424)
                      ..+..+|++++|+|+++..+  ...+..++.+.... ...+.|+++|+||+|+... ....+ ++.+...   .. ...+
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~-i~~~~~~~~~~~~~~~~  147 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDR--IDEARQELHRIINDREMRDALLLVFANKQDLPDA-MKPHE-IQEKLGLTRIRDRNWYV  147 (168)
T ss_pred             HHhccCCEEEEEEeCCchhh--HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC-CCHHH-HHHHcCCCccCCCcEEE
Confidence            34678999999999976422  23334444433221 1235799999999998652 11122 2222211   11 1258


Q ss_pred             EEEecCCCcChHHHHHHHHH
Q 014461          293 FMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~  312 (424)
                      +++||++|.|+++++++|.+
T Consensus       148 ~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         148 QPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EEeeCCCCCChHHHHHHHhc
Confidence            99999999999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=3.3e-19  Score=189.77  Aligned_cols=167  Identities=18%  Similarity=0.315  Sum_probs=121.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..+|+++|+||||||||+|+|+|.+. .+++.+++|.+...+.+...+.++.++||||+.+...........+.+.+.+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            357899999999999999999998765 5889999999988888888888999999999976532111011122232323


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .....+|++++|+|+++. .. ...+...+.+.      +.|+++|+||+|+.+.+ ......+.+.+..+.+ ++++||
T Consensus        81 l~~~~aD~vI~VvDat~l-er-~l~l~~ql~e~------giPvIvVlNK~Dl~~~~-~i~id~~~L~~~LG~p-VvpiSA  150 (772)
T PRK09554         81 ILSGDADLLINVVDASNL-ER-NLYLTLQLLEL------GIPCIVALNMLDIAEKQ-NIRIDIDALSARLGCP-VIPLVS  150 (772)
T ss_pred             HhccCCCEEEEEecCCcc-hh-hHHHHHHHHHc------CCCEEEEEEchhhhhcc-CcHHHHHHHHHHhCCC-EEEEEe
Confidence            334578999999999752 22 22233334333      47899999999987542 2233345566666765 999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.|++++++.+.+...
T Consensus       151 ~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        151 TRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             ecCCCHHHHHHHHHHhhh
Confidence            999999999999988764

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.83  E-value=9.5e-20  Score=160.42  Aligned_cols=160  Identities=14%  Similarity=0.158  Sum_probs=101.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ++|+++|.+|||||||+++++...+.. .....+................+.+|||||...+..          ...  .
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~--~   68 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----------LRD--G   68 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----------ccH--H
Confidence            479999999999999999998665421 111111111111111122335688999999864421          101  1


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|++++|+|+++..  ....+..|+..+..... +.|+++|+||+|+.... .. .....+..... ..++++||+
T Consensus        69 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~-~~~~e~Sa~  142 (166)
T cd00877          69 YYIGGQCAIIMFDVTSRV--TYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRK-VK-AKQITFHRKKN-LQYYEISAK  142 (166)
T ss_pred             HhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCC-CCcEEEEEEchhccccc-CC-HHHHHHHHHcC-CEEEEEeCC
Confidence            346789999999997532  22334455555543322 58999999999997432 11 12233433333 359999999


Q ss_pred             CCcChHHHHHHHHHhccCC
Q 014461          299 KGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~~~  317 (424)
                      +|.|+++++++|.+.+...
T Consensus       143 ~~~~v~~~f~~l~~~~~~~  161 (166)
T cd00877         143 SNYNFEKPFLWLARKLLGN  161 (166)
T ss_pred             CCCChHHHHHHHHHHHHhc
Confidence            9999999999999887543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04176 Rap2 Rap2 subgroup

Probab=99.83  E-value=9.8e-20  Score=159.43  Aligned_cols=158  Identities=17%  Similarity=0.134  Sum_probs=101.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++..+.+..  ....|........+..++  ..+.+|||||...+..         ...   
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~---   67 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS---------MRD---   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccc---------hHH---
Confidence            589999999999999999999876642  222222222222233333  3577899999765421         111   


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|.++..+  ...+..|+..+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus        68 ~~~~~ad~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  144 (163)
T cd04176          68 LYIKNGQGFIVVYSLVNQQT--FQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETS  144 (163)
T ss_pred             HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEec
Confidence            13567899999999976322  22333443333221 123589999999999865332222233444443444 589999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|++++++++.+.+
T Consensus       145 a~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         145 AKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            999999999999998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.83  E-value=3.8e-19  Score=178.96  Aligned_cols=162  Identities=27%  Similarity=0.349  Sum_probs=119.1

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ....+++|+++|.||||||||+|+|++...+.+++.++||++.....+..++.++.+|||||+.....    ......+.
T Consensus       199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie~~gi~  274 (442)
T TIGR00450       199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVERLGIE  274 (442)
T ss_pred             HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHHHHHHH
Confidence            34467899999999999999999999988777899999999988887888889999999999865321    00122345


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .+...+..+|++++|+|++++.+..+.    ++.....   .+.|+++|+||+|+...  ..    +.+....+. +++.
T Consensus       275 ~~~~~~~~aD~il~V~D~s~~~s~~~~----~l~~~~~---~~~piIlV~NK~Dl~~~--~~----~~~~~~~~~-~~~~  340 (442)
T TIGR00450       275 KSFKAIKQADLVIYVLDASQPLTKDDF----LIIDLNK---SKKPFILVLNKIDLKIN--SL----EFFVSSKVL-NSSN  340 (442)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCChhHH----HHHHHhh---CCCCEEEEEECccCCCc--ch----hhhhhhcCC-ceEE
Confidence            566778899999999999865543322    3333321   24789999999999653  11    122222333 3889


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++ .||+++++.|.+.+.
T Consensus       341 vSak~-~gI~~~~~~L~~~i~  360 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKIN  360 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHHH
Confidence            99998 588888888777664

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04126 Rab20 Rab20 subfamily

Probab=99.83  E-value=1.5e-19  Score=165.80  Aligned_cols=158  Identities=19%  Similarity=0.208  Sum_probs=102.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ++|+++|.+|||||||++++++..+...  .+  |..............+.+|||||...+..          +..  ..
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~--~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~----------l~~--~~   64 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDT--VS--TVGGAFYLKQWGPYNISIWDTAGREQFHG----------LGS--MY   64 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCC--CC--ccceEEEEEEeeEEEEEEEeCCCcccchh----------hHH--HH
Confidence            4799999999999999999998877421  11  22111122233456789999999864421          111  23


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC-------------------ChhhHHHHH
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-------------------KKKDLLKVA  280 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~-------------------~~~~~~~~~  280 (424)
                      +..+|++|+|+|+++..+  ...+..++..+......+.|+++|+||+|+..                   .+....+..
T Consensus        65 ~~~ad~~IlV~Dvt~~~S--f~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~  142 (220)
T cd04126          65 CRGAAAVILTYDVSNVQS--LEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA  142 (220)
T ss_pred             hccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence            578899999999976432  22333333333222234589999999999965                   122222333


Q ss_pred             HHHhcCCC-------------CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          281 EQFKHLPG-------------YERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       281 ~~~~~~~~-------------~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..+.+..+             ..++++|||++|.||+++|+.+.+.+.
T Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            44443322             135999999999999999999988764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PTZ00369 Ras-like protein; Provisional

Probab=99.83  E-value=1.4e-19  Score=162.73  Aligned_cols=161  Identities=12%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||++++.+..+..  ....|........+..+  ...+.+|||||...+..         ... 
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------l~~-   71 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA---------MRD-   71 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh---------hHH-
Confidence            45899999999999999999999876642  22222222222222223  34577999999865421         111 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ..+..+|++++|+|+++..+  ...+..|+..+... ...+.|+++|+||+|+.............+....+. ++++
T Consensus        72 --~~~~~~d~iilv~D~s~~~s--~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e  146 (189)
T PTZ00369         72 --QYMRTGQGFLCVYSITSRSS--FEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLE  146 (189)
T ss_pred             --HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEE
Confidence              23567899999999976432  22334444433221 123579999999999865422222223334433444 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       147 ~Sak~~~gi~~~~~~l~~~l~  167 (189)
T PTZ00369        147 TSAKQRVNVDEAFYELVREIR  167 (189)
T ss_pred             eeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999998774

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.83  E-value=2.3e-19  Score=177.71  Aligned_cols=255  Identities=18%  Similarity=0.169  Sum_probs=163.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec------------------------CCccEEEEeCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTP  195 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~i~l~Dtp  195 (424)
                      ++|+++|.||||||||+|+|++... .+++++++|..+..+....                        ...++.++|||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            5799999999999999999998876 4688899998887765331                        12457899999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-----------CCch------------------------
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-----------TSPD------------------------  240 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-----------~~~~------------------------  240 (424)
                      |+.....     .....-...+..++.+|++++|+|+....           .++.                        
T Consensus        81 Gl~~ga~-----~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~  155 (396)
T PRK09602         81 GLVPGAH-----EGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEK  155 (396)
T ss_pred             CcCCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9875321     11123445667789999999999996211           0000                        


Q ss_pred             ---------------------------HHHHHHHHHhccC------------------CCCCCcEEEEEecCCCCCChhh
Q 014461          241 ---------------------------SRVIRLIERMGKQ------------------APPKQKRVLCMNKVDLVTKKKD  275 (424)
Q Consensus       241 ---------------------------~~~~~~l~~~~~~------------------~~~~~p~ilV~NK~Dl~~~~~~  275 (424)
                                                 ..+.++|++.+..                  ....+|+++|+||+|+......
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~  235 (396)
T PRK09602        156 FSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN  235 (396)
T ss_pred             HHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH
Confidence                                       0011111111100                  0124899999999997643222


Q ss_pred             HHHHHHHHhcCCCCCeEEEEecCCCcChHH-HHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcc
Q 014461          276 LLKVAEQFKHLPGYERIFMTSGLKGAGLKA-LTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYS  354 (424)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~-L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~  354 (424)
                      +.    .+.+. ++..++++||+.+.++++ +.+.+.++++.+++.|+.+..+++..+  ++|++| +++..+.-  +- 
T Consensus       236 l~----~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g~--~~-  304 (396)
T PRK09602        236 IE----RLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYGG--TG-  304 (396)
T ss_pred             HH----HHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhCC--ch-
Confidence            22    22222 556699999999999999 899999999999999999999988877  789999 88887652  10 


Q ss_pred             eEEEEEEEEeccCCeEEEEEEEEeeC------CCcccEEeccCCchHHHHHHHHHHHHHHhcC
Q 014461          355 IEHRLIDWKDLRDGSLRIEQHLITNK------LSQRKILVGKNGSKIGRIGVEANEELRSIFK  411 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~i~~~i~~~~------~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~  411 (424)
                      +...+....+..=+.+++...---.+      ..-...++=++|++..+.+-..|.++++-|.
T Consensus       305 ~~~~i~~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi  367 (396)
T PRK09602        305 VQEAINTAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFL  367 (396)
T ss_pred             HHHHHHHHHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhce
Confidence            00000000000001222222100000      0111233337799999999999999998774

>cd01889 SelB_euk SelB subfamily

Probab=99.82  E-value=1.8e-19  Score=162.56  Aligned_cols=159  Identities=19%  Similarity=0.312  Sum_probs=103.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCc------ceeecCCCCceeeEEEEEEecC--------------CccEEEEeCCCccc
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGVMTKA--------------DTQICIFDTPGLML  199 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~------~~~~~~~~~tt~~~~~~~~~~~--------------~~~i~l~DtpG~~~  199 (424)
                      .+|+++|++|+|||||+++|++..      ....+..+++|.......+...              +..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            379999999999999999998631      1112233455655443333322              66899999999742


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--h-H
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--D-L  276 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~-~  276 (424)
                                  .....+.....+|++++|+|++++..........+....      +.|+++|+||+|+.....  . .
T Consensus        81 ------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~  142 (192)
T cd01889          81 ------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL------CKKLIVVLNKIDLIPEEERERKI  142 (192)
T ss_pred             ------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHHHHHH
Confidence                        134444556778999999999865443333222322222      368999999999975321  1 1


Q ss_pred             HHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          277 LKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       277 ~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .+..+.+...     ....+++++||++|.|+++|+++|.++++.
T Consensus       143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            2222222111     122359999999999999999999998853

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=8.2e-19  Score=153.89  Aligned_cols=169  Identities=23%  Similarity=0.309  Sum_probs=122.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh-hhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH-KDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~-~~~~~~~~~  215 (424)
                      ...-|+++|.+|||||||||+|++.+ .+.++..||.|+......+   +..+.++|.||+.-....... +....++..
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDELRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            56789999999999999999999965 6889999999987665333   233899999998743221111 112334444


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh---HHHHHHHHhcCCCCC-e
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPGYE-R  291 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~-~  291 (424)
                      ++..-..-.++++++|+.......+..+.+|+.+.+      .|+++|+||+|.....+.   +....+.+....... .
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~------i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~  173 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELG------IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW  173 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence            444444568899999999888888889999999875      889999999999985322   122222332222221 2


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++..|+.++.|++++.+.|.+.+.
T Consensus       174 ~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         174 VVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             EEEEecccccCHHHHHHHHHHHhh
Confidence            788899999999999999988764

>PLN03118 Rab family protein; Provisional

Probab=99.82  E-value=1.7e-19  Score=165.23  Aligned_cols=166  Identities=17%  Similarity=0.146  Sum_probs=104.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ..++|+++|.+|||||||+++|++..+.......+.+.......+......+.+|||||...+.         ...   .
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~---~   80 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR---------TLT---S   80 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH---------HHH---H
Confidence            4689999999999999999999987764333222222221111122233578999999976431         111   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~--~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ..++.+|++++|+|+++..+....  .+...+....  ...+.|+++|+||+|+........+....+....+. .++++
T Consensus        81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~--~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~  157 (211)
T PLN03118         81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYS--TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLEC  157 (211)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEEE
Confidence            235678999999999753221111  1222222221  122468999999999975433222233334333444 48999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ||++|.|+++++++|.+.+...+
T Consensus       158 SAk~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        158 SAKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999886544

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.82  E-value=9.9e-20  Score=163.68  Aligned_cols=158  Identities=21%  Similarity=0.372  Sum_probs=111.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCccee-----------------ecCCCCceeeEEEEEEe--cCCccEEEEeCCCcc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-----------------VSRKTNTTTHEVLGVMT--KADTQICIFDTPGLM  198 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~-----------------~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~  198 (424)
                      +..+|+++|+.++|||||+++|++.....                 .....+.|.......+.  ..+..+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            35789999999999999999998532110                 01112344444444455  678899999999975


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~  278 (424)
                      .+            .......+..+|++++|+|+..+........+..+...+      .|+++|+||+|+..  ..+.+
T Consensus        82 ~f------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~------~p~ivvlNK~D~~~--~~~~~  141 (188)
T PF00009_consen   82 DF------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG------IPIIVVLNKMDLIE--KELEE  141 (188)
T ss_dssp             HH------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-------SEEEEEETCTSSH--HHHHH
T ss_pred             ce------------eecccceecccccceeeeecccccccccccccccccccc------cceEEeeeeccchh--hhHHH
Confidence            32            334445577889999999998877666666666666654      78999999999983  33333


Q ss_pred             HHHHHh----cCCC-----CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          279 VAEQFK----HLPG-----YERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       279 ~~~~~~----~~~~-----~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..+++.    +..+     ..+++++||++|.|+++|++.|.+.+|
T Consensus       142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            333322    1121     346999999999999999999999885

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.82  E-value=2.3e-19  Score=155.93  Aligned_cols=156  Identities=20%  Similarity=0.277  Sum_probs=106.5

Q ss_pred             EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccc
Q 014461          144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF  223 (424)
Q Consensus       144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~a  223 (424)
                      ++|.+|||||||+|++.+.. ..++..+++|.......+..++..+.+|||||+....... ..  .......+.. ..+
T Consensus         1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~--~~~~~~~~~~-~~~   75 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS-ED--EKVARDFLLG-EKP   75 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC-hh--HHHHHHHhcC-CCC
Confidence            57999999999999999876 3466778888877666666777889999999987543211 00  1112222222 588


Q ss_pred             cEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461          224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (424)
Q Consensus       224 D~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi  303 (424)
                      |++++|+|+++.  .....+...+...      +.|+++|+||+|+..... .....+.+....+. +++++||++|.|+
T Consensus        76 d~vi~v~d~~~~--~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~iSa~~~~~~  145 (158)
T cd01879          76 DLIVNVVDATNL--ERNLYLTLQLLEL------GLPVVVALNMIDEAEKRG-IKIDLDKLSELLGV-PVVPTSARKGEGI  145 (158)
T ss_pred             cEEEEEeeCCcc--hhHHHHHHHHHHc------CCCEEEEEehhhhccccc-chhhHHHHHHhhCC-CeEEEEccCCCCH
Confidence            999999999752  2222222233322      478999999999976422 22223344444454 4999999999999


Q ss_pred             HHHHHHHHHhc
Q 014461          304 KALTQYLMEQA  314 (424)
Q Consensus       304 ~~L~~~i~~~l  314 (424)
                      ++++++|.+.+
T Consensus       146 ~~l~~~l~~~~  156 (158)
T cd01879         146 DELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04128 Spg1 Spg1p

Probab=99.82  E-value=2.2e-19  Score=160.52  Aligned_cols=161  Identities=14%  Similarity=0.194  Sum_probs=105.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      +||+++|.+|||||||++++++..+..  ....|.. +.....+..++  ..+.+|||+|...+..         ..   
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~---------~~---   66 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN---------ML---   66 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH---------hh---
Confidence            479999999999999999999877642  2222221 21112233333  4688999999764311         11   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----hhhHHHHHHHHhcCCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~  291 (424)
                      ...+..+|++++|+|+++..  ....+..|+..+........| ++|+||+|+...     .....+..+.+.+..+. +
T Consensus        67 ~~~~~~a~~iilv~D~t~~~--s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~  142 (182)
T cd04128          67 PLVCNDAVAILFMFDLTRKS--TLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-P  142 (182)
T ss_pred             HHHCcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC-E
Confidence            12467899999999997632  223444555555432223456 688999999531     11223445556655564 5


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ++++||++|.|++++|+++.+.+..-+
T Consensus       143 ~~e~SAk~g~~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         143 LIFCSTSHSINVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999998886544

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.82  E-value=2.7e-19  Score=156.34  Aligned_cols=157  Identities=20%  Similarity=0.190  Sum_probs=102.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe----cCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT----KADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ++|+++|.+|+|||||++++.+..+... ..+....+.....+.    .....+.+|||||...+.         . .  
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~-~--   67 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKD-YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD---------A-I--   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH---------H-h--
Confidence            3799999999999999999998765321 111111221111122    224568999999964321         1 1  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....++.+|++++|+|+++..  ....+..|+..+... ..+.|+++|+||+|+........+....+....+. +++++
T Consensus        68 ~~~~~~~~~~~v~v~d~~~~~--s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~  143 (162)
T cd04106          68 TKAYYRGAQACILVFSTTDRE--SFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRT  143 (162)
T ss_pred             HHHHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEE
Confidence            123467889999999997532  223445555554322 23589999999999976433223334445555555 49999


Q ss_pred             ecCCCcChHHHHHHHHHh
Q 014461          296 SGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~  313 (424)
                      ||++|.|+++++++|.+.
T Consensus       144 Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         144 SVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            999999999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.82  E-value=2e-19  Score=158.05  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=99.4

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcce---eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +|+++|++|+|||||+|+|.+....   .......+|.......+..++..+.+|||||.....         .   ...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~---~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR---------S---LWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH---------H---HHH
Confidence            4899999999999999999864321   111222334333334455668899999999975321         1   112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CC--CCe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PG--YER  291 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~--~~~  291 (424)
                      ..+..+|++++|+|+++..  .......++..+... ...+.|+++|+||+|+... ....+..+.+...   .+  ..+
T Consensus        69 ~~~~~~~~~v~vvd~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~  145 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRE--RFEESKSALEKVLRNEALEGVPLLILANKQDLPDA-LSVEEIKEVFQDKAEEIGRRDCL  145 (167)
T ss_pred             HHhCCCCEEEEEEECchHH--HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC-CCHHHHHHHhccccccccCCceE
Confidence            3467889999999996532  122233344333221 1235899999999998664 2222222222211   11  126


Q ss_pred             EEEEecCCCcChHHHHHHHHH
Q 014461          292 IFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      ++++||++|.|+++++++|.+
T Consensus       146 ~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         146 VLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEeeCCCCcCHHHHHHHHhc
Confidence            999999999999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.82  E-value=3.3e-19  Score=156.16  Aligned_cols=159  Identities=21%  Similarity=0.288  Sum_probs=101.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEE--Ee-cCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGV--MT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~--~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ++|+++|.+|||||||++++.+...........++. +.....  +. .....+.+|||||...+         ..+.. 
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~-   70 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY---------SDMVS-   70 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH---------HHHHH-
Confidence            379999999999999999998642111223332321 111111  21 23467899999996432         11222 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                        ..+..+|++++|+|.++..  ....+..|+..+.... .+.|+++|+||+|+...........+.+....+. +++++
T Consensus        71 --~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  144 (164)
T cd04101          71 --NYWESPSVFILVYDVSNKA--SFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKT  144 (164)
T ss_pred             --HHhCCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEE
Confidence              3457889999999997532  2233445555544332 3489999999999965432222223344444444 48999


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||++|.|++++++.|.+.+
T Consensus       145 Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         145 SALRGVGYEEPFESLARAF  163 (164)
T ss_pred             eCCCCCChHHHHHHHHHHh
Confidence            9999999999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.82  E-value=7.7e-19  Score=158.61  Aligned_cols=170  Identities=18%  Similarity=0.256  Sum_probs=112.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~  214 (424)
                      ....+|+++|.+|||||||+|+|++.. ...++..+++|+......  . +.++.+|||||+........ .........
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            356889999999999999999999875 556677777776644322  2 47899999999764321110 011112233


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~  292 (424)
                      ..+.....++++++|+|++.+....+..+..++...      +.|+++++||+|+.....  .....+..+.... ...+
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~  171 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDEV  171 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCce
Confidence            333444456789999998765555444455555443      378999999999976421  1111122222221 2358


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|++++++.|.+.+.+
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999999988754

>cd01863 Rab18 Rab18 subfamily

Probab=99.82  E-value=3.1e-19  Score=155.83  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=101.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ++|+++|++|||||||+|+|.+..+.. .....+.+.......+.....++.+|||||...+.            .....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~~~   68 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR------------TLTSS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh------------hhhHH
Confidence            479999999999999999999876643 22222222222221222334578999999965321            11122


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .++.+|++++|+|.++..+  ...+..|+..+... ...+.|+++|+||+|+....... +....+....++ .++++||
T Consensus        69 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~-~~~~~~~~~~~~-~~~~~Sa  144 (161)
T cd01863          69 YYRGAQGVILVYDVTRRDT--FTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTR-EEGLKFARKHNM-LFIETSA  144 (161)
T ss_pred             HhCCCCEEEEEEECCCHHH--HHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCH-HHHHHHHHHcCC-EEEEEec
Confidence            3567899999999975332  22333444433221 23458899999999997432222 233444444455 4999999


Q ss_pred             CCCcChHHHHHHHHHh
Q 014461          298 LKGAGLKALTQYLMEQ  313 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~  313 (424)
                      ++|.|++++++.+.+.
T Consensus       145 ~~~~gi~~~~~~~~~~  160 (161)
T cd01863         145 KTRDGVQQAFEELVEK  160 (161)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04110 Rab35 Rab35 subfamily

Probab=99.82  E-value=2.9e-19  Score=162.11  Aligned_cols=161  Identities=19%  Similarity=0.185  Sum_probs=105.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|++|||||||++++.+..+... ..+....+.....+...+  ..+.+|||||...+.         .   .
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~---~   71 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGS-YITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR---------T---I   71 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCccccceeEEEEEEECCEEEEEEEEeCCCchhHH---------H---H
Confidence            358999999999999999999998765321 111111111111222223  468899999975321         1   1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|+++.  .....+..|+..+.... +..|+++|+||+|+.............+....+. .++++
T Consensus        72 ~~~~~~~a~~iilv~D~~~~--~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~  147 (199)
T cd04110          72 TSTYYRGTHGVIVVYDVTNG--ESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFET  147 (199)
T ss_pred             HHHHhCCCcEEEEEEECCCH--HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEE
Confidence            12345778999999999763  22334555666554322 3579999999999976433333334444444454 49999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.||++++++|.+.+.
T Consensus       148 Sa~~~~gi~~lf~~l~~~~~  167 (199)
T cd04110         148 SAKENINVEEMFNCITELVL  167 (199)
T ss_pred             ECCCCcCHHHHHHHHHHHHH
Confidence            99999999999999988774

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd00154 Rab Rab family

Probab=99.82  E-value=2.2e-19  Score=155.31  Aligned_cols=156  Identities=21%  Similarity=0.236  Sum_probs=102.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|+|||||+|++.+...... ..+..+.......+.  .....+.+||+||....            .....
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------~~~~~   67 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF------------RSITP   67 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH------------HHHHH
Confidence            4799999999999999999998877543 111111111122222  23467889999997432            11223


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|+++.  .....+..|+..+........|+++|+||+|+........+....+....+. +++++||
T Consensus        68 ~~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa  144 (159)
T cd00154          68 SYYRGAHGAILVYDITNR--ESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSA  144 (159)
T ss_pred             HHhcCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC-eEEEEec
Confidence            345778999999999752  2223344455544433334589999999999963333333444455544444 4999999


Q ss_pred             CCCcChHHHHHHHH
Q 014461          298 LKGAGLKALTQYLM  311 (424)
Q Consensus       298 ~~g~gi~~L~~~i~  311 (424)
                      ++|.|+++++++|.
T Consensus       145 ~~~~~i~~~~~~i~  158 (159)
T cd00154         145 KTGENVEELFQSLA  158 (159)
T ss_pred             CCCCCHHHHHHHHh
Confidence            99999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.82  E-value=3.6e-19  Score=158.72  Aligned_cols=159  Identities=19%  Similarity=0.267  Sum_probs=103.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~  214 (424)
                      .+..+|+++|.+|+|||||+|+|++.. ...++..+++|.+......  + ..+.+|||||+........ .........
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            457899999999999999999999875 5556777777776543322  2 4799999999754321111 011122222


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCCCCe
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYER  291 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~  291 (424)
                      ..+.....+|++++|+|++++.+..+..+..++...      +.|+++|+||+|+.....   ...+..+.+.......+
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            333333457899999999876666555555555442      378999999999975321   12222223332211236


Q ss_pred             EEEEecCCCcChH
Q 014461          292 IFMTSGLKGAGLK  304 (424)
Q Consensus       292 ~~~iSA~~g~gi~  304 (424)
                      +|++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01862 Rab7 Rab7 subfamily

Probab=99.82  E-value=2.9e-19  Score=157.58  Aligned_cols=162  Identities=20%  Similarity=0.197  Sum_probs=103.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|++|||||||+|++.+..+.... .+..+.+.....+...  ...+.+|||||...+.            ....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~~~   67 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ------------SLGV   67 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCc-CCccceEEEEEEEEECCEEEEEEEEeCCChHHHH------------hHHH
Confidence            47999999999999999999987654211 1111212111222233  3457799999975321            1112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHH----hccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER----MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~----~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      ..++.+|++++|+|+++..+  ...+..|...    .......+.|+++|+||+|+..+.....+....+.+..+...++
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  145 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKS--FESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYF  145 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEE
Confidence            34678899999999975322  2223333332    22222235899999999999743222233344555555555699


Q ss_pred             EEecCCCcChHHHHHHHHHhccC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++||++|.|+++++++|.+.+.+
T Consensus       146 ~~Sa~~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         146 ETSAKEAINVEQAFETIARKALE  168 (172)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987643

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK04213 GTP-binding protein; Provisional

Probab=99.82  E-value=6.3e-19  Score=160.02  Aligned_cols=163  Identities=17%  Similarity=0.289  Sum_probs=103.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh---hhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~---~~~~~~~~  214 (424)
                      ...+|+++|.+|||||||+|+|.+..+. ++..+++|+.....  ...  .+.+|||||+..... ...   ........
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSG-VPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEE--eec--ceEEEeCCccccccc-cCHHHHHHHHHHHH
Confidence            4578999999999999999999987753 66777877765432  222  689999999743211 110   11111122


Q ss_pred             HHHh-hcccccEEEEEEeCCCCCCC-----------chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH
Q 014461          215 SAWS-AVNLFEVLMVVFDVHRHLTS-----------PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ  282 (424)
Q Consensus       215 ~~~~-~~~~aD~vl~VvD~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~  282 (424)
                      ..+. .+..+|++++|+|++.....           .+..+...+..      .+.|+++|+||+|+.....   +..++
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~p~iiv~NK~Dl~~~~~---~~~~~  152 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE------LGIPPIVAVNKMDKIKNRD---EVLDE  152 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH------cCCCeEEEEECccccCcHH---HHHHH
Confidence            2222 34567899999998642110           11222333332      1478999999999976431   12222


Q ss_pred             HhcCCCC--------CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          283 FKHLPGY--------ERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       283 ~~~~~~~--------~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +....+.        .+++++||++| |+++++++|.+.+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            2222222        14899999999 999999999988754

>cd04116 Rab9 Rab9 subfamily

Probab=99.82  E-value=3.7e-19  Score=156.93  Aligned_cols=160  Identities=16%  Similarity=0.090  Sum_probs=103.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE--ecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM--TKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...+|+++|.+|||||||++++++..+... ..+..+.......+  ......+.+|||||...+.         ...  
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~--   71 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR---------SLR--   71 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH---------HhH--
Confidence            458999999999999999999998766421 11221222111122  2333467899999975321         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (424)
                       ...++.+|++++|+|.++..+  ...+..|+.++..    ....+.|+++|+||+|+... ....+..+.+....+...
T Consensus        72 -~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~  147 (170)
T cd04116          72 -TPFYRGSDCCLLTFAVDDSQS--FQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-QVSTEEAQAWCRENGDYP  147 (170)
T ss_pred             -HHHhcCCCEEEEEEECCCHHH--HHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-ccCHHHHHHHHHHCCCCe
Confidence             124577899999999975322  2223334333211    12245899999999999642 223334455555555556


Q ss_pred             EEEEecCCCcChHHHHHHHHHh
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ++++||++|.|++++++.+.+.
T Consensus       148 ~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         148 YFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            9999999999999999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.82  E-value=2.7e-19  Score=159.79  Aligned_cols=159  Identities=14%  Similarity=0.178  Sum_probs=108.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||++++.+..+.  .....|........+..+  ...+.+|||+|...+..          +. 
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~----------~~-   70 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----------VR-   70 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh----------hh-
Confidence            4578999999999999999999987764  222223222222222233  34688999999754311          11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHHH
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQ  282 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~  282 (424)
                       ...+..+|++++|+|.++..+  ...+ ..|+..+.... ++.|+++|+||+|+...            +....+..+.
T Consensus        71 -~~~~~~ad~~ilvyDit~~~S--f~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~  146 (182)
T cd04172          71 -PLSYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN  146 (182)
T ss_pred             -hhhcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence             134678999999999976432  2333 35555544322 45899999999998642            1233455677


Q ss_pred             HhcCCCCCeEEEEecCCCcC-hHHHHHHHHHh
Q 014461          283 FKHLPGYERIFMTSGLKGAG-LKALTQYLMEQ  313 (424)
Q Consensus       283 ~~~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~  313 (424)
                      +++..+...+++|||++|.| |+++|+.+.+.
T Consensus       147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         147 MAKQIGAATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence            77777765699999999998 99999998874

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=161.80  Aligned_cols=207  Identities=21%  Similarity=0.319  Sum_probs=145.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ....|+++|.|+||||||+|+|++.+.. +.+++.||..+..+++.+.+.++.++|+||+......     ...+-+..+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~-----g~grG~~vl  135 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASS-----GRGRGRQVL  135 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCccc-----CCCCcceee
Confidence            3468999999999999999999997754 7999999999999999999999999999999865321     111224456


Q ss_pred             hhcccccEEEEEEeCCCCCCC-------------------------------------------chHHHHHHHHHhccCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQA  254 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~-------------------------------------------~~~~~~~~l~~~~~~~  254 (424)
                      ..++.||++++|+|+......                                           ....+...|.+++..+
T Consensus       136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n  215 (365)
T COG1163         136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN  215 (365)
T ss_pred             eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence            678899999999999742210                                           1123333444433221


Q ss_pred             C---------------------CCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          255 P---------------------PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       255 ~---------------------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      .                     ..+|.++|+||+|+... +.+..    +.+.+   +++++||++|.|+++|.+.|.+.
T Consensus       216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~----l~~~~---~~v~isa~~~~nld~L~e~i~~~  287 (365)
T COG1163         216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELER----LARKP---NSVPISAKKGINLDELKERIWDV  287 (365)
T ss_pred             ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHH----HHhcc---ceEEEecccCCCHHHHHHHHHHh
Confidence            1                     14799999999999873 33332    22222   58999999999999999888765


Q ss_pred             ccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCc
Q 014461          314 AVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGS  393 (424)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~  393 (424)
                      +.                                                     .+||+.+-.-+....-.++|-+.|+
T Consensus       288 L~-----------------------------------------------------liRVYtK~~g~~pd~~~PlIlr~Gs  314 (365)
T COG1163         288 LG-----------------------------------------------------LIRVYTKPPGEEPDFDEPLILRRGS  314 (365)
T ss_pred             hC-----------------------------------------------------eEEEEecCCCCCCCCCCCeEEeCCC
Confidence            51                                                     1112211111111222445556689


Q ss_pred             hHHHHHHHHHHHHHHhcC
Q 014461          394 KIGRIGVEANEELRSIFK  411 (424)
Q Consensus       394 ~i~~i~~~~~~~l~~~~~  411 (424)
                      +++.+....|++|.+-|+
T Consensus       315 TV~Dvc~~IH~~l~~~Fr  332 (365)
T COG1163         315 TVGDVCRKIHRDLVENFR  332 (365)
T ss_pred             cHHHHHHHHHHHHHHhcc
Confidence            999999999999999998

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=1.9e-19  Score=175.01  Aligned_cols=177  Identities=24%  Similarity=0.312  Sum_probs=136.8

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ....++.|+++|.||||||||+|+|......+|++.+|||++.....++..|.++.|.||.|+.+....   ......++
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~---~iE~~gI~  340 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESND---GIEALGIE  340 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCC---hhHHHhHH
Confidence            345679999999999999999999999999999999999999999999999999999999999873221   12245688


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC------CCCcEEEEEecCCCCCChhhHHH----HHHHHh
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP------PKQKRVLCMNKVDLVTKKKDLLK----VAEQFK  284 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~------~~~p~ilV~NK~Dl~~~~~~~~~----~~~~~~  284 (424)
                      ++...+..+|++++|+|+....+..+..+.+.+...+....      ...|++++.||+|+...-.....    ..+. .
T Consensus       341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~  419 (531)
T KOG1191|consen  341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-E  419 (531)
T ss_pred             HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-c
Confidence            88899999999999999966666667676777776554322      23789999999999865111111    1111 1


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ....+.....+|+++++|++.|.+.|.+.+.
T Consensus       420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             cCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence            1123344566999999999999999988764

>cd04123 Rab21 Rab21 subfamily

Probab=99.82  E-value=4.5e-19  Score=154.50  Aligned_cols=159  Identities=19%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .||+++|.+|+|||||+|++++..+.. ...+.++.......+...  ...+.+|||||...+.         ...   .
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~---~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH---------ALG---P   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHH---------Hhh---H
Confidence            479999999999999999999877643 111222222222222222  3468899999964321         111   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|+++..  ....+..|+.++......+.|+++|+||+|+........+....+....+.. ++++||
T Consensus        68 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~  144 (162)
T cd04123          68 IYYRDADGAILVYDITDAD--SFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSA  144 (162)
T ss_pred             HHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeC
Confidence            2346789999999997532  2233344444443333335899999999999754322223333344444444 899999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.|+++++++|.+.+
T Consensus       145 ~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         145 KTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03110 Rab GTPase; Provisional

Probab=99.81  E-value=5e-19  Score=162.60  Aligned_cols=162  Identities=15%  Similarity=0.168  Sum_probs=109.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||+++|.+..+.. ...+....+.....+..++  ..+.+|||||...+.         ...  
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~---------~~~--   78 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR---------AIT--   78 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH---------HHH--
Confidence            45799999999999999999999877642 1222222222222233333  478899999975321         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ...++.+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus        79 -~~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~  154 (216)
T PLN03110         79 -SAYYRGAVGALLVYDITKRQ--TFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLET  154 (216)
T ss_pred             -HHHhCCCCEEEEEEECCChH--HHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEE
Confidence             23457889999999997532  233445566555443334689999999999865433333444555555555 49999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       155 SA~~g~~v~~lf~~l~~~i~  174 (216)
T PLN03110        155 SALEATNVEKAFQTILLEIY  174 (216)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988774

>cd04154 Arl2 Arl2 subfamily

Probab=99.81  E-value=5.5e-19  Score=156.54  Aligned_cols=157  Identities=18%  Similarity=0.225  Sum_probs=100.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ....+|+++|++|||||||+++|.+..+....+..+.    ....+..++..+.+|||||.....         ..   .
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~---------~~---~   75 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLR---------PY---W   75 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCCHHHH---------HH---H
Confidence            3568999999999999999999998755432222221    112233457789999999975321         11   1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~  292 (424)
                      ...+..+|++++|+|+++..+  ......++..+.. ....+.|+++|+||+|+.... ...+..+.+...   ....++
T Consensus        76 ~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  152 (173)
T cd04154          76 RNYFESTDALIWVVDSSDRLR--LDDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRI  152 (173)
T ss_pred             HHHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEE
Confidence            234678899999999975321  2223333333321 122358999999999997532 222222222111   122369


Q ss_pred             EEEecCCCcChHHHHHHHHH
Q 014461          293 FMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~  312 (424)
                      +++||++|.|+++++++|.+
T Consensus       153 ~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         153 QPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EeccCCCCcCHHHHHHHHhc
Confidence            99999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04124 RabL2 RabL2 subfamily

Probab=99.81  E-value=4.6e-19  Score=155.15  Aligned_cols=157  Identities=18%  Similarity=0.204  Sum_probs=100.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ++|+++|.+|||||||++++.+..+...... .+.+.......+......+.+|||||...+..         ..   ..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~---~~   68 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT---------MH---AS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh---------hh---HH
Confidence            4799999999999999999998765422111 11111111111222344688999999764321         11   13


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|++++|+|++++.+  ...+..|+..+... .++.|+++|+||+|+...  .. .....+....+. +++++||+
T Consensus        69 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~--~~-~~~~~~~~~~~~-~~~~~Sa~  141 (161)
T cd04124          69 YYHKAHACILVFDVTRKIT--YKNLSKWYEELREY-RPEIPCIVVANKIDLDPS--VT-QKKFNFAEKHNL-PLYYVSAA  141 (161)
T ss_pred             HhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHh-CCCCcEEEEEECccCchh--HH-HHHHHHHHHcCC-eEEEEeCC
Confidence            4678899999999976432  22334455544322 235899999999998542  11 222233333344 58999999


Q ss_pred             CCcChHHHHHHHHHhcc
Q 014461          299 KGAGLKALTQYLMEQAV  315 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~  315 (424)
                      +|.|++++++.+.+.+.
T Consensus       142 ~~~gv~~l~~~l~~~~~  158 (161)
T cd04124         142 DGTNVVKLFQDAIKLAV  158 (161)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987664

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01875 RhoG RhoG subfamily

Probab=99.81  E-value=4e-19  Score=160.17  Aligned_cols=161  Identities=12%  Similarity=0.135  Sum_probs=106.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||+.++..+.+..  ....|........+..+  ...+.+|||+|...+..          +. 
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----------l~-   68 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR----------LR-   68 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh----------hh-
Confidence            35799999999999999999999876632  22222222222112233  34588999999865421          11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHHHH
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAEQ  282 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~~  282 (424)
                       ...+..+|++++|+|+++..+  ...+. .|+..+... .++.|+++|+||+|+.+....            ..+..+.
T Consensus        69 -~~~~~~a~~~ilvydit~~~S--f~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~  144 (191)
T cd01875          69 -TLSYPQTNVFIICFSIASPSS--YENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA  144 (191)
T ss_pred             -hhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence             124678999999999976432  22332 344443322 236899999999999654211            1223445


Q ss_pred             HhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +....+...++++||++|.||+++|++|.+.+.
T Consensus       145 ~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence            555555446999999999999999999998774

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.81  E-value=2.7e-19  Score=158.41  Aligned_cols=156  Identities=15%  Similarity=0.169  Sum_probs=102.4

Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      |+++|.+|||||||++++.+..+..  ....+...........++  ..+.+|||||...+..          +.  ...
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~--~~~   66 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR----------LR--PLS   66 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch----------hc--hhh
Confidence            5799999999999999999877642  222222222222233333  3588999999764421          11  123


Q ss_pred             cccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHhcC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKHL  286 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~~~  286 (424)
                      +..+|++++|+|+++..+  ...+ ..|+..+... .++.|+++|+||+|+.....            ...+....+...
T Consensus        67 ~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  143 (174)
T smart00174       67 YPDTDVFLICFSVDSPAS--FENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR  143 (174)
T ss_pred             cCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence            567899999999975322  2222 2344444332 23689999999999975322            112233445555


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+...+++|||++|.|++++++.+.+.+
T Consensus       144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      144 IGAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            6665699999999999999999998775

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01892 Miro2 Miro2 subfamily

Probab=99.81  E-value=3.6e-19  Score=157.24  Aligned_cols=161  Identities=13%  Similarity=0.101  Sum_probs=107.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      +.++|+++|.+|||||||++++++..+. +....+|+... ....+..++  ..+.+|||+|.......           
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------   70 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL-----------   70 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc-----------
Confidence            5689999999999999999999988764 12333333221 112222333  46789999997643210           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ....+..+|++++|+|++++  .....+..++..+..  ..+.|+++|+||+|+.+.........+.+.+..+...+++
T Consensus        71 -~~~~~~~~d~~llv~d~~~~--~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  145 (169)
T cd01892          71 -NDAELAACDVACLVYDSSDP--KSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLH  145 (169)
T ss_pred             -chhhhhcCCEEEEEEeCCCH--HHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEE
Confidence             11235788999999999753  222344455655422  1258999999999996543222222344555556555799


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|++++++.|.+.+.
T Consensus       146 ~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         146 FSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             EEeccCccHHHHHHHHHHHhh
Confidence            999999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04131 Rnd Rnd subfamily

Probab=99.81  E-value=3.4e-19  Score=158.69  Aligned_cols=157  Identities=14%  Similarity=0.163  Sum_probs=106.2

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||++++.+..+.  .....|........+..+  ...+.+|||+|...+..          +.  .
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~----------~~--~   67 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN----------VR--P   67 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh----------cc--h
Confidence            58999999999999999999987664  222233222222222233  34578999999754321          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHH-HHHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSR-VIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~-~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~~  284 (424)
                      ..+..+|++++|+|.++..+.  .. ...|+..+.... ++.|+++|+||+|+...            .....+..+.++
T Consensus        68 ~~~~~a~~~ilvfdit~~~Sf--~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a  144 (178)
T cd04131          68 LCYPDSDAVLICFDISRPETL--DSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA  144 (178)
T ss_pred             hhcCCCCEEEEEEECCChhhH--HHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence            246789999999999764332  22 235555444332 35899999999998641            123344566777


Q ss_pred             cCCCCCeEEEEecCCCcC-hHHHHHHHHHh
Q 014461          285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQ  313 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~  313 (424)
                      +..+...+++|||++|+| |+++|+.+.+.
T Consensus       145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence            777765699999999995 99999998874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04114 Rab30 Rab30 subfamily

Probab=99.81  E-value=6.9e-19  Score=154.90  Aligned_cols=161  Identities=16%  Similarity=0.166  Sum_probs=104.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...+|+++|.+|||||||++++.+..+.. ...+..+.+.....+...+  ..+.+|||||...+.         .   .
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~---~   72 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR---------S---I   72 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH---------H---H
Confidence            35889999999999999999998765431 1222222222222333444  457899999975321         1   1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+.......+.+..... ..++++
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~  149 (169)
T cd04114          73 TQSYYRSANALILTYDITCEE--SFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLET  149 (169)
T ss_pred             HHHHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEe
Confidence            123467789999999996532  22233445444332223357899999999997543333334445554444 358999


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||++|.|+++++++|.+.+
T Consensus       150 Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         150 SAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.81  E-value=5.2e-19  Score=158.44  Aligned_cols=158  Identities=14%  Similarity=0.125  Sum_probs=102.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|.+|||||||+|++.+..+....    +|.......+..++.++.+|||||.....         ...   
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~---   78 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQAR---------RLW---   78 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHHH---------HHH---
Confidence            45689999999999999999999987654322    22222333445567889999999975321         111   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---------
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---------  286 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---------  286 (424)
                      ...+..+|++++|+|+++..  .......++.++.. ....+.|+++|+||+|+... ....+..+.+.-.         
T Consensus        79 ~~~~~~ad~ii~vvD~~~~~--~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~~~~  155 (184)
T smart00178       79 KDYFPEVNGIVYLVDAYDKE--RFAESKRELDALLSDEELATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSKGKV  155 (184)
T ss_pred             HHHhCCCCEEEEEEECCcHH--HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-CCHHHHHHHcCCCccccccccc
Confidence            23467899999999997531  11222233333221 11235799999999998643 1122222222110         


Q ss_pred             -CCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          287 -PGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       287 -~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                       .....+++|||++|.|++++++||.+.
T Consensus       156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             CCceeEEEEeecccCCChHHHHHHHHhh
Confidence             123359999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.81  E-value=5.6e-19  Score=154.37  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=96.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .||+++|.+|||||||++++....+..  ..| |+... ...+......+.+|||||...+.         .   .....
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~--~~p-t~g~~-~~~~~~~~~~~~l~D~~G~~~~~---------~---~~~~~   64 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP-TIGFN-VETVEYKNISFTVWDVGGQDKIR---------P---LWRHY   64 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc--cCC-CCCcc-eEEEEECCEEEEEEECCCCHhHH---------H---HHHHH
Confidence            379999999999999999997655532  122 22111 12244567789999999975321         1   11234


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--CC-CCCeEEEE
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--LP-GYERIFMT  295 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~-~~~~~~~i  295 (424)
                      +..+|++++|+|+++..  ......+++..+. .....+.|+++++||+|+.+.. ...+....+..  .. ....++++
T Consensus        65 ~~~ad~~i~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~  141 (159)
T cd04150          65 FQNTQGLIFVVDSNDRE--RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM-SAAEVTDKLGLHSLRNRNWYIQAT  141 (159)
T ss_pred             hcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC-CHHHHHHHhCccccCCCCEEEEEe
Confidence            68899999999997532  1222333333332 1112247999999999996531 12222333321  01 11247899


Q ss_pred             ecCCCcChHHHHHHHHH
Q 014461          296 SGLKGAGLKALTQYLME  312 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~  312 (424)
                      ||++|.|+++++++|.+
T Consensus       142 Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         142 CATSGDGLYEGLDWLSN  158 (159)
T ss_pred             eCCCCCCHHHHHHHHhc
Confidence            99999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.81  E-value=4.5e-19  Score=157.38  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=101.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||+.+++.+.+.  .....+........+..++  ..+.+|||||...+..          +.  .
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~   67 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----------LR--P   67 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh----------hh--h
Confidence            58999999999999999999987653  2222222222111222333  5688999999754321          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~  284 (424)
                      ..+..+|++|+|+|+++..+  ...+. .|+..+... .++.|+++|+||+|+...+.            ...+....+.
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s--f~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  144 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPAS--FENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  144 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence            24678999999999976422  22222 344433322 23589999999999965321            1123334455


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ...+...+++|||++|.|++++|+.+.+.
T Consensus       145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         145 KEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            55554469999999999999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.81  E-value=9.6e-19  Score=153.65  Aligned_cols=155  Identities=19%  Similarity=0.234  Sum_probs=102.0

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec---CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .|+++|.+|+|||||+|+|.+..+.. ...+++|.......+..   .+..+.+|||||...+.         ...   .
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~---------~~~---~   68 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT---------NMR---A   68 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH---------HHH---H
Confidence            58999999999999999999877653 23334554443333333   36789999999974321         111   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHhc-----CCCCCe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKH-----LPGYER  291 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~-----~~~~~~  291 (424)
                      ..+..+|++++|+|++++..........++...      +.|+++|+||+|+.... .........+..     .....+
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAA------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ  142 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence            234678999999999865433333333444432      47899999999987532 122222222221     111235


Q ss_pred             EEEEecCCCcChHHHHHHHHHhc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++++||++|.|+++++++|.+..
T Consensus       143 ~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         143 IVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             EEEeecccCCCHHHHHHHHHHhh
Confidence            99999999999999999998765

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.81  E-value=4.5e-19  Score=156.80  Aligned_cols=159  Identities=16%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +|+++|.+|||||||+++++++.+.  .....|.. ......+...  ...+.+|||||...+.         .   ...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~---~~~   67 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK---------C---IAS   67 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH---------h---hHH
Confidence            6999999999999999999987664  22222221 2221222223  3468999999975431         1   112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~  294 (424)
                      ..++.+|++++|+|+++.  .....+..|+..+... .....|+++|+||+|+.....  ...+....+....+. ++++
T Consensus        68 ~~~~~ad~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e  144 (170)
T cd04108          68 TYYRGAQAIIIVFDLTDV--ASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWS  144 (170)
T ss_pred             HHhcCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEE
Confidence            346789999999999652  2233445666654322 222367899999999865322  123333444444444 4899


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +||++|.|++++++.|.+.+.+
T Consensus       145 ~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         145 VSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999987754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04134 Rho3 Rho3 subfamily

Probab=99.81  E-value=4.4e-19  Score=159.60  Aligned_cols=160  Identities=18%  Similarity=0.169  Sum_probs=103.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||++++.+..+...  ...|...........+  ...+.+|||||...+..          +..  
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----------l~~--   66 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----------LRS--   66 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----------ccc--
Confidence            3799999999999999999998776432  1122111111122223  35689999999864321          111  


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhhH------------HHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~------------~~~~~~~~  284 (424)
                      ..+..+|++++|+|+++..+.  ..+. .|+..+... .++.|+++|+||+|+.......            .+....+.
T Consensus        67 ~~~~~a~~~ilv~dv~~~~sf--~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  143 (189)
T cd04134          67 LSYADTDVIMLCFSVDSPDSL--ENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA  143 (189)
T ss_pred             ccccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence            235678999999999764322  2221 344444332 2358999999999997643211            11223344


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ...+...+++|||++|.|++++|++|.+.+..
T Consensus       144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         144 KRINALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             HHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            34444459999999999999999999988753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.81  E-value=7.4e-19  Score=157.23  Aligned_cols=157  Identities=18%  Similarity=0.272  Sum_probs=104.6

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeec---------------CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS  205 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~---------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~  205 (424)
                      +|+++|.+|+|||||+|+|++.......               ...++|.......+...+..+.+|||||+...     
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence            4899999999999999999876544221               12234444444445556778999999997532     


Q ss_pred             hhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHHHHH
Q 014461          206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQF  283 (424)
Q Consensus       206 ~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~  283 (424)
                             .......+..+|++++|+|++.+...........+..      .+.|+++|+||+|+....  ..........
T Consensus        76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~  142 (189)
T cd00881          76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKEL  142 (189)
T ss_pred             -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHH
Confidence                   1112234567899999999976554433333333333      247899999999998631  1112222222


Q ss_pred             hcCC-------------CCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          284 KHLP-------------GYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       284 ~~~~-------------~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ....             ...+++++||++|.|+++++++|.+.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            2221             2346999999999999999999999875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.81  E-value=6.1e-19  Score=162.77  Aligned_cols=162  Identities=13%  Similarity=0.155  Sum_probs=109.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||++++.+..+.  .....|........+..  ....+.+|||+|...+.      .    +. 
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~------~----~~-   78 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD------N----VR-   78 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH------H----HH-
Confidence            3579999999999999999999987664  22222222222111222  33568899999975431      0    11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHHHH
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQF  283 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~  283 (424)
                       ...+..+|++++|+|+++..+... .+..|+.++.... ++.|+++|+||+|+...            .....+..+.+
T Consensus        79 -~~~~~~ad~vIlVyDit~~~Sf~~-~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~  155 (232)
T cd04174          79 -PLCYSDSDAVLLCFDISRPETVDS-ALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL  155 (232)
T ss_pred             -HHHcCCCcEEEEEEECCChHHHHH-HHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence             134678999999999976433221 1234555544322 35799999999998641            22334556777


Q ss_pred             hcCCCCCeEEEEecCCCc-ChHHHHHHHHHhcc
Q 014461          284 KHLPGYERIFMTSGLKGA-GLKALTQYLMEQAV  315 (424)
Q Consensus       284 ~~~~~~~~~~~iSA~~g~-gi~~L~~~i~~~l~  315 (424)
                      ++..+...+++|||++|. ||+++|+.+...+.
T Consensus       156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~  188 (232)
T cd04174         156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL  188 (232)
T ss_pred             HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence            777777569999999998 89999999987664

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04177 RSR1 RSR1 subgroup

Probab=99.81  E-value=6.5e-19  Score=155.26  Aligned_cols=159  Identities=18%  Similarity=0.146  Sum_probs=102.2

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++.+..+.  .....++.......+..+  ...+.+|||||...+..         ...   
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~---   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA---------MRE---   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh---------hhH---
Confidence            57999999999999999999977653  222233322222222333  35678999999765421         111   


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|.++..+  ......|...+.. ....+.|+++|+||+|+...+....+....+....+..+++++|
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s--~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S  145 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEAS--LNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETS  145 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEee
Confidence            12456799999999975321  1222233332221 12235899999999999764433333333444444544699999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|++++++++...+
T Consensus       146 A~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         146 ARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.81  E-value=2.2e-19  Score=157.66  Aligned_cols=159  Identities=16%  Similarity=0.246  Sum_probs=99.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +|+++|.+|||||||+++++...+.  ...+.++..........++  ..+.+|||||......        ...   ..
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~---~~   67 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT--------EQL---ER   67 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCccccc--------chH---HH
Confidence            4899999999999999999876553  2333333222222222333  3578999999863210        011   12


Q ss_pred             hcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .++.+|++++|+|+++..+... ..+..++..... ...+.|+++|+||+|+...+....+....+....+. +++++||
T Consensus        68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa  145 (165)
T cd04146          68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSA  145 (165)
T ss_pred             HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeCC
Confidence            3567899999999976422211 123333443321 123589999999999865322222334444444454 5999999


Q ss_pred             CCC-cChHHHHHHHHHhc
Q 014461          298 LKG-AGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g-~gi~~L~~~i~~~l  314 (424)
                      ++| .|++++|+.|.+.+
T Consensus       146 ~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         146 AEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CCCchhHHHHHHHHHHHH
Confidence            999 49999999998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.81  E-value=6.9e-19  Score=157.83  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=105.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ++|+++|.+|||||||++++.+..+.  .....+........+...   ...+.+|||||...+.         . .  .
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~---------~-~--~   66 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD---------R-L--R   66 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH---------H-H--H
Confidence            47999999999999999999987764  223333322222222222   3468899999975321         0 1  1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh----hhHHHHHHHHhcCCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~  291 (424)
                      ...+..+|++++|+|+++..+  ...+. .|+...... .++.|+++|+||+|+....    .......+.+....+..+
T Consensus        67 ~~~~~~ad~ii~v~d~~~~~s--~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (187)
T cd04132          67 PLSYPDVDVLLICYAVDNPTS--LDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFA  143 (187)
T ss_pred             HHhCCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcE
Confidence            124678999999999975322  22222 344443322 2358999999999986532    112334455555556646


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++++||++|.|++++++.+.+.+..
T Consensus       144 ~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         144 YLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             EEEccCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.81  E-value=8.8e-19  Score=155.66  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=99.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..+|+++|.+|||||||++++..+.+..  ..+ |+... .......+..+.+|||||...+.         .   ...
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~--~~~-t~~~~-~~~~~~~~~~l~l~D~~G~~~~~---------~---~~~   75 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVT--TIP-TIGFN-VETVTYKNISFTVWDVGGQDKIR---------P---LWR   75 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCC--cCC-ccccc-eEEEEECCEEEEEEECCCChhhH---------H---HHH
Confidence            46899999999999999999997655421  122 22111 12234566789999999975421         1   112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--C-CCCCeEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERIF  293 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~~  293 (424)
                      ..+..+|++++|+|++++.  ......+++..+.. ....+.|+++|+||+|+.+.. ...+..+.+..  . .....++
T Consensus        76 ~~~~~ad~ii~v~D~t~~~--s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~  152 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRD--RIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-KAAEITEKLGLHSIRDRNWYIQ  152 (175)
T ss_pred             HHhCCCCEEEEEEECCCHH--HHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-CHHHHHHHhCccccCCCcEEEE
Confidence            2367899999999997532  12233344444322 112357999999999997532 11222222210  0 0112377


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++||++|.|+++++++|.+.+
T Consensus       153 ~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      153 PTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             EeeCCCCCCHHHHHHHHHHHh
Confidence            899999999999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.81  E-value=5.4e-19  Score=151.22  Aligned_cols=140  Identities=20%  Similarity=0.260  Sum_probs=92.9

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|||||||+|+|.+....    ... |..     .....   .+|||||....        ....+......+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~-----~~~~~---~~iDt~G~~~~--------~~~~~~~~~~~~   60 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQA-----VEYND---GAIDTPGEYVE--------NRRLYSALIVTA   60 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc----ccc-cee-----EEEcC---eeecCchhhhh--------hHHHHHHHHHHh
Confidence            7999999999999999999987642    111 111     11222   68999997311        111233333457


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g  300 (424)
                      +.+|++++|+|++++.+.....   ++...      ..|+++|+||+|+.+.. ...+..+.+.+..+..+++++||++|
T Consensus        61 ~~ad~vilv~d~~~~~s~~~~~---~~~~~------~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~  130 (142)
T TIGR02528        61 ADADVIALVQSATDPESRFPPG---FASIF------VKPVIGLVTKIDLAEAD-VDIERAKELLETAGAEPIFEISSVDE  130 (142)
T ss_pred             hcCCEEEEEecCCCCCcCCChh---HHHhc------cCCeEEEEEeeccCCcc-cCHHHHHHHHHHcCCCcEEEEecCCC
Confidence            8899999999998766544332   22222      14899999999997532 22233344443445546999999999


Q ss_pred             cChHHHHHHHH
Q 014461          301 AGLKALTQYLM  311 (424)
Q Consensus       301 ~gi~~L~~~i~  311 (424)
                      .|+++++++|.
T Consensus       131 ~gi~~l~~~l~  141 (142)
T TIGR02528       131 QGLEALVDYLN  141 (142)
T ss_pred             CCHHHHHHHHh
Confidence            99999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.81  E-value=7.7e-19  Score=164.18  Aligned_cols=159  Identities=21%  Similarity=0.217  Sum_probs=102.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++++..+..  ....|+.+.....+..++  ..+.+|||+|...+.         . +..  
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~---------~-~~~--   66 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP---------A-MRR--   66 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh---------H-HHH--
Confidence            379999999999999999999877642  333333333333333444  567899999975431         1 111  


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc---------CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK---------QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG  288 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~---------~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~  288 (424)
                      ..+..+|++++|+|+++..  ....+..|+.++..         ....+.|+++|+||+|+...+....+....+.....
T Consensus        67 ~~~~~ad~iIlVfdv~~~~--Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~  144 (247)
T cd04143          67 LSILTGDVFILVFSLDNRE--SFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDE  144 (247)
T ss_pred             HHhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcC
Confidence            2356789999999997532  22233333333321         122358999999999997532222222333322222


Q ss_pred             CCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          289 YERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       289 ~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ...++++||++|.|+++++++|...+
T Consensus       145 ~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         145 NCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            23599999999999999999999876

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04157 Arl6 Arl6 subfamily

Probab=99.81  E-value=7.7e-19  Score=153.34  Aligned_cols=153  Identities=19%  Similarity=0.236  Sum_probs=95.6

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcc--eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~--~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +|+++|.+|||||||+++|.+...  ....+..+.+    ...+...+..+.+|||||...+.         ...   ..
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~---------~~~---~~   64 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQGKYR---------GLW---EH   64 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc----eEEEEECCEEEEEEECCCCHhhH---------HHH---HH
Confidence            489999999999999999998642  1222222222    12234567789999999975431         111   12


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCChhhHHHHHHHHh--cCCC-CCeE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLPG-YERI  292 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~  292 (424)
                      .+..+|++++|+|+++..+.  .....++..+...   ...+.|+++|+||+|+.... ...+..+.+.  .... ...+
T Consensus        65 ~~~~~d~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~  141 (162)
T cd04157          65 YYKNIQGIIFVIDSSDRLRL--VVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-TAVKITQLLGLENIKDKPWHI  141 (162)
T ss_pred             HHccCCEEEEEEeCCcHHHH--HHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-CHHHHHHHhCCccccCceEEE
Confidence            35789999999999754221  2222333332211   12358999999999997532 1122222211  1111 1148


Q ss_pred             EEEecCCCcChHHHHHHHHH
Q 014461          293 FMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~  312 (424)
                      +++||++|.|+++++++|.+
T Consensus       142 ~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         142 FASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EEeeCCCCCchHHHHHHHhc
Confidence            99999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04111 Rab39 Rab39 subfamily

Probab=99.80  E-value=9.4e-19  Score=160.18  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=108.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-C--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-A--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .++|+++|.+|||||||++++++..+..... +..+.+.....+.. .  ...+.+|||||.....            ..
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~------------~~   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR------------SI   68 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH------------HH
Confidence            3789999999999999999999877653322 22222222222222 2  3468899999975321            11


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      ....+..+|++++|+|+++..  ....+.+|+.++.... ....|+++|+||+|+........+....+.+..+. .+++
T Consensus        69 ~~~~~~~~d~iilv~D~~~~~--Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e  145 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRE--SFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIE  145 (211)
T ss_pred             HHHHhcCCcEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEE
Confidence            123467789999999997532  2234455565543222 22467899999999976433334445556655564 5999


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +||++|.|+++++++|.+.+..
T Consensus       146 ~Sak~g~~v~e~f~~l~~~~~~  167 (211)
T cd04111         146 TSARTGDNVEEAFELLTQEIYE  167 (211)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999987643

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.80  E-value=7e-19  Score=153.72  Aligned_cols=158  Identities=18%  Similarity=0.107  Sum_probs=100.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||+++++...+.  ....+++..........+  ...+.+|||||.....         .   ...
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~---~~~   66 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA---------A---IRD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh---------H---HHH
Confidence            47999999999999999999977654  233333333322222333  3468899999975431         1   111


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|.++..  .......++..+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus        67 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S  143 (164)
T cd04139          67 NYHRSGEGFLLVFSITDME--SFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETS  143 (164)
T ss_pred             HHhhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEee
Confidence            2456789999999986422  112222333322221 123589999999999976322222222333333344 599999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|+++++++|.+.+
T Consensus       144 a~~~~gi~~l~~~l~~~~  161 (164)
T cd04139         144 AKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998776

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=8.2e-19  Score=151.07  Aligned_cols=164  Identities=18%  Similarity=0.170  Sum_probs=119.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee--eEEEE--EEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT--HEVLG--VMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~--~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      .+..|++++|..+|||||||++++...+..   ..+.|.  +-...  .+......+.+|||.|+..++...        
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~---~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli--------   88 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------   88 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcc---cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh--------
Confidence            456899999999999999999999776642   112221  11111  233344568999999998764321        


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCC-CcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK-QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~-~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (424)
                          -.+++++.++|+|+|.++..  ......+|++.+......+ .-+++|+||.||.+.++...+..+......+. .
T Consensus        89 ----psY~Rds~vaviVyDit~~~--Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~  161 (221)
T KOG0094|consen   89 ----PSYIRDSSVAVIVYDITDRN--SFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-E  161 (221)
T ss_pred             ----hhhccCCeEEEEEEeccccc--hHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-E
Confidence                13578899999999998643  3455667887776555443 66788999999998876666666666666666 4


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ++++||+.|.||.+||..|...++...
T Consensus       162 f~etsak~g~NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  162 FIETSAKAGENVKQLFRRIAAALPGME  188 (221)
T ss_pred             EEEecccCCCCHHHHHHHHHHhccCcc
Confidence            999999999999999999998886543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.80  E-value=3.6e-19  Score=162.62  Aligned_cols=160  Identities=18%  Similarity=0.273  Sum_probs=106.3

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceee------------------------------cCCCCceeeEEEEEEecCCccEE
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKADTQIC  190 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~~~i~  190 (424)
                      +|+++|++|+|||||+++|+.......                              ....++|++.....+...+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999975322211                              11256777777667778888999


Q ss_pred             EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      +|||||+..+            .......+..+|++++|+|++.+..........++...+     ..++|+|+||+|+.
T Consensus        81 liDTpG~~~~------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~-----~~~iIvviNK~D~~  143 (208)
T cd04166          81 IADTPGHEQY------------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLG-----IRHVVVAVNKMDLV  143 (208)
T ss_pred             EEECCcHHHH------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcC-----CCcEEEEEEchhcc
Confidence            9999997432            122334567899999999998765444444444444432     13578899999997


Q ss_pred             CChh-hH---HHHHHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCC
Q 014461          271 TKKK-DL---LKVAEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPL  324 (424)
Q Consensus       271 ~~~~-~~---~~~~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~  324 (424)
                      .... ..   ....+.+....++  .+++++||++|.|+++..       ...+|++++.
T Consensus       144 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~-------~~~~w~~g~~  196 (208)
T cd04166         144 DYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS-------ENMPWYSGPT  196 (208)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC-------CCCCCCCCCc
Confidence            5322 12   2223333333343  358999999999998542       3567877654

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.80  E-value=9.5e-19  Score=158.61  Aligned_cols=165  Identities=15%  Similarity=0.077  Sum_probs=103.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +|+++|.+|||||||++++++..+.  .....++.......+...+  ..+.+|||||...+.         . +.  ..
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~-~~--~~   66 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP---------A-MR--KL   66 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh---------H-HH--HH
Confidence            5899999999999999999987764  2233333222222333444  468899999975431         1 11  12


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCC-hhhHH-HHHHHHhcCCCCCeEEEE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTK-KKDLL-KVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~i  295 (424)
                      .+..+|++++|+|+++..+  ...+..++..+.... ..+.|+++|+||+|+... ..... ...+......+ ..++++
T Consensus        67 ~~~~ad~vilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~-~~~~~~  143 (198)
T cd04147          67 SIQNSDAFALVYAVDDPES--FEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN-CGFVET  143 (198)
T ss_pred             HhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC-CcEEEe
Confidence            4577899999999975322  222333333322211 135899999999999653 21111 11111211222 348999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                      ||++|.|+++++++|.+.+...++.+|
T Consensus       144 Sa~~g~gv~~l~~~l~~~~~~~~~~~~  170 (198)
T cd04147         144 SAKDNENVLEVFKELLRQANLPYNLSP  170 (198)
T ss_pred             cCCCCCCHHHHHHHHHHHhhcccccch
Confidence            999999999999999998876555443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=99.80  E-value=9.4e-19  Score=153.97  Aligned_cols=157  Identities=18%  Similarity=0.174  Sum_probs=99.3

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ||+++|.+|||||||+|++.++.+...  .+.+.... ....+.....++.+|||||.....            ......
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~~~~~~   67 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR------------ANLAAE   67 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc--CCCcccceEeeeeecCCeEEEEEEeCCCchhhh------------HHHhhh
Confidence            799999999999999999998776422  22222111 111233355678999999975431            111233


Q ss_pred             cccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChhh--HHHHHHHHhcC-CCCCeEEEE
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVAEQFKHL-PGYERIFMT  295 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~-~~~~~~~~i  295 (424)
                      +..+|++++|+|++++.+.  ..+ ..|+..+.... ++.|+++|+||+|+.+....  .......+... .....++++
T Consensus        68 ~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  144 (166)
T cd01893          68 IRKANVICLVYSVDRPSTL--ERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVEC  144 (166)
T ss_pred             cccCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEe
Confidence            5779999999999753322  221 12333332211 25899999999999764321  12222222211 122369999


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||++|.|++++++.+.+.+
T Consensus       145 Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         145 SAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             ccccccCHHHHHHHHHHHh
Confidence            9999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.80  E-value=1.3e-18  Score=154.37  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=99.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..+|+++|.+|+|||||++++.+..+....+..+.    ....+..++..+.+|||||.....         ...   .
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~l~D~~G~~~~~---------~~~---~   77 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGS----NVEEIVYKNIRFLMWDIGGQESLR---------SSW---N   77 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCeEEEEEECCCCHHHH---------HHH---H
Confidence            357899999999999999999987766432222222    223344567889999999975321         111   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCeE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYERI  292 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~  292 (424)
                      ..+..+|++++|+|+++..+  ......++.+.. .....+.|+++++||+|+... ....+..+.+..    .... ++
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~--~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~-~~~~~i~~~l~~~~~~~~~~-~~  153 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRER--LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA-MTPAEISESLGLTSIRDHTW-HI  153 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC-CCHHHHHHHhCcccccCCce-EE
Confidence            23578999999999975321  122223333321 111235799999999998653 122222333321    1122 58


Q ss_pred             EEEecCCCcChHHHHHHHHH
Q 014461          293 FMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~  312 (424)
                      ++|||++|.|+++++++|.+
T Consensus       154 ~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         154 QGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             EecccCCCCCHHHHHHHHhc
Confidence            99999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04135 Tc10 TC10 subfamily

Probab=99.80  E-value=1e-18  Score=154.64  Aligned_cols=158  Identities=15%  Similarity=0.156  Sum_probs=102.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|++|+|||||++++.+..+.  ....++........+..++  ..+.+|||||...+....            .
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~   66 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR------------P   66 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccc------------c
Confidence            47999999999999999999987764  2233333322222233333  346799999986542110            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~  284 (424)
                      ..+..+|++++|+|.++..+.  ..+ ..|+..+... .++.|+++|+||+|+.+...            ...+....+.
T Consensus        67 ~~~~~~~~~ilv~~~~~~~s~--~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  143 (174)
T cd04135          67 LSYPMTDVFLICFSVVNPASF--QNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA  143 (174)
T ss_pred             ccCCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence            235678999999999754222  112 1233333222 34689999999999865321            1122334455


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ...+...+++|||++|.|++++++.+.+.+
T Consensus       144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         144 KEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             HHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            555665699999999999999999998754

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00879 Sar1 Sar1 subfamily

Probab=99.80  E-value=1.7e-18  Score=155.63  Aligned_cols=158  Identities=16%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|++|||||||++++.+..+....+    |.......+..++..+.+|||||....            ....
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~------------~~~~   80 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQA------------RRLW   80 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHHH------------HHHH
Confidence            357899999999999999999999876532211    222223345566788999999996432            1112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC--------
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP--------  287 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--------  287 (424)
                      ...+..+|++++|+|+++..+  ......++..+.. ....+.|+++|+||+|+... ....+ .+.+....        
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s--~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~  156 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPER--FQESKEELDSLLSDEELANVPFLILGNKIDLPGA-VSEEE-LRQALGLYGTTTGKGV  156 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHH--HHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-cCHHH-HHHHhCcccccccccc
Confidence            234578899999999975311  1122233333322 22235899999999998652 12222 22222211        


Q ss_pred             -------CCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          288 -------GYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       288 -------~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                             ....+++|||++|+|+++++++|.+.+
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             cccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence                   112589999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04118 Rab24 Rab24 subfamily

Probab=99.80  E-value=1.4e-18  Score=156.60  Aligned_cols=160  Identities=21%  Similarity=0.234  Sum_probs=102.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE-EEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~-~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .||+++|.+|||||||++++++..+.. .....|..... ...+..++  ..+.+|||||...+..          ..  
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~--   67 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA----------MS--   67 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh----------hh--
Confidence            379999999999999999999877642 22333332221 12233334  3467999999754311          11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh----hhHHHHHHHHhcCCCCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~  292 (424)
                      ...+..+|++++|+|+++.  .....+..|+..+... .++.|+++|+||+|+....    .........+....+. ++
T Consensus        68 ~~~~~~~d~iilv~d~~~~--~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~  143 (193)
T cd04118          68 RIYYRGAKAAIVCYDLTDS--SSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QH  143 (193)
T ss_pred             HhhcCCCCEEEEEEECCCH--HHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eE
Confidence            1235678999999999753  2222334455554332 2358999999999986431    1111223444444444 48


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|+++++++|.+.+..
T Consensus       144 ~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         144 FETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987743

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04148 RGK RGK subfamily

Probab=99.80  E-value=1.1e-18  Score=160.87  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=102.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcce-eecCCCCc-eeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNT-TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~-~~~~~~~t-t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||++++.++.+. ........ ........+......+.+|||||....            ...  
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------------~~~--   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW------------TED--   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH------------HHh--
Confidence            47999999999999999999876653 11111111 111111122334567899999997511            111  


Q ss_pred             hhcc-cccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          218 SAVN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       218 ~~~~-~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ..+. .+|++++|+|+++..+  ...+.+++..+.... ..+.|+++|+||+|+........+....+....+. .++++
T Consensus        67 ~~~~~~ad~iilV~d~td~~S--~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~  143 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSS--FERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIET  143 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEe
Confidence            1123 7899999999976422  223334444332211 23589999999999976533333333445544454 49999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       144 SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         144 SAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             cCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999998875

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00157 Rho Rho (Ras homology) family

Probab=99.80  E-value=8.4e-19  Score=154.51  Aligned_cols=157  Identities=15%  Similarity=0.218  Sum_probs=101.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||+++|++..+.  .....+..........  .....+.+|||||...+..          ...  
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----------~~~--   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----------LRP--   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------cch--
Confidence            47999999999999999999987763  1122222222222222  2344689999999875421          000  


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh-----------HHHHHHHHhcC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-----------LLKVAEQFKHL  286 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~~~~  286 (424)
                      ..+..+|++++|+|+++..+. ......|+..+.... ++.|+++|+||+|+......           .......+...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~  144 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSF-ENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE  144 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence            124678999999999753221 122223343333222 25899999999999765322           12233445445


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHH
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      .+...++++||++|.|+++++++|.+
T Consensus       145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         145 IGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            55546999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.79  E-value=1.2e-18  Score=151.47  Aligned_cols=156  Identities=17%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +|+++|++|||||||++++++..+  ......++.+.....+...  ...+.+||+||.....         ...   ..
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~---~~   66 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS---------AMR---DL   66 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH---------HHH---HH
Confidence            589999999999999999998764  3444444444444444444  3568899999975421         111   12


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .+..+|++++|+|.++..  ....+..+...+..... ...|+++|+||+|+........+....+....+ .+++++||
T Consensus        67 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~  143 (160)
T cd00876          67 YIRQGDGFILVYSITDRE--SFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSA  143 (160)
T ss_pred             HHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEecc
Confidence            356789999999997532  22223333333222111 358999999999998643333333444444334 35999999


Q ss_pred             CCCcChHHHHHHHHHh
Q 014461          298 LKGAGLKALTQYLMEQ  313 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~  313 (424)
                      ++|.|+++++++|.+.
T Consensus       144 ~~~~~i~~l~~~l~~~  159 (160)
T cd00876         144 KDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN03108 Rab family protein; Provisional

Probab=99.79  E-value=1.4e-18  Score=158.89  Aligned_cols=161  Identities=17%  Similarity=0.161  Sum_probs=106.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|++|+|||||+++|++..+.... .+....+.....+...+  ..+.+|||||.....            ...
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~------------~~~   72 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------------SIT   72 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH------------HHH
Confidence            479999999999999999999987664322 12111111122233333  457899999975321            111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|+++..  ....+..|+..+.....+..|+++|+||+|+...+....+..+.+....+. +++++|
T Consensus        73 ~~~~~~ad~~vlv~D~~~~~--s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S  149 (210)
T PLN03108         73 RSYYRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEAS  149 (210)
T ss_pred             HHHhccCCEEEEEEECCcHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence            23456789999999997532  223344455444333334589999999999976433333444555555555 499999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.|++++|+++.+.+.
T Consensus       150 a~~~~~v~e~f~~l~~~~~  168 (210)
T PLN03108        150 AKTAQNVEEAFIKTAAKIY  168 (210)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987764

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.79  E-value=2.2e-18  Score=154.17  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=98.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE---ecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM---TKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+|+++|.+|||||||++++.+..+..  ..+..........+   ...+..+.+|||||...+.         ...  
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~--   69 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR---------PLW--   69 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeeccCCCceEEEEEECCCcHhHH---------HHH--
Confidence            5789999999999999999998876542  22221111111112   2245679999999974321         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCC--C
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPG--Y  289 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~--~  289 (424)
                       ...+..+|++++|+|+++..  .......++.++... ...+.|+++|+||+|+.... .... ...+..   ...  .
T Consensus        70 -~~~~~~~d~ii~v~D~~~~~--~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~-~~~~-~~~~~~~~~~~~~~~  144 (183)
T cd04152          70 -KSYTRCTDGIVFVVDSVDVE--RMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL-SVSE-VEKLLALHELSASTP  144 (183)
T ss_pred             -HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC-CHHH-HHHHhCccccCCCCc
Confidence             12367799999999997531  112223333332211 12258999999999986421 1111 222221   111  1


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..++++||++|.|+++++++|.+.+.
T Consensus       145 ~~~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         145 WHVQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             eEEEEeecccCCCHHHHHHHHHHHHH
Confidence            24789999999999999999988773

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.79  E-value=2.2e-18  Score=152.21  Aligned_cols=161  Identities=17%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+|+++|++|||||||++++++..+.... .+..........+..+  ...+.+|||||...+.         ..+  .
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~--~   69 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT-EATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---------KSM--V   69 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---------Hhh--H
Confidence            478999999999999999999886653211 1111111111223333  3578999999975321         001  1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ...++.+|++++|+|++++.  ....+..|+..+... ...+.|+++|+||+|+...........+.+...... +++++
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~  146 (170)
T cd04115          70 QHYYRNVHAVVFVYDVTNMA--SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFET  146 (170)
T ss_pred             HHhhcCCCEEEEEEECCCHH--HHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCC-cEEEE
Confidence            12357789999999997532  223344555444322 123589999999999976443333444555555444 49999


Q ss_pred             ecCC---CcChHHHHHHHHHhc
Q 014461          296 SGLK---GAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~---g~gi~~L~~~i~~~l  314 (424)
                      ||++   +.|++++|..+.+.+
T Consensus       147 Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         147 SAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             eccCCcCCCCHHHHHHHHHHHh
Confidence            9999   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.8e-18  Score=151.76  Aligned_cols=162  Identities=16%  Similarity=0.171  Sum_probs=121.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE--EEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE--VLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~--~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ...++|+++|.+|||||+++-++....+.   .....|...  .......+  ...+.+|||.|+..+.           
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~---~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~-----------   75 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFN---TSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR-----------   75 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhccCc---CCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH-----------
Confidence            45689999999999999999999877653   222222211  11112233  3457899999987542           


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                       ..+..+++.|+.+++|+|.++..  ....+..|++.+......+.|.++|+||+|+...++...+..+.++..++.. +
T Consensus        76 -ti~~sYyrgA~gi~LvyDitne~--Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F  151 (207)
T KOG0078|consen   76 -TITTAYYRGAMGILLVYDITNEK--SFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-F  151 (207)
T ss_pred             -HHHHHHHhhcCeeEEEEEccchH--HHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe-E
Confidence             22334578899999999998643  3345556777766666667999999999999987777778888888888886 9


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.||++.|-.|...+..
T Consensus       152 ~EtSAk~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  152 FETSAKTNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             EEccccCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999887753

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.79  E-value=1.5e-18  Score=151.44  Aligned_cols=152  Identities=13%  Similarity=0.110  Sum_probs=99.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|||||||+.+++...+...  .+. +.......+..++  ..+.+|||+|....                 
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----------------   60 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----------------   60 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCC--CCC-CccceEEEEEECCEEEEEEEEECCCCCch-----------------
Confidence            3799999999999999999887665422  111 1111112233444  45889999998421                 


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCC--ChhhHHHHHHHHhcCCCCCeEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .....+|++++|+|.++..+.  ..+..|+.++.... .++.|+++|+||+|+..  .+....+..+.+.+..+...+++
T Consensus        61 ~~~~~~~~~ilv~d~~~~~sf--~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e  138 (158)
T cd04103          61 QFASWVDAVIFVFSLENEASF--QTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE  138 (158)
T ss_pred             hHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE
Confidence            123567999999999864332  33344555543322 24579999999999853  22233334445554433335999


Q ss_pred             EecCCCcChHHHHHHHHHh
Q 014461          295 TSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~  313 (424)
                      |||++|.||+++|+.+.+.
T Consensus       139 ~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         139 TCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EecCCCCCHHHHHHHHHhh
Confidence            9999999999999998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.79  E-value=2.9e-18  Score=153.16  Aligned_cols=159  Identities=15%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|.+|||||||++++....+...  .|.....  ...+...+..+.+|||||.....         ..   .
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~--~pt~g~~--~~~~~~~~~~~~i~D~~Gq~~~~---------~~---~   78 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFN--VETVEYKNISFTVWDVGGQDKIR---------PL---W   78 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccc--cCCccee--EEEEEECCEEEEEEECCCCHHHH---------HH---H
Confidence            3457999999999999999999987655322  1211111  12244567789999999974321         11   1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC----Ce
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY----ER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~  291 (424)
                      ...+..+|++++|+|+++..  ....+..++..+.. ...++.|+++|+||+|+.... ...+..+.+. ....    ..
T Consensus        79 ~~~~~~a~~iI~V~D~s~~~--s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~l~-l~~~~~~~~~  154 (181)
T PLN00223         79 RHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG-LHSLRQRHWY  154 (181)
T ss_pred             HHHhccCCEEEEEEeCCcHH--HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-CHHHHHHHhC-ccccCCCceE
Confidence            22367889999999997532  22233334444321 122358999999999987642 2222222221 1111    13


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++++||++|+|+++++++|.+.+.
T Consensus       155 ~~~~Sa~~g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        155 IQSTCATSGEGLYEGLDWLSNNIA  178 (181)
T ss_pred             EEeccCCCCCCHHHHHHHHHHHHh
Confidence            568999999999999999988764

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.79  E-value=2.3e-18  Score=150.16  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=95.0

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|||||||++++.+..+....+..+.+.   ..........+.+|||||.....         .   .....+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~l~i~D~~G~~~~~---------~---~~~~~~   65 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV---EMLQLEKHLSLTVWDVGGQEKMR---------T---VWKCYL   65 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce---EEEEeCCceEEEEEECCCCHhHH---------H---HHHHHh
Confidence            48999999999999999999887643322222111   11112345679999999975321         1   111246


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHh-----cCCCCCeEEE
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-----HLPGYERIFM  294 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~  294 (424)
                      ..+|++++|+|+++..+  ...+..++.+... ....+.|+++|+||+|+.... ...+....+.     ...+ .++++
T Consensus        66 ~~~~~iv~v~D~~~~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~  141 (160)
T cd04156          66 ENTDGLVYVVDSSDEAR--LDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-TAEEITRRFKLKKYCSDRD-WYVQP  141 (160)
T ss_pred             ccCCEEEEEEECCcHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-CHHHHHHHcCCcccCCCCc-EEEEe
Confidence            67899999999975421  2223333333221 111358999999999996421 1122222221     1111 24899


Q ss_pred             EecCCCcChHHHHHHHHH
Q 014461          295 TSGLKGAGLKALTQYLME  312 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~  312 (424)
                      |||++|.|+++++++|.+
T Consensus       142 ~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         142 CSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cccccCCChHHHHHHHhc
Confidence            999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.79  E-value=3.7e-18  Score=149.04  Aligned_cols=144  Identities=18%  Similarity=0.296  Sum_probs=94.3

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|+|||||+|+|.|....  .   ..|..     ..+...  .+|||||.....     ..   .....+..+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~-----v~~~~~--~~iDtpG~~~~~-----~~---~~~~~~~~~   62 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQA-----VEFNDK--GDIDTPGEYFSH-----PR---WYHALITTL   62 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceE-----EEECCC--CcccCCccccCC-----HH---HHHHHHHHH
Confidence            6999999999999999999875421  1   11111     111121  269999985332     11   233334457


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC-CeEEEEecCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY-ERIFMTSGLK  299 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~iSA~~  299 (424)
                      ..+|++++|+|++...+...    .++..+.    .+.|+++++||+|+...  +..... .+....++ .+++++||++
T Consensus        63 ~~ad~il~v~d~~~~~s~~~----~~~~~~~----~~~~ii~v~nK~Dl~~~--~~~~~~-~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         63 QDVDMLIYVHGANDPESRLP----AGLLDIG----VSKRQIAVISKTDMPDA--DVAATR-KLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             hcCCEEEEEEeCCCcccccC----HHHHhcc----CCCCeEEEEEccccCcc--cHHHHH-HHHHHcCCCCCEEEEECCC
Confidence            78999999999986543322    2333322    24689999999998653  222222 33223343 4699999999


Q ss_pred             CcChHHHHHHHHHhcc
Q 014461          300 GAGLKALTQYLMEQAV  315 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~  315 (424)
                      |.|+++|+++|.+.+.
T Consensus       132 g~gi~~l~~~l~~~~~  147 (158)
T PRK15467        132 PQSVQQLVDYLASLTK  147 (158)
T ss_pred             ccCHHHHHHHHHHhch
Confidence            9999999999988774

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2e-18  Score=175.37  Aligned_cols=165  Identities=21%  Similarity=0.314  Sum_probs=124.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ..+|+++|+||||||||+|+|+|.+.. +++.||+|.+...+.+...+.++.++|.||...-.....    .+.+.+.+-
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~----DE~Var~~l   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSE----DEKVARDFL   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCc----hHHHHHHHH
Confidence            456999999999999999999998764 899999999999999999999999999999986543222    223333333


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .-..+|+++.|+|+++ +.......++ +.++      +.|+++++|++|..+.+ .+.-..+.+.+..+.+ ++++||+
T Consensus        78 l~~~~D~ivnVvDAtn-LeRnLyltlQ-LlE~------g~p~ilaLNm~D~A~~~-Gi~ID~~~L~~~LGvP-Vv~tvA~  147 (653)
T COG0370          78 LEGKPDLIVNVVDATN-LERNLYLTLQ-LLEL------GIPMILALNMIDEAKKR-GIRIDIEKLSKLLGVP-VVPTVAK  147 (653)
T ss_pred             hcCCCCEEEEEcccch-HHHHHHHHHH-HHHc------CCCeEEEeccHhhHHhc-CCcccHHHHHHHhCCC-EEEEEee
Confidence            3467899999999964 3332223333 3344      37899999999987653 2222234555566776 9999999


Q ss_pred             CCcChHHHHHHHHHhccCCC
Q 014461          299 KGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~~~~  318 (424)
                      +|.|++++++.+.+......
T Consensus       148 ~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         148 RGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             cCCCHHHHHHHHHHhccccc
Confidence            99999999999998776544

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.79  E-value=2.9e-18  Score=156.04  Aligned_cols=161  Identities=18%  Similarity=0.289  Sum_probs=98.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcce--eecCCCCceeeEEEEEEec---------------------------CC----
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTK---------------------------AD----  186 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~--~~~~~~~tt~~~~~~~~~~---------------------------~~----  186 (424)
                      .+|+++|+.|+|||||+.+|.+....  ......+.|.......+.+                           .+    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            36899999999999999999764210  0000001111100000000                           02    


Q ss_pred             --ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          187 --TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       187 --~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                        .++.||||||...            ....++..+..+|++++|+|++++. .......+..+...+     ..|+++|
T Consensus        81 ~~~~i~~iDtPG~~~------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiiv  143 (203)
T cd01888          81 LVRHVSFVDCPGHEI------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIV  143 (203)
T ss_pred             cccEEEEEECCChHH------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEE
Confidence              6799999999632            2445566677889999999998632 222233333343322     2468999


Q ss_pred             EecCCCCCChhhHHHH---HHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          264 MNKVDLVTKKKDLLKV---AEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       264 ~NK~Dl~~~~~~~~~~---~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      +||+|+... ......   .+.+....  ...+++++||++|.|+++|+++|.+.++++|
T Consensus       144 vNK~Dl~~~-~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~  202 (203)
T cd01888         144 QNKIDLVKE-EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP  202 (203)
T ss_pred             EEchhccCH-HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999763 222222   22222211  1235999999999999999999999887643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=155.89  Aligned_cols=175  Identities=24%  Similarity=0.319  Sum_probs=124.7

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      -....+.|+|.|+||||||||++++++.+.. +.++|.||.....|++..+..++.++||||+.+... .....+....-
T Consensus       164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl-~ErN~IE~qAi  241 (346)
T COG1084         164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPL-EERNEIERQAI  241 (346)
T ss_pred             CCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCCh-HHhcHHHHHHH
Confidence            3456789999999999999999999998764 899999999999999999999999999999975321 11111211122


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .++.  .-.++|+|++|.+.......+.-..++++.....  +.|+++|+||+|.... +...+....+... +......
T Consensus       242 ~AL~--hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~-~~~~~~~  315 (346)
T COG1084         242 LALR--HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE-EKLEEIEASVLEE-GGEEPLK  315 (346)
T ss_pred             HHHH--HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch-hHHHHHHHHHHhh-ccccccc
Confidence            2222  3468999999998766555544445555544332  3689999999999864 3444443333333 3333677


Q ss_pred             EecCCCcChHHHHHHHHHhccCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      +|+..+.+++.+.+.+...+...
T Consensus       316 ~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         316 ISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             eeeeehhhHHHHHHHHHHHhhch
Confidence            89999999999999888776443

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.78  E-value=5.5e-18  Score=151.49  Aligned_cols=159  Identities=17%  Similarity=0.094  Sum_probs=100.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..+|+++|.+|||||||++++..+.+...  .+ |+. .....+...+..+.+|||||.....         .   ...
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~-T~~-~~~~~~~~~~~~~~l~D~~G~~~~~---------~---~~~   79 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT--IP-TIG-FNVETVEYKNLKFTMWDVGGQDKLR---------P---LWR   79 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC-ccc-cceEEEEECCEEEEEEECCCCHhHH---------H---HHH
Confidence            458999999999999999999976555322  12 221 1122344567889999999975321         1   112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC--CCC-CeEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGY-ERIF  293 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~-~~~~  293 (424)
                      ..+..+|++|+|+|+++..+  ......++.... .....+.|+++|+||+|+.+.. ...+....+...  ... ..++
T Consensus        80 ~~~~~ad~iI~v~D~t~~~s--~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~l~~~~~~~~~~~~~  156 (182)
T PTZ00133         80 HYYQNTNGLIFVVDSNDRER--IGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-STTEVTEKLGLHSVRQRNWYIQ  156 (182)
T ss_pred             HHhcCCCEEEEEEeCCCHHH--HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-CHHHHHHHhCCCcccCCcEEEE
Confidence            34678999999999975321  222233333332 1112347899999999986531 122222322211  011 1367


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++||++|.|+++++++|.+.+.
T Consensus       157 ~~Sa~tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        157 GCCATTAQGLYEGLDWLSANIK  178 (182)
T ss_pred             eeeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999988663

>cd04151 Arl1 Arl1 subfamily

Probab=99.78  E-value=2e-18  Score=150.48  Aligned_cols=153  Identities=18%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|+|||||++++....+...  .+  |.......+...+..+.+|||||...+.         .   .....+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~---~~~~~~   64 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGQTSIR---------P---YWRCYY   64 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc--CC--ccCcCeEEEEECCEEEEEEECCCCHHHH---------H---HHHHHh
Confidence            589999999999999999977655321  11  1111112344567789999999975321         1   112345


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CCCeEEEEe
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMTS  296 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~iS  296 (424)
                      ..+|++++|+|+++..+.  .....++..+ ......+.|+++|+||+|+.+.. ...+....+....   ...++++||
T Consensus        65 ~~~~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~S  141 (158)
T cd04151          65 SNTDAIIYVVDSTDRDRL--GTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-SEAEISEKLGLSELKDRTWSIFKTS  141 (158)
T ss_pred             cCCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCccccCCCcEEEEEee
Confidence            779999999999753211  1111222211 11112357999999999997532 1222222222110   112599999


Q ss_pred             cCCCcChHHHHHHHHH
Q 014461          297 GLKGAGLKALTQYLME  312 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~  312 (424)
                      |++|.|+++++++|.+
T Consensus       142 a~~~~gi~~l~~~l~~  157 (158)
T cd04151         142 AIKGEGLDEGMDWLVN  157 (158)
T ss_pred             ccCCCCHHHHHHHHhc
Confidence            9999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=99.78  E-value=6.9e-19  Score=162.59  Aligned_cols=168  Identities=16%  Similarity=0.151  Sum_probs=124.3

Q ss_pred             ccCCCCCCCChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhH
Q 014461           14 AEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTW   76 (424)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~   76 (424)
                      -++|.-.-+..||=+||+++..+...  .++++|++||+||||||+++ |+                |+||+++...+..
T Consensus        17 ~~~~~~~~~~~wfpgHmakalr~i~~--~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~   94 (335)
T KOG2485|consen   17 VIFAKYNMPRRWFPGHMAKALRAIQN--RLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKI   94 (335)
T ss_pred             ccccccCCccccCchHHHHHHHHHHh--hcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHH
Confidence            34444444567888999999999998  88899999999999999999 55                5599998888899


Q ss_pred             HHHHHhcCCe-EEEeeccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCCh
Q 014461           77 DEKYRERTDR-IVFGEEAQKG---KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGK  152 (424)
Q Consensus        77 ~~~~~~~~~~-i~f~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GK  152 (424)
                      .+++..++.. .++.+++..-   ...+          ..+...+.+...        +.-.......+|+|+|.||+||
T Consensus        95 iq~~~~~~~~~~~~~~c~~~~~~~v~~l----------~~il~~~~~~l~--------r~irt~~~~~~vmVvGvPNVGK  156 (335)
T KOG2485|consen   95 IQYLEWQNLESYIKLDCNKDCNKQVSPL----------LKILTILSEELV--------RFIRTLNSEYNVMVVGVPNVGK  156 (335)
T ss_pred             HHHHHhhcccchhhhhhhhhhhhccccH----------HHHHHHHHHHHH--------HhhcccCCceeEEEEcCCCCCh
Confidence            9999877655 4555554333   3333          111111111111        1112345678999999999999


Q ss_pred             hHHHHhHhC-----CcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          153 SSIINYMVG-----TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       153 StLin~l~~-----~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      |||+|++..     .+.+.++..+|.|+.....+.......++++||||+..+.
T Consensus       157 SsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~  210 (335)
T KOG2485|consen  157 SSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS  210 (335)
T ss_pred             HHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence            999998863     3567789999999988766666778889999999998774

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.78  E-value=3e-18  Score=151.78  Aligned_cols=155  Identities=17%  Similarity=0.139  Sum_probs=101.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++++++|.+|+|||||++++.+..+.  .....|..+.....+..++  ..+.+|||||...+...          .  .
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~--~   66 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL----------R--P   66 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc----------c--c
Confidence            47999999999999999999876653  3344444333222233333  46789999998544211          0  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~~~~  284 (424)
                      ..+..+|++++|+|++++.+.  ..+ ..|+..+... .++.|+++|+||+|+....            ....+....+.
T Consensus        67 ~~~~~a~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a  143 (173)
T cd04130          67 LCYPDTDVFLLCFSVVNPSSF--QNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA  143 (173)
T ss_pred             cccCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence            245788999999999764322  222 2344433321 2358999999999986431            11223344555


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHH
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLM  311 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~  311 (424)
                      ...+...+++|||++|.|++++++.+.
T Consensus       144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         144 EKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            555665799999999999999999875

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.78  E-value=4.9e-18  Score=153.08  Aligned_cols=148  Identities=18%  Similarity=0.205  Sum_probs=102.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcc------e---------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKV------A---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~------~---------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~  203 (424)
                      ..+|+++|++|+|||||+++|++...      .         ......++|.+.....+..++.++.++||||+..    
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----   77 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence            36899999999999999999985310      0         0112346666665555667788999999999753    


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHH---HH
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL---KV  279 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~---~~  279 (424)
                              ....++..+..+|++++|+|+..+...........+...+      .| +|+|+||+|+........   +.
T Consensus        78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~------~~~iIvviNK~D~~~~~~~~~~~~~~  143 (195)
T cd01884          78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG------VPYIVVFLNKADMVDDEELLELVEME  143 (195)
T ss_pred             --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCcEEEEEeCCCCCCcHHHHHHHHHH
Confidence                    2444556678899999999998776666656666666543      45 779999999975322122   22


Q ss_pred             HHHHhcCCCC----CeEEEEecCCCcChH
Q 014461          280 AEQFKHLPGY----ERIFMTSGLKGAGLK  304 (424)
Q Consensus       280 ~~~~~~~~~~----~~~~~iSA~~g~gi~  304 (424)
                      +..+....++    .+++++||++|.|+.
T Consensus       144 i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         144 VRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             HHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            2233222232    469999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.78  E-value=4.3e-18  Score=150.82  Aligned_cols=158  Identities=13%  Similarity=0.124  Sum_probs=100.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|++|||||||++++.+..+..  ....+........+..+  ...+.+|||||.......          .  .
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~--~   67 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----------R--P   67 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhc----------c--c
Confidence            579999999999999999999876642  22222222222223333  346789999997543210          0  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhhH------------HHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~------------~~~~~~~~  284 (424)
                      ..+..+|++++|+|+++..  ....+. .|+..+... .++.|+++|+||+|+.......            ....+.+.
T Consensus        68 ~~~~~~d~~i~v~~~~~~~--s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~  144 (175)
T cd01870          68 LSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA  144 (175)
T ss_pred             cccCCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence            2357789999999997532  112221 233333221 2358999999999986532111            11223333


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ...+...+++|||++|.|+++++++|.+.+
T Consensus       145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         145 NKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            334444699999999999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.78  E-value=6.3e-18  Score=147.13  Aligned_cols=153  Identities=14%  Similarity=0.113  Sum_probs=98.8

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      ||+++|.+|||||||++++++..........+.+.    ..+...+..+.+|||||.....         ...   ...+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~---------~~~---~~~~   64 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQDKIR---------PLW---KHYY   64 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCChhhH---------HHH---HHHh
Confidence            58999999999999999999887432222222222    2244567789999999975431         111   1245


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCeEEEEe
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERIFMTS  296 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~iS  296 (424)
                      ..+|++++|+|++++.  .......++..+.. ....+.|+++|+||+|+.... ...+..+.+...   ....+++++|
T Consensus        65 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S  141 (158)
T cd00878          65 ENTNGIIFVVDSSDRE--RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCS  141 (158)
T ss_pred             ccCCEEEEEEECCCHH--HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEee
Confidence            6789999999997532  12223333333222 112358999999999997642 222222332211   1233699999


Q ss_pred             cCCCcChHHHHHHHHH
Q 014461          297 GLKGAGLKALTQYLME  312 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~  312 (424)
                      |++|.|+++++++|..
T Consensus       142 a~~~~gv~~~~~~l~~  157 (158)
T cd00878         142 AVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCCHHHHHHHHhh
Confidence            9999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.78  E-value=4e-18  Score=153.96  Aligned_cols=147  Identities=17%  Similarity=0.215  Sum_probs=91.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhC--Ccceee-------------cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG--TKVAAV-------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY  204 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~--~~~~~~-------------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~  204 (424)
                      .+|+++|.+|+|||||+++|++  ..+...             ....++|.......+...+..+.+|||||+..+.   
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~---   79 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG---   79 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence            5799999999999999999986  222111             0113344444444456677889999999986431   


Q ss_pred             ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-h-HHHHHHH
Q 014461          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-D-LLKVAEQ  282 (424)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~  282 (424)
                            .   .....+..+|++++|+|++++.......+...+..      .+.|+++|+||+|+..... . ..+..+.
T Consensus        80 ------~---~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  144 (194)
T cd01891          80 ------G---EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE------LGLKPIVVINKIDRPDARPEEVVDEVFDL  144 (194)
T ss_pred             ------H---HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH------cCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence                  1   12234577899999999976533222222222222      1478999999999975322 1 2222222


Q ss_pred             Hhc------CCCCCeEEEEecCCCcChHH
Q 014461          283 FKH------LPGYERIFMTSGLKGAGLKA  305 (424)
Q Consensus       283 ~~~------~~~~~~~~~iSA~~g~gi~~  305 (424)
                      +..      ..+. +++++||++|.|+.+
T Consensus       145 ~~~~~~~~~~~~~-~iv~~Sa~~g~~~~~  172 (194)
T cd01891         145 FIELGATEEQLDF-PVLYASAKNGWASLN  172 (194)
T ss_pred             HHHhCCccccCcc-CEEEeehhccccccc
Confidence            211      1233 589999999987644

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.78  E-value=7.8e-18  Score=156.19  Aligned_cols=160  Identities=20%  Similarity=0.304  Sum_probs=112.5

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.||+|||||+|+|.+... .+++.+++|.....+.+...+.++.+|||||+.......     .......+..+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~-----~~~~~~~l~~~   75 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG-----KGRGRQVIAVA   75 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccc-----hhHHHHHHHhh
Confidence            689999999999999999998764 367788888888788787888999999999986542111     12233345567


Q ss_pred             ccccEEEEEEeCCCCCCC-------------------------------------------chHHHHHHHHHhccCC---
Q 014461          221 NLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQA---  254 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~-------------------------------------------~~~~~~~~l~~~~~~~---  254 (424)
                      +.+|++++|+|+++....                                           ....+...|++++...   
T Consensus        76 ~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v  155 (233)
T cd01896          76 RTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV  155 (233)
T ss_pred             ccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence            889999999998643210                                           0122333333332111   


Q ss_pred             ------------------CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          255 ------------------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       255 ------------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                                        ....|+++|+||+|+... ....    .+...   ..++++||++|.|++++++.|.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-~~~~----~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-EELD----LLARQ---PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-HHHH----HHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                              123689999999999763 2222    23332   2489999999999999999998866

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.9e-18  Score=146.52  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=121.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEE--EEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL--GVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~--~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+|+.++|..|||||+|+.+++...+..+.+   .|...-.  ..+..+  ..++.+|||.|+..+.            .
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr------------s   70 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR------------S   70 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHHHH------------H
Confidence            5789999999999999999999888764443   2221111  113333  4458899999986431            1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      -+.++++.+-.+|+|+|.++.  +....+..||.+......++.-+++++||+||...++...+..+.|++..++. +++
T Consensus        71 v~~syYr~a~GalLVydit~r--~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmE  147 (216)
T KOG0098|consen   71 VTRSYYRGAAGALLVYDITRR--ESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FME  147 (216)
T ss_pred             HHHHHhccCcceEEEEEccch--hhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eeh
Confidence            223457888999999999763  34456778888777665667889999999999988777788889999998887 889


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++++|+++.|......+.
T Consensus       148 TSakt~~~VEEaF~nta~~Iy  168 (216)
T KOG0098|consen  148 TSAKTAENVEEAFINTAKEIY  168 (216)
T ss_pred             hhhhhhhhHHHHHHHHHHHHH
Confidence            999999999999988776653

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.77  E-value=3.7e-18  Score=154.45  Aligned_cols=180  Identities=13%  Similarity=0.130  Sum_probs=119.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhh-hhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~-~~~~~~~~  217 (424)
                      .+|+++|.+|+|||||+|+|+|.+....+. .+++|+..........+.++.++||||+.+....  .... ....+..+
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~--~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVS--PEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCC--hHHHHHHHHHHHH
Confidence            369999999999999999999987654443 3466766666656678889999999999865321  1222 23333344


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh----------hhHHHHHHHHhcCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHLP  287 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~~  287 (424)
                      ......|++++|+|+.+ ++..+..+.+.+.+...... -.++++|+|+.|.....          ..+....+.+...+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~-~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKV-LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHh-HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            44577899999999976 67767777777776532211 14689999999976532          12222222222111


Q ss_pred             -CCCeEEEEecCCCcChHHHHHHHHHhccC-CCCCCCCC
Q 014461          288 -GYERIFMTSGLKGAGLKALTQYLMEQAVQ-RPWSEDPL  324 (424)
Q Consensus       288 -~~~~~~~iSA~~g~gi~~L~~~i~~~l~~-~~~~~~~~  324 (424)
                       .+....+ |+..+.++++|++.|.+.+++ ++|.|...
T Consensus       157 ~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~  194 (196)
T cd01852         157 VAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTND  194 (196)
T ss_pred             EEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence             1112223 466788999999999999987 66666543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.77  E-value=5.9e-18  Score=155.43  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=104.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||++++.+..+..  .+..|........+..+  ...+.+|||+|...+..          +.  -
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~----------l~--~   67 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN----------VR--P   67 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH----------Hh--H
Confidence            689999999999999999999877642  22223222222222333  34578999999754311          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK  284 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~  284 (424)
                      ..+..+|++++|+|.++..+  ...+ ..|...... ..++.|+++|+||+|+.....            ...+..+.+.
T Consensus        68 ~~~~~~d~illvfdis~~~S--f~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a  144 (222)
T cd04173          68 LAYPDSDAVLICFDISRPET--LDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA  144 (222)
T ss_pred             HhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence            24678999999999976422  2223 234333322 224689999999999965311            1223455666


Q ss_pred             cCCCCCeEEEEecCCCcC-hHHHHHHHHHhcc
Q 014461          285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQAV  315 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~  315 (424)
                      +..+...+++|||+++.| |+++|+.......
T Consensus       145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~  176 (222)
T cd04173         145 KQVGAVSYVECSSRSSERSVRDVFHVATVASL  176 (222)
T ss_pred             HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence            667765799999999985 9999999887543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.77  E-value=2.6e-18  Score=164.38  Aligned_cols=159  Identities=25%  Similarity=0.359  Sum_probs=119.7

Q ss_pred             ChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcCC
Q 014461           23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERTD   85 (424)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~~   85 (424)
                      ..||-+||.++..|...  .+..+|+++++.|+|.|..+ ++                |+||++....+.|..++...+.
T Consensus         4 ~~wfpgHm~k~~~~l~~--~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~   81 (287)
T PRK09563          4 IQWFPGHMAKARREIKE--NLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGI   81 (287)
T ss_pred             CcCcHHHHHHHHHHHHH--HhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence            46899999999999988  88899999999999999877 44                5599877667789999977676


Q ss_pred             eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461           86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (424)
Q Consensus        86 ~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~  164 (424)
                      .+++.++ ++.|..++          ......++.....+     ...+.......+++++|.||||||||+|+|.+.+.
T Consensus        82 ~vi~vSa~~~~gi~~L----------~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~  146 (287)
T PRK09563         82 KALAINAKKGQGVKKI----------LKAAKKLLKEKNER-----RKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI  146 (287)
T ss_pred             eEEEEECCCcccHHHH----------HHHHHHHHHHHHhh-----hhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence            7788888 77777766          22222222211110     01112234568999999999999999999999998


Q ss_pred             eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       165 ~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      +.+++.+++|+.....  . -+.++.++||||+..+.
T Consensus       147 ~~~~~~~g~T~~~~~~--~-~~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        147 AKTGNRPGVTKAQQWI--K-LGKGLELLDTPGILWPK  180 (287)
T ss_pred             cccCCCCCeEEEEEEE--E-eCCcEEEEECCCcCCCC
Confidence            8899999999987542  2 24568999999997653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.77  E-value=1.5e-17  Score=143.32  Aligned_cols=154  Identities=22%  Similarity=0.243  Sum_probs=97.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ++|+++|.+|+|||||+|++.+.. ......+.++.......+..++  ..+.+|||||......     ....      
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~------   69 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA-----IRRL------   69 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH-----HHHH------
Confidence            689999999999999999999887 4455666666666655555666  6789999999654311     1111      


Q ss_pred             hhcccccEEEEEEeCCCCCCCc---hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSP---DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~---~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ....++.++.++|........   .......+.....   .+.|+++|+||+|+....  ............+..++++
T Consensus        70 -~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~  143 (161)
T TIGR00231        70 -YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIP  143 (161)
T ss_pred             -HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEE
Confidence             122345555555543221111   1122222322221   157899999999997642  2222222233334445999


Q ss_pred             EecCCCcChHHHHHHHH
Q 014461          295 TSGLKGAGLKALTQYLM  311 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~  311 (424)
                      +||++|.|+++++++|.
T Consensus       144 ~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       144 LSAETGKNIDSAFKIVE  160 (161)
T ss_pred             eecCCCCCHHHHHHHhh
Confidence            99999999999999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=2.9e-18  Score=158.44  Aligned_cols=167  Identities=25%  Similarity=0.309  Sum_probs=118.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCcc-EEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ-ICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~-i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ....|++||.||+|||||+|+|...+- .+.+++.||..+..+.+.+++.. +.+-|.||+.+..+.-     +.+-...
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n-----kGlG~~F  268 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN-----KGLGYKF  268 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccccccc-----CcccHHH
Confidence            345689999999999999999998776 58999999999988887776654 9999999998754311     1112233


Q ss_pred             HhhcccccEEEEEEeCCCCCC-CchHHHHHHHHHhcc--CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLT-SPDSRVIRLIERMGK--QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~-~~~~~~~~~l~~~~~--~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      +..+..|+.++||+|.+.... .+...+..+..++..  ....+.|.++|+||+|+.+..+..   ++++.+......++
T Consensus       269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~  345 (366)
T KOG1489|consen  269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVV  345 (366)
T ss_pred             HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEE
Confidence            456677899999999986422 222333333333221  222357899999999997543332   34444444444699


Q ss_pred             EEecCCCcChHHHHHHHHHh
Q 014461          294 MTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ++||++|+|+.+|++.|.+.
T Consensus       346 pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  346 PVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             EeeeccccchHHHHHHHhhc
Confidence            99999999999999988654

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.77  E-value=1.7e-18  Score=167.49  Aligned_cols=159  Identities=26%  Similarity=0.410  Sum_probs=120.8

Q ss_pred             ChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcC-
Q 014461           23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERT-   84 (424)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~-   84 (424)
                      .+++-+|+.++..+...  .+..+|+|+++.|||+|.++ ++                |.||+++...++|..++.+.. 
T Consensus        14 i~~~~g~~~k~~~~~~~--~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~   91 (322)
T COG1161          14 IQWFPGHMKKAKRQLKE--VLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG   91 (322)
T ss_pred             ccCCCCchHHHHHHHHH--hcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence            35567788888888877  88889999999999999999 66                449999999999999999985 


Q ss_pred             CeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCc
Q 014461           85 DRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus        85 ~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ...++.++ ++.+...+          ......+....++...     .+.......+++++|.||||||||||+|++..
T Consensus        92 ~~~~~v~~~~~~~~~~i----------~~~~~~~~~~~i~~~~-----~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~  156 (322)
T COG1161          92 IKPIFVSAKSRQGGKKI----------RKALEKLSEEKIKRLK-----KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK  156 (322)
T ss_pred             CccEEEEeecccCccch----------HHHHHHHHHHHHHHHh-----hcCCCccceEEEEEcCCCCcHHHHHHHHhccc
Confidence            44577777 66666666          2222222222221111     11223456889999999999999999999999


Q ss_pred             ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          164 VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       164 ~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      .+.+++.||+|........   +..+.++||||+..+.
T Consensus       157 ~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~  191 (322)
T COG1161         157 VAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPK  191 (322)
T ss_pred             ceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCC
Confidence            9999999999998765433   3348999999998764

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.77  E-value=8.2e-18  Score=149.82  Aligned_cols=161  Identities=16%  Similarity=0.157  Sum_probs=100.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+|+++|.+|||||||++++.+..+.  .....++...........  +..+.+|||||.....         . .  ..
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~-~--~~   67 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS---------I-L--PQ   67 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH---------H-H--HH
Confidence            57999999999999999999987653  222233322222223333  3457899999975421         0 1  11


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|.++..  ....+..+...+.. ....+.|+++|+||+|+...+.........+....+. +++++|
T Consensus        68 ~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  144 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRK--SFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESS  144 (180)
T ss_pred             HHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC-eEEEEe
Confidence            2345689999999997532  22222222222211 1123478999999999875322222223333333343 589999


Q ss_pred             cCCCcChHHHHHHHHHhccCC
Q 014461          297 GLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~  317 (424)
                      |++|.|+++++++|.+.+...
T Consensus       145 a~~~~gv~~l~~~l~~~~~~~  165 (180)
T cd04137         145 ARENENVEEAFELLIEEIEKV  165 (180)
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999877543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.77  E-value=9e-18  Score=147.97  Aligned_cols=153  Identities=17%  Similarity=0.138  Sum_probs=98.8

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|||||||++++.+.......+..+.+    ...+...+..+.+|||||....         ...   ....+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~---------~~~---~~~~~   64 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGANF---------RGI---WVNYY   64 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHHH---------HHH---HHHHH
Confidence            3789999999999999999976322222222222    2234456788999999996432         111   22456


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHH-----HHhcCCCC-CeEE
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAE-----QFKHLPGY-ERIF  293 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~-~~~~  293 (424)
                      ..+|++++|+|+++..  .......++..+... ...+.|+++|+||+|+..... ..+..+     .+.+..+. ..++
T Consensus        65 ~~a~~ii~V~D~s~~~--s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~~~~~~~  141 (167)
T cd04161          65 AEAHGLVFVVDSSDDD--RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL-GADVIEYLSLEKLVNENKSLCHIE  141 (167)
T ss_pred             cCCCEEEEEEECCchh--HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC-HHHHHHhcCcccccCCCCceEEEE
Confidence            7899999999997632  233344455544322 223589999999999976431 112222     22212222 2578


Q ss_pred             EEecCCC------cChHHHHHHHHH
Q 014461          294 MTSGLKG------AGLKALTQYLME  312 (424)
Q Consensus       294 ~iSA~~g------~gi~~L~~~i~~  312 (424)
                      +|||++|      .|+++.++||.+
T Consensus       142 ~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         142 PCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EeEceeCCCCccccCHHHHHHHHhc
Confidence            8999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04155 Arl3 Arl3 subfamily

Probab=99.77  E-value=9.9e-18  Score=148.16  Aligned_cols=157  Identities=15%  Similarity=0.161  Sum_probs=99.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|++|||||||++++.+..+.......+.+.    ..+...+..+.+|||||....         ....   
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~---------~~~~---   75 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAI---------RPYW---   75 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHH---------HHHH---
Confidence            457899999999999999999999876543333222221    223455788999999997432         1111   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~  292 (424)
                      ...+..+|++++|+|+++..  .......++.... .....+.|+++++||+|+.... ......+.+.-..   ....+
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~i~~~l~~~~~~~~~~~~  152 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKK--RLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-PAEEIAEALNLHDLRDRTWHI  152 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-CHHHHHHHcCCcccCCCeEEE
Confidence            12357789999999997521  1112222222221 1112248999999999987542 2233333332110   11147


Q ss_pred             EEEecCCCcChHHHHHHHHH
Q 014461          293 FMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~  312 (424)
                      +++||++|+|+++++++|.+
T Consensus       153 ~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         153 QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEeECCCCCCHHHHHHHHhc
Confidence            89999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.77  E-value=4.7e-18  Score=148.52  Aligned_cols=157  Identities=20%  Similarity=0.277  Sum_probs=108.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ||+++|.+|||||||++++.+..+..  ....|. .+.....+..++  ..+.+||++|...+.      .    ..  .
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~----~~--~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD------S----LR--D   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH------H----HH--H
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccc--cccccccccccccccccccccccccccccccccccc------c----cc--c
Confidence            68999999999999999999876542  222222 233333333333  458999999975331      1    11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|.++.  .....+..|+..+......+.|+++|+||.|+...+....+..+.+....+ ..++++||
T Consensus        67 ~~~~~~~~~ii~fd~~~~--~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa  143 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDE--ESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA  143 (162)
T ss_dssp             HHHTTESEEEEEEETTBH--HHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred             cccccccccccccccccc--ccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence            236778999999999753  233345566666554444458999999999998643333445566666666 56999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.|+.++|..+.+.+
T Consensus       144 ~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  144 KNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTTTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999998865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.76  E-value=3.6e-18  Score=162.51  Aligned_cols=158  Identities=25%  Similarity=0.357  Sum_probs=118.2

Q ss_pred             hhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcCCe
Q 014461           24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERTDR   86 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~~~   86 (424)
                      .||-+||.++..|...  .+..+|+++++.|+|.|..+ ++                |+||++++....|..++...+..
T Consensus         2 ~WfpgHm~k~~~~~~~--~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~   79 (276)
T TIGR03596         2 QWFPGHMAKARREIKE--KLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIK   79 (276)
T ss_pred             ccChHHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCe
Confidence            5889999999999988  88889999999999999887 43                66998776678899988776767


Q ss_pred             EEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcce
Q 014461           87 IVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA  165 (424)
Q Consensus        87 i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~  165 (424)
                      +++.++ ++.|..++          .......+.....     ....+.......+++++|.||||||||+|+|.+.+..
T Consensus        80 vi~iSa~~~~gi~~L----------~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~  144 (276)
T TIGR03596        80 ALAINAKKGKGVKKI----------IKAAKKLLKEKNE-----KLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVA  144 (276)
T ss_pred             EEEEECCCcccHHHH----------HHHHHHHHHHhhh-----hhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            888888 77777766          1111222211110     0001112345689999999999999999999999888


Q ss_pred             eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          166 AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       166 ~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      .++..+++|+......+   +..+.++||||+..+.
T Consensus       145 ~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~  177 (276)
T TIGR03596       145 KVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPK  177 (276)
T ss_pred             ccCCCCCeecceEEEEe---CCCEEEEECCCcccCC
Confidence            89999999988754322   3468999999997653

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.76  E-value=7.9e-18  Score=151.97  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=100.7

Q ss_pred             ceEEEEEecCCCChhHHHH-hHhCCccee---ecCCCCcee--eEEE-E---------EEecCCccEEEEeCCCcccCCC
Q 014461          139 SVAVGIIGAPNAGKSSIIN-YMVGTKVAA---VSRKTNTTT--HEVL-G---------VMTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin-~l~~~~~~~---~~~~~~tt~--~~~~-~---------~~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      .++|+++|.+|||||||+. ++.+..+..   ......|..  +... .         .+......+.+|||+|....  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            3689999999999999996 555443210   112222221  1110 0         12223456899999997531  


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCC---------
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTK---------  272 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~---------  272 (424)
                                +.  ...+..+|++++|+|.++..+.  ..+. .|+..+.... ++.|+++|+||+|+...         
T Consensus        80 ----------~~--~~~~~~ad~iilv~d~t~~~Sf--~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~  144 (195)
T cd01873          80 ----------DR--RFAYGRSDVVLLCFSIASPNSL--RNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRAR  144 (195)
T ss_pred             ----------hh--cccCCCCCEEEEEEECCChhHH--HHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcc
Confidence                      11  1246789999999999764332  2232 2444443222 35799999999998641         


Q ss_pred             ----------hhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          273 ----------KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       273 ----------~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                                +....+..+.+++..+. .+++|||++|.||+++|+.+.+.
T Consensus       145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         145 RPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence                      22334456667776676 59999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.76  E-value=7.4e-18  Score=148.07  Aligned_cols=151  Identities=16%  Similarity=0.126  Sum_probs=97.9

Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (424)
                      |+++|.+|||||||++++.+..+.  .....|.... ...+...+..+.+|||||...+.         .   .....++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~~~~~---------~---~~~~~~~   66 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTGFN-SVAIPTQDAIMELLEIGGSQNLR---------K---YWKRYLS   66 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCc--ccccccCCcc-eEEEeeCCeEEEEEECCCCcchh---------H---HHHHHHh
Confidence            789999999999999999987543  2222221111 12244567789999999975431         1   1113467


Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH-----HHHHhcCCCCCeEEEEe
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-----AEQFKHLPGYERIFMTS  296 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~~iS  296 (424)
                      .+|++++|+|+++..  .......++.++.... ++.|+++|+||+|+..... ....     ...+....+. .++++|
T Consensus        67 ~ad~ii~V~D~t~~~--s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~S  141 (164)
T cd04162          67 GSQGLIFVVDSADSE--RLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARGRRW-ILQGTS  141 (164)
T ss_pred             hCCEEEEEEECCCHH--HHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCCCce-EEEEee
Confidence            889999999997643  1223344555543222 4689999999999876432 1111     2333333333 478888


Q ss_pred             cCC------CcChHHHHHHHHH
Q 014461          297 GLK------GAGLKALTQYLME  312 (424)
Q Consensus       297 A~~------g~gi~~L~~~i~~  312 (424)
                      |++      |+||+++|+.+..
T Consensus       142 a~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         142 LDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ecCCCChhHHHHHHHHHHHHhc
Confidence            888      9999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.76  E-value=7.4e-18  Score=143.79  Aligned_cols=167  Identities=18%  Similarity=0.159  Sum_probs=115.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|.++|.+|||||||+|++...++..-... .+....+....+...-..+.+|||.|+..+....           
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg-----------   75 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG-----------   75 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc-----------
Confidence            3468999999999999999999998776421111 0100111111123333457899999998764211           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHH----HHHhccCCCCCCcEEEEEecCCCCCC--hhhHHHHHHHHhcCCCC
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL----IERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGY  289 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~----l~~~~~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~  289 (424)
                       ...++.+|++++|+|+...-+  ...+..|    +.......+..-|+|+++||+|+...  +....+.++.|+...+.
T Consensus        76 -~aFYRgaDcCvlvydv~~~~S--fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn  152 (210)
T KOG0394|consen   76 -VAFYRGADCCVLVYDVNNPKS--FENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN  152 (210)
T ss_pred             -cceecCCceEEEEeecCChhh--hccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence             234788999999999965322  2233333    33333333345799999999999763  45667778888888888


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      .++|++|||.+.||++.|+.+...+...
T Consensus       153 ipyfEtSAK~~~NV~~AFe~ia~~aL~~  180 (210)
T KOG0394|consen  153 IPYFETSAKEATNVDEAFEEIARRALAN  180 (210)
T ss_pred             ceeEEecccccccHHHHHHHHHHHHHhc
Confidence            7899999999999999999999877543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.76  E-value=5.7e-18  Score=140.95  Aligned_cols=166  Identities=15%  Similarity=0.154  Sum_probs=115.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..++|+++|.+|||||||+-++....+....+. .+.........+.....++.+|||.|+..++...            
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT------------   77 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT------------   77 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC------------
Confidence            468999999999999999999998776432221 1111111121233445568999999998764322            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      -++++.|..+|+|+|++.+.  ....+..|++++.... .+++-.++|+||+|....+....+....|+..++.. ++++
T Consensus        78 pSyyRgaqGiIlVYDVT~Rd--tf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~  154 (209)
T KOG0080|consen   78 PSYYRGAQGIILVYDVTSRD--TFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIEC  154 (209)
T ss_pred             HhHhccCceeEEEEEccchh--hHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEc
Confidence            14568889999999997643  2334456666655432 234556899999998765555555556676666665 8999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ||++.+|++..|+.+.+.+.+.|
T Consensus       155 SAkt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  155 SAKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             chhhhccHHHHHHHHHHHHhcCc
Confidence            99999999999999999887655

>cd00880 Era_like Era (E

Probab=99.76  E-value=3.1e-17  Score=141.42  Aligned_cols=158  Identities=27%  Similarity=0.330  Sum_probs=107.3

Q ss_pred             EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccc
Q 014461          144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL  222 (424)
Q Consensus       144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (424)
                      ++|++|+|||||+|+|.+......+...++|........... +..+.+|||||+........     .........+..
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~-----~~~~~~~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR-----EREELARRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh-----hHHHHHHHHHHh
Confidence            589999999999999998877656677777766655554444 67899999999876532111     111233345677


Q ss_pred             ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH---HHHhcCCCCCeEEEEecCC
Q 014461          223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA---EQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~iSA~~  299 (424)
                      +|++++|+|++.........   ++.....   .+.|+++|+||+|+..... .....   ..........+++++||++
T Consensus        76 ~d~il~v~~~~~~~~~~~~~---~~~~~~~---~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~  148 (163)
T cd00880          76 ADLILFVVDADLRADEEEEK---LLELLRE---RGKPVLLVLNKIDLLPEEE-EEELLELRLLILLLLLGLPVIAVSALT  148 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHH---HHHHHHh---cCCeEEEEEEccccCChhh-HHHHHHHHHhhcccccCCceEEEeeec
Confidence            89999999998654433332   2222211   2478999999999987532 22221   1222233445699999999


Q ss_pred             CcChHHHHHHHHHh
Q 014461          300 GAGLKALTQYLMEQ  313 (424)
Q Consensus       300 g~gi~~L~~~i~~~  313 (424)
                      |.|+++++++|.+.
T Consensus       149 ~~~v~~l~~~l~~~  162 (163)
T cd00880         149 GEGIDELREALIEA  162 (163)
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.76  E-value=8.1e-18  Score=152.34  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             EecCCCChhHHHHhHhCCcceeecCCCCce---eeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461          145 IGAPNAGKSSIINYMVGTKVAAVSRKTNTT---THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (424)
Q Consensus       145 vG~~~~GKStLin~l~~~~~~~~~~~~~tt---~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (424)
                      +|.+|||||||+++++...+..  ....|.   .......+......+.+|||||...+..          +  ....++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~--~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~----------l--~~~~~~   66 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG----------L--RDGYYI   66 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh----------h--hHHHhc
Confidence            5999999999999999766532  222221   1111111222345789999999864321          1  113467


Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCc
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGA  301 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~  301 (424)
                      .+|++++|+|+++..  ....+..|+.++.... ++.|+++|+||+|+... ....+.. .+....++ .+++|||++|.
T Consensus        67 ~ad~~ilV~D~t~~~--S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~-~~~e~SAk~~~  140 (200)
T smart00176       67 QGQCAIIMFDVTARV--TYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKSI-TFHRKKNL-QYYDISAKSNY  140 (200)
T ss_pred             CCCEEEEEEECCChH--HHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHHH-HHHHHcCC-EEEEEeCCCCC
Confidence            889999999998643  2233445555544322 35899999999998643 2112222 34334444 49999999999


Q ss_pred             ChHHHHHHHHHhccC
Q 014461          302 GLKALTQYLMEQAVQ  316 (424)
Q Consensus       302 gi~~L~~~i~~~l~~  316 (424)
                      ||+++|++|.+.+..
T Consensus       141 ~v~~~F~~l~~~i~~  155 (200)
T smart00176      141 NFEKPFLWLARKLIG  155 (200)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04129 Rho2 Rho2 subfamily

Probab=99.75  E-value=1.7e-17  Score=148.91  Aligned_cols=159  Identities=17%  Similarity=0.172  Sum_probs=102.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+++++|++|+|||||++++....+..  ....+........+...+  ..+.+|||||...+....         .   
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~---------~---   67 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLR---------P---   67 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccc---------h---
Confidence            479999999999999999998655532  222222222222223333  357899999976432110         0   


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh----------hhHHHHHHHHhcC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHL  286 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~  286 (424)
                      ..+..+|++++|+|.++..  ....+. .|+..+... .++.|+++|+||+|+....          ....+....+.+.
T Consensus        68 ~~~~~a~~~llv~~i~~~~--s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (187)
T cd04129          68 LSYSKAHVILIGFAVDTPD--SLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE  144 (187)
T ss_pred             hhcCCCCEEEEEEECCCHH--HHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence            1346789999999996532  222232 344444322 2358999999999985421          1112234455555


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+...+|+|||++|.|++++|+++.+.+.
T Consensus       145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~  173 (187)
T cd04129         145 IGAKKYMECSALTGEGVDDVFEAATRAAL  173 (187)
T ss_pred             hCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence            66657999999999999999999997764

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.75  E-value=1.6e-17  Score=173.03  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=110.1

Q ss_pred             ecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccE
Q 014461          146 GAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV  225 (424)
Q Consensus       146 G~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~  225 (424)
                      |.||||||||+|++++... .+++.+++|.+...+.+..++.++.+|||||+........    .+.+.+.+.....+|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~----~e~v~~~~l~~~~aDv   75 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL----EEEVARDYLLNEKPDL   75 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch----HHHHHHHHHhhcCCCE
Confidence            8999999999999999875 5889999999888777777888899999999976532111    1122222223457899


Q ss_pred             EEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHH
Q 014461          226 LMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (424)
Q Consensus       226 vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~  305 (424)
                      +++|+|+++. .. .   ..+..+...   .+.|+++|+||+|+.+... .....+.+.+..+.+ ++++||++|.|+++
T Consensus        76 vI~VvDat~l-er-~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~-i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~e  145 (591)
T TIGR00437        76 VVNVVDASNL-ER-N---LYLTLQLLE---LGIPMILALNLVDEAEKKG-IRIDEEKLEERLGVP-VVPTSATEGRGIER  145 (591)
T ss_pred             EEEEecCCcc-hh-h---HHHHHHHHh---cCCCEEEEEehhHHHHhCC-ChhhHHHHHHHcCCC-EEEEECCCCCCHHH
Confidence            9999999752 21 1   122222211   1479999999999865322 222345556556654 99999999999999


Q ss_pred             HHHHHHHhc
Q 014461          306 LTQYLMEQA  314 (424)
Q Consensus       306 L~~~i~~~l  314 (424)
                      +++++.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998765

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.75  E-value=2.6e-17  Score=166.31  Aligned_cols=154  Identities=16%  Similarity=0.237  Sum_probs=105.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee------------------------------ecCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------------------------VSRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~  186 (424)
                      ...++|+++|++|+|||||+++|+......                              .....++|++.....+..++
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            356899999999999999999998432111                              11246788888877788888


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC--CCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR--HLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~--~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .++.||||||+..+            .......+..+|++++|+|+++  +..........++...+     ..|+++|+
T Consensus        84 ~~i~liDtpG~~~~------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivvi  146 (425)
T PRK12317         84 YYFTIVDCPGHRDF------------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAI  146 (425)
T ss_pred             eEEEEEECCCcccc------------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEE
Confidence            99999999997543            1222344577999999999987  54444444444444432     14689999


Q ss_pred             ecCCCCCChh-hH---HHHHHHHhcCCCC----CeEEEEecCCCcChHHHH
Q 014461          265 NKVDLVTKKK-DL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       265 NK~Dl~~~~~-~~---~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~L~  307 (424)
                      ||+|+..... .+   .+.+..+....++    .+++++||++|.|++++.
T Consensus       147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        147 NKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             EccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            9999975322 11   2223333333333    369999999999998743

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.74  E-value=4.3e-17  Score=168.97  Aligned_cols=158  Identities=18%  Similarity=0.242  Sum_probs=105.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ..++.+|+++|++|+|||||+++|.+..+.. ...++.|.+.....+...+. .+.||||||+..+.         .+..
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~---------~~r~  153 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT---------SMRA  153 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh---------hHHH
Confidence            3467899999999999999999999877653 33455665544444444444 89999999986542         1111


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHh---cCC-CC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFK---HLP-GY  289 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~---~~~-~~  289 (424)
                         ..+..+|++++|+|++++...........+...      +.|+++++||+|+.... ......+..+.   ..+ +.
T Consensus       154 ---rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~------~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~  224 (587)
T TIGR00487       154 ---RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA------NVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGD  224 (587)
T ss_pred             ---hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc------CCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCC
Confidence               345778999999999876544433333333222      47899999999996531 12222222111   111 22


Q ss_pred             CeEEEEecCCCcChHHHHHHHHH
Q 014461          290 ERIFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      .+++++||++|.|+++|+++|..
T Consensus       225 ~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       225 TIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             ceEEEEECCCCCChHHHHHhhhh
Confidence            35899999999999999999865

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.74  E-value=3.5e-17  Score=173.47  Aligned_cols=158  Identities=16%  Similarity=0.214  Sum_probs=108.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++..|+++|++|+|||||+++|.+..+. .+...+.|.+.....+.+.+..+.||||||+..+.         .+.. 
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---------~m~~-  355 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---------AMRA-  355 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch---------hHHH-
Confidence            457899999999999999999999887664 23445566555444556667889999999986542         1122 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHH---hcCC-CCC
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQF---KHLP-GYE  290 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~---~~~~-~~~  290 (424)
                        ..+..+|++++|+|++++........+......      +.|+|+++||+|+.... ......+...   ...+ +..
T Consensus       356 --rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~------~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~v  427 (787)
T PRK05306        356 --RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA------GVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDT  427 (787)
T ss_pred             --hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc------CCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCc
Confidence              235668999999999876544443433333332      47899999999996532 1121111111   1111 224


Q ss_pred             eEEEEecCCCcChHHHHHHHHH
Q 014461          291 RIFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      +++++||++|.|+++|+++|..
T Consensus       428 p~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        428 IFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             eEEEEeCCCCCCchHHHHhhhh
Confidence            6999999999999999999875

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.74  E-value=3.1e-17  Score=137.87  Aligned_cols=141  Identities=18%  Similarity=0.334  Sum_probs=98.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .||+++|++|+|||||+++|.+....  ..   .|..     +.+.+   .++||||-.-..        ..+.......
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~--~~---KTq~-----i~~~~---~~IDTPGEyiE~--------~~~y~aLi~t   60 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR--YK---KTQA-----IEYYD---NTIDTPGEYIEN--------PRFYHALIVT   60 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC--cC---ccce-----eEecc---cEEECChhheeC--------HHHHHHHHHH
Confidence            47999999999999999999986542  11   1211     11223   569999965332        1233444455


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      ..+||+|++|.|++++.......+...   +      ..|+|-|+||+|+....+++.. ...+....|...+|++|+.+
T Consensus        61 a~dad~V~ll~dat~~~~~~pP~fa~~---f------~~pvIGVITK~Dl~~~~~~i~~-a~~~L~~aG~~~if~vS~~~  130 (143)
T PF10662_consen   61 AQDADVVLLLQDATEPRSVFPPGFASM---F------NKPVIGVITKIDLPSDDANIER-AKKWLKNAGVKEIFEVSAVT  130 (143)
T ss_pred             HhhCCEEEEEecCCCCCccCCchhhcc---c------CCCEEEEEECccCccchhhHHH-HHHHHHHcCCCCeEEEECCC
Confidence            678999999999987544333333222   2      3789999999999954455544 44444455777899999999


Q ss_pred             CcChHHHHHHHH
Q 014461          300 GAGLKALTQYLM  311 (424)
Q Consensus       300 g~gi~~L~~~i~  311 (424)
                      |+|+++|.++|.
T Consensus       131 ~eGi~eL~~~L~  142 (143)
T PF10662_consen  131 GEGIEELKDYLE  142 (143)
T ss_pred             CcCHHHHHHHHh
Confidence            999999999985

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.74  E-value=1.2e-16  Score=139.73  Aligned_cols=164  Identities=21%  Similarity=0.299  Sum_probs=105.0

Q ss_pred             EEEEecCCCChhHHHHhHhC-CcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHHHHHhh
Q 014461          142 VGIIGAPNAGKSSIINYMVG-TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVESAWSA  219 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~-~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~~~~~~  219 (424)
                      |+++|.+|+|||||+|.|.+ ......+..+++|.....  +.. +..+.+|||||+........ ...........+..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN   78 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence            78999999999999999994 344445555566554332  222 23899999999865322110 01112223333334


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHH-HHhcCCCCCeEEEEe
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAE-QFKHLPGYERIFMTS  296 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~-~~~~~~~~~~~~~iS  296 (424)
                      ....+++++++|...........+..++....      .|+++|+||+|+.....  ....... .+.......+++++|
T Consensus        79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELG------IPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC------CCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence            45568999999997654444455666776543      68999999999965321  1111112 222123445699999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |+++.|+++++++|.+.+
T Consensus       153 a~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         153 SLKGQGIDELRALIEKWL  170 (170)
T ss_pred             cCCCCCHHHHHHHHHHhC
Confidence            999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.74  E-value=2.2e-17  Score=136.34  Aligned_cols=116  Identities=29%  Similarity=0.478  Sum_probs=88.2

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+.....   .......+..++..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~---~~~~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES---QDNDGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH---HHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch---hhHHHHHHHHHHHHH
Confidence            58999999999999999999987878999999999987777777888999999999876421   111112455567777


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+|++++|+|++......+..+.++++       .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~-------~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPITEDDKNILRELK-------NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSHHHHHHHHHHHH-------TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCCHHHHHHHHHHh-------cCCCEEEEEcC
Confidence            8899999999986532323334444452       24799999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.74  E-value=7.7e-17  Score=139.43  Aligned_cols=153  Identities=14%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (424)
                      |+++|++|||||||+|+|.+..+..  ....+..... ..+..++..+.+|||||.....         .   .....+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~D~~g~~~~~---------~---~~~~~~~   66 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSE--DTIPTVGFNM-RKVTKGNVTLKVWDLGGQPRFR---------S---MWERYCR   66 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCc--CccCCCCcce-EEEEECCEEEEEEECCCCHhHH---------H---HHHHHHh
Confidence            7899999999999999999876642  2222221111 1234456789999999975321         1   1123357


Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--C-CCCCeEEEEec
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERIFMTSG  297 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~~~iSA  297 (424)
                      .+|++++|+|+++..  .......++..+.. ....+.|+++|+||+|+.... ........+..  . .....++++||
T Consensus        67 ~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (159)
T cd04159          67 GVNAIVYVVDAADRT--ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSITDREVSCYSISC  143 (159)
T ss_pred             cCCEEEEEEECCCHH--HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-CHHHHHHHhCcccccCCceEEEEEEe
Confidence            789999999996421  11222233333221 112357999999999987642 22222223211  1 11135899999


Q ss_pred             CCCcChHHHHHHHHH
Q 014461          298 LKGAGLKALTQYLME  312 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~  312 (424)
                      ++|.|+++++++|.+
T Consensus       144 ~~~~gi~~l~~~l~~  158 (159)
T cd04159         144 KEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccCCChHHHHHHHhh
Confidence            999999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.74  E-value=1.5e-16  Score=153.30  Aligned_cols=193  Identities=21%  Similarity=0.227  Sum_probs=123.9

Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec------------------------CCccEEEEeCCCc
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTPGL  197 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~i~l~DtpG~  197 (424)
                      |+++|.||||||||+|+|++... .++++|++|..+..+....                        ...++.+|||||+
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            57999999999999999998875 5789999998877665332                        2246899999999


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-----------CchH-------HHH---------------
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-----------SPDS-------RVI---------------  244 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-----------~~~~-------~~~---------------  244 (424)
                      .....     .....-...+..++.||++++|+|++....           ++..       ++.               
T Consensus        80 v~ga~-----~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~  154 (318)
T cd01899          80 VPGAH-----EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIV  154 (318)
T ss_pred             CCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64321     112233456677899999999999963100           0000       000               


Q ss_pred             -----------------------------HHHHHhccC------------------CCCCCcEEEEEecCCCCCChhhHH
Q 014461          245 -----------------------------RLIERMGKQ------------------APPKQKRVLCMNKVDLVTKKKDLL  277 (424)
Q Consensus       245 -----------------------------~~l~~~~~~------------------~~~~~p~ilV~NK~Dl~~~~~~~~  277 (424)
                                                   ..|++....                  ....+|+|+|+||+|+... ....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~-~~~~  233 (318)
T cd01899         155 RKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA-ENNI  233 (318)
T ss_pred             HHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh-HHHH
Confidence                                         001000000                  0124799999999998643 2222


Q ss_pred             HHHHHHhcCCCCCeEEEEecCCCcChHHHHH-HHHHhccCCCCCCCCCCc--chhhHHHHHHHHHHHHHHhh
Q 014461          278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQ-YLMEQAVQRPWSEDPLTM--SEEVMKNISLEVVRERLLDH  346 (424)
Q Consensus       278 ~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~-~i~~~l~~~~~~~~~~~~--~~~~~~~~~~e~ire~l~~~  346 (424)
                      +   .+........++++||+.+.|+++|.+ .+.++++++++.......  ++..+.  ..+.++..++..
T Consensus       234 ~---~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~~~~~~~~~~~--~l~~i~d~~~~~  300 (318)
T cd01899         234 S---KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITDELGLSEKQKE--ALESIRDEVLDR  300 (318)
T ss_pred             H---HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecccCCCCHHHHH--HHHHHHHHHHHh
Confidence            2   222333456799999999999999998 699999988754433322  444443  335555544443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK09866 hypothetical protein; Provisional

Probab=99.73  E-value=3.3e-16  Score=158.56  Aligned_cols=116  Identities=17%  Similarity=0.185  Sum_probs=81.7

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      .+++|+||||+..+..    ..+...+.   ..+..+|+|+||+|+....+..+..+.+.+...+.    ..|+++|+||
T Consensus       230 ~QIIFVDTPGIhk~~~----~~L~k~M~---eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K----~~PVILVVNK  298 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ----PHLQKMLN---QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQ----SVPLYVLVNK  298 (741)
T ss_pred             CCEEEEECCCCCCccc----hHHHHHHH---HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCC----CCCEEEEEEc
Confidence            6799999999986432    11112222   25788999999999987667767777777765431    2489999999


Q ss_pred             CCCCCCh----hhHHHHHHHH--hcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          267 VDLVTKK----KDLLKVAEQF--KHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       267 ~Dl~~~~----~~~~~~~~~~--~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      +|+.+..    +.+.+.+..+  .....+..+|||||++|.|+++|++.|...
T Consensus       299 IDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        299 FDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             ccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            9986422    2333333323  223456789999999999999999999874

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.8e-17  Score=143.62  Aligned_cols=162  Identities=17%  Similarity=0.181  Sum_probs=121.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+||+++|.+|||||-|+.++....+..-+.. .+....+....+........+|||.|+..++.          +  +
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA----------i--t   80 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA----------I--T   80 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcc----------c--c
Confidence            468899999999999999999998877532221 12222222222333344568999999976531          1  1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      -.+++.+-++++|+|.+.+.+.  ..+..||+++.....+++++++|+||+||.+.+....+..+.+++..+.. ++++|
T Consensus        81 SaYYrgAvGAllVYDITr~~Tf--env~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtS  157 (222)
T KOG0087|consen   81 SAYYRGAVGALLVYDITRRQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETS  157 (222)
T ss_pred             chhhcccceeEEEEechhHHHH--HHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEec
Confidence            1356788999999999875443  47889999998888788999999999999886666666777788776665 99999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |+.+.|+++.|+.+...+
T Consensus       158 Al~~tNVe~aF~~~l~~I  175 (222)
T KOG0087|consen  158 ALDATNVEKAFERVLTEI  175 (222)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            999999999998877655

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.73  E-value=6.1e-17  Score=168.53  Aligned_cols=158  Identities=16%  Similarity=0.236  Sum_probs=109.9

Q ss_pred             EEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .|+++|++|+|||||+++|++.....  .....+.|.+.....+...+..+.+|||||+..+            ...+..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f------------~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF------------ISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH------------HHHHHh
Confidence            68999999999999999999744221  1234466666655556666788999999997432            344455


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChh--hHHHHHHHHhcCCC---CCeE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKK--DLLKVAEQFKHLPG---YERI  292 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~---~~~~  292 (424)
                      .+..+|++++|+|++++..........++...      +.| +++|+||+|+.+...  ...+.+..+....+   ..++
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~i  143 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKI  143 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcE
Confidence            67789999999999876544444444445443      356 999999999986421  12222333332222   2469


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|+++++++|.+.+..
T Consensus       144 i~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       144 FKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             EEEeCCCCCCchhHHHHHHHHHHh
Confidence            999999999999999999876643

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG2484 consensus GTPase [General function prediction only]

Probab=99.73  E-value=4.6e-18  Score=161.51  Aligned_cols=148  Identities=24%  Similarity=0.284  Sum_probs=113.8

Q ss_pred             CCCCCcEEEEeCCCCccCCC-CC--------------------CCCCCCccChhhHHHHHHhcCCeEEEeeccccccchh
Q 014461           42 TENDCDSVFDSSYFRIPTID-DP--------------------QNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRI  100 (424)
Q Consensus        42 ~~~~~d~vie~~dar~p~~~-~~--------------------k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~l  100 (424)
                      .+..+|+|+||.|||+|+++ ++                    ++||++++.+++|+.|++..+++|+|.++++......
T Consensus       143 vve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~  222 (435)
T KOG2484|consen  143 VVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNS  222 (435)
T ss_pred             HHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccccccc
Confidence            44578999999999999999 76                    4499999999999999999999999999976654421


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE
Q 014461          101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG  180 (424)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~  180 (424)
                          .......++..+.+-..|....     ......++++|+|+|.||+||||+||+|...+.+.+++.||.|+.....
T Consensus       223 ----~~~~~s~c~gae~l~~~lgny~-----~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV  293 (435)
T KOG2484|consen  223 ----KNLQSSVCFGAETLMKVLGNYC-----RKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEV  293 (435)
T ss_pred             ----cccccchhhhHHHHHHHhcCcc-----cccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhe
Confidence                0111113344444444443322     2234578899999999999999999999999999999999999875532


Q ss_pred             EEecCCccEEEEeCCCcccCC
Q 014461          181 VMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       181 ~~~~~~~~i~l~DtpG~~~~~  201 (424)
                         .-+..+.|+|.||+....
T Consensus       294 ---~Ldk~i~llDsPgiv~~~  311 (435)
T KOG2484|consen  294 ---KLDKKIRLLDSPGIVPPS  311 (435)
T ss_pred             ---eccCCceeccCCceeecC
Confidence               346789999999998553

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.72  E-value=7.7e-17  Score=169.41  Aligned_cols=160  Identities=15%  Similarity=0.236  Sum_probs=105.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--Eec--CCccEEEEeCCCcccCCCCCChhhhhh
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTK--ADTQICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      ..+...|+++|++|+|||||+++|.+..+.. +...+.|.+.....  +..  .+..+.||||||+..+         ..
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F---------~~  310 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF---------SS  310 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH---------HH
Confidence            3467899999999999999999999876542 33344443322222  222  3578999999997532         11


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHH---hc-C
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQF---KH-L  286 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~---~~-~  286 (424)
                      +.   ...+..+|++++|+|++++........+..+...      +.|+|+|+||+|+.... ......+..+   .. .
T Consensus       311 mr---~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~------~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~  381 (742)
T CHL00189        311 MR---SRGANVTDIAILIIAADDGVKPQTIEAINYIQAA------NVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW  381 (742)
T ss_pred             HH---HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc------CceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence            12   2345678999999999876554443333433322      47899999999997532 1122222111   11 1


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+..+++++||++|.|+++|+++|....
T Consensus       382 g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        382 GGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            1234699999999999999999998754

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.71  E-value=1.1e-16  Score=166.77  Aligned_cols=159  Identities=16%  Similarity=0.219  Sum_probs=102.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcce--------eecC------CCCceeeEEEEEEec-----CCccEEEEeCCCccc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVA--------AVSR------KTNTTTHEVLGVMTK-----ADTQICIFDTPGLML  199 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~--------~~~~------~~~tt~~~~~~~~~~-----~~~~i~l~DtpG~~~  199 (424)
                      ..+++++|++|+|||||+++|+.....        ...+      ..+.|.......+.+     ....+.||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            468999999999999999999863211        0111      124444332222222     236789999999875


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV  279 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~  279 (424)
                      +.         ..+.   ..+..+|++++|+|++++.+............      .+.|+++|+||+|+....  ....
T Consensus        83 F~---------~~v~---~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~--~~~~  142 (595)
T TIGR01393        83 FS---------YEVS---RSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSAD--PERV  142 (595)
T ss_pred             HH---------HHHH---HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccC--HHHH
Confidence            41         1222   34667899999999987655443322222221      147899999999996532  2222


Q ss_pred             HHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          280 AEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       280 ~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      .+++.+..+.  ..++++||++|.|+++|+++|.+.++..
T Consensus       143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            3333333333  2589999999999999999999988643

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.71  E-value=7.2e-17  Score=151.12  Aligned_cols=171  Identities=24%  Similarity=0.340  Sum_probs=122.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      --|++||.||+|||||++++...+. .+.+++.||..+..+++.. .+..+++-|.||+.+..+.     -...-.+.+.
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~-----G~GLG~~FLr  233 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASE-----GVGLGLRFLR  233 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCccccccccc-----CCCccHHHHH
Confidence            4589999999999999999987765 4899999999999998775 5566999999999875421     0111223345


Q ss_pred             hcccccEEEEEEeCCCCCC-CchHH---HHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          219 AVNLFEVLMVVFDVHRHLT-SPDSR---VIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~-~~~~~---~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .+..+.++++|+|++..-. .+...   +..-|+.+.. ...++|.++|+||+|+....+......+.+.+..+....++
T Consensus       234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~  312 (369)
T COG0536         234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL  312 (369)
T ss_pred             HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence            5677899999999974321 12222   3333333322 12247899999999977766667776777766555443334


Q ss_pred             EecCCCcChHHHHHHHHHhccCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      |||.++.|+++|...+.+.+...
T Consensus       313 ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         313 ISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             eehhcccCHHHHHHHHHHHHHHh
Confidence            99999999999999998887543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.71  E-value=2.6e-16  Score=139.74  Aligned_cols=158  Identities=16%  Similarity=0.165  Sum_probs=104.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|..||||||++++|.......+.+..+    .....+...+..+.+||.+|.......         .   
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG~~~~~~~---------w---   75 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGGQESFRPL---------W---   75 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESSSGGGGGG---------G---
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEecccccccccc---------c---
Confidence            568999999999999999999999776554332222    223335568889999999997543210         1   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHH--hcCC--CCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLP--GYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~--~~~~  291 (424)
                      ...+..+|+++||+|+++..  ........+..+- .....+.|+++++||+|+.+.. ...+....+  ....  ....
T Consensus        76 ~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-~~~~i~~~l~l~~l~~~~~~~  152 (175)
T PF00025_consen   76 KSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-SEEEIKEYLGLEKLKNKRPWS  152 (175)
T ss_dssp             GGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-THHHHHHHTTGGGTTSSSCEE
T ss_pred             eeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcc-hhhHHHhhhhhhhcccCCceE
Confidence            12356789999999997532  2222233333322 1222358999999999987642 222222222  2221  1225


Q ss_pred             EEEEecCCCcChHHHHHHHHHh
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ++.|||.+|+|+.+.++||.+.
T Consensus       153 v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  153 VFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHhc
Confidence            8999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=7.5e-17  Score=152.51  Aligned_cols=154  Identities=18%  Similarity=0.212  Sum_probs=103.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCC-----cceeec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~-----~~~~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~  203 (424)
                      +|+++|++|+|||||+++|+..     +...+.            ...++|.+.....+.+.+.++.++||||+..+   
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df---   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF---   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence            4899999999999999999731     111111            23356666666667788999999999997543   


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHH
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ  282 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~  282 (424)
                               .......+..+|++++|+|+..+.......+...+...      +.|+++++||+|+.... ....+.++.
T Consensus        78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~------~~p~ivviNK~D~~~a~~~~~~~~l~~  142 (270)
T cd01886          78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY------NVPRIAFVNKMDRTGADFFRVVEQIRE  142 (270)
T ss_pred             ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence                     22344566778999999999887665555555555543      37899999999997532 233333444


Q ss_pred             HhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ......++.++|+|+..+  +..+.+.+...+
T Consensus       143 ~l~~~~~~~~~Pisa~~~--f~g~vd~~~~~a  172 (270)
T cd01886         143 KLGANPVPLQLPIGEEDD--FRGVVDLIEMKA  172 (270)
T ss_pred             HhCCCceEEEeccccCCC--ceEEEEccccEE
Confidence            444445667899999743  344444444444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.71  E-value=1.9e-16  Score=145.74  Aligned_cols=153  Identities=17%  Similarity=0.270  Sum_probs=100.3

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecC-------------CCCcee------------------------eEEEEEEe
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSR-------------KTNTTT------------------------HEVLGVMT  183 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~-------------~~~tt~------------------------~~~~~~~~  183 (424)
                      +|+++|+.++|||||+++|....+..-..             ..+.|.                        ......+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            48899999999999999998533211000             001110                        00012233


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (424)
                      ..+..+.++||||+..+            .+.+...+  ..+|++++|+|+..+....+..+..++...+      .|++
T Consensus        81 ~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~------ip~i  142 (224)
T cd04165          81 KSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALN------IPVF  142 (224)
T ss_pred             eCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEE
Confidence            45677999999997532            22223333  3689999999998877776667777777654      7899


Q ss_pred             EEEecCCCCCChhhHHHHHHHHhcC----------------------------CCCCeEEEEecCCCcChHHHHHHHHH
Q 014461          262 LCMNKVDLVTKKKDLLKVAEQFKHL----------------------------PGYERIFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       262 lV~NK~Dl~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      +|+||+|+.+. .......+.+.+.                            ....++|++||.+|.|+++|.++|..
T Consensus       143 vvvNK~D~~~~-~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         143 VVVTKIDLAPA-NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             EEEECccccCH-HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            99999998753 2333333332211                            12337999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.70  E-value=4.6e-16  Score=162.48  Aligned_cols=157  Identities=15%  Similarity=0.268  Sum_probs=108.5

Q ss_pred             EEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      -|+++|++++|||||+++|+|.....  .....+.|.+.....+.. ++..+.+|||||+..+            ...+.
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f------------i~~m~   69 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF------------LSNML   69 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH------------HHHHH
Confidence            48999999999999999999754321  223346666554433432 4567899999997432            34455


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHHH---HHHHHhcCCC--CCe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK---VAEQFKHLPG--YER  291 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~~---~~~~~~~~~~--~~~  291 (424)
                      ..+..+|++++|+|++.+..........++...+      .| +++|+||+|+.+. .....   .+..+....+  ..+
T Consensus        70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lg------i~~iIVVlNKiDlv~~-~~~~~v~~ei~~~l~~~~~~~~~  142 (614)
T PRK10512         70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLTG------NPMLTVALTKADRVDE-ARIAEVRRQVKAVLREYGFAEAK  142 (614)
T ss_pred             HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEECCccCCH-HHHHHHHHHHHHHHHhcCCCCCc
Confidence            6678899999999998776666555666665543      34 5799999999763 22222   2222222222  246


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +|++||++|.|+++|+++|.+....
T Consensus       143 ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        143 LFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            9999999999999999999876543

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.70  E-value=3.7e-16  Score=143.46  Aligned_cols=165  Identities=13%  Similarity=0.120  Sum_probs=102.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|+++|++|||||||+++++.+.+.. .....+............+...+.+|||+|...+..          +. 
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~----------~~-   75 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG----------LR-   75 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh----------hh-
Confidence            456899999999999999998776544321 111112222111111233446788999999754311          11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ...+..+|++++|+|.++..+  ...+..|+..+.... .+.|+++|+||+|+.... ...+.. .+....+. .++++
T Consensus        76 -~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~~-~~~~~~-~~~~~~~~-~~~e~  148 (215)
T PTZ00132         76 -DGYYIKGQCAIIMFDVTSRIT--YKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDRQ-VKARQI-TFHRKKNL-QYYDI  148 (215)
T ss_pred             -HHHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhC-CCCCEEEEEECccCcccc-CCHHHH-HHHHHcCC-EEEEE
Confidence             123456899999999975432  223334444433221 357899999999986532 111222 23333344 48999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      ||++|.|+++++.+|.+.+...+.
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhccc
Confidence            999999999999999998876553

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.9e-16  Score=129.97  Aligned_cols=163  Identities=15%  Similarity=0.166  Sum_probs=117.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ..++.++|.+.+|||||+-+.++..+... -...|...............++.+|||.|....+            .-+-
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryr------------tiTT   88 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR------------TITT   88 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhh------------HHHH
Confidence            45899999999999999999998765310 0000111010000111234568899999986531            1123


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+++++++|+++|.++  .+....+.+|+..+......+.|+|+|+||||+..++....+....+.+..|+. +|+.||
T Consensus        89 ayyRgamgfiLmyDitN--eeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSa  165 (193)
T KOG0093|consen   89 AYYRGAMGFILMYDITN--EESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSA  165 (193)
T ss_pred             HHhhccceEEEEEecCC--HHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH-Hhhhcc
Confidence            45788999999999975  334456677877777666778999999999999887666666777788888996 999999


Q ss_pred             CCCcChHHHHHHHHHhccC
Q 014461          298 LKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~  316 (424)
                      |.+.|+.++|+.+...+..
T Consensus       166 K~NinVk~~Fe~lv~~Ic~  184 (193)
T KOG0093|consen  166 KENINVKQVFERLVDIICD  184 (193)
T ss_pred             cccccHHHHHHHHHHHHHH
Confidence            9999999999999887643

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.70  E-value=1.6e-16  Score=146.35  Aligned_cols=147  Identities=21%  Similarity=0.263  Sum_probs=95.3

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcc------------------------------eeecCCCCceeeEEEEEEecCCccEE
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKV------------------------------AAVSRKTNTTTHEVLGVMTKADTQIC  190 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~~~i~  190 (424)
                      +|+++|++++|||||+.+|+...-                              .......++|++.....+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999963110                              00112346777777777778899999


Q ss_pred             EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      +|||||+..+            .......+..+|++++|+|++++       ...............+     ..|+++|
T Consensus        81 liDtpG~~~~------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~iiiv  143 (219)
T cd01883          81 ILDAPGHRDF------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLG-----VKQLIVA  143 (219)
T ss_pred             EEECCChHHH------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcC-----CCeEEEE
Confidence            9999997532            22334456779999999999863       1112222223333222     2578999


Q ss_pred             EecCCCCCC---hhhHHHHHHHH---hcCCCC----CeEEEEecCCCcChH
Q 014461          264 MNKVDLVTK---KKDLLKVAEQF---KHLPGY----ERIFMTSGLKGAGLK  304 (424)
Q Consensus       264 ~NK~Dl~~~---~~~~~~~~~~~---~~~~~~----~~~~~iSA~~g~gi~  304 (424)
                      +||+|+...   ........+.+   ....++    .++++|||++|.|++
T Consensus       144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            999999732   22222223222   222222    359999999999998

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12736 elongation factor Tu; Reviewed

Probab=99.69  E-value=4.3e-16  Score=155.56  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=111.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcc----------e-----eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV----------A-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~----------~-----~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      ..+..+|+++|+.++|||||+++|++...          .     ......++|.+.....+..++.++.++||||+.++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            34578999999999999999999986210          0     01124466776655555566778999999996532


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---  276 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~---  276 (424)
                                  +......+..+|++++|+|+..+........+.++...+      .| +|+++||+|+....+..   
T Consensus        89 ------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g------~~~~IvviNK~D~~~~~~~~~~i  150 (394)
T PRK12736         89 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG------VPYLVVFLNKVDLVDDEELLELV  150 (394)
T ss_pred             ------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC------CCEEEEEEEecCCcchHHHHHHH
Confidence                        334455567889999999998776666556666665543      56 67899999997532211   


Q ss_pred             HHHHHHHhcCCCC----CeEEEEecCCCc--------ChHHHHHHHHHhcc
Q 014461          277 LKVAEQFKHLPGY----ERIFMTSGLKGA--------GLKALTQYLMEQAV  315 (424)
Q Consensus       277 ~~~~~~~~~~~~~----~~~~~iSA~~g~--------gi~~L~~~i~~~l~  315 (424)
                      .+.+..+....++    .+++++||++|.        ++++|++.|.+.++
T Consensus       151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        151 EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            1122233222332    369999999983        68899999988875

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.69  E-value=3.2e-16  Score=162.20  Aligned_cols=156  Identities=18%  Similarity=0.285  Sum_probs=98.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCC-ceeeEEEEEEe------------------cCCccEEEEeCCCcc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMT------------------KADTQICIFDTPGLM  198 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-tt~~~~~~~~~------------------~~~~~i~l~DtpG~~  198 (424)
                      +++.|+++|++|+|||||+|+|++..+.  ...++ +|.+.-...+.                  ....++.+|||||+.
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e   80 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE   80 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence            4678999999999999999999987653  22222 33321111110                  011248899999975


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh----
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK----  274 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~----  274 (424)
                      .+.         .+.   ...+..+|++++|+|++++..........++...      +.|+++++||+|+.....    
T Consensus        81 ~f~---------~l~---~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~------~vpiIVv~NK~Dl~~~~~~~~~  142 (590)
T TIGR00491        81 AFT---------NLR---KRGGALADLAILIVDINEGFKPQTQEALNILRMY------KTPFVVAANKIDRIPGWRSHEG  142 (590)
T ss_pred             hHH---------HHH---HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc------CCCEEEEEECCCccchhhhccC
Confidence            431         111   1245678999999999876655544444444432      478999999999964210    


Q ss_pred             ------------hH--------HHHHHHHh-------------cCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          275 ------------DL--------LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       275 ------------~~--------~~~~~~~~-------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                                  ..        ......+.             +..+..+++++||++|+|+++|.++|...
T Consensus       143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                        00        00011112             12233479999999999999999988643

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>CHL00071 tufA elongation factor Tu

Probab=99.69  E-value=3.4e-16  Score=157.11  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ....+|+++|++|+|||||+|+|++....               ......++|.+.....+..++.++.|+||||+..  
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~--   87 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--   87 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH--
Confidence            45689999999999999999999864211               1122356676665555666778899999999642  


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---H
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---L  277 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~---~  277 (424)
                                .+..++..+..+|++++|+|+..+....+......+...+      .| +|+++||+|+.......   .
T Consensus        88 ----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g------~~~iIvvvNK~D~~~~~~~~~~~~  151 (409)
T CHL00071         88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG------VPNIVVFLNKEDQVDDEELLELVE  151 (409)
T ss_pred             ----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEccCCCCHHHHHHHHH
Confidence                      2445556677899999999998777666656666665543      66 77899999998643211   1


Q ss_pred             HHHHHHhcCCCC----CeEEEEecCCCcC
Q 014461          278 KVAEQFKHLPGY----ERIFMTSGLKGAG  302 (424)
Q Consensus       278 ~~~~~~~~~~~~----~~~~~iSA~~g~g  302 (424)
                      +.+..+....++    .+++++||.+|.+
T Consensus       152 ~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        152 LEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence            122222222222    4699999999874

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.69  E-value=6.2e-16  Score=143.73  Aligned_cols=113  Identities=20%  Similarity=0.363  Sum_probs=77.9

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcce-----eec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVA-----AVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~-----~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~  203 (424)
                      +|+++|++|+|||||+++|+.....     .+.            ...+.|.......+.+.+.++.+|||||+..+   
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f---   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF---   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence            4899999999999999999853211     111            11123333344456678889999999998653   


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                               .......++.+|++++|+|++++.......+...+...      +.|+++++||+|+..
T Consensus        78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~------~~P~iivvNK~D~~~  130 (237)
T cd04168          78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL------NIPTIIFVNKIDRAG  130 (237)
T ss_pred             ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECccccC
Confidence                     12233456778999999999877654444555555443      378999999999875

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.68  E-value=7.3e-16  Score=154.03  Aligned_cols=163  Identities=15%  Similarity=0.170  Sum_probs=109.4

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCC-------cce--------eecCCCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT-------KVA--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~-------~~~--------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~  199 (424)
                      ......+|+++|++++|||||+++|++.       ...        ......+.|.+.....+..++.++.|+||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3456789999999999999999999862       110        0112346666665555666778899999999742


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEEecCCCCCChhh---
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKD---  275 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i-lV~NK~Dl~~~~~~---  275 (424)
                                  .+..++..+..+|++++|+|+..+........+..+...      +.|.+ +++||+|+....+.   
T Consensus        88 ------------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~  149 (396)
T PRK12735         88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLEL  149 (396)
T ss_pred             ------------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHH
Confidence                        244555667789999999999876655544444555443      25655 67999999753221   


Q ss_pred             HHHHHHHHhcCCCC----CeEEEEecCCCc----------ChHHHHHHHHHhcc
Q 014461          276 LLKVAEQFKHLPGY----ERIFMTSGLKGA----------GLKALTQYLMEQAV  315 (424)
Q Consensus       276 ~~~~~~~~~~~~~~----~~~~~iSA~~g~----------gi~~L~~~i~~~l~  315 (424)
                      +...+..+....++    .+++++||++|.          ++.+|++.|.+.++
T Consensus       150 ~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            11123333333332    468999999984          67888888887664

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.68  E-value=5e-16  Score=161.95  Aligned_cols=160  Identities=17%  Similarity=0.231  Sum_probs=103.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcce--------eec------CCCCceeeEEEEEEe-----cCCccEEEEeCCCcc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA--------AVS------RKTNTTTHEVLGVMT-----KADTQICIFDTPGLM  198 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~--------~~~------~~~~tt~~~~~~~~~-----~~~~~i~l~DtpG~~  198 (424)
                      +..+++++|+.++|||||+++|+...-.        ...      ...+.|.......+.     ..+..+.||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            4568999999999999999999752110        011      112333332222222     225679999999987


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~  278 (424)
                      ++.         ..+.   ..+..+|++++|+|++++..........++...      +.|+++|+||+|+....  ...
T Consensus        86 dF~---------~~v~---~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~------~lpiIvViNKiDl~~a~--~~~  145 (600)
T PRK05433         86 DFS---------YEVS---RSLAACEGALLVVDASQGVEAQTLANVYLALEN------DLEIIPVLNKIDLPAAD--PER  145 (600)
T ss_pred             HHH---------HHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEEEECCCCCccc--HHH
Confidence            541         2223   335678999999999876654433222222221      47899999999986532  222


Q ss_pred             HHHHHhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          279 VAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       279 ~~~~~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ..+.+.+..+..  .++++||++|.|+++|+++|.+.++..
T Consensus       146 v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        146 VKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            233343333332  489999999999999999999988643

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.68  E-value=4.4e-16  Score=137.30  Aligned_cols=143  Identities=22%  Similarity=0.302  Sum_probs=92.5

Q ss_pred             cEEEEeCCCCccCCC---------------------CCCCCCCCccChhhHHHHHHhcCCeEEEeeccccccchhhhHH-
Q 014461           47 DSVFDSSYFRIPTID---------------------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEE-  104 (424)
Q Consensus        47 d~vie~~dar~p~~~---------------------~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~l~~~~-  104 (424)
                      |+++++.|+|.|+.+                     .||+||++++....|..+|.+....+.|.++.......+.... 
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            567777777766554                     3366999999999999999999888888777443322221000 


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE
Q 014461          105 -------EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE  177 (424)
Q Consensus       105 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~  177 (424)
                             ........+....+...++...     .+.......+++++|.||+|||||+|+|.+.+.+.++..+++|+..
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~  155 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNYS-----RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM  155 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHHh-----hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce
Confidence                   0000000000111111111100     1122344589999999999999999999999998899999999976


Q ss_pred             EEEEEecCCccEEEEeCCCc
Q 014461          178 VLGVMTKADTQICIFDTPGL  197 (424)
Q Consensus       178 ~~~~~~~~~~~i~l~DtpG~  197 (424)
                      .....   +.++.++||||+
T Consensus       156 ~~~~~---~~~~~l~DtPGi  172 (172)
T cd04178         156 QEVHL---DKKVKLLDSPGI  172 (172)
T ss_pred             EEEEe---CCCEEEEECcCC
Confidence            65433   357899999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.68  E-value=2.1e-16  Score=129.90  Aligned_cols=156  Identities=22%  Similarity=0.222  Sum_probs=114.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceee--EEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH--EVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~--~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ++.+|+|.||+|||+|+-++....+.   ....+|..  .....+..  +...+.+|||.|...+.         .+.. 
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs---~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFr---------tits-   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFS---GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFR---------TITS-   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccc---cceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHH---------HHHH-
Confidence            34679999999999999999877553   22222222  12222333  34568899999976431         1111 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                        ..++..+++++|+|+++  .++...+..||++...+.. ..|-++|+||.|..+.+....+....|....+.. .|++
T Consensus        76 --tyyrgthgv~vVYDVTn--~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FET  149 (198)
T KOG0079|consen   76 --TYYRGTHGVIVVYDVTN--GESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFET  149 (198)
T ss_pred             --HHccCCceEEEEEECcc--hhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCch-heeh
Confidence              23567899999999976  3445678899999876654 5899999999999887666666677777777776 9999


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||+...|++..|.-|.++.
T Consensus       150 SaKe~~NvE~mF~cit~qv  168 (198)
T KOG0079|consen  150 SAKENENVEAMFHCITKQV  168 (198)
T ss_pred             hhhhcccchHHHHHHHHHH
Confidence            9999999999999988765

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.67  E-value=1.1e-15  Score=153.26  Aligned_cols=163  Identities=19%  Similarity=0.259  Sum_probs=100.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEE--------------------Eec------CCcc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGV--------------------MTK------ADTQ  188 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~--------------------~~~------~~~~  188 (424)
                      +...+|+++|++++|||||+++|.+.....  .....+.|.......                    +..      .+..
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            346889999999999999999997642210  010112221111000                    001      1357


Q ss_pred             EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (424)
Q Consensus       189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~  267 (424)
                      +.+|||||+..+            ....+..+..+|++++|+|++++. .......+..+...+     ..|+++|+||+
T Consensus        82 i~liDtPGh~~f------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-----i~~iIVvvNK~  144 (406)
T TIGR03680        82 VSFVDAPGHETL------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-----IKNIVIVQNKI  144 (406)
T ss_pred             EEEEECCCHHHH------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-----CCeEEEEEEcc
Confidence            899999997532            233444556789999999998765 333334444444332     24689999999


Q ss_pred             CCCCChhh--HHHHHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          268 DLVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       268 Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      |+......  ..+.+..+....  ...+++++||++|.|+++|+++|...++.
T Consensus       145 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       145 DLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             ccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence            99864211  111222222211  12359999999999999999999987753

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.67  E-value=1.2e-15  Score=153.95  Aligned_cols=160  Identities=20%  Similarity=0.241  Sum_probs=109.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC------cce---------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~------~~~---------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ....+|+++|+.++|||||+++|.+.      ...         ......++|.+.....+..++.++.|+||||+..+ 
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f-  137 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY-  137 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch-
Confidence            45789999999999999999999732      111         11223677887766667777889999999998532 


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHHHH-
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLKV-  279 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~-  279 (424)
                                 +......+..+|++++|+|+..+....+.....++...+      .| +|+++||+|+.+... ..+. 
T Consensus       138 -----------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g------ip~iIvviNKiDlv~~~~-~~~~i  199 (447)
T PLN03127        138 -----------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG------VPSLVVFLNKVDVVDDEE-LLELV  199 (447)
T ss_pred             -----------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEEEeeccCCHHH-HHHHH
Confidence                       333344556789999999998776666666666666553      67 578999999986322 2222 


Q ss_pred             ---HHHHhcCCCC----CeEEEEecC---CCcC-------hHHHHHHHHHhcc
Q 014461          280 ---AEQFKHLPGY----ERIFMTSGL---KGAG-------LKALTQYLMEQAV  315 (424)
Q Consensus       280 ---~~~~~~~~~~----~~~~~iSA~---~g~g-------i~~L~~~i~~~l~  315 (424)
                         +..+....++    .+++++||.   +|.|       +.+|+++|.+.++
T Consensus       200 ~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        200 EMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence               2222222222    358888876   4555       7889999888775

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.67  E-value=1.4e-15  Score=153.67  Aligned_cols=153  Identities=16%  Similarity=0.219  Sum_probs=100.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--ce----------------------------eecCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~----------------------------~~~~~~~tt~~~~~~~~~~~~  186 (424)
                      ....+|+++|+.++|||||+++|+...  +.                            ......++|.+.....+..++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            356889999999999999999998411  10                            011233677777666677788


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC---CchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT---SPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~---~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      ..+.+|||||+..+            .......+..+|++++|+|++++..   ........++...+     ..|+++|
T Consensus        85 ~~i~iiDtpGh~~f------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVv  147 (426)
T TIGR00483        85 YEVTIVDCPGHRDF------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVA  147 (426)
T ss_pred             eEEEEEECCCHHHH------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEE
Confidence            89999999996432            3334445678999999999987622   22222222233322     2468999


Q ss_pred             EecCCCCCC-hhhH---HHHHHHHhcCCCC----CeEEEEecCCCcChHHH
Q 014461          264 MNKVDLVTK-KKDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       264 ~NK~Dl~~~-~~~~---~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~L  306 (424)
                      +||+|+... ....   .+.++.+.+..++    .+++++||++|.|++++
T Consensus       148 iNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       148 INKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             EEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence            999999752 2222   2233333333332    36999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.66  E-value=1.3e-15  Score=152.09  Aligned_cols=162  Identities=16%  Similarity=0.178  Sum_probs=111.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      .....+|+++|+.++|||||+++|++....               ......++|.+.....+..++.++.|+||||+.. 
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~-   87 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD-   87 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH-
Confidence            356789999999999999999999862110               0112456777766555666778899999999742 


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEEecCCCCCChhhH---
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKDL---  276 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i-lV~NK~Dl~~~~~~~---  276 (424)
                                 .+..+...+..+|++++|+|+..+....+.....++...+      .|.+ +++||+|+.......   
T Consensus        88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g------~p~iiVvvNK~D~~~~~~~~~~~  150 (396)
T PRK00049         88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLELV  150 (396)
T ss_pred             -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC------CCEEEEEEeecCCcchHHHHHHH
Confidence                       2444556678899999999998776666556666666543      6765 689999997532212   


Q ss_pred             HHHHHHHhcCCCC----CeEEEEecCCCc----------ChHHHHHHHHHhcc
Q 014461          277 LKVAEQFKHLPGY----ERIFMTSGLKGA----------GLKALTQYLMEQAV  315 (424)
Q Consensus       277 ~~~~~~~~~~~~~----~~~~~iSA~~g~----------gi~~L~~~i~~~l~  315 (424)
                      ...+..+....++    .+++++||++|.          |+..|+++|.+.++
T Consensus       151 ~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        151 EMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            1122222222222    468999999875          57788888887654

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.2e-15  Score=125.98  Aligned_cols=159  Identities=18%  Similarity=0.205  Sum_probs=115.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      -++++++|+.|.|||.|+..++..++..- +...+....  ..++..  ...++.+|||.|+..++            .-
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFg--SrIinVGgK~vKLQIWDTAGQErFR------------SV   74 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFG--SRIVNVGGKTVKLQIWDTAGQERFR------------SV   74 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeec--ceeeeecCcEEEEEEeecccHHHHH------------HH
Confidence            36899999999999999999998776421 111121111  112222  34468899999986542            12


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      +..+++.+-..++|+|++.  .+....+..||........+++-+++++||.|+...++........|+...... +.++
T Consensus        75 tRsYYRGAAGAlLVYD~Ts--rdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flET  151 (214)
T KOG0086|consen   75 TRSYYRGAAGALLVYDITS--RDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLET  151 (214)
T ss_pred             HHHHhccccceEEEEeccc--hhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeee
Confidence            3356788899999999975  344456778888888777777888999999999887776666677787776664 8999


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||++|+|+++.|-.....+
T Consensus       152 Sa~TGeNVEEaFl~c~~tI  170 (214)
T KOG0086|consen  152 SALTGENVEEAFLKCARTI  170 (214)
T ss_pred             cccccccHHHHHHHHHHHH
Confidence            9999999999886655443

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.66  E-value=1.5e-15  Score=129.22  Aligned_cols=152  Identities=19%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461          144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (424)
Q Consensus       144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (424)
                      ++|++|+|||||+|++.+..... .....+..........  ..+..+.+|||||.....            ........
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~~~~~~   67 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR------------SLRRLYYR   67 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHHH------------hHHHHHhc
Confidence            57999999999999999876521 1111111111111122  235679999999976431            11133457


Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHH-HHHhccCCCCCCcEEEEEecCCCCCChhhHHHH-HHHHhcCCCCCeEEEEecCC
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRL-IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-AEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~-l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~iSA~~  299 (424)
                      .+|++++|+|++.......  ...+ ..........+.|+++|+||+|+.......... ...... ....+++++|+.+
T Consensus        68 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~  144 (157)
T cd00882          68 GADGIILVYDVTDRESFEN--VKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK-ELGVPYFETSAKT  144 (157)
T ss_pred             CCCEEEEEEECcCHHHHHH--HHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh-hcCCcEEEEecCC
Confidence            7899999999975322221  1111 111111223358999999999997643222211 222222 2334699999999


Q ss_pred             CcChHHHHHHHH
Q 014461          300 GAGLKALTQYLM  311 (424)
Q Consensus       300 g~gi~~L~~~i~  311 (424)
                      |.|+++++++|.
T Consensus       145 ~~~i~~~~~~l~  156 (157)
T cd00882         145 GENVEELFEELA  156 (157)
T ss_pred             CCChHHHHHHHh
Confidence            999999999885

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.65  E-value=1.6e-15  Score=157.73  Aligned_cols=159  Identities=18%  Similarity=0.241  Sum_probs=108.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCc--cee---e----------cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTK--VAA---V----------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY  204 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~--~~~---~----------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~  204 (424)
                      .+|+++|+.++|||||+++|+...  +..   +          ....+.|.......+.+.+..+.+|||||+.++    
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF----   77 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF----   77 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence            479999999999999999998521  110   1          112245555555557788899999999998643    


Q ss_pred             ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHH
Q 014461          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQ  282 (424)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~  282 (424)
                              .......+..+|++++|+|++.+.......++..+...      +.|+++|+||+|+...+.  ...+..+.
T Consensus        78 --------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l  143 (594)
T TIGR01394        78 --------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDL  143 (594)
T ss_pred             --------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHH
Confidence                    11223445678999999999876544444455544443      378999999999965321  22222222


Q ss_pred             Hhc------CCCCCeEEEEecCCCc----------ChHHHHHHHHHhccCC
Q 014461          283 FKH------LPGYERIFMTSGLKGA----------GLKALTQYLMEQAVQR  317 (424)
Q Consensus       283 ~~~------~~~~~~~~~iSA~~g~----------gi~~L~~~i~~~l~~~  317 (424)
                      +..      ...+ +++++||++|.          |++.|++.|.+.++..
T Consensus       144 ~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       144 FAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             HHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            321      1223 48999999996          8999999999998754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.65  E-value=1.9e-15  Score=151.47  Aligned_cols=163  Identities=19%  Similarity=0.277  Sum_probs=102.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcce--eecCCCCceeeEEEEEEec---------------------C-----Ccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTK---------------------A-----DTQ  188 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~--~~~~~~~tt~~~~~~~~~~---------------------~-----~~~  188 (424)
                      ....+|+++|+.++|||||+.+|.+....  ......+.|..........                     +     ...
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999999763211  0111123333221110000                     0     257


Q ss_pred             EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (424)
Q Consensus       189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~  267 (424)
                      +.+|||||...+            ...++..+..+|++++|+|++++. .......+.++...+     ..|+++|+||+
T Consensus        87 i~liDtPG~~~f------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~-----i~~iiVVlNK~  149 (411)
T PRK04000         87 VSFVDAPGHETL------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG-----IKNIVIVQNKI  149 (411)
T ss_pred             EEEEECCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEEee
Confidence            899999996432            334455567789999999998664 333334444444332     23689999999


Q ss_pred             CCCCChhh--HHHHHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          268 DLVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       268 Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      |+.+....  ..+....+....  ...+++++||++|.|+++|+++|.+.++.
T Consensus       150 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        150 DLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            99764221  112222222211  12369999999999999999999987753

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=127.81  Aligned_cols=161  Identities=19%  Similarity=0.230  Sum_probs=117.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEE---EEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL---GVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~---~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ..++..++|.+-||||+|+..++.++++..++.. ...+-..   ..-.....++.+|||.|+..+++            
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdpt-vgvdffarlie~~pg~riklqlwdtagqerfrs------------   73 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT-VGVDFFARLIELRPGYRIKLQLWDTAGQERFRS------------   73 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCc-cchHHHHHHHhcCCCcEEEEEEeeccchHHHHH------------
Confidence            3578999999999999999999999888666432 1111100   00112234578999999875521            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCc-EEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQK-RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      -+.++++++-.+++|+|.+++  ...+.+..|+++...... |..+ +.+|+.|+|+...++...+..+.+....+.. +
T Consensus        74 itksyyrnsvgvllvyditnr--~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-F  150 (213)
T KOG0091|consen   74 ITKSYYRNSVGVLLVYDITNR--ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-F  150 (213)
T ss_pred             HHHHHhhcccceEEEEeccch--hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-E
Confidence            233456777899999999863  345567788887654433 4444 4579999999988888888889999888886 9


Q ss_pred             EEEecCCCcChHHHHHHHHHhc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +++||++|.|+++.++.|.+.+
T Consensus       151 VETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  151 VETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             EEecccCCCcHHHHHHHHHHHH
Confidence            9999999999999998877654

>PRK10218 GTP-binding protein; Provisional

Probab=99.65  E-value=2.7e-15  Score=155.80  Aligned_cols=161  Identities=19%  Similarity=0.237  Sum_probs=109.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC--ccee-------------ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAA-------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~--~~~~-------------~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      ...+|+++|+.++|||||+++|+..  .+..             .....+.|.......+.+.+..+.+|||||+.++. 
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-   82 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-   82 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH-
Confidence            3578999999999999999999862  1111             01123455555555567788999999999986542 


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHH
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVA  280 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~  280 (424)
                              .   .....+..+|++++|+|++++.......++..+...      +.|.++|+||+|+....  ..+.+..
T Consensus        83 --------~---~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~  145 (607)
T PRK10218         83 --------G---EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVF  145 (607)
T ss_pred             --------H---HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHH
Confidence                    1   122346778999999999876555444444444443      37889999999987532  2222333


Q ss_pred             HHHhcC------CCCCeEEEEecCCCc----------ChHHHHHHHHHhccCC
Q 014461          281 EQFKHL------PGYERIFMTSGLKGA----------GLKALTQYLMEQAVQR  317 (424)
Q Consensus       281 ~~~~~~------~~~~~~~~iSA~~g~----------gi~~L~~~i~~~l~~~  317 (424)
                      +.+...      ..+ +++++||++|.          |+..|++.|.+.++..
T Consensus       146 ~l~~~l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        146 DLFVNLDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             HHHhccCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            333221      122 48999999998          6899999999998754

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.65  E-value=1.5e-16  Score=132.07  Aligned_cols=162  Identities=17%  Similarity=0.173  Sum_probs=118.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE--EEE--EEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE--VLG--VMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~--~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      .-.++++++|..-||||||+-+++..++..   ..-+|...  ...  .+.....++.+|||.|+..+...-+       
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP-------   80 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP-------   80 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-------
Confidence            346899999999999999999998776531   11111100  001  1223345689999999876532111       


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                           -+++.++.+++|+|.++  .+....+..|+.++.......+-+++|+||+|+.+.++...+..+.+.+..+.. +
T Consensus        81 -----IYYRgSnGalLVyDITD--rdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y  152 (218)
T KOG0088|consen   81 -----IYYRGSNGALLVYDITD--RDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-Y  152 (218)
T ss_pred             -----eEEeCCCceEEEEeccc--hHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-h
Confidence                 24678899999999986  345567888888876655555778999999999887777777778888777776 9


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||+.+.||.++|+.|...+.+
T Consensus       153 ~eTSAk~N~Gi~elFe~Lt~~MiE  176 (218)
T KOG0088|consen  153 METSAKDNVGISELFESLTAKMIE  176 (218)
T ss_pred             eecccccccCHHHHHHHHHHHHHH
Confidence            999999999999999999877654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.64  E-value=6.2e-15  Score=142.19  Aligned_cols=186  Identities=18%  Similarity=0.247  Sum_probs=116.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCcee-------------------e-EEEE---------
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------------------H-EVLG---------  180 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~-------------------~-~~~~---------  180 (424)
                      ..+...|+|.|.||+|||||++.|..      .++..+...+.+..                   . ....         
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~  132 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG  132 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence            45678999999999999999998752      23332222221110                   0 0000         


Q ss_pred             ----------EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh
Q 014461          181 ----------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM  250 (424)
Q Consensus       181 ----------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~  250 (424)
                                .+...+..++|+||+|......     .          ....+|++++|.+...  .........-+-+ 
T Consensus       133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~-----~----------i~~~aD~vlvv~~p~~--gd~iq~~k~gi~E-  194 (332)
T PRK09435        133 VARKTRETMLLCEAAGYDVILVETVGVGQSET-----A----------VAGMVDFFLLLQLPGA--GDELQGIKKGIME-  194 (332)
T ss_pred             hHHHHHHHHHHHhccCCCEEEEECCCCccchh-----H----------HHHhCCEEEEEecCCc--hHHHHHHHhhhhh-
Confidence                      0122367899999999874310     0          1345899999986421  1111111111111 


Q ss_pred             ccCCCCCCcEEEEEecCCCCCChhhHHHHHH----HHhcCC-----CCCeEEEEecCCCcChHHHHHHHHHhccCCCCCC
Q 014461          251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE----QFKHLP-----GYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE  321 (424)
Q Consensus       251 ~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~----~~~~~~-----~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~  321 (424)
                             ...++|+||+|+.... .......    .+....     ..++++++||++|.|+++|++.|.++++   +.+
T Consensus       195 -------~aDIiVVNKaDl~~~~-~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~  263 (332)
T PRK09435        195 -------LADLIVINKADGDNKT-AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALT  263 (332)
T ss_pred             -------hhheEEeehhcccchh-HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---Hhc
Confidence                   2248999999987642 1122222    222111     1246999999999999999999999875   566


Q ss_pred             CCCCcch---hhHHHHHHHHHHHHHHhhcCcc
Q 014461          322 DPLTMSE---EVMKNISLEVVRERLLDHVHQE  350 (424)
Q Consensus       322 ~~~~~~~---~~~~~~~~e~ire~l~~~l~~e  350 (424)
                      +...+++   +..++++.+++|+++++.+...
T Consensus       264 ~sg~l~~~r~~~~~~~v~elire~l~~~~~~~  295 (332)
T PRK09435        264 ASGEFAARRREQQVDWMWEMVEEGLLDRLFAD  295 (332)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7777777   6777788999999999988543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.64  E-value=3.4e-15  Score=149.26  Aligned_cols=161  Identities=17%  Similarity=0.203  Sum_probs=105.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC------cce---------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~------~~~---------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      ..+..+|+++|+.++|||||+++|++.      ...         ......++|.+.....+...+.++.||||||+..+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            345789999999999999999999842      100         01123567777655555566778999999998542


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEecCCCCCChhhH---
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMNKVDLVTKKKDL---  276 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~NK~Dl~~~~~~~---  276 (424)
                                  ....+..+..+|++++|+|+..+..........++...+      .|. |+|+||+|+.+.....   
T Consensus        89 ------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~~  150 (394)
T TIGR00485        89 ------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLELV  150 (394)
T ss_pred             ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEecccCCHHHHHHHH
Confidence                        233344566789999999998766555555555555443      555 4689999998643222   


Q ss_pred             HHHHHHHhcCCCC----CeEEEEecCCCc--------ChHHHHHHHHHhc
Q 014461          277 LKVAEQFKHLPGY----ERIFMTSGLKGA--------GLKALTQYLMEQA  314 (424)
Q Consensus       277 ~~~~~~~~~~~~~----~~~~~iSA~~g~--------gi~~L~~~i~~~l  314 (424)
                      .+.++.+....++    .+++++||++|.        ++.+|++.|.+.+
T Consensus       151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~  200 (394)
T TIGR00485       151 EMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI  200 (394)
T ss_pred             HHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence            1223333333332    469999999885        3456666665544

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.64  E-value=2.6e-15  Score=150.45  Aligned_cols=149  Identities=18%  Similarity=0.283  Sum_probs=99.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCccee--------------------------------ecCCCCceeeEEEEEEecCCc
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAA--------------------------------VSRKTNTTTHEVLGVMTKADT  187 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~--------------------------------~~~~~~tt~~~~~~~~~~~~~  187 (424)
                      ++|+++|+.++|||||+++|+...-..                                .....+.|.+.....+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            479999999999999999997421110                                001123456655556667788


Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~  267 (424)
                      ++.|+||||+..+            .......+..+|++++|+|+..+...........+..++     ..++++|+||+
T Consensus        81 ~~~liDtPGh~~f------------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-----~~~iivviNK~  143 (406)
T TIGR02034        81 KFIVADTPGHEQY------------TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-----IRHVVLAVNKM  143 (406)
T ss_pred             EEEEEeCCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-----CCcEEEEEEec
Confidence            9999999996532            223334567889999999998877666655555555544     13588999999


Q ss_pred             CCCCChh-hHHHHHHH---HhcCCCC--CeEEEEecCCCcChHH
Q 014461          268 DLVTKKK-DLLKVAEQ---FKHLPGY--ERIFMTSGLKGAGLKA  305 (424)
Q Consensus       268 Dl~~~~~-~~~~~~~~---~~~~~~~--~~~~~iSA~~g~gi~~  305 (424)
                      |+..... .+....+.   +....++  .+++++||++|.|+++
T Consensus       144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            9975322 22222222   2233333  2599999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=7e-15  Score=134.31  Aligned_cols=172  Identities=22%  Similarity=0.271  Sum_probs=118.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...+.+|.++|.+|+|||||+|+|+......++..+.++..........++..+.+|||||+.+...    .+ .+....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~----~D-~~~r~~  110 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD----KD-AEHRQL  110 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchh----hh-HHHHHH
Confidence            4567899999999999999999999877776666665555544444556778899999999986532    11 122334


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---------------hhHHHHH
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---------------KDLLKVA  280 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---------------~~~~~~~  280 (424)
                      ....+...|++++++|+.++.-..+..+..-+.....    +.++++++|.+|...+-               +.+....
T Consensus       111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~  186 (296)
T COG3596         111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA  186 (296)
T ss_pred             HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence            4556777899999999987665555544443333221    36899999999986541               1111222


Q ss_pred             HHHhcC-CCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          281 EQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       281 ~~~~~~-~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +.+.+. ....+++.+|+..+.|+++|..++...++.
T Consensus       187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            222111 123468888999999999999999999874

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2e-15  Score=124.25  Aligned_cols=158  Identities=16%  Similarity=0.212  Sum_probs=109.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee--eEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT--HEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~--~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      -++|+++|..|+|||.|+.++..+-++   +..+.|.  +-....+.  .+..++.+|||.|...+++            
T Consensus         7 lfkivlvgnagvgktclvrrftqglfp---pgqgatigvdfmiktvev~gekiklqiwdtagqerfrs------------   71 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS------------   71 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCC---CCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH------------
Confidence            478999999999999999999876554   2222222  22222233  3445688999999875421            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      -+.++++.++++++|+|.+-..  ...-+-+||.++........-.|+|+||+|+.+.++......++|.+... .-+++
T Consensus        72 itqsyyrsahalilvydiscqp--sfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qd-myfle  148 (213)
T KOG0095|consen   72 ITQSYYRSAHALILVYDISCQP--SFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQD-MYFLE  148 (213)
T ss_pred             HHHHHhhhcceEEEEEecccCc--chhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhh-hhhhh
Confidence            2234567789999999997432  22334466666554444445678999999998876666777777776532 23789


Q ss_pred             EecCCCcChHHHHHHHHHhc
Q 014461          295 TSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +||+...|++.||..+.-.+
T Consensus       149 tsakea~nve~lf~~~a~rl  168 (213)
T KOG0095|consen  149 TSAKEADNVEKLFLDLACRL  168 (213)
T ss_pred             hcccchhhHHHHHHHHHHHH
Confidence            99999999999998887655

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.64  E-value=5.4e-15  Score=150.53  Aligned_cols=154  Identities=17%  Similarity=0.241  Sum_probs=102.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeec--------------------------------CCCCceeeEEEEEEe
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--------------------------------RKTNTTTHEVLGVMT  183 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~--------------------------------~~~~tt~~~~~~~~~  183 (424)
                      ....++|+++|++++|||||+++|+...-....                                ...+.|.+.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            355799999999999999999999853211100                                011344555555566


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      .++.++.|+||||+..+            .......+..+|++++|+|+..+...........+..++     ..|+++|
T Consensus       104 ~~~~~i~~iDTPGh~~f------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvv  166 (474)
T PRK05124        104 TEKRKFIIADTPGHEQY------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVA  166 (474)
T ss_pred             cCCcEEEEEECCCcHHH------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEE
Confidence            77889999999995421            223344467899999999998776655544444555443     1468999


Q ss_pred             EecCCCCCChh-hHHHHHHHH---hcCCC---CCeEEEEecCCCcChHHH
Q 014461          264 MNKVDLVTKKK-DLLKVAEQF---KHLPG---YERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       264 ~NK~Dl~~~~~-~~~~~~~~~---~~~~~---~~~~~~iSA~~g~gi~~L  306 (424)
                      +||+|+..... .+.+..+.+   ....+   ..+++++||++|.|++++
T Consensus       167 vNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        167 VNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             EEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            99999975322 233333333   22222   346999999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.64  E-value=3.1e-15  Score=158.17  Aligned_cols=153  Identities=17%  Similarity=0.251  Sum_probs=102.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeec----------CCC----------------------CceeeEEEEEEe
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS----------RKT----------------------NTTTHEVLGVMT  183 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~----------~~~----------------------~tt~~~~~~~~~  183 (424)
                      ....++|+++|++|+|||||+++|+........          ...                      +.|.+.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            345678999999999999999999864322111          112                      344445455566


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      ..+.++.|+||||+..+            .......+..+|++++|+|+..+..........++..++     ..|+++|
T Consensus       101 ~~~~~~~liDtPG~~~f------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~-----~~~iivv  163 (632)
T PRK05506        101 TPKRKFIVADTPGHEQY------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLG-----IRHVVLA  163 (632)
T ss_pred             cCCceEEEEECCChHHH------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhC-----CCeEEEE
Confidence            77889999999996432            222334567889999999998776665555555555543     2468899


Q ss_pred             EecCCCCCCh-hhHHHHHHHH---hcCCCC--CeEEEEecCCCcChHH
Q 014461          264 MNKVDLVTKK-KDLLKVAEQF---KHLPGY--ERIFMTSGLKGAGLKA  305 (424)
Q Consensus       264 ~NK~Dl~~~~-~~~~~~~~~~---~~~~~~--~~~~~iSA~~g~gi~~  305 (424)
                      +||+|+.... ..+.....++   ....++  .+++++||++|.|+++
T Consensus       164 vNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        164 VNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             EEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            9999997522 2222232232   233344  3599999999999984

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.63  E-value=1.6e-15  Score=144.08  Aligned_cols=155  Identities=17%  Similarity=0.253  Sum_probs=101.6

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcce-----eecC------------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVA-----AVSR------------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~-----~~~~------------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~  203 (424)
                      +|+++|++|+|||||+|+|++....     .+..            ..+.+.......+.+.+.++.+|||||..++   
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f---   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF---   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence            4899999999999999999753211     1111            0122223333446667889999999997532   


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHH
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF  283 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~  283 (424)
                               ...+...+..+|++++|+|++.+.......+...+...      +.|.++|+||+|+...  ........+
T Consensus        78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~------~~p~iivvNK~D~~~~--~~~~~~~~l  140 (268)
T cd04170          78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA------GIPRIIFINKMDRERA--DFDKTLAAL  140 (268)
T ss_pred             ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECCccCCC--CHHHHHHHH
Confidence                     22333456678999999999876544434444444433      3789999999998764  344455555


Q ss_pred             hcCCCCC-eEEEEecCCCcChHHHHHHHHHhcc
Q 014461          284 KHLPGYE-RIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       284 ~~~~~~~-~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +...+.. -.+.++..+|.|+..+.+.+...+.
T Consensus       141 ~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~  173 (268)
T cd04170         141 QEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAY  173 (268)
T ss_pred             HHHhCCCeEEEEecccCCCceeEEEEcccCEEE
Confidence            5544433 1244567889999888888876654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01856 YlqF YlqF

Probab=99.63  E-value=2.2e-15  Score=133.34  Aligned_cols=152  Identities=24%  Similarity=0.352  Sum_probs=109.8

Q ss_pred             hHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-----------------CCCCCCCCccChhhHHHHHHhcCCeE
Q 014461           25 LFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-----------------DPQNNNAAKKQEPTWDEKYRERTDRI   87 (424)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-----------------~~k~Dl~~~~~~~~~~~~~~~~~~~i   87 (424)
                      ||-+||.++.++...  .+..+|+++.+.|++.|...                 .||+|+.+.+....|..++...+..+
T Consensus         1 ~~~~~~~~~~~~~~~--~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~v   78 (171)
T cd01856           1 WFPGHMAKALRQIKE--KLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKV   78 (171)
T ss_pred             CCchHHHHHHHHHHH--HHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeE
Confidence            567899999998877  77889999999999876543                 22669976655567888888877778


Q ss_pred             EEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCccee
Q 014461           88 VFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA  166 (424)
Q Consensus        88 ~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~  166 (424)
                      ++.++ ++.|...+.          ..    +...+......  ..........+++++|.+|+|||||+|+|.+.....
T Consensus        79 i~iSa~~~~gi~~L~----------~~----l~~~l~~~~~~--~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~  142 (171)
T cd01856          79 LFVNAKSGKGVKKLL----------KA----AKKLLKDIEKL--KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK  142 (171)
T ss_pred             EEEECCCcccHHHHH----------HH----HHHHHHHHhhh--hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence            88888 777877661          11    11111110000  011223345789999999999999999999988877


Q ss_pred             ecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461          167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGL  197 (424)
Q Consensus       167 ~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~  197 (424)
                      ++..+++|+......+.   ..+.++||||+
T Consensus       143 ~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         143 VGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            88888998876654332   56899999997

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.63  E-value=4.2e-15  Score=134.59  Aligned_cols=161  Identities=18%  Similarity=0.270  Sum_probs=100.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeec----CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ++|+++|.+|+|||||+|+|++......+    ....+|..... ........+.+|||||+.....  .   ....++.
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~~--~---~~~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTAF--P---PDDYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCcccC--C---HHHHHHH
Confidence            67999999999999999999985432111    11122222111 1112235789999999875321  1   1111211


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-----------h-HHHHHHHH
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----------D-LLKVAEQF  283 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-----------~-~~~~~~~~  283 (424)
                        ..+..+|++++|.|.  +++..+..+.+.+...+      .|+++|+||+|+.....           . +....+.+
T Consensus        76 --~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~------~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~  145 (197)
T cd04104          76 --MKFSEYDFFIIISST--RFSSNDVKLAKAIQCMG------KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC  145 (197)
T ss_pred             --hCccCcCEEEEEeCC--CCCHHHHHHHHHHHHhC------CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence              225678998888553  55666667777777653      67999999999853211           1 11222222


Q ss_pred             hcC-----CCCCeEEEEecC--CCcChHHHHHHHHHhccC
Q 014461          284 KHL-----PGYERIFMTSGL--KGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       284 ~~~-----~~~~~~~~iSA~--~g~gi~~L~~~i~~~l~~  316 (424)
                      ...     ...+.+|.+|+.  .+.|+..|.+.+...+++
T Consensus       146 ~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         146 LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            211     234579999998  689999999999998864

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.62  E-value=6.4e-15  Score=132.55  Aligned_cols=161  Identities=14%  Similarity=0.120  Sum_probs=112.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE--ecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM--TKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +..+|+++|.+|||||+|+.++++..+.  ..+.+|.-+.....+  ......+.++||+|..++.         . ++.
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~---------~-~~~   69 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS---------A-MRD   69 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCCcccCh---------H-HHH
Confidence            4578999999999999999999988875  334444333333333  3334567899999955432         1 111


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ..+..+|+.++|+++++..+..  .+..+.+.+. .......|+++|+||+|+...+....+..+.+...++.. +++
T Consensus        70 --~~~~~~~gF~lVysitd~~SF~--~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E  144 (196)
T KOG0395|consen   70 --LYIRNGDGFLLVYSITDRSSFE--EAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIE  144 (196)
T ss_pred             --HhhccCcEEEEEEECCCHHHHH--HHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEE
Confidence              2356679999999998754333  2333333331 112234799999999999886666666677777777777 999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||+...+++++|..|...+.
T Consensus       145 ~Sak~~~~v~~~F~~L~r~~~  165 (196)
T KOG0395|consen  145 TSAKLNYNVDEVFYELVREIR  165 (196)
T ss_pred             eeccCCcCHHHHHHHHHHHHH
Confidence            999999999999999988664

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.62  E-value=1.4e-14  Score=121.49  Aligned_cols=158  Identities=18%  Similarity=0.292  Sum_probs=107.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.++|.++|..|+||||++++|.+.....+++..+..    ...+...+.++.+||..|...             ++.+|
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~----Iktl~~~~~~L~iwDvGGq~~-------------lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQ----IKTLEYKGYTLNIWDVGGQKT-------------LRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCcccee----eEEEEecceEEEEEEcCCcch-------------hHHHH
Confidence            3789999999999999999999998765555544433    333557889999999999753             33334


Q ss_pred             h-hcccccEEEEEEeCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEEecCCCCCC--hhhHHH--HHHHHhcCCCCC
Q 014461          218 S-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLK--VAEQFKHLPGYE  290 (424)
Q Consensus       218 ~-~~~~aD~vl~VvD~~~~~~~~~~--~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~--~~~~~~--~~~~~~~~~~~~  290 (424)
                      . ++..+|++|||+|.++.....+.  .+.+.+.+-..   -+.|++++.||.|+...  ...+..  -++.+.+.... 
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerl---aG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~-  153 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERL---AGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW-  153 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhh---cCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc-
Confidence            3 45778999999999765433222  23333332222   23789999999999843  112221  12233222222 


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++.|||.+|+++.+-++||...+..
T Consensus       154 ~l~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  154 RLVKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             eEEEEeccccccHHHHHHHHHHHHHH
Confidence            58999999999999999999887643

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.62  E-value=5.2e-15  Score=137.16  Aligned_cols=223  Identities=20%  Similarity=0.261  Sum_probs=141.0

Q ss_pred             CCCCccChhhHHHHHHhcCCeEEEeeccccccchhhhHHHHHHHH-HHH--HHHHHHHHHHhhHHHH-HHhhhhcccceE
Q 014461           66 NNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKH-RAL--AKALLQAALERQEEEE-EEVKEEDQKSVA  141 (424)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~-~~~~~~~~~~~~  141 (424)
                      +++-.+....|...++..|..+  .   +.|-+.+      +.+. +.+  ...-+...|++.+... .+..........
T Consensus       112 py~~~rl~r~~~hl~r~~g~~v--~---gsges~i------d~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pv  180 (410)
T KOG0410|consen  112 PYVGGRLERELQHLRRQSGGQV--K---GSGESII------DRDIRRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPV  180 (410)
T ss_pred             ccccchHHHHHHHHHhcCCCcc--c---CccchHh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCce
Confidence            5566777888888888777652  1   2222222      1111 111  1223333444433222 223344556788


Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      |++||++|+|||||+++|++.... ..+....|.+++... --..+..+.+.||-||...   ++... ...++.+++.+
T Consensus       181 iavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd---LP~~L-vaAF~ATLeeV  255 (410)
T KOG0410|consen  181 IAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD---LPIQL-VAAFQATLEEV  255 (410)
T ss_pred             EEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhh---CcHHH-HHHHHHHHHHH
Confidence            999999999999999999964432 233333444433322 2356778999999999865   45444 46789999999


Q ss_pred             ccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCC-CcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          221 NLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPK-QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~-~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      ..+|++++|+|++.+.-+. .+.++..+..++....+. ..++=|-||+|..+.....+          .. ..+.+||+
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n-~~v~isal  324 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN-LDVGISAL  324 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----------cC-Cccccccc
Confidence            9999999999998764433 346777777776432221 23566889999866421110          11 16889999


Q ss_pred             CCcChHHHHHHHHHhcc
Q 014461          299 KGAGLKALTQYLMEQAV  315 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~  315 (424)
                      +|.|++++++.+-....
T Consensus       325 tgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  325 TGDGLEELLKAEETKVA  341 (410)
T ss_pred             cCccHHHHHHHHHHHhh
Confidence            99999999999877663

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.62  E-value=1e-14  Score=151.59  Aligned_cols=156  Identities=21%  Similarity=0.293  Sum_probs=96.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEec------------------CCccEEEEeCCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTK------------------ADTQICIFDTPGL  197 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~------------------~~~~i~l~DtpG~  197 (424)
                      .+++.|+++|++|+|||||+|+|.+..+.  ...+ +.|.+.-......                  .-..+.||||||+
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            46778999999999999999999876543  2222 2222211000000                  0013789999998


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---  274 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---  274 (424)
                      ..+.         .+..   ..+..+|++++|+|++++...........+...      +.|+++++||+|+.....   
T Consensus        82 e~f~---------~~~~---~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~------~vpiIvviNK~D~~~~~~~~~  143 (586)
T PRK04004         82 EAFT---------NLRK---RGGALADIAILVVDINEGFQPQTIEAINILKRR------KTPFVVAANKIDRIPGWKSTE  143 (586)
T ss_pred             HHHH---------HHHH---HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc------CCCEEEEEECcCCchhhhhhc
Confidence            6441         1111   235678999999999876555444444444432      478999999999852100   


Q ss_pred             -----------------hH----HHHHHHHh-------------cCCCCCeEEEEecCCCcChHHHHHHHHH
Q 014461          275 -----------------DL----LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       275 -----------------~~----~~~~~~~~-------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~  312 (424)
                                       .+    .+....+.             +..+..+++++||++|.|+++|++.+..
T Consensus       144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                             00    01111122             1123346999999999999999988754

>PLN03126 Elongation factor Tu; Provisional

Probab=99.62  E-value=1.2e-14  Score=147.55  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=99.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      .....+|+++|++++|||||+++|++....               ......+.|.+.....+...+.++.++||||+..+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            345789999999999999999999852111               11223456666555556667889999999997542


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---  276 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~---  276 (424)
                                  +......+..+|++++|+|+..+...........+...+      .| +++++||+|+.......   
T Consensus       158 ------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~i  219 (478)
T PLN03126        158 ------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG------VPNMVVFLNKQDQVDDEELLELV  219 (478)
T ss_pred             ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEecccccCHHHHHHHH
Confidence                        344455667889999999998776655555555555543      56 77899999998642211   


Q ss_pred             HHHHHHHhcCCC----CCeEEEEecCCCcC
Q 014461          277 LKVAEQFKHLPG----YERIFMTSGLKGAG  302 (424)
Q Consensus       277 ~~~~~~~~~~~~----~~~~~~iSA~~g~g  302 (424)
                      .+.+..+....+    ..+++++||.+|.+
T Consensus       220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        220 ELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence            112222322222    23689999998854

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=2.1e-15  Score=160.90  Aligned_cols=143  Identities=18%  Similarity=0.198  Sum_probs=99.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcc-----eeecC------------CCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSR------------KTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~-----~~~~~------------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      +..+|+++|++|+|||||+|+|+....     ..+.+            ..++|.......+.+.+.++.+|||||+..+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            457899999999999999999974211     11111            2466776666677788999999999998753


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA  280 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~  280 (424)
                      .            ..+...+..+|++++|+|+.++.......+...+...      +.|+++|+||+|+...  ......
T Consensus        89 ~------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~p~ivviNK~D~~~~--~~~~~~  148 (689)
T TIGR00484        89 T------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY------EVPRIAFVNKMDKTGA--NFLRVV  148 (689)
T ss_pred             h------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc------CCCEEEEEECCCCCCC--CHHHHH
Confidence            1            1233456678999999999877666555555555443      3789999999999863  233334


Q ss_pred             HHHhcCC---CCCeEEEEecCCC
Q 014461          281 EQFKHLP---GYERIFMTSGLKG  300 (424)
Q Consensus       281 ~~~~~~~---~~~~~~~iSA~~g  300 (424)
                      +.+....   .+..++|+||..+
T Consensus       149 ~~i~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       149 NQIKQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHHHHhCCCceeEEeccccCCC
Confidence            4444333   3345899999866

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=99.61  E-value=1.1e-16  Score=151.24  Aligned_cols=135  Identities=25%  Similarity=0.291  Sum_probs=107.3

Q ss_pred             CCCCCcEEEEeCCCCccCCC-CC--------------------CCCCCCccChhhHHHHHHhcCCeEEEeec--cccccc
Q 014461           42 TENDCDSVFDSSYFRIPTID-DP--------------------QNNNAAKKQEPTWDEKYRERTDRIVFGEE--AQKGKL   98 (424)
Q Consensus        42 ~~~~~d~vie~~dar~p~~~-~~--------------------k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~--~~~~~~   98 (424)
                      .+..+|+||.|.|||.|..+ +.                    |+||++....+.|...+.+..+++.|..+  ..-|+.
T Consensus       210 ViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKg  289 (572)
T KOG2423|consen  210 VIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKG  289 (572)
T ss_pred             hhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchh
Confidence            45578999999999999998 65                    66999999999999999999999999888  566777


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE
Q 014461           99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV  178 (424)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~  178 (424)
                      .+          ..+.+++-+..             ...+.+-|+|+|+||+||||+||+|...+++.+.+.+|.|..-+
T Consensus       290 al----------I~llRQf~kLh-------------~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ  346 (572)
T KOG2423|consen  290 AL----------IQLLRQFAKLH-------------SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ  346 (572)
T ss_pred             HH----------HHHHHHHHhhc-------------cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH
Confidence            66          33433333332             23456889999999999999999999999999999999876432


Q ss_pred             EEEEecCCccEEEEeCCCcccCCC
Q 014461          179 LGVMTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       179 ~~~~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      ..   .--..|+|||+||+.-+..
T Consensus       347 YI---tLmkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  347 YI---TLMKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             HH---HHHhceeEecCCCccCCCC
Confidence            11   1234689999999986643

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1.1e-14  Score=143.19  Aligned_cols=162  Identities=17%  Similarity=0.214  Sum_probs=111.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc--------------eeecCCCCceeeEEEEEEecCC---ccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV--------------AAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~--------------~~~~~~~~tt~~~~~~~~~~~~---~~i~l~DtpG~~~  199 (424)
                      .+..+++|+.+-..|||||..+|+...-              -.+....|.|.......+.+.+   +.+++|||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3567899999999999999999874111              1233344566555555444444   7799999999987


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV  279 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~  279 (424)
                      +..         .+.+   .+..||++|+|+|++++...+.......--+.      +..+|.|+||+|+...  +.+..
T Consensus       138 Fs~---------EVsR---slaac~G~lLvVDA~qGvqAQT~anf~lAfe~------~L~iIpVlNKIDlp~a--dpe~V  197 (650)
T KOG0462|consen  138 FSG---------EVSR---SLAACDGALLVVDASQGVQAQTVANFYLAFEA------GLAIIPVLNKIDLPSA--DPERV  197 (650)
T ss_pred             ccc---------eehe---hhhhcCceEEEEEcCcCchHHHHHHHHHHHHc------CCeEEEeeeccCCCCC--CHHHH
Confidence            743         2333   34568999999999987665443222111122      3568999999999874  33344


Q ss_pred             HHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          280 AEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       280 ~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ..++.+.+..  .+++.+|||+|.|+++++++|++.+|+..
T Consensus       198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence            4444443333  26899999999999999999999997543

>PRK12739 elongation factor G; Reviewed

Probab=99.60  E-value=1e-14  Score=155.61  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=86.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC-----cceeec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      +..+|+++|++|+|||||+++|+..     ....+.            ...++|.+.....+.+++.++.++||||+.++
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f   86 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF   86 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence            4678999999999999999999742     111122            24466776666667788999999999997542


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                                  ...+...+..+|++++|+|+..+....+..+...+...      +.|+++++||+|+...
T Consensus        87 ------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~------~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         87 ------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY------GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             ------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCC
Confidence                        22345567778999999999887766666666665554      3789999999999753

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.59  E-value=1.8e-14  Score=147.96  Aligned_cols=117  Identities=17%  Similarity=0.257  Sum_probs=78.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC--Ccc---eeec----------CC------CCceeeEEEEEEecCCccEEEEeCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVS----------RK------TNTTTHEVLGVMTKADTQICIFDTP  195 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~--~~~---~~~~----------~~------~~tt~~~~~~~~~~~~~~i~l~Dtp  195 (424)
                      .+..+|+++|++|+|||||+++|+.  +..   ..+.          +.      .+.+.......+.+.+..+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3567899999999999999999963  111   1111          10      0122222233466778899999999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      |+.++            ...++..+..+|++++|+|++++.......+.......      +.|+++++||+|+..
T Consensus        88 G~~df------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~------~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDF------------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR------DTPIFTFINKLDRDG  145 (526)
T ss_pred             Cchhh------------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc------CCCEEEEEECCcccc
Confidence            98643            12334456778999999999876644433444443332      478999999999865

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.59  E-value=2.9e-14  Score=130.79  Aligned_cols=112  Identities=20%  Similarity=0.249  Sum_probs=72.3

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCC---------------CCceeeEE--EEEEec--------CCccEEEEeCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRK---------------TNTTTHEV--LGVMTK--------ADTQICIFDTP  195 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~---------------~~tt~~~~--~~~~~~--------~~~~i~l~Dtp  195 (424)
                      +|+++|+.++|||||+++|+..........               .+.|....  ...+..        .+..+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            699999999999999999975321100000               11221111  111221        25678999999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      |+..+            ...+...+..+|++++|+|+..+.......+.......      +.|+++|+||+|+.
T Consensus        82 G~~~f------------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~------~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDF------------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE------RVKPVLVINKIDRL  138 (222)
T ss_pred             Ccccc------------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCcc
Confidence            98754            22344556788999999999877655444444433322      36899999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04167 Snu114p Snu114p subfamily

Probab=99.58  E-value=1.5e-14  Score=132.59  Aligned_cols=157  Identities=19%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceee------------cC------CCCceeeEEEEEEe-----cCCccEEEEeCCCc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------SR------KTNTTTHEVLGVMT-----KADTQICIFDTPGL  197 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~------------~~------~~~tt~~~~~~~~~-----~~~~~i~l~DtpG~  197 (424)
                      +|+++|++|+|||||+++|++......            .+      ..+.|.......+.     .....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999986432211            00      01122111111111     22357899999998


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----  272 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-----  272 (424)
                      ..+            .......+..+|++++|+|++++.......+...+..      .+.|+++|+||+|+...     
T Consensus        82 ~~f------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~------~~~p~iiviNK~D~~~~~~~l~  143 (213)
T cd04167          82 VNF------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL------EGLPIVLVINKIDRLILELKLP  143 (213)
T ss_pred             cch------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCcccccCC
Confidence            643            1223345667899999999986554332222222221      13789999999998621     


Q ss_pred             -h---hhHHHHHHH---HhcCCC----------CCeEEEEecCCCcChH--------HHHHHHHHhcc
Q 014461          273 -K---KDLLKVAEQ---FKHLPG----------YERIFMTSGLKGAGLK--------ALTQYLMEQAV  315 (424)
Q Consensus       273 -~---~~~~~~~~~---~~~~~~----------~~~~~~iSA~~g~gi~--------~L~~~i~~~l~  315 (424)
                       .   ..+.+..+.   +....+          ..++++.||+.|.+++        +|++.|.+.++
T Consensus       144 ~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~  211 (213)
T cd04167         144 PNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP  211 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence             1   111112111   111111          1247788999998876        66666665543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=9.4e-15  Score=155.73  Aligned_cols=150  Identities=21%  Similarity=0.270  Sum_probs=106.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC---C--cceeec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG---T--KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~---~--~~~~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      +..+|+++|++|+|||||+|+|+.   .  ....+.            ...++|.+.....+.+.+.++.++||||+.++
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            457999999999999999999973   1  111122            24467777766667788999999999997542


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA  280 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~  280 (424)
                                  .......+..+|++++|+|+..+....+..+...+...+      .|.++++||+|+...  ......
T Consensus        89 ------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~------~p~iv~vNK~D~~~~--~~~~~~  148 (693)
T PRK00007         89 ------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK------VPRIAFVNKMDRTGA--DFYRVV  148 (693)
T ss_pred             ------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC------CCEEEEEECCCCCCC--CHHHHH
Confidence                        123445567789999999998887777777777666653      789999999999863  344445


Q ss_pred             HHHhcCCCC---CeEEEEecCCC-cChHHHH
Q 014461          281 EQFKHLPGY---ERIFMTSGLKG-AGLKALT  307 (424)
Q Consensus       281 ~~~~~~~~~---~~~~~iSA~~g-~gi~~L~  307 (424)
                      +.+.+..++   ...+|+||..| .|+-+++
T Consensus       149 ~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~  179 (693)
T PRK00007        149 EQIKDRLGANPVPIQLPIGAEDDFKGVVDLV  179 (693)
T ss_pred             HHHHHHhCCCeeeEEecCccCCcceEEEEcc
Confidence            555444443   45789999877 4444444

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=4.1e-14  Score=140.41  Aligned_cols=157  Identities=19%  Similarity=0.239  Sum_probs=113.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec---CCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      .+++-|+++|+-..|||||+..+.+..+. .....+.|.+.-.+.+..   ....+.|+||||+..+..          +
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~----------m   71 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA----------M   71 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHH----------H
Confidence            35778999999999999999999988876 345556676665444444   346899999999865421          1


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC-------
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL-------  286 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-------  286 (424)
                       ++ ....-+|++++|+|+.++...+..+....++..      +.|+++++||+|+.+.  +......++.+.       
T Consensus        72 -Ra-RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a------~vP~iVAiNKiDk~~~--np~~v~~el~~~gl~~E~~  141 (509)
T COG0532          72 -RA-RGASVTDIAILVVAADDGVMPQTIEAINHAKAA------GVPIVVAINKIDKPEA--NPDKVKQELQEYGLVPEEW  141 (509)
T ss_pred             -Hh-cCCccccEEEEEEEccCCcchhHHHHHHHHHHC------CCCEEEEEecccCCCC--CHHHHHHHHHHcCCCHhhc
Confidence             11 234668999999999988877665555555554      4899999999999864  333333333322       


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+...++++||++|+|+++|++.|.-..
T Consensus       142 gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         142 GGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             CCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence            2334689999999999999999886543

>cd01858 NGP_1 NGP-1

Probab=99.58  E-value=2.1e-14  Score=125.17  Aligned_cols=128  Identities=26%  Similarity=0.282  Sum_probs=90.3

Q ss_pred             CCCcEEEEeCCCCccCCC---------------------CCCCCCCCccChhhHHHHHHhcCCeE-EEeec-cccccchh
Q 014461           44 NDCDSVFDSSYFRIPTID---------------------DPQNNNAAKKQEPTWDEKYRERTDRI-VFGEE-AQKGKLRI  100 (424)
Q Consensus        44 ~~~d~vie~~dar~p~~~---------------------~~k~Dl~~~~~~~~~~~~~~~~~~~i-~f~~~-~~~~~~~l  100 (424)
                      ..+|+++.+.|++.|...                     .||+|+.+++....|..+|.+..... +..++ ++.|...+
T Consensus         7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L   86 (157)
T cd01858           7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSL   86 (157)
T ss_pred             hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHH
Confidence            468888888888877543                     33679988777788999998765443 44555 56666655


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE
Q 014461          101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG  180 (424)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~  180 (424)
                                ..    .+...++.         ....+..+|+++|.||||||||+|+|.+.....++..+++|+.....
T Consensus        87 ----------~~----~l~~~~~~---------~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~  143 (157)
T cd01858          87 ----------IQ----LLRQFSKL---------HSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI  143 (157)
T ss_pred             ----------HH----HHHHHHhh---------hccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE
Confidence                      11    11111110         01124578999999999999999999999988899999999876542


Q ss_pred             EEecCCccEEEEeCCCc
Q 014461          181 VMTKADTQICIFDTPGL  197 (424)
Q Consensus       181 ~~~~~~~~i~l~DtpG~  197 (424)
                      .   .+..+.++||||+
T Consensus       144 ~---~~~~~~liDtPGi  157 (157)
T cd01858         144 T---LMKRIYLIDCPGV  157 (157)
T ss_pred             E---cCCCEEEEECcCC
Confidence            2   2345899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.58  E-value=2.9e-14  Score=144.13  Aligned_cols=151  Identities=18%  Similarity=0.255  Sum_probs=99.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--ce----------------------------eecCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~----------------------------~~~~~~~tt~~~~~~~~~~~~  186 (424)
                      ....+|+++|+.++|||||+.+|+..-  ..                            ......+.|.+.....+..++
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            356889999999999999999987410  00                            011123456665555567778


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      ..+.|+||||+.++            +......+..+|++++|+|++.+..       ......+.++..++      .|
T Consensus        85 ~~i~lIDtPGh~~f------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g------i~  146 (446)
T PTZ00141         85 YYFTIIDAPGHRDF------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG------VK  146 (446)
T ss_pred             eEEEEEECCChHHH------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC------CC
Confidence            89999999997532            4444556778999999999987642       23334445555544      44


Q ss_pred             -EEEEEecCCCCC---ChhhHHHHHHHHh---cCCCC----CeEEEEecCCCcChHH
Q 014461          260 -RVLCMNKVDLVT---KKKDLLKVAEQFK---HLPGY----ERIFMTSGLKGAGLKA  305 (424)
Q Consensus       260 -~ilV~NK~Dl~~---~~~~~~~~~~~~~---~~~~~----~~~~~iSA~~g~gi~~  305 (424)
                       +|+++||+|...   .++.+.+..+++.   ...++    .+++++||.+|.|+.+
T Consensus       147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             678999999532   1223333333332   22233    3689999999999864

>cd04169 RF3 RF3 subfamily

Probab=99.57  E-value=2.8e-14  Score=134.86  Aligned_cols=154  Identities=16%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCc-----ceeec----------CC------CCceeeEEEEEEecCCccEEEEeCCCcc
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTK-----VAAVS----------RK------TNTTTHEVLGVMTKADTQICIFDTPGLM  198 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~-----~~~~~----------~~------~~tt~~~~~~~~~~~~~~i~l~DtpG~~  198 (424)
                      .+|+++|++|+|||||+++|+...     ...+.          +.      .+.+.......+.+.+.++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            579999999999999999997421     11111          11      1122223333467788999999999975


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~  278 (424)
                      ++            ...++..+..+|++++|+|++.+.......+.+.....      +.|+++++||+|+....  ...
T Consensus        83 df------------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~------~~P~iivvNK~D~~~a~--~~~  142 (267)
T cd04169          83 DF------------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR------GIPIITFINKLDREGRD--PLE  142 (267)
T ss_pred             HH------------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc------CCCEEEEEECCccCCCC--HHH
Confidence            43            12244556788999999999876544333444333322      47899999999987632  222


Q ss_pred             HHHHHhcCCCC---CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          279 VAEQFKHLPGY---ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       279 ~~~~~~~~~~~---~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .++.+....+.   +-.+|+.  .|.++..+.+.+...+.
T Consensus       143 ~~~~l~~~l~~~~~~~~~Pi~--~~~~~~g~vd~~~~~a~  180 (267)
T cd04169         143 LLDEIEEELGIDCTPLTWPIG--MGKDFKGVYDRRTGEVE  180 (267)
T ss_pred             HHHHHHHHHCCCceeEEeccc--CCCceEEEEEhhhCEEE
Confidence            23333333333   2334443  34555555555555543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.56  E-value=3.3e-14  Score=143.33  Aligned_cols=162  Identities=17%  Similarity=0.277  Sum_probs=102.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEE---------------------------EEe----
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLG---------------------------VMT----  183 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~---------------------------~~~----  183 (424)
                      ....+|+++|+-..|||||+.+|++......  +...+.|.+.-..                           .+.    
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568999999999999999999997432110  0011111110000                           000    


Q ss_pred             --cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcE
Q 014461          184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKR  260 (424)
Q Consensus       184 --~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~  260 (424)
                        .....+.|+||||+..            .++.++..+..+|++++|+|+..+ ........+..+..++     -.|+
T Consensus       112 ~~~~~~~i~~IDtPGH~~------------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg-----i~~i  174 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDI------------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK-----LKHI  174 (460)
T ss_pred             cccccceEeeeeCCCHHH------------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC-----CCcE
Confidence              0023689999999642            255666677889999999999864 2332233333444443     1468


Q ss_pred             EEEEecCCCCCChhhHHHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          261 VLCMNKVDLVTKKKDLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       261 ilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      |+|+||+|+.+. ....+..+++...     ....+++++||++|.|++.|+++|.+.++.
T Consensus       175 IVvlNKiDlv~~-~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        175 IILQNKIDLVKE-AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             EEEEecccccCH-HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            999999999853 2333323333221     123469999999999999999999987754

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.56  E-value=1.3e-15  Score=122.96  Aligned_cols=165  Identities=15%  Similarity=0.153  Sum_probs=108.1

Q ss_pred             EEEecCCCChhHHHHhHhCCcceeecCCCCc-eeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-TTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       143 ~vvG~~~~GKStLin~l~~~~~~~~~~~~~t-t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      +++|.+++|||.|+-++..+.+.. .+...| ..+.....++.+  ..++.+|||.|+..+++            -+..+
T Consensus         1 mllgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs------------vt~ay   67 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS------------VTHAY   67 (192)
T ss_pred             CccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh------------hhHhh
Confidence            368999999999987776544321 111111 111111123333  34678999999876531            12345


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      ++++|++++++|+.+..+.  ..+..|+.++.........+.+++||||+...+..-.+..+.+.+.++.+ ++++||++
T Consensus        68 yrda~allllydiankasf--dn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsakt  144 (192)
T KOG0083|consen   68 YRDADALLLLYDIANKASF--DNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKT  144 (192)
T ss_pred             hcccceeeeeeecccchhH--HHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccc
Confidence            7899999999999765433  33444554443333334668899999999775544445556677777776 99999999


Q ss_pred             CcChHHHHHHHHHhccCCCCCCCC
Q 014461          300 GAGLKALTQYLMEQAVQRPWSEDP  323 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~~~~~~~~~  323 (424)
                      |.|++-.|-.|.+.+.......++
T Consensus       145 g~nvd~af~~ia~~l~k~~~~~~~  168 (192)
T KOG0083|consen  145 GFNVDLAFLAIAEELKKLKMGAPP  168 (192)
T ss_pred             cccHhHHHHHHHHHHHHhccCCCC
Confidence            999999999999888665544443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.56  E-value=2.4e-14  Score=122.47  Aligned_cols=110  Identities=28%  Similarity=0.440  Sum_probs=79.2

Q ss_pred             CCCCcEEEEeCCCCccCCC-C--------------------CCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchh
Q 014461           43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRI  100 (424)
Q Consensus        43 ~~~~d~vie~~dar~p~~~-~--------------------~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l  100 (424)
                      +..+|+++.+.|++.|... +                    ||+|+.+++....|..++...+..+++.++ ++.     
T Consensus         9 i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~-----   83 (141)
T cd01857           9 VERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKEN-----   83 (141)
T ss_pred             HhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-----
Confidence            3468888888898887765 2                    244665554445566666555555555555 221     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE
Q 014461          101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG  180 (424)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~  180 (424)
                                                             .+++++|.+|+|||||+|+|.+.....++..+++|++....
T Consensus        84 ---------------------------------------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~  124 (141)
T cd01857          84 ---------------------------------------ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTI  124 (141)
T ss_pred             ---------------------------------------cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEE
Confidence                                                   16899999999999999999999888888899988886543


Q ss_pred             EEecCCccEEEEeCCCccc
Q 014461          181 VMTKADTQICIFDTPGLML  199 (424)
Q Consensus       181 ~~~~~~~~i~l~DtpG~~~  199 (424)
                      .+   +..+.+|||||+..
T Consensus       125 ~~---~~~~~i~DtpG~~~  140 (141)
T cd01857         125 FL---TPTITLCDCPGLVF  140 (141)
T ss_pred             Ee---CCCEEEEECCCcCC
Confidence            33   23689999999863

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=6.7e-14  Score=114.20  Aligned_cols=161  Identities=18%  Similarity=0.180  Sum_probs=118.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ..++-.++|.-|+|||.|+..+...++.  .+.|+|.-.. -..+  +.....++.+|||.|...++            .
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqerfr------------a   75 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR------------A   75 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHHHHH------------H
Confidence            3577889999999999999999988774  4444432111 1111  23344567899999986541            1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      -+.+.++.+-..++|+|.+++.+  ...+..|+........|+.-+++++||.|+...+....+....|.+..+.. +++
T Consensus        76 vtrsyyrgaagalmvyditrrst--ynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~-fle  152 (215)
T KOG0097|consen   76 VTRSYYRGAAGALMVYDITRRST--YNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLE  152 (215)
T ss_pred             HHHHHhccccceeEEEEehhhhh--hhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEE
Confidence            22345678889999999976432  345667888777766777788999999999887777777788899888886 999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|+|+++.|-.-.+.+.
T Consensus       153 ~saktg~nvedafle~akkiy  173 (215)
T KOG0097|consen  153 ASAKTGQNVEDAFLETAKKIY  173 (215)
T ss_pred             ecccccCcHHHHHHHHHHHHH
Confidence            999999999988765555443

>TIGR00503 prfC peptide chain release factor 3

Probab=99.55  E-value=3.9e-14  Score=145.56  Aligned_cols=162  Identities=17%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC--Ccc---eeec----------C------CCCceeeEEEEEEecCCccEEEEeCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVS----------R------KTNTTTHEVLGVMTKADTQICIFDTP  195 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~--~~~---~~~~----------~------~~~tt~~~~~~~~~~~~~~i~l~Dtp  195 (424)
                      .+..+|+++|++|+|||||+++|+.  +..   ..+.          +      ..+.|.......+.+.+.++.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4578999999999999999999862  111   1111          0      01223333334466788999999999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-hh
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-KK  274 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-~~  274 (424)
                      |+..+            ...++..+..+|++++|+|++.+.......+.+.+...      +.|+++++||+|+... ..
T Consensus        89 G~~df------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~------~~PiivviNKiD~~~~~~~  150 (527)
T TIGR00503        89 GHEDF------------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR------DTPIFTFMNKLDRDIRDPL  150 (527)
T ss_pred             ChhhH------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEEECccccCCCHH
Confidence            98532            23345567789999999999876554444444443331      4789999999998652 23


Q ss_pred             hHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461          275 DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                      .+.+.++.......++..+|+      |...++..+.+.+...++.|+
T Consensus       151 ~ll~~i~~~l~~~~~~~~~PI------g~~~~f~gv~d~l~~~~~~y~  192 (527)
T TIGR00503       151 ELLDEVENELKINCAPITWPI------GCGKLFKGVYHLLKDETYLYQ  192 (527)
T ss_pred             HHHHHHHHHhCCCCccEEEEe------cCCCceeEEEEcccCcceecC
Confidence            344444555445555667888      334556666666666665553

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.55  E-value=6.5e-14  Score=121.80  Aligned_cols=127  Identities=24%  Similarity=0.226  Sum_probs=87.1

Q ss_pred             CCCCccCCC-CCCCCCCCccChhhHHHHHHhc-CCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014461           53 SYFRIPTID-DPQNNNAAKKQEPTWDEKYRER-TDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEE  129 (424)
Q Consensus        53 ~dar~p~~~-~~k~Dl~~~~~~~~~~~~~~~~-~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  129 (424)
                      .....|.+. .||+|+++++....|..++... +..+++.++ ++.|...+.          ......+....+.   . 
T Consensus        26 ~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~----------~~i~~~~~~~~~~---~-   91 (155)
T cd01849          26 KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE----------SAFTKQTNSNLKS---Y-   91 (155)
T ss_pred             hcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH----------HHHHHHhHHHHHH---H-
Confidence            344566666 7799998877677888777654 455788888 888877772          1111111111110   0 


Q ss_pred             HHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461          130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL  197 (424)
Q Consensus       130 ~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~  197 (424)
                       ..........+++++|.||+|||||+|+|.+.....++..+++|+......+   +..+.++||||+
T Consensus        92 -~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~  155 (155)
T cd01849          92 -AKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI  155 (155)
T ss_pred             -HhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence             0111134578899999999999999999999887778889999998765433   356899999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.54  E-value=1.5e-13  Score=135.05  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=72.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-----------------CccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------------~~~i~l~DtpG~~~  199 (424)
                      ....+|+++|.||||||||+|+|++... .++++|+||+++..+.+...                 ..++.++||||+..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            5678999999999999999999988775 68999999999888876654                 33599999999985


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      ....     ...+....+..++.+|++++|+|+.
T Consensus        98 ga~~-----g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASE-----GEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcc-----hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            4321     1233456677789999999999984

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.6e-13  Score=135.23  Aligned_cols=159  Identities=21%  Similarity=0.274  Sum_probs=113.7

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..++++-|.++|+-..|||||+.+|.+..++. +...|.|.+.--.. -...|..++|+||||+..+.         .| 
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~---------aM-  217 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS---------AM-  217 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCcHHHHH---------HH-
Confidence            34578899999999999999999999988874 44455665542222 22367889999999975431         11 


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-------C
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-------L  286 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-------~  286 (424)
                       ++ .....+|++++|+.+.++...+..+..+..+..      +.|+|+++||||.+.  ....+..+++..       .
T Consensus       218 -Ra-RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A------~VpiVvAinKiDkp~--a~pekv~~eL~~~gi~~E~~  287 (683)
T KOG1145|consen  218 -RA-RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA------NVPIVVAINKIDKPG--ANPEKVKRELLSQGIVVEDL  287 (683)
T ss_pred             -Hh-ccCccccEEEEEEEccCCccHhHHHHHHHHHhc------CCCEEEEEeccCCCC--CCHHHHHHHHHHcCccHHHc
Confidence             11 235667999999999887766544443333332      489999999999876  445555555443       3


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .|...++++||++|.|++.|-+.+.-.+
T Consensus       288 GGdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  288 GGDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             CCceeEEEeecccCCChHHHHHHHHHHH
Confidence            3455799999999999999999886543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.54  E-value=1.1e-13  Score=113.91  Aligned_cols=157  Identities=16%  Similarity=0.189  Sum_probs=104.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ...+.++|-.|+|||||+|.+..+.+.   .....|.......++.+...+.+||.||+..++         .+.++   
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr---------smWer---   84 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWER---   84 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccHH---------HHHHH---
Confidence            467999999999999999998765542   223334443444466777889999999986542         22322   


Q ss_pred             hcccccEEEEEEeCCCCCC--CchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC--C-CCeEE
Q 014461          219 AVNLFEVLMVVFDVHRHLT--SPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP--G-YERIF  293 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~--~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~  293 (424)
                      +.+.+++++||+|++++-.  ....++.++|..   +...++|+++.+||.|+.+.- .-.+..+++.-..  . -..+|
T Consensus        85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k---~~l~gip~LVLGnK~d~~~AL-~~~~li~rmgL~sitdREvcC~  160 (186)
T KOG0075|consen   85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDK---PSLTGIPLLVLGNKIDLPGAL-SKIALIERMGLSSITDREVCCF  160 (186)
T ss_pred             HhhcCcEEEEEeecCCcccchhhHHHHHHHhcc---hhhcCCcEEEecccccCcccc-cHHHHHHHhCccccccceEEEE
Confidence            3577899999999986322  222234444432   333468999999999998752 1222333332111  1 11479


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+|++...|++.+.+||.++-
T Consensus       161 siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  161 SISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             EEEEcCCccHHHHHHHHHHHh
Confidence            999999999999999999864

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.54  E-value=1.8e-13  Score=125.74  Aligned_cols=163  Identities=18%  Similarity=0.255  Sum_probs=103.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .++|+++|.+|||||||+++|.+..+.................... ...++.+|||+|+...             +..+
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------------~~~~   71 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------------RSLR   71 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------------HHHH
Confidence            4899999999999999999999887753332221111111111111 1456899999998643             1122


Q ss_pred             -hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHH------------HHh
Q 014461          218 -SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE------------QFK  284 (424)
Q Consensus       218 -~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~------------~~~  284 (424)
                       .....++++++|+|.+.. .........|...+........|+++|+||+|+............            ...
T Consensus        72 ~~y~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (219)
T COG1100          72 PEYYRGANGILIVYDSTLR-ESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA  150 (219)
T ss_pred             HHHhcCCCEEEEEEecccc-hhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence             345788999999998642 223334445554444333335899999999999875322111111            111


Q ss_pred             cCC--CCCeEEEEecC--CCcChHHHHHHHHHhcc
Q 014461          285 HLP--GYERIFMTSGL--KGAGLKALTQYLMEQAV  315 (424)
Q Consensus       285 ~~~--~~~~~~~iSA~--~g~gi~~L~~~i~~~l~  315 (424)
                      ...  ....++.+||+  ++.++++++..+...+.
T Consensus       151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         151 VLPEVANPALLETSAKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             hhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence            111  12238999999  99999999999888774

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.53  E-value=1.5e-13  Score=124.89  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=70.6

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +|+++|++|||||||+++|.+..+...  .+.++.........  ..+..+.+|||||+...         ..   ....
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---------~~---~~~~   67 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---------RD---KLLE   67 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH---------HH---HHHH
Confidence            589999999999999999998765322  11111111111111  23567999999997632         11   1123


Q ss_pred             hcccc-cEEEEEEeCCCCCCCchHHHHHHHHHhcc---CCCCCCcEEEEEecCCCCCC
Q 014461          219 AVNLF-EVLMVVFDVHRHLTSPDSRVIRLIERMGK---QAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       219 ~~~~a-D~vl~VvD~~~~~~~~~~~~~~~l~~~~~---~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      .+..+ +++|+|+|++... ........++..+..   ...+..|+++|+||+|+...
T Consensus        68 ~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          68 TLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             HHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            45566 9999999997542 122222233322111   11235899999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12289 GTPase RsgA; Reviewed

Probab=99.53  E-value=3.7e-15  Score=145.32  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=86.1

Q ss_pred             cEEEEeCCCCccCCC-CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 014461           47 DSVFDSSYFRIPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALER  124 (424)
Q Consensus        47 d~vie~~dar~p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  124 (424)
                      ++++.+....+|++. .||+||++.+....|..+|...|+.++++++ ++.|...+                 ++. +  
T Consensus       111 R~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL-----------------~~~-L--  170 (352)
T PRK12289        111 RFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEAL-----------------LEQ-L--  170 (352)
T ss_pred             HHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHH-----------------hhh-h--
Confidence            333344445566666 7899998877778899999899999999998 88887666                 111 1  


Q ss_pred             hHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC-------ceeeEEEEEEecCCccEEEEeCCCc
Q 014461          125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTHEVLGVMTKADTQICIFDTPGL  197 (424)
Q Consensus       125 ~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-------tt~~~~~~~~~~~~~~i~l~DtpG~  197 (424)
                                   ....++|+|+||||||||+|+|++.....++..++       ||++.....+..++   .++||||+
T Consensus       171 -------------~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~  234 (352)
T PRK12289        171 -------------RNKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGF  234 (352)
T ss_pred             -------------ccceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCc
Confidence                         11247999999999999999999876655555555       77776543332222   89999999


Q ss_pred             ccCCC
Q 014461          198 MLNKS  202 (424)
Q Consensus       198 ~~~~~  202 (424)
                      ..+..
T Consensus       235 ~~~~l  239 (352)
T PRK12289        235 NQPDL  239 (352)
T ss_pred             ccccc
Confidence            87653

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.53  E-value=2.5e-13  Score=122.98  Aligned_cols=144  Identities=17%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEec-------CCccEEEEeCCCcccCCCCCChhhhhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTK-------ADTQICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~-------~~~~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      .+|+++|.+|||||||++++++..+..  ....|.. ......+..       ....+.+|||+|...+.         .
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~---------~   69 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVK---------S   69 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHH---------H
Confidence            379999999999999999999877642  2222211 111111222       22458899999986431         1


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-------------------CCCCCcEEEEEecCCCCCC
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-------------------APPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~p~ilV~NK~Dl~~~  272 (424)
                       +.  ...+..+|++|+|+|.++..  ....+..|+.++...                   ...+.|+++|+||+|+.+.
T Consensus        70 -l~--~~~yr~ad~iIlVyDvtn~~--Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          70 -TR--AVFYNQVNGIILVHDLTNRK--SSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             -HH--HHHhCcCCEEEEEEECcChH--HHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence             11  13467899999999998643  333455666555321                   1235899999999999764


Q ss_pred             hhh----HHHHHHHHhcCCCCCeEEEEecCCC
Q 014461          273 KKD----LLKVAEQFKHLPGYERIFMTSGLKG  300 (424)
Q Consensus       273 ~~~----~~~~~~~~~~~~~~~~~~~iSA~~g  300 (424)
                      +..    .......+++..+.+ .+..++..+
T Consensus       145 r~~~~~~~~~~~~~ia~~~~~~-~i~~~c~~~  175 (202)
T cd04102         145 KESSGNLVLTARGFVAEQGNAE-EINLNCTNG  175 (202)
T ss_pred             cccchHHHhhHhhhHHHhcCCc-eEEEecCCc
Confidence            211    112233455555665 555666644

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PRK13351 elongation factor G; Reviewed

Probab=99.52  E-value=1e-13  Score=148.17  Aligned_cols=117  Identities=21%  Similarity=0.283  Sum_probs=79.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcc-----eee------cC------CCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKV-----AAV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~-----~~~------~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      ...+|+++|+.|+|||||+++|+...-     ..+      .+      ..+.|.......+.+.+..+.+|||||+.++
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            457899999999999999999974211     001      00      1233433333446677889999999998643


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                                  ...+...+..+|++++|+|++++.......+...+...      +.|+++|+||+|+...
T Consensus        87 ------------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~------~~p~iiviNK~D~~~~  140 (687)
T PRK13351         87 ------------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY------GIPRLIFINKMDRVGA  140 (687)
T ss_pred             ------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEECCCCCCC
Confidence                        12233456778999999999876554444444444332      4789999999998763

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.52  E-value=3e-13  Score=126.20  Aligned_cols=139  Identities=20%  Similarity=0.176  Sum_probs=92.7

Q ss_pred             hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC-CCChhhhh
Q 014461          132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVK  210 (424)
Q Consensus       132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~  210 (424)
                      .++......+|+++|.+|||||||+|+|+|.....++....+|..........++..+.+|||||+.+... ........
T Consensus        24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~  103 (249)
T cd01853          24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKIL  103 (249)
T ss_pred             hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHH
Confidence            34566678999999999999999999999998877777777777766666667788999999999976521 01111111


Q ss_pred             hHHHHHHhhcccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          211 VRVESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       211 ~~~~~~~~~~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ..+...+. -...|++++|...+. .....+..+.+.+.+...... -.++++|+||+|...+
T Consensus       104 ~~I~~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i-~~~~ivV~T~~d~~~p  164 (249)
T cd01853         104 SSIKRYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI-WRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh-HhCEEEEEeCCccCCC
Confidence            11222211 125688998876642 334444466666665432111 1469999999998654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.52  E-value=8.7e-15  Score=136.91  Aligned_cols=178  Identities=17%  Similarity=0.139  Sum_probs=119.5

Q ss_pred             HHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCccChh--hHHHHHHhcCCeEEEeec-cccccchhhh
Q 014461           27 IHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQEP--TWDEKYRERTDRIVFGEE-AQKGKLRIFQ  102 (424)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~~~~--~~~~~~~~~~~~i~f~~~-~~~~~~~l~~  102 (424)
                      +-.+++..|.++.  .. +.++++.++...+.++. .+|+||++.+...  ++...|.+.||.+++.++ ++.+...+  
T Consensus        84 iiIvs~~~P~~~~--~~-ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l--  158 (301)
T COG1162          84 IIVVSLVDPDFNT--NL-LDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEEL--  158 (301)
T ss_pred             EEEEeccCCCCCH--HH-HHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHH--
Confidence            3346777777777  77 77899999999998777 9999999877655  689999999999999998 77787766  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCc---ceeec----CCCCcee
Q 014461          103 EEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK---VAAVS----RKTNTTT  175 (424)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~---~~~~~----~~~~tt~  175 (424)
                                      ...+               .+...+++|++|||||||+|+|.+..   ...++    ..-+||+
T Consensus       159 ----------------~~~l---------------~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt  207 (301)
T COG1162         159 ----------------AELL---------------AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTT  207 (301)
T ss_pred             ----------------HHHh---------------cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccc
Confidence                            1111               34468899999999999999999743   22233    3346777


Q ss_pred             eEEEEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461          176 HEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (424)
Q Consensus       176 ~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~  248 (424)
                      +.....+..+|   .++||||+.+..- .....++...+......+..|    -.-|++ +..++...+...++
T Consensus       208 ~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~C----kFr~C~-H~~EPgCav~~av~  273 (301)
T COG1162         208 HVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQC----KFRDCT-HTHEPGCAVKAAVE  273 (301)
T ss_pred             eEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCC----CCCCCC-CCCCCCcHHHHHHH
Confidence            76665555556   8999999987653 233333333333333222221    223343 34455555555444

>cd01882 BMS1 Bms1

Probab=99.51  E-value=4e-13  Score=124.04  Aligned_cols=140  Identities=16%  Similarity=0.344  Sum_probs=91.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...+..|+++|.+|+|||||+|.|.+.. ...+....++     .......+.++.++||||..               .
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~---------------~   95 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI---------------N   95 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH---------------H
Confidence            4567889999999999999999998642 1112222222     11233467889999999842               1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEecCCCCCChhhHHHHHHHH-----hcCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMNKVDLVTKKKDLLKVAEQF-----KHLPG  288 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~  288 (424)
                      ..+..+..+|++++|+|++.+....+..+..++...+      .|. ++|+||+|+........+....+     .+...
T Consensus        96 ~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g------~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~  169 (225)
T cd01882          96 AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHG------FPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ  169 (225)
T ss_pred             HHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcC------CCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC
Confidence            2233457789999999998776665656666665543      564 55999999975433233222222     22345


Q ss_pred             CCeEEEEecCCCc
Q 014461          289 YERIFMTSGLKGA  301 (424)
Q Consensus       289 ~~~~~~iSA~~g~  301 (424)
                      +.+++++||++.-
T Consensus       170 ~~ki~~iSa~~~~  182 (225)
T cd01882         170 GAKLFYLSGIVHG  182 (225)
T ss_pred             CCcEEEEeeccCC
Confidence            5689999999763

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.50  E-value=2.2e-12  Score=125.33  Aligned_cols=88  Identities=23%  Similarity=0.319  Sum_probs=71.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcccCCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS  202 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~~  202 (424)
                      ++|+++|.||||||||+|+|++.. ..++++|+||+++..+.+...+                 .++.++||||+.....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            689999999999999999999988 5789999999988887765544                 2589999999975321


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                           .........+..++.+|++++|+|+.
T Consensus        82 -----~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 -----KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             -----hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                 11233456677889999999999985

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.50  E-value=1.8e-13  Score=132.83  Aligned_cols=160  Identities=18%  Similarity=0.252  Sum_probs=108.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcc--------------eeecCCCCceeeEEEEE--Eec---CCccEEEEeCCCcc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKV--------------AAVSRKTNTTTHEVLGV--MTK---ADTQICIFDTPGLM  198 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~--------------~~~~~~~~tt~~~~~~~--~~~---~~~~i~l~DtpG~~  198 (424)
                      +..+..++.+-..|||||..+|+....              .......|.|.......  +..   ..+.+.|+||||+.
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            346788999999999999999974211              01223334554433322  222   34668999999998


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL  277 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~  277 (424)
                      ++..         .+.++   +..|.+.++|+|++++...+.. .+...++.       +..++-|+||+||+.  ++..
T Consensus        88 DFsY---------EVSRS---LAACEGalLvVDAsQGveAQTlAN~YlAle~-------~LeIiPViNKIDLP~--Adpe  146 (603)
T COG0481          88 DFSY---------EVSRS---LAACEGALLVVDASQGVEAQTLANVYLALEN-------NLEIIPVLNKIDLPA--ADPE  146 (603)
T ss_pred             ceEE---------Eehhh---HhhCCCcEEEEECccchHHHHHHHHHHHHHc-------CcEEEEeeecccCCC--CCHH
Confidence            7642         23333   4557899999999987655432 22222321       356899999999987  4455


Q ss_pred             HHHHHHhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          278 KVAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       278 ~~~~~~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ...+++.+..|.+  ..+.||||+|.||+++++.|.+.+|...
T Consensus       147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence            5556666555554  5789999999999999999999997543

>PTZ00099 rab6; Provisional

Probab=99.49  E-value=2.8e-13  Score=120.32  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      ...++.+|||||...+..         ...   ..++.+|++|+|+|+++..+  ...+..|+..+.....++.|+++|+
T Consensus        27 ~~v~l~iwDt~G~e~~~~---------~~~---~~~~~ad~~ilv~D~t~~~s--f~~~~~w~~~i~~~~~~~~piilVg   92 (176)
T PTZ00099         27 GPVRLQLWDTAGQERFRS---------LIP---SYIRDSAAAIVVYDITNRQS--FENTTKWIQDILNERGKDVIIALVG   92 (176)
T ss_pred             EEEEEEEEECCChHHhhh---------ccH---HHhCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            346789999999865421         111   23578999999999976322  2333455554433223458899999


Q ss_pred             ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ||+|+...+.........+....+. .++++||++|.||+++|++|.+.+++.+
T Consensus        93 NK~DL~~~~~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         93 NKTDLGDLRKVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             ECcccccccCCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            9999965322222223333433444 4899999999999999999999987644

>PRK12288 GTPase RsgA; Reviewed

Probab=99.48  E-value=3.9e-14  Score=138.19  Aligned_cols=174  Identities=16%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             hhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCcc---ChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHH
Q 014461           32 SAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEE  106 (424)
Q Consensus        32 ~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~---~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~  106 (424)
                      +..|.+++  .. ..++++.+++..+|.+. .||+||.+..   ....|...|...++.++++++ ++.|...+      
T Consensus       129 s~~p~~s~--~~-Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL------  199 (347)
T PRK12288        129 AVLPELSL--NI-IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEEL------  199 (347)
T ss_pred             eCCCCCCH--HH-HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHH------
Confidence            34454444  33 45566667778888888 9999998754   356788888888999999998 88887766      


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-------CceeeEEE
Q 014461          107 ERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------NTTTHEVL  179 (424)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-------~tt~~~~~  179 (424)
                                 .+ .+.               ...++|+|.||||||||+|+|++.....++..+       +||+....
T Consensus       200 -----------~~-~L~---------------~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l  252 (347)
T PRK12288        200 -----------EA-ALT---------------GRISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL  252 (347)
T ss_pred             -----------HH-HHh---------------hCCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE
Confidence                       11 110               113789999999999999999987655554443       36666655


Q ss_pred             EEEecCCccEEEEeCCCcccCCCC-CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH
Q 014461          180 GVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (424)
Q Consensus       180 ~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~  249 (424)
                      ..+..++   .++||||+....-. ...+.+...+.........|    -.-|++ +..++...+.+.++.
T Consensus       253 ~~l~~~~---~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~C----rF~dC~-H~~EpgCaV~~Av~~  315 (347)
T PRK12288        253 YHFPHGG---DLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTC----KFRDCK-HDDDPGCALREAVEE  315 (347)
T ss_pred             EEecCCC---EEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCC----CCCCCc-cCCCCCChHHHHHHc
Confidence            4443333   69999999876532 22223333333322222222    223443 445566666666653

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=4.6e-14  Score=117.52  Aligned_cols=156  Identities=19%  Similarity=0.211  Sum_probs=105.4

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCcee----eEEEEEEecC---------CccEEEEeCCCcccCCCCCChh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT----HEVLGVMTKA---------DTQICIFDTPGLMLNKSGYSHK  207 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~----~~~~~~~~~~---------~~~i~l~DtpG~~~~~~~~~~~  207 (424)
                      +.+.+|.+||||||++.+....++.   ....+|.    .....++...         ...+.+|||.|+..+++     
T Consensus        11 kfLaLGDSGVGKTs~Ly~YTD~~F~---~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS-----   82 (219)
T KOG0081|consen   11 KFLALGDSGVGKTSFLYQYTDGKFN---TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS-----   82 (219)
T ss_pred             HHHhhccCCCCceEEEEEecCCccc---ceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH-----
Confidence            4567899999999999988866542   1111110    0111111111         12478999999876521     


Q ss_pred             hhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461          208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP-KQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~-~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~  286 (424)
                             .+-...++|-..++++|.++.  .+...+..|+.++....-- +.-+++++||+|+.+.+....+....+++.
T Consensus        83 -------LTTAFfRDAMGFlLiFDlT~e--qSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k  153 (219)
T KOG0081|consen   83 -------LTTAFFRDAMGFLLIFDLTSE--QSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK  153 (219)
T ss_pred             -------HHHHHHHhhccceEEEeccch--HHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence                   112235667889999999753  2334566777666543221 234889999999998777777778888888


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++.+ +|++||-+|.||++..+.|...+
T Consensus       154 yglP-YfETSA~tg~Nv~kave~Lldlv  180 (219)
T KOG0081|consen  154 YGLP-YFETSACTGTNVEKAVELLLDLV  180 (219)
T ss_pred             hCCC-eeeeccccCcCHHHHHHHHHHHH
Confidence            8987 99999999999999888777654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.48  E-value=7.1e-13  Score=134.00  Aligned_cols=151  Identities=18%  Similarity=0.228  Sum_probs=96.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc------------------------e------eecCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV------------------------A------AVSRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~------------------------~------~~~~~~~tt~~~~~~~~~~~~  186 (424)
                      ....+|+++|+.++|||||+.+|+...-                        +      ......+.|.+.....+...+
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            3568899999999999999999873110                        0      011122455555555566778


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCC-
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQ-  258 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~-  258 (424)
                      ..+.++||||+.++            .......+..+|++++|+|+..+.-       .........+..++      . 
T Consensus        85 ~~i~liDtPGh~df------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g------i~  146 (447)
T PLN00043         85 YYCTVIDAPGHRDF------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG------VK  146 (447)
T ss_pred             EEEEEEECCCHHHH------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC------CC
Confidence            88999999997643            3444556778999999999986421       11222223333332      4 


Q ss_pred             cEEEEEecCCCCCC---hhhHH---HHHHHHhcCCCC----CeEEEEecCCCcChHH
Q 014461          259 KRVLCMNKVDLVTK---KKDLL---KVAEQFKHLPGY----ERIFMTSGLKGAGLKA  305 (424)
Q Consensus       259 p~ilV~NK~Dl~~~---~~~~~---~~~~~~~~~~~~----~~~~~iSA~~g~gi~~  305 (424)
                      ++|+++||+|+...   ...+.   +.++.+....++    .+++++||++|.|+.+
T Consensus       147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            47889999998621   12222   223333333343    3599999999999864

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.47  E-value=7.5e-14  Score=115.47  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=69.5

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcce---eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ||+|+|.+|||||||+++|++....   ......+.+..............+.+||++|........         .   
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------~---   68 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH---------Q---   68 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS---------H---
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc---------c---
Confidence            6899999999999999999987765   112222222222222233333458899999985432110         0   


Q ss_pred             hhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVD  268 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~D  268 (424)
                      ..+..+|++++|+|.++..+... ..+..++....... .+.|+++|+||.|
T Consensus        69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            11566899999999975322211 13445566654322 2489999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.46  E-value=5.8e-13  Score=130.05  Aligned_cols=174  Identities=16%  Similarity=0.205  Sum_probs=116.4

Q ss_pred             hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhh
Q 014461          132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      +..-......++++|.||||||||+|.+...... +.+++.||.....+++.+.--.+.++||||+.+...  ......+
T Consensus       161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~pl--EdrN~IE  237 (620)
T KOG1490|consen  161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPE--EDRNIIE  237 (620)
T ss_pred             CCCCCCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcch--hhhhHHH
Confidence            3344667889999999999999999998877664 789999999888887777666788999999975421  1111111


Q ss_pred             HHH-HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHHHHHHhcCC
Q 014461          212 RVE-SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLP  287 (424)
Q Consensus       212 ~~~-~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~  287 (424)
                      +.. .++..+  -.+|+|+.|.+......-..-.++...+... ..+.|+|+|+||+|+....   +.-.+.++.+.+..
T Consensus       238 mqsITALAHL--raaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~  314 (620)
T KOG1490|consen  238 MQIITALAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG  314 (620)
T ss_pred             HHHHHHHHHh--hhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhcc
Confidence            111 223333  3579999999866555444333333333211 1257899999999998753   22234555555554


Q ss_pred             CCCeEEEEecCCCcChHHHHHHHHH
Q 014461          288 GYERIFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       288 ~~~~~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      +. .++.+|..+.+|+-++...-++
T Consensus       315 ~v-~v~~tS~~~eegVm~Vrt~ACe  338 (620)
T KOG1490|consen  315 NV-KVVQTSCVQEEGVMDVRTTACE  338 (620)
T ss_pred             Cc-eEEEecccchhceeeHHHHHHH
Confidence            44 4999999999998776554443

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=9.1e-13  Score=113.60  Aligned_cols=161  Identities=15%  Similarity=0.158  Sum_probs=105.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+..+|+++|-.||||||+++.|...++..+.+..+....    .+.+.+..+.+||..|+...+..         .  
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE----~v~ykn~~f~vWDvGGq~k~R~l---------W--   78 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE----TVEYKNISFTVWDVGGQEKLRPL---------W--   78 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee----EEEEcceEEEEEecCCCcccccc---------h--
Confidence            34568999999999999999999987766544333333333    24466889999999998643221         1  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHH--hcCCCC-Ce
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLPGY-ER  291 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~-~~  291 (424)
                       ..++...+++|||+|.++...-  ....+.+..+ ......+.|+++..||.|+...-. ..++.+.+  ....+. -.
T Consensus        79 -~~Y~~~t~~lIfVvDS~Dr~Ri--~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~  154 (181)
T KOG0070|consen   79 -KHYFQNTQGLIFVVDSSDRERI--EEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWH  154 (181)
T ss_pred             -hhhccCCcEEEEEEeCCcHHHH--HHHHHHHHHHHcCcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcE
Confidence             1345778999999999764222  1222223322 222234689999999999986421 11111111  111111 14


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +..|+|.+|+|+.+-++||.+.+.
T Consensus       155 iq~~~a~~G~GL~egl~wl~~~~~  178 (181)
T KOG0070|consen  155 IQSTCAISGEGLYEGLDWLSNNLK  178 (181)
T ss_pred             EeeccccccccHHHHHHHHHHHHh
Confidence            788999999999999999998874

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.45  E-value=4.4e-12  Score=109.19  Aligned_cols=159  Identities=21%  Similarity=0.215  Sum_probs=107.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee-------cCC--CCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCCh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-------SRK--TNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSH  206 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-------~~~--~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~  206 (424)
                      ....+|++.|+.++||||++.++.......+       +..  ..||...-.+.+...+ ..++|+||||+..+      
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------   81 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------   81 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH------
Confidence            4568999999999999999999987553221       111  1244444444444444 78999999998654      


Q ss_pred             hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461          207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (424)
Q Consensus       207 ~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~  286 (424)
                         ..++..   ..+.++.+++++|.+.+.......+.+.+....     ..|+++++||.|+.... -..+..+.+...
T Consensus        82 ---~fm~~~---l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~-ppe~i~e~l~~~  149 (187)
T COG2229          82 ---KFMWEI---LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN-----PIPVVVAINKQDLFDAL-PPEKIREALKLE  149 (187)
T ss_pred             ---HHHHHH---HhCCcceEEEEEecCCCcchHHHHHHHHHhhcc-----CCCEEEEeeccccCCCC-CHHHHHHHHHhc
Confidence               222222   246689999999998876664455555555432     27899999999998742 122222333322


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      .--.++++++|..++|..+.++.+...
T Consensus       150 ~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         150 LLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cCCCceeeeecccchhHHHHHHHHHhh
Confidence            112359999999999999999988876

>PLN00023 GTP-binding protein; Provisional

Probab=99.45  E-value=1.2e-12  Score=124.78  Aligned_cols=138  Identities=19%  Similarity=0.226  Sum_probs=85.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEec---------------CCccEEEEeCCCccc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTK---------------ADTQICIFDTPGLML  199 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~---------------~~~~i~l~DtpG~~~  199 (424)
                      ....+||+++|..|||||||++++++..+..  ....|. .......+..               ....+.||||+|...
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCccc--ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            4456899999999999999999999876532  111111 1111111221               124588999999865


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC------------CCCCcEEEEEecC
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA------------PPKQKRVLCMNKV  267 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~------------~~~~p~ilV~NK~  267 (424)
                      +..          +.  -..+..+|++|+|+|+++..  ....+..|+..+....            ..+.|+++|+||+
T Consensus        96 frs----------L~--~~yyr~AdgiILVyDITdr~--SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~  161 (334)
T PLN00023         96 YKD----------CR--SLFYSQINGVIFVHDLSQRR--TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA  161 (334)
T ss_pred             hhh----------hh--HHhccCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence            421          11  12367899999999997632  3334555655554321            1247999999999


Q ss_pred             CCCCChh------hHHHHHHHHhcCCCC
Q 014461          268 DLVTKKK------DLLKVAEQFKHLPGY  289 (424)
Q Consensus       268 Dl~~~~~------~~~~~~~~~~~~~~~  289 (424)
                      |+...+.      ...+..+.+++..++
T Consensus       162 DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        162 DIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccccccccccccccHHHHHHHHHHcCC
Confidence            9965321      234566677665543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.4e-12  Score=125.55  Aligned_cols=164  Identities=22%  Similarity=0.358  Sum_probs=107.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC------------------------cceee------cCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT------------------------KVAAV------SRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~------------------------~~~~~------~~~~~tt~~~~~~~~~~~~  186 (424)
                      ....+++++|+..+|||||+-+|+..                        .++-+      ....+.|.+.....+..+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            35688999999999999999998741                        01111      1223455555555566677


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      ..+.++|+||+.++            +........+||+.++|+|++.+       ...+..+-.-+...++     -..
T Consensus        85 ~~~tIiDaPGHrdF------------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~  147 (428)
T COG5256          85 YNFTIIDAPGHRDF------------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQ  147 (428)
T ss_pred             ceEEEeeCCchHHH------------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----Cce
Confidence            78999999996543            55666778899999999999865       2223323222333333     134


Q ss_pred             EEEEEecCCCCCChh-hH---HHHHHHHhcCCCCC----eEEEEecCCCcChHHHHHHHHHhccCCCCCCCCC
Q 014461          260 RVLCMNKVDLVTKKK-DL---LKVAEQFKHLPGYE----RIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPL  324 (424)
Q Consensus       260 ~ilV~NK~Dl~~~~~-~~---~~~~~~~~~~~~~~----~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~  324 (424)
                      +|+++||+|+.+-++ ..   ...+..+.+..++.    +++||||.+|.|+.+--       ...||+..+.
T Consensus       148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-------~~~pWY~GpT  213 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-------ENMPWYKGPT  213 (428)
T ss_pred             EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-------cCCcCccCCh
Confidence            899999999986432 22   22333344444443    59999999999987643       2457766554

>cd01900 YchF YchF subfamily

Probab=99.44  E-value=1.2e-12  Score=123.28  Aligned_cols=86  Identities=22%  Similarity=0.313  Sum_probs=68.3

Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-----------------cEEEEeCCCcccCCCCC
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-----------------QICIFDTPGLMLNKSGY  204 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~i~l~DtpG~~~~~~~~  204 (424)
                      |+++|.||||||||+|+|++.+. .++++|+||.+...+.+...+.                 ++.++||||+.....  
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~--   77 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS--   77 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc--
Confidence            58999999999999999999887 6899999999888877665443                 489999999985422  


Q ss_pred             ChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                         .........+..++.+|++++|+|+.
T Consensus        78 ---~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          78 ---KGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             ---hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence               11223345667788999999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK12740 elongation factor G; Reviewed

Probab=99.43  E-value=9.7e-13  Score=140.44  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             EecCCCChhHHHHhHhCCcce-----------eecC------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChh
Q 014461          145 IGAPNAGKSSIINYMVGTKVA-----------AVSR------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK  207 (424)
Q Consensus       145 vG~~~~GKStLin~l~~~~~~-----------~~~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~  207 (424)
                      +|++|+|||||+++|+...-.           .+.+      ..+.|.......+.+.+..+.+|||||...+       
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~-------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF-------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence            599999999999999642211           0111      1344444444556778899999999998532       


Q ss_pred             hhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                           ...+...+..+|++++|+|++.+.......+...+...      +.|+++|+||+|+...
T Consensus        74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~------~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY------GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc------CCCEEEEEECCCCCCC
Confidence                 12233446678999999999876544443444444332      4789999999998753

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.43  E-value=2.2e-12  Score=122.26  Aligned_cols=134  Identities=24%  Similarity=0.335  Sum_probs=88.5

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ......++|+++|.+|+||||++|+|+|.+.+.++....++..........++.++.+|||||+.+..  .........+
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~i  110 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNII  110 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHH
Confidence            44567899999999999999999999999877666666555544444445678899999999997542  1111111112


Q ss_pred             HHHHhhcccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      +... .-...|+++||...+. ..+..+..+.+.+........ ..++|+|+|+.|...
T Consensus       111 k~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i-w~~~IVVfTh~d~~~  167 (313)
T TIGR00991       111 KRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI-WRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHh-hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh-hccEEEEEECCccCC
Confidence            2221 1236899999965432 344455666666665542211 246899999999764

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.43  E-value=4.1e-13  Score=131.74  Aligned_cols=154  Identities=26%  Similarity=0.409  Sum_probs=100.3

Q ss_pred             CCcEEEEeCCCCccCCC-CC--------------------CCCCCCccChhhHHHHHHhcCCeEEEeec---cccccchh
Q 014461           45 DCDSVFDSSYFRIPTID-DP--------------------QNNNAAKKQEPTWDEKYRERTDRIVFGEE---AQKGKLRI  100 (424)
Q Consensus        45 ~~d~vie~~dar~p~~~-~~--------------------k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~---~~~~~~~l  100 (424)
                      -+|+||.+.|||-|++. ++                    |.||.+++...+|..||.+.+-.++|-++   +..+-...
T Consensus       174 rSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~  253 (562)
T KOG1424|consen  174 RSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKV  253 (562)
T ss_pred             hcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccc
Confidence            36999999999999999 55                    55999999999999999999988777777   22222211


Q ss_pred             hhHHH----HHHHHH----------HHHHHHHH-HHHHhhHHH--HHHhh-----hhcccceEEEEEecCCCChhHHHHh
Q 014461          101 FQEEE----EERKHR----------ALAKALLQ-AALERQEEE--EEEVK-----EEDQKSVAVGIIGAPNAGKSSIINY  158 (424)
Q Consensus       101 ~~~~~----~~~~~~----------~~~~~~~~-~~l~~~~~~--~~~~~-----~~~~~~~~v~vvG~~~~GKStLin~  158 (424)
                      .++..    ......          .+.+.... ..+...+.+  .....     +.......|++||.|||||||+||+
T Consensus       254 ~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINa  333 (562)
T KOG1424|consen  254 LKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINA  333 (562)
T ss_pred             hhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHH
Confidence            11110    000000          00000000 000000000  00000     1111248899999999999999999


Q ss_pred             HhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          159 MVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       159 l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      |.|.+...|+..||.|.+-+...+.   ..+.|.|+||..-+.
T Consensus       334 LvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPS  373 (562)
T KOG1424|consen  334 LVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPS  373 (562)
T ss_pred             HhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccC
Confidence            9999988899999999998765443   467999999998664

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.43  E-value=5.6e-13  Score=117.79  Aligned_cols=164  Identities=15%  Similarity=0.181  Sum_probs=113.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-Cc--cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DT--QICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++++||..++|||+|+..+....+.  ..+..|-.+.....+..+ +.  .+.+|||.|+.++...          +
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrl----------R   70 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRL----------R   70 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccc----------c
Confidence            4688999999999999999998877654  333344444443434442 44  4689999999876431          1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH------------HHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQ  282 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~------------~~~~~~  282 (424)
                       . -.+.++|+++++|+..++.+.. ....+|+.++.... ++.|+|+|++|.||..+...+            .+....
T Consensus        71 -p-lsY~~tdvfl~cfsv~~p~S~~-nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~  146 (198)
T KOG0393|consen   71 -P-LSYPQTDVFLLCFSVVSPESFE-NVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE  146 (198)
T ss_pred             -c-cCCCCCCEEEEEEEcCChhhHH-HHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence             1 1467789999999987654332 22345666665444 569999999999998542111            122344


Q ss_pred             HhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      +++..|...+++|||++..|++++|+.........
T Consensus       147 lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~  181 (198)
T KOG0393|consen  147 LAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRP  181 (198)
T ss_pred             HHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence            55666777899999999999999999888776443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.42  E-value=1.1e-12  Score=122.58  Aligned_cols=153  Identities=21%  Similarity=0.181  Sum_probs=94.3

Q ss_pred             CCccCCC-CCCCCCCCccC-hhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014461           55 FRIPTID-DPQNNNAAKKQ-EPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEE  131 (424)
Q Consensus        55 ar~p~~~-~~k~Dl~~~~~-~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  131 (424)
                      ..+|++. .||+||.+... ..+|...|.+.++.++++++ ++.|..++                 .+ .+         
T Consensus        66 ~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eL-----------------f~-~l---------  118 (245)
T TIGR00157        66 QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKEL-----------------IE-AL---------  118 (245)
T ss_pred             CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHH-----------------Hh-hh---------
Confidence            3445555 67999976444 34788889888888899998 87887666                 11 11         


Q ss_pred             hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCC-
Q 014461          132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-  203 (424)
Q Consensus       132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~-  203 (424)
                            ....++++|+||||||||+|+|.+.....+++       ..+||++.....+ .++   .++||||+..+.-. 
T Consensus       119 ------~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l~~  188 (245)
T TIGR00157       119 ------QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGLWH  188 (245)
T ss_pred             ------cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCCCC
Confidence                  12468999999999999999999865433222       3347777665444 222   89999999876431 


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~  249 (424)
                      ....++...+.........    +-.-|.+ +..++...+.+.++.
T Consensus       189 ~~~~~~~~~f~e~~~~~~~----C~f~~C~-H~~ep~C~v~~a~~~  229 (245)
T TIGR00157       189 LEPEQLTQGFVEFRDYLGE----CKFRDCL-HQSEPGCAVRQAVEQ  229 (245)
T ss_pred             CCHHHHHHhCHHHHHHhCC----CCCCCCc-cCCCCCChHHHHHHc
Confidence            2222333333322222222    2223443 456666677666653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.41  E-value=5.7e-12  Score=116.71  Aligned_cols=194  Identities=20%  Similarity=0.253  Sum_probs=114.5

Q ss_pred             hhhhcccceEEEEEecCCCChhHHHHhHh------CCcceee--cCCCCceeeEEEE-----------------------
Q 014461          132 VKEEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAV--SRKTNTTTHEVLG-----------------------  180 (424)
Q Consensus       132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~--~~~~~tt~~~~~~-----------------------  180 (424)
                      ..+...+...|+|.|.||+|||||+..|.      |.+++..  .+..+.|.....+                       
T Consensus        44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG  123 (323)
T COG1703          44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG  123 (323)
T ss_pred             HhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc
Confidence            44666778899999999999999999986      3333322  2222222111100                       


Q ss_pred             --------------EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHH
Q 014461          181 --------------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL  246 (424)
Q Consensus       181 --------------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~  246 (424)
                                    .+.-.++.++++.|.|.....     -          .....+|.+++|.-.  +..+....+..-
T Consensus       124 ~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-----v----------~I~~~aDt~~~v~~p--g~GD~~Q~iK~G  186 (323)
T COG1703         124 TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-----V----------DIANMADTFLVVMIP--GAGDDLQGIKAG  186 (323)
T ss_pred             cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch-----h----------HHhhhcceEEEEecC--CCCcHHHHHHhh
Confidence                          022346889999999987542     1          123457988888765  334444444455


Q ss_pred             HHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH-------HhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461          247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-------FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       247 l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~-------~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      +-++.        -++|+||.|....+....+....       +......++++.+||.+|+|+++|++.|.++......
T Consensus       187 imEia--------Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~  258 (323)
T COG1703         187 IMEIA--------DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE  258 (323)
T ss_pred             hhhhh--------heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence            55544        58999999965542222111111       1222344689999999999999999999987754321


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHhhcCcc
Q 014461          320 SEDPLTMSEEVMKNISLEVVRERLLDHVHQE  350 (424)
Q Consensus       320 ~~~~~~~~~~~~~~~~~e~ire~l~~~l~~e  350 (424)
                      ..-...........+...++++.+.+.+..+
T Consensus       259 sg~~~~~rr~q~~~~~~~~v~~~v~~~~~~~  289 (323)
T COG1703         259 SGLFTEKRRTQYVEWIRTLVRDEVLDRLEAN  289 (323)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHcc
Confidence            1111111122233344556666666666443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.41  E-value=1.4e-13  Score=125.90  Aligned_cols=156  Identities=20%  Similarity=0.310  Sum_probs=88.7

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCC--Cce---------------e---eEEEEE------
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKT--NTT---------------T---HEVLGV------  181 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~--~tt---------------~---~~~~~~------  181 (424)
                      +...+...|+|.|+||+|||||++.|.      |.+++...-.|  ..|               .   -..+..      
T Consensus        24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~l  103 (266)
T PF03308_consen   24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSL  103 (266)
T ss_dssp             GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred             hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence            445578899999999999999999986      33333221111  111               0   001110      


Q ss_pred             -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461          182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (424)
Q Consensus       182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~  248 (424)
                                   +...++.++|+.|.|....       +    +    .....+|.+++|+-...  .+....+..-+-
T Consensus       104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQs-------E----~----~I~~~aD~~v~v~~Pg~--GD~iQ~~KaGim  166 (266)
T PF03308_consen  104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQS-------E----V----DIADMADTVVLVLVPGL--GDEIQAIKAGIM  166 (266)
T ss_dssp             HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH-------H----H----HHHTTSSEEEEEEESST--CCCCCTB-TTHH
T ss_pred             CCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc-------H----H----HHHHhcCeEEEEecCCC--ccHHHHHhhhhh
Confidence                         2335788999999998743       1    1    22456899999988743  222222223333


Q ss_pred             HhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++        .-++|+||+|+...+....+....+.-.     ...++++.+||.+|.|+++|++.|.++.
T Consensus       167 Ei--------aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  167 EI--------ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             HH---------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             hh--------ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33        2589999999654322222222222211     1235899999999999999999998765

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK13768 GTPase; Provisional

Probab=99.41  E-value=1.4e-12  Score=122.35  Aligned_cols=126  Identities=19%  Similarity=0.189  Sum_probs=74.8

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+.+|||||..+....   ......+.+.+.... ++++++|+|++......+.....++...... ..+.|+++|+||
T Consensus        97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK  171 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF---RESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNK  171 (253)
T ss_pred             CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEh
Confidence            46899999998764211   111111222222222 7999999999754444343333333211100 014789999999


Q ss_pred             CCCCCChh--hHHHHHH-------------------------HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          267 VDLVTKKK--DLLKVAE-------------------------QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       267 ~Dl~~~~~--~~~~~~~-------------------------~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      +|+.+..+  ......+                         .+........++++||+++.|+++|+++|.+.++..
T Consensus       172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~  249 (253)
T PRK13768        172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG  249 (253)
T ss_pred             HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence            99986521  1111111                         122223334689999999999999999999998654

>cd01850 CDC_Septin CDC/Septin

Probab=99.40  E-value=5.8e-12  Score=119.71  Aligned_cols=127  Identities=16%  Similarity=0.253  Sum_probs=76.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecC--------CCCcee-eEEEEEEecCC--ccEEEEeCCCcccCCCCCC-h
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------KTNTTT-HEVLGVMTKAD--TQICIFDTPGLMLNKSGYS-H  206 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~--------~~~tt~-~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~-~  206 (424)
                      .++|+++|.+|+|||||+|+|++..+.....        ...|+. ......+..++  .++.+|||||+.+...... .
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            5789999999999999999999887654332        222322 22222333444  4689999999976532110 0


Q ss_pred             hhhh----hHHHHHH---------hhc--ccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          207 KDVK----VRVESAW---------SAV--NLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       207 ~~~~----~~~~~~~---------~~~--~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      ..+.    ..+...+         ..+  ..+|+++++++.+. ++...+..+++.+..       ..|+++|+||+|+.
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-------~v~vi~VinK~D~l  156 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-------RVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-------cCCEEEEEECCCcC
Confidence            1111    0111111         011  25789999999864 333334444444432       37899999999997


Q ss_pred             CC
Q 014461          271 TK  272 (424)
Q Consensus       271 ~~  272 (424)
                      ..
T Consensus       157 ~~  158 (276)
T cd01850         157 TP  158 (276)
T ss_pred             CH
Confidence            63

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.40  E-value=3.3e-12  Score=116.91  Aligned_cols=173  Identities=16%  Similarity=0.220  Sum_probs=105.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ++|+++|.+|+||||++|.|+|......+. ....|...........+..+.++||||+.+...  ........+...+.
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG--SDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE--EHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc--cHHHHHHHHHHHHH
Confidence            479999999999999999999988765542 234455555555577899999999999976532  22223233333222


Q ss_pred             -hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH--------HHHHhcCCCC
Q 014461          219 -AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV--------AEQFKHLPGY  289 (424)
Q Consensus       219 -~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~--------~~~~~~~~~~  289 (424)
                       .....+++|+|++.. .++..+....+.+..+.....- .-+++|++..|...... +.+.        ++.+.+..+.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~-k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~~  155 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIW-KHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCGG  155 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGG-GGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHH-hHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcCC
Confidence             345689999999997 6777777777777765432111 35889999998766532 2211        2222222232


Q ss_pred             CeEEEEecC------CCcChHHHHHHHHHhccCCC
Q 014461          290 ERIFMTSGL------KGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       290 ~~~~~iSA~------~g~gi~~L~~~i~~~l~~~~  318 (424)
                       .++.++.+      ....+.+|++.|-+.+....
T Consensus       156 -R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  156 -RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             -CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence             35656555      33568888888888776544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.39  E-value=1.1e-11  Score=111.38  Aligned_cols=91  Identities=23%  Similarity=0.369  Sum_probs=71.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ...+|+++|.|.||||||+..+.+.... ...+..||...+.+++.+.+..+.++|.||+.+....     -...-+...
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsq-----gkGRGRQvi  134 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQ-----GKGRGRQVI  134 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCccccccccc-----CCCCCceEE
Confidence            4468999999999999999999876543 4667788999999999999999999999999865321     111223344


Q ss_pred             hhcccccEEEEEEeCCC
Q 014461          218 SAVNLFEVLMVVFDVHR  234 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~  234 (424)
                      ...+.||++++|+|++.
T Consensus       135 avArtaDlilMvLDatk  151 (364)
T KOG1486|consen  135 AVARTADLILMVLDATK  151 (364)
T ss_pred             EEeecccEEEEEecCCc
Confidence            56678999999999974

>cd01859 MJ1464 MJ1464

Probab=99.37  E-value=5.3e-12  Score=109.82  Aligned_cols=108  Identities=27%  Similarity=0.397  Sum_probs=73.7

Q ss_pred             CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccce
Q 014461           62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV  140 (424)
Q Consensus        62 ~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  140 (424)
                      .||+|+.+.+....|..+....+..+++.++ ++.|..++              ...+...+           +......
T Consensus        48 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L--------------~~~l~~~~-----------~~~~~~~  102 (156)
T cd01859          48 LNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKIL--------------RRTIKELA-----------KIDGKEG  102 (156)
T ss_pred             EEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHH--------------HHHHHHHH-----------hhcCCCc
Confidence            3477987655555666444455666788888 88887766              11122211           1123467


Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL  197 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~  197 (424)
                      +++++|.+|+|||||+|+|.+.....+++.+++|+....  .. .+..+.+|||||+
T Consensus       103 ~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~~~DtpGi  156 (156)
T cd01859         103 KVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VK-ITSKIYLLDTPGV  156 (156)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EE-cCCCEEEEECcCC
Confidence            889999999999999999998777777778887765432  22 2347899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.36  E-value=3.8e-12  Score=102.27  Aligned_cols=143  Identities=20%  Similarity=0.314  Sum_probs=95.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .+++++|..|+|||||+++|.|...-  .   ..|..     +.+.+.  ..+||||-.-.+.        .........
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~l--y---kKTQA-----ve~~d~--~~IDTPGEy~~~~--------~~Y~aL~tt   61 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTL--Y---KKTQA-----VEFNDK--GDIDTPGEYFEHP--------RWYHALITT   61 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhh--h---cccce-----eeccCc--cccCCchhhhhhh--------HHHHHHHHH
Confidence            47999999999999999999986542  1   11111     112111  3689999753221        122233344


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      ..++|++++|-.+.++.+.....+.    ..+     ..|+|-|++|+|+.++ +++....+ +....|..++|.+|+.+
T Consensus        62 ~~dadvi~~v~~and~~s~f~p~f~----~~~-----~k~vIgvVTK~DLaed-~dI~~~~~-~L~eaGa~~IF~~s~~d  130 (148)
T COG4917          62 LQDADVIIYVHAANDPESRFPPGFL----DIG-----VKKVIGVVTKADLAED-ADISLVKR-WLREAGAEPIFETSAVD  130 (148)
T ss_pred             hhccceeeeeecccCccccCCcccc----ccc-----ccceEEEEecccccch-HhHHHHHH-HHHHcCCcceEEEeccC
Confidence            6788999999998776544332222    122     3579999999999964 55544444 44444677899999999


Q ss_pred             CcChHHHHHHHHHh
Q 014461          300 GAGLKALTQYLMEQ  313 (424)
Q Consensus       300 g~gi~~L~~~i~~~  313 (424)
                      ..|+++|+++|...
T Consensus       131 ~~gv~~l~~~L~~~  144 (148)
T COG4917         131 NQGVEELVDYLASL  144 (148)
T ss_pred             cccHHHHHHHHHhh
Confidence            99999999998764

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.36  E-value=6.7e-12  Score=118.18  Aligned_cols=187  Identities=16%  Similarity=0.179  Sum_probs=100.7

Q ss_pred             HHHHHHhhHHHHHHhhh--hcccceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCceeeEEEEEEecCCccEE
Q 014461          118 LQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVMTKADTQIC  190 (424)
Q Consensus       118 ~~~~l~~~~~~~~~~~~--~~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~tt~~~~~~~~~~~~~~i~  190 (424)
                      .+..++.++......|.  .......+.++|.||+|||||++.+++.     ....+....++..+...  +...+.++.
T Consensus        81 ~~~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~r--I~~~g~pvv  158 (290)
T PRK10463         81 EIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR--IRATGTPAI  158 (290)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHH--HHhcCCcEE
Confidence            44455555554444443  3456788999999999999999888753     12222222222211000  111223334


Q ss_pred             EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHH----HHhccC--------CCCC
Q 014461          191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLI----ERMGKQ--------APPK  257 (424)
Q Consensus       191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l----~~~~~~--------~~~~  257 (424)
                      .+.|.+..       + ....++..++..+...+.-+++++....+..+.. .+-...    -.+...        ..-.
T Consensus       159 qi~tG~~C-------h-l~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~  230 (290)
T PRK10463        159 QVNTGKGC-------H-LDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFA  230 (290)
T ss_pred             EecCCCCC-------c-CcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhh
Confidence            44443322       1 1134455555555444334444444321111000 000000    000000        0001


Q ss_pred             CcEEEEEecCCCCCC-hhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          258 QKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       258 ~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+.++|+||+|+... ..++....+.+....+..+++++||++|+|+++|.+||.++.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            456999999999863 235667777787777778899999999999999999998753

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.36  E-value=3.3e-11  Score=117.29  Aligned_cols=164  Identities=18%  Similarity=0.301  Sum_probs=91.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-----ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      ....+|+|+|.+|+|||||||+|.|-.     .+.++ ...||.....+ ....-..+.+||.||+..+.  ++..   .
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~--f~~~---~  105 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPY-PHPKFPNVTLWDLPGIGTPN--FPPE---E  105 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS----HH---H
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCC--CCHH---H
Confidence            457899999999999999999998722     22222 22344444333 23445679999999997542  2211   1


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCC--C-----C----Chhh-HHH-
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL--V-----T----KKKD-LLK-  278 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl--~-----~----~~~~-~~~-  278 (424)
                      .+..  ..+...|.+|++.+.  .++..+..+...+..++      +|+++|.+|+|.  .     .    .++. +.+ 
T Consensus       106 Yl~~--~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~g------K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~I  175 (376)
T PF05049_consen  106 YLKE--VKFYRYDFFIIISSE--RFTENDVQLAKEIQRMG------KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEI  175 (376)
T ss_dssp             HHHH--TTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-------EEEEEE--HHHHHHHHHCC-STT--HHTHHHHH
T ss_pred             HHHH--ccccccCEEEEEeCC--CCchhhHHHHHHHHHcC------CcEEEEEecccccHhhhhccCCcccCHHHHHHHH
Confidence            1111  135677988887664  56666777777777765      789999999995  1     0    1111 122 


Q ss_pred             ---HHHHHhcCC-CCCeEEEEecCC--CcChHHHHHHHHHhccCC
Q 014461          279 ---VAEQFKHLP-GYERIFMTSGLK--GAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       279 ---~~~~~~~~~-~~~~~~~iSA~~--g~gi~~L~~~i~~~l~~~  317 (424)
                         ..+.+.+.. ..+++|-||...  ..++..|.+.|.+.++..
T Consensus       176 R~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  176 RENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             HHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence               223333322 335799999865  466889999999988754

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.34  E-value=3.5e-13  Score=114.50  Aligned_cols=162  Identities=19%  Similarity=0.181  Sum_probs=107.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..++++++|..+|||||++.+++.+-+..-.... ++....-...+...+..+.+|||.|..++.          .+  +
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfD----------aI--t   86 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFD----------AI--T   86 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHH----------HH--H
Confidence            4689999999999999999999965442111110 000000000022345567799999987541          12  2


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..++++|.+.++|+..++..  ....+.+|.+++..... .+|.++|-||+|+.++...-...++.+.+.... ..+.+|
T Consensus        87 kAyyrgaqa~vLVFSTTDr~--SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~-RlyRtS  162 (246)
T KOG4252|consen   87 KAYYRGAQASVLVFSTTDRY--SFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK-RLYRTS  162 (246)
T ss_pred             HHHhccccceEEEEecccHH--HHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhh-hhhhhh
Confidence            24567889999999987643  34556666666544332 489999999999988644333444444444333 378899


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      ++...|+..+|.+|.+.+.
T Consensus       163 vked~NV~~vF~YLaeK~~  181 (246)
T KOG4252|consen  163 VKEDFNVMHVFAYLAEKLT  181 (246)
T ss_pred             hhhhhhhHHHHHHHHHHHH
Confidence            9999999999999988763

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.33  E-value=4.9e-12  Score=115.02  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=76.9

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      .+..++||||+.+-........   .+..++.. ...-++++|+|..+. +.+...+..++-..........|.|+|+||
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGs---IIte~las-s~ptvv~YvvDt~rs-~~p~tFMSNMlYAcSilyktklp~ivvfNK  190 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGS---IITETLAS-SFPTVVVYVVDTPRS-TSPTTFMSNMLYACSILYKTKLPFIVVFNK  190 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCcc---chHhhHhh-cCCeEEEEEecCCcC-CCchhHHHHHHHHHHHHHhccCCeEEEEec
Confidence            4589999999876432111111   12222222 223678999998532 333333333333332222235899999999


Q ss_pred             CCCCCChhhHHHHHHH-------Hh-------------------cCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCC
Q 014461          267 VDLVTKKKDLLKVAEQ-------FK-------------------HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWS  320 (424)
Q Consensus       267 ~Dl~~~~~~~~~~~~~-------~~-------------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~  320 (424)
                      +|+.+.. -..+++..       +.                   +.+.....+-|||.+|.|.++++..+.+.+.+....
T Consensus       191 ~Dv~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  191 TDVSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE  269 (366)
T ss_pred             ccccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence            9998753 22222221       11                   112223589999999999999999999888665544


Q ss_pred             CCCC
Q 014461          321 EDPL  324 (424)
Q Consensus       321 ~~~~  324 (424)
                      |-|.
T Consensus       270 ykp~  273 (366)
T KOG1532|consen  270 YKPE  273 (366)
T ss_pred             hhhH
Confidence            4443

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.31  E-value=1.6e-11  Score=131.75  Aligned_cols=117  Identities=22%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee---------cCC------CCceeeEEEEEE----ecCCccEEEEeCCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV---------SRK------TNTTTHEVLGVM----TKADTQICIFDTPGL  197 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~---------~~~------~~tt~~~~~~~~----~~~~~~i~l~DtpG~  197 (424)
                      .+..+|+++|+.++|||||+++|+...-...         .+.      .+.|.......+    ...+.++.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            3567899999999999999999974221100         000      112222211111    224678999999998


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      .++            ...+...+..+|++++|+|+..+.......++......      +.|.++++||+|+..
T Consensus        98 ~df------------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~------~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDF------------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE------RVKPVLFINKVDRLI  153 (731)
T ss_pred             cCh------------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc------CCCeEEEEECchhhc
Confidence            754            22334456778999999999887766665555544333      256799999999863

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.31  E-value=2e-11  Score=118.24  Aligned_cols=169  Identities=11%  Similarity=0.183  Sum_probs=104.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC----cce-----------eecCCCC---ceeeEEE---EE--Ee---cCCccE
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT----KVA-----------AVSRKTN---TTTHEVL---GV--MT---KADTQI  189 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~----~~~-----------~~~~~~~---tt~~~~~---~~--~~---~~~~~i  189 (424)
                      ....+.|+++|+.|+|||||+|+|.+.    ..+           .+++.+|   +|+++..   ..  +.   .-..++
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            345688999999999999999999987    555           5677777   7766654   11  11   123679


Q ss_pred             EEEeCCCcccCCCCCChhhhh------------------hHHHHHHhhcc-cccEEEEEE-eCC------CCCCCchHHH
Q 014461          190 CIFDTPGLMLNKSGYSHKDVK------------------VRVESAWSAVN-LFEVLMVVF-DVH------RHLTSPDSRV  243 (424)
Q Consensus       190 ~l~DtpG~~~~~~~~~~~~~~------------------~~~~~~~~~~~-~aD~vl~Vv-D~~------~~~~~~~~~~  243 (424)
                      .++||+|+.... .+.+....                  ..--.+...+. .+|+.++|. |.+      ......+..+
T Consensus        94 rlIDcvG~~v~G-alG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        94 RLVDCVGYTVKG-ALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEEECCCcccCC-CccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            999999997532 12211110                  01111334455 789999998 775      2333344455


Q ss_pred             HHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC--CcChHHHHHHHHHhc
Q 014461          244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK--GAGLKALTQYLMEQA  314 (424)
Q Consensus       244 ~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~--g~gi~~L~~~i~~~l  314 (424)
                      ...|++.      ++|+++|+||+|-...  ......+.+...++.+ ++++|+..  ...|..+++.+...+
T Consensus       173 i~eLk~~------~kPfiivlN~~dp~~~--et~~l~~~l~eky~vp-vl~v~c~~l~~~DI~~il~~vL~EF  236 (492)
T TIGR02836       173 IEELKEL------NKPFIILLNSTHPYHP--ETEALRQELEEKYDVP-VLAMDVESMRESDILSVLEEVLYEF  236 (492)
T ss_pred             HHHHHhc------CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCc-eEEEEHHHcCHHHHHHHHHHHHhcC
Confidence            5556654      4899999999994322  2333344555556654 78888743  334455554444333

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=7e-12  Score=106.44  Aligned_cols=163  Identities=20%  Similarity=0.229  Sum_probs=103.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeec----CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.|+++|..|+|||||+.++.........    ....+|.....+.....+..+.|||..|...             .
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~-------------l   82 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES-------------L   82 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH-------------H
Confidence            3577999999999999999987643221111    1222344444555556688899999999753             2


Q ss_pred             HHHHh-hcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHHHHHhcCCC
Q 014461          214 ESAWS-AVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPG  288 (424)
Q Consensus       214 ~~~~~-~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~  288 (424)
                      +..|. .+..++++++++|++++-....  ..+...+..-.   ..+.|+++.+||.|+.+..  +++...... .+..+
T Consensus        83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~---leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~  158 (197)
T KOG0076|consen   83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEK---LEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIP  158 (197)
T ss_pred             HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH---hcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcC
Confidence            23333 3466899999999976322111  12223332211   2258999999999997642  122222221 12221


Q ss_pred             --CCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          289 --YERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       289 --~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                        ..++.||||.+|+||++-++|+...++..
T Consensus       159 ~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  159 RRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             CccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence              22589999999999999999999988655

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=3e-11  Score=117.35  Aligned_cols=156  Identities=17%  Similarity=0.263  Sum_probs=120.0

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcc--eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~--~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .|+..|+--.|||||+.++.|...  .....+-|+|.+...+.+..++..+.|+|.||+.++            +.....
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~------------i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF------------ISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH------------HHHHHh
Confidence            478889999999999999998543  234556688888877778888889999999997533            566667


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC--CCCCeEEEEe
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTS  296 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iS  296 (424)
                      .+...|.+++|+|+++++..+..+.+..+..++.     ...++|+||+|..+. +.+....+++...  +...++|++|
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi-----~~giivltk~D~~d~-~r~e~~i~~Il~~l~l~~~~i~~~s  143 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDLLGI-----KNGIIVLTKADRVDE-ARIEQKIKQILADLSLANAKIFKTS  143 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHhcCC-----CceEEEEeccccccH-HHHHHHHHHHHhhcccccccccccc
Confidence            7788899999999988888877777777777663     236999999999875 2333333333322  2334689999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      +++|+||++|.+.|.+..
T Consensus       144 ~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         144 AKTGRGIEELKNELIDLL  161 (447)
T ss_pred             cccCCCHHHHHHHHHHhh
Confidence            999999999999999877

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.9e-10  Score=116.88  Aligned_cols=219  Identities=19%  Similarity=0.288  Sum_probs=137.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE------------------ecCCccEEEEeCCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM------------------TKADTQICIFDTPGL  197 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~------------------~~~~~~i~l~DtpG~  197 (424)
                      ..+++-++|+|+..+|||-|+..+.+..+- .+...+.|...-..++                  ...-..+.+|||||+
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVq-egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh  550 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQ-EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH  550 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccc-cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence            456788999999999999999999986553 2333333322111111                  112235889999997


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----  272 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-----  272 (424)
                      ..+.+          .++  .....||++|+|+|+.+++..+...-+.+|+..      +.|+|+++||+|..-.     
T Consensus       551 EsFtn----------lRs--rgsslC~~aIlvvdImhGlepqtiESi~lLR~r------ktpFivALNKiDRLYgwk~~p  612 (1064)
T KOG1144|consen  551 ESFTN----------LRS--RGSSLCDLAILVVDIMHGLEPQTIESINLLRMR------KTPFIVALNKIDRLYGWKSCP  612 (1064)
T ss_pred             hhhhh----------hhh--ccccccceEEEEeehhccCCcchhHHHHHHHhc------CCCeEEeehhhhhhcccccCC
Confidence            65532          111  234569999999999988877766666666653      4899999999997532     


Q ss_pred             hhhHH-------------------HHHHHHhcC-------------CCCCeEEEEecCCCcChHHHHHHHHHhccCCCCC
Q 014461          273 KKDLL-------------------KVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWS  320 (424)
Q Consensus       273 ~~~~~-------------------~~~~~~~~~-------------~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~  320 (424)
                      ...+.                   .++.+|.+.             ..+..++|+||.+|+||.+|+-+|++....    
T Consensus       613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk----  688 (1064)
T KOG1144|consen  613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK----  688 (1064)
T ss_pred             CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH----
Confidence            11111                   111122211             122368999999999999999999876521    


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEe--eCCCcccEEeccCCchHHHH
Q 014461          321 EDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLIT--NKLSQRKILVGKNGSKIGRI  398 (424)
Q Consensus       321 ~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~s~k~ivig~~g~~i~~i  398 (424)
                                       ..-+++. ++.     .++..+++.+-.++-...|+..+..  -+++..-+|.|-+|.++..|
T Consensus       689 -----------------~m~~kl~-y~~-----ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtI  745 (1064)
T KOG1144|consen  689 -----------------TMVEKLA-YVD-----EVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTI  745 (1064)
T ss_pred             -----------------HHHHHHh-hhh-----heeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHH
Confidence                             0112222 121     2445555556555534455544432  25788889999999998877


Q ss_pred             HH
Q 014461          399 GV  400 (424)
Q Consensus       399 ~~  400 (424)
                      ..
T Consensus       746 Ra  747 (1064)
T KOG1144|consen  746 RA  747 (1064)
T ss_pred             HH
Confidence            64

>PRK00098 GTPase RsgA; Reviewed

Probab=99.30  E-value=2.6e-12  Score=123.53  Aligned_cols=153  Identities=16%  Similarity=0.092  Sum_probs=90.9

Q ss_pred             CCccCCC-CCCCCCC-CccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014461           55 FRIPTID-DPQNNNA-AKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEE  131 (424)
Q Consensus        55 ar~p~~~-~~k~Dl~-~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  131 (424)
                      ..+|++. .||+||. +.+....|...+...+..+++.++ ++.|...+                 . ..          
T Consensus       110 ~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L-----------------~-~~----------  161 (298)
T PRK00098        110 NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDEL-----------------K-PL----------  161 (298)
T ss_pred             CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH-----------------H-hh----------
Confidence            3345555 6688997 444456788888888888888888 77787666                 1 11          


Q ss_pred             hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-------CceeeEEEEEEecCCccEEEEeCCCcccCCCC-
Q 014461          132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------NTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-  203 (424)
Q Consensus       132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-------~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~-  203 (424)
                           ..+..++++|++|||||||+|+|++.....++..+       +||+......+..   ...++||||+...... 
T Consensus       162 -----l~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~~~~~~  233 (298)
T PRK00098        162 -----LAGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSSFGLHD  233 (298)
T ss_pred             -----ccCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCccCCCC
Confidence                 12456899999999999999999986543333222       3665544433322   2389999999854321 


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~  248 (424)
                      ....++...+.........|-    .-|.+ +..++...+.+.++
T Consensus       234 ~~~~~~~~~f~~~~~~~~~c~----f~~c~-h~~ep~c~v~~a~~  273 (298)
T PRK00098        234 LEAEELEHYFPEFRPLSGDCK----FRNCT-HLHEPGCAVKAAVE  273 (298)
T ss_pred             CCHHHHHHHHHHHHHHhCCCC----CCCCc-CCCCCCChHHHHHH
Confidence            222333333333333222211    12332 44455556655554

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.30  E-value=6.7e-11  Score=98.25  Aligned_cols=167  Identities=14%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ..+..+|+++|.-++|||+++..|+-.....-.....|..+.....+..+   ..++.|.||.|.......+        
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL--------   77 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL--------   77 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh--------
Confidence            35678999999999999999999875544322333333333333333322   3468999999987542111        


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (424)
                         ...++.-+|+.++|++..+.-+... ..+..++....  .....|+++++||+|+.++.....+..+.|+...... 
T Consensus        78 ---prhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-  151 (198)
T KOG3883|consen   78 ---PRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-  151 (198)
T ss_pred             ---hHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhcCHHHHHHHHhhhhee-
Confidence               1234556799999999865322211 12334444422  2224899999999999877666667777887665554 


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .++++|.....+-+.|.++...+..
T Consensus       152 l~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  152 LWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             EEEEEeccchhhhhHHHHHHHhccC
Confidence            8999999999999999999988743

>cd01855 YqeH YqeH

Probab=99.30  E-value=1.8e-11  Score=110.12  Aligned_cols=56  Identities=29%  Similarity=0.374  Sum_probs=45.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcc--------eeecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKV--------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL  197 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~--------~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~  197 (424)
                      ...++++|.+|||||||+|+|.+...        ..++..++||++.....+.   ..+.++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence            46799999999999999999997532        3567888999987765442   25799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=7.2e-11  Score=96.65  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=102.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+++.+|-.++||||++..|.-.+...+-+..|..    ...+++.+..+.+||..|...             ++-.
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFn----vetVtykN~kfNvwdvGGqd~-------------iRpl   77 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN----VETVTYKNVKFNVWDVGGQDK-------------IRPL   77 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCccccccccee----EEEEEeeeeEEeeeeccCchh-------------hhHH
Confidence            35688999999999999999999865543232222222    233567788999999999753             2223


Q ss_pred             Hh-hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CC-Ce
Q 014461          217 WS-AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GY-ER  291 (424)
Q Consensus       217 ~~-~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~-~~  291 (424)
                      |. ++....++|||+|+.+. ...++.-.++-..++.....+.|+++..||.|+..... ..+ ++.+.+..   +. -.
T Consensus        78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqe-i~d~leLe~~r~~~W~  154 (180)
T KOG0071|consen   78 WRHYYTGTQGLIFVVDSADR-DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-PQE-IQDKLELERIRDRNWY  154 (180)
T ss_pred             HHhhccCCceEEEEEeccch-hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHH-HHHHhccccccCCccE
Confidence            32 35677899999998754 22222222222223333333578999999999987521 111 22221111   11 14


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +.|+||.+|.|+.+-+.||.+.+.
T Consensus       155 vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  155 VQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             eeccccccchhHHHHHHHHHhhcc
Confidence            789999999999999999988764

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.29  E-value=9.6e-11  Score=112.93  Aligned_cols=157  Identities=20%  Similarity=0.274  Sum_probs=90.3

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCcee-------e----------E---EEEE------
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------H----------E---VLGV------  181 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~-------~----------~---~~~~------  181 (424)
                      ........|+++|++|+|||||++.+..      .++..+...+..+.       +          .   ....      
T Consensus        29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (300)
T TIGR00750        29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHL  108 (300)
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccc
Confidence            3445678899999999999999999764      22222111111100       0          0   0000      


Q ss_pred             -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461          182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (424)
Q Consensus       182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~  248 (424)
                                   +...+.+++|+||||.....       .        ..+..+|.++++.+...  ..   .+.....
T Consensus       109 ~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e-------~--------~i~~~aD~i~vv~~~~~--~~---el~~~~~  168 (300)
T TIGR00750       109 GGLSQATRELILLLDAAGYDVIIVETVGVGQSE-------V--------DIANMADTFVVVTIPGT--GD---DLQGIKA  168 (300)
T ss_pred             cchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh-------h--------HHHHhhceEEEEecCCc--cH---HHHHHHH
Confidence                         11236789999999976321       0        12345688888765421  11   1111112


Q ss_pred             HhccCCCCCCcEEEEEecCCCCCChhhH--HH----HHHHHhcC-CCC-CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          249 RMGKQAPPKQKRVLCMNKVDLVTKKKDL--LK----VAEQFKHL-PGY-ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~--~~----~~~~~~~~-~~~-~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+.     ..|.++|+||+|+.......  ..    ....+... .+. .+++++||++|.|+++|+++|.+...
T Consensus       169 ~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       169 GLM-----EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHh-----hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            221     36789999999998642111  00    01111111 111 35899999999999999999998753

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.29  E-value=8.2e-12  Score=119.44  Aligned_cols=152  Identities=18%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             ccCCC-CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 014461           57 IPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKE  134 (424)
Q Consensus        57 ~p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  134 (424)
                      +|++. .||+||.+......|..++...++.+++.++ ++.|...+                  ...+            
T Consensus       110 ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L------------------~~~L------------  159 (287)
T cd01854         110 IEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDEL------------------REYL------------  159 (287)
T ss_pred             CCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHH------------------Hhhh------------
Confidence            33344 5588998765556677777778888888888 77776655                  1111            


Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeec-------CCCCceeeEEEEEEecCCccEEEEeCCCcccCC-CCCCh
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK-SGYSH  206 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~-~~~~~  206 (424)
                         ....++++|++|||||||+|.|++.....++       ...+||+......+...   ..++||||+..+. .....
T Consensus       160 ---~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~~  233 (287)
T cd01854         160 ---KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFGLLHIDP  233 (287)
T ss_pred             ---ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccCCccCCH
Confidence               1256899999999999999999986543322       23346666544333222   3799999997654 23333


Q ss_pred             hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH
Q 014461          207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (424)
Q Consensus       207 ~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~  249 (424)
                      .++...+.........|    -.-|++ +..++...+.+.++.
T Consensus       234 ~~~~~~f~~~~~~~~~C----~F~~C~-H~~Ep~Cav~~av~~  271 (287)
T cd01854         234 EELAHYFPEFRELAGQC----KFRDCT-HTNEPGCAVKAAVEA  271 (287)
T ss_pred             HHHHHHhHHHHHHhCCC----CCCCCc-CCCCCCCHHHHHHHc
Confidence            33333333333323222    122554 445666677766653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.28  E-value=3.8e-12  Score=109.74  Aligned_cols=93  Identities=25%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             hhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCCh
Q 014461           74 PTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGK  152 (424)
Q Consensus        74 ~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GK  152 (424)
                      ++|...|+..|+.+++.++ ++.|...+                  +..               .+...++++|++||||
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l------------------~~~---------------l~~k~~vl~G~SGvGK   48 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEEL------------------KEL---------------LKGKTSVLLGQSGVGK   48 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHH------------------HHH---------------HTTSEEEEECSTTSSH
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHH------------------HHH---------------hcCCEEEEECCCCCCH
Confidence            5799999999999999999 78887766                  111               1236789999999999


Q ss_pred             hHHHHhHhCCccee---e----cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461          153 SSIINYMVGTKVAA---V----SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       153 StLin~l~~~~~~~---~----~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      |||+|+|.+.....   +    ....+||+......+.   ....++||||+.....
T Consensus        49 SSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~~~l  102 (161)
T PF03193_consen   49 SSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRSFGL  102 (161)
T ss_dssp             HHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT--G
T ss_pred             HHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCcccc
Confidence            99999999863221   2    2333566665544442   2459999999987643

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PTZ00416 elongation factor 2; Provisional

Probab=99.27  E-value=3.3e-11  Score=130.84  Aligned_cols=116  Identities=20%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCC---------------CceeeEEEEEEecC----------CccEEE
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTKA----------DTQICI  191 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~---------------~tt~~~~~~~~~~~----------~~~i~l  191 (424)
                      .+..+|+++|+.++|||||+++|+...........               +.|.......+.+.          +..++|
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            45669999999999999999999863221111111               12222111112222          567999


Q ss_pred             EeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      +||||+.++            ...+...+..+|++++|+|+..+.......++..+...      +.|+++++||+|+.
T Consensus        97 iDtPG~~~f------------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~------~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDF------------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE------RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhH------------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc------CCCEEEEEEChhhh
Confidence            999998643            33345567889999999999988877776666655543      37899999999997

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.27  E-value=5.6e-11  Score=129.22  Aligned_cols=117  Identities=18%  Similarity=0.202  Sum_probs=79.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCC---------------CceeeEEEEEEec----------------
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTK----------------  184 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~---------------~tt~~~~~~~~~~----------------  184 (424)
                      ..+..+|+++|+.++|||||+++|+...-.......               +.|.......+.+                
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345779999999999999999999853211111111               2222221111222                


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .+..++++||||+.++            .......+..+|++++|+|+..+.......++..+...      +.|+++++
T Consensus        96 ~~~~inliDtPGh~dF------------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~------~~p~i~~i  157 (843)
T PLN00116         96 NEYLINLIDSPGHVDF------------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVLTV  157 (843)
T ss_pred             CceEEEEECCCCHHHH------------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC------CCCEEEEE
Confidence            2567899999998654            33334556778999999999988877766666555543      37899999


Q ss_pred             ecCCCC
Q 014461          265 NKVDLV  270 (424)
Q Consensus       265 NK~Dl~  270 (424)
                      ||+|+.
T Consensus       158 NK~D~~  163 (843)
T PLN00116        158 NKMDRC  163 (843)
T ss_pred             ECCccc
Confidence            999987

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.27  E-value=6.7e-11  Score=128.71  Aligned_cols=145  Identities=17%  Similarity=0.192  Sum_probs=90.7

Q ss_pred             CChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC------------------CccEEEEeCCCcccCCCCCChhhhhh
Q 014461          150 AGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------------DTQICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       150 ~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      ++||||+.+|.+..++. ....+.|.+.-...+...                  -..+.||||||+..+.         .
T Consensus       472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~---------~  541 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT---------S  541 (1049)
T ss_pred             cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH---------H
Confidence            45999999999887752 333444544322222211                  1248999999965431         1


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-------------hHHH
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-------------DLLK  278 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-------------~~~~  278 (424)
                      +.   ...+..+|++++|+|+++++..........+...      +.|+++|+||+|+.....             +...
T Consensus       542 lr---~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~  612 (1049)
T PRK14845        542 LR---KRGGSLADLAVLVVDINEGFKPQTIEAINILRQY------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH  612 (1049)
T ss_pred             HH---HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc------CCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence            11   1235668999999999877665555555555543      378999999999964210             0011


Q ss_pred             HHH-----------HHh-------------cCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          279 VAE-----------QFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       279 ~~~-----------~~~-------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ..+           .+.             +..+..++++|||++|+|+++|.++|...
T Consensus       613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence            111           111             12234479999999999999999988654

>smart00053 DYNc Dynamin, GTPase

Probab=99.27  E-value=3.6e-10  Score=104.49  Aligned_cols=131  Identities=18%  Similarity=0.300  Sum_probs=76.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE----------------------------------------
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE----------------------------------------  177 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~----------------------------------------  177 (424)
                      ....++++|+.|+||||+++++.|..+...+... .|+.+                                        
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~-~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCc-ccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            4568999999999999999999986422111110 01000                                        


Q ss_pred             ------------EEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH-HHHhhcc-cccEEEEEEeCCCCCCCch-HH
Q 014461          178 ------------VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE-SAWSAVN-LFEVLMVVFDVHRHLTSPD-SR  242 (424)
Q Consensus       178 ------------~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~~-~aD~vl~VvD~~~~~~~~~-~~  242 (424)
                                  ...+....-..+.++||||+......-........+. .+..++. ..+++++|+|+...+...+ ..
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                        0001112235689999999964311111112222222 2344455 4569999999976665544 24


Q ss_pred             HHHHHHHhccCCCCCCcEEEEEecCCCCCChhh
Q 014461          243 VIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD  275 (424)
Q Consensus       243 ~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~  275 (424)
                      +.+++...      ..|+++|+||+|..+...+
T Consensus       184 ia~~ld~~------~~rti~ViTK~D~~~~~~~  210 (240)
T smart00053      184 LAKEVDPQ------GERTIGVITKLDLMDEGTD  210 (240)
T ss_pred             HHHHHHHc------CCcEEEEEECCCCCCccHH
Confidence            44444432      3689999999999875433

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.26  E-value=3.9e-10  Score=109.66  Aligned_cols=162  Identities=16%  Similarity=0.246  Sum_probs=107.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      .-.+|+|+.+-..|||||+..|+...-.               ......+.|.-.....+.+.+..++++||||+-++..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            3468999999999999999999853210               0111224444443344678899999999999876642


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHH
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA  280 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~  280 (424)
                               .+++.   +...|.+++++|+..+.-.+...+++---+.      +.+-|+|+||+|....+.  .+.+..
T Consensus        84 ---------EVERv---l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd~vf  145 (603)
T COG1217          84 ---------EVERV---LSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVDEVF  145 (603)
T ss_pred             ---------hhhhh---hhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHHHHH
Confidence                     34444   4456999999999877665555544322222      245688999999987542  222322


Q ss_pred             HHHh------cCCCCCeEEEEecCCCc----------ChHHHHHHHHHhccCCC
Q 014461          281 EQFK------HLPGYERIFMTSGLKGA----------GLKALTQYLMEQAVQRP  318 (424)
Q Consensus       281 ~~~~------~~~~~~~~~~iSA~~g~----------gi~~L~~~i~~~l~~~~  318 (424)
                      +-|.      +...|+ ++..||+.|.          ++..||+.|.++++...
T Consensus       146 DLf~~L~A~deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         146 DLFVELGATDEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             HHHHHhCCChhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            2232      223555 8889998874          57889999999886543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.25  E-value=2.3e-11  Score=130.38  Aligned_cols=117  Identities=19%  Similarity=0.216  Sum_probs=77.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc---------------ceeecCCCCceeeEEE----EEEecCCccEEEEeCCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK---------------VAAVSRKTNTTTHEVL----GVMTKADTQICIFDTPGL  197 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~---------------~~~~~~~~~tt~~~~~----~~~~~~~~~i~l~DtpG~  197 (424)
                      ....+|+++|+.++|||||+++|+...               +.......+.|.....    ..+.+.+.++.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            346899999999999999999997421               0000011223332211    114456788999999998


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ..+.            ..+...+..+|++++|+|+..+.......+...+...      +.|.++++||+|...
T Consensus        97 ~~f~------------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~------~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFG------------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE------NVKPVLFINKVDRLI  152 (720)
T ss_pred             cccH------------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc------CCCEEEEEEChhccc
Confidence            7541            2233456778999999999877666555554444332      367889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.8e-10  Score=101.47  Aligned_cols=161  Identities=16%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ....|.++|..++|||+|+..|..+...    ...|......+.+..+...+.++|.||+..-         ...+...+
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~rl---------R~kl~e~~  103 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSRL---------RRKLLEYL  103 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHHH---------HHHHHHHc
Confidence            3467999999999999999999865321    1122233334445556666899999997532         12222333


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCCh--hhHHH----HHHHHhc---
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKK--KDLLK----VAEQFKH---  285 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~--~~~~~----~~~~~~~---  285 (424)
                      ..-..+-+++||+|+..- ...-..+.+++-..-..   .....|++++.||.|+...+  +.+.+    .+..+..   
T Consensus       104 ~~~~~akaiVFVVDSa~f-~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRs  182 (238)
T KOG0090|consen  104 KHNYSAKAIVFVVDSATF-LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRS  182 (238)
T ss_pred             cccccceeEEEEEecccc-chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            333467899999998532 22222333333222111   23347899999999996542  22221    1111110   


Q ss_pred             ---------------------------CC-CCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          286 ---------------------------LP-GYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       286 ---------------------------~~-~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                                                 .. ....+.+.|+++| +++++.+||.+.
T Consensus       183 a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  183 ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                       00 0114678888888 899999998765

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.23  E-value=1.7e-11  Score=113.72  Aligned_cols=120  Identities=22%  Similarity=0.236  Sum_probs=59.0

Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      .+.++||||+.+..   .+...   .......+  ...-++++++|+.. .......+..++-.......-+.|.|.|+|
T Consensus        92 ~y~l~DtPGQiElf---~~~~~---~~~i~~~L~~~~~~~~v~LvD~~~-~~~~~~f~s~~L~s~s~~~~~~lP~vnvls  164 (238)
T PF03029_consen   92 DYLLFDTPGQIELF---THSDS---GRKIVERLQKNGRLVVVFLVDSSF-CSDPSKFVSSLLLSLSIMLRLELPHVNVLS  164 (238)
T ss_dssp             SEEEEE--SSHHHH---HHSHH---HHHHHHTSSS----EEEEEE-GGG--SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred             cEEEEeCCCCEEEE---Eechh---HHHHHHHHhhhcceEEEEEEeccc-ccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence            68999999998642   11221   22222222  23458899999853 333333322222221111111489999999


Q ss_pred             cCCCCCCh----------------------hhHHHHHHHHhcCCCCC-eEEEEecCCCcChHHHHHHHHHhc
Q 014461          266 KVDLVTKK----------------------KDLLKVAEQFKHLPGYE-RIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       266 K~Dl~~~~----------------------~~~~~~~~~~~~~~~~~-~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      |+|+.+..                      ..+...+..+-..++.. .++++|+.+++|+++|+..|-+.+
T Consensus       165 K~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  165 KIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             ccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            99998721                      00111111222334544 799999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.23  E-value=1.9e-10  Score=117.50  Aligned_cols=133  Identities=17%  Similarity=0.139  Sum_probs=84.3

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ...-..+|+++|.+|+||||++|+|+|.....++.. ++||+ .........+.++.++||||+.+.....  .......
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq--~~neeIL  190 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQ--SKNEKIL  190 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccch--HHHHHHH
Confidence            344568999999999999999999999887666654 45554 3333334567889999999998653211  1111222


Q ss_pred             HHHHhhc--ccccEEEEEEeCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          214 ESAWSAV--NLFEVLMVVFDVHRHLTS-PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       214 ~~~~~~~--~~aD~vl~VvD~~~~~~~-~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ......+  ...|++|+|...+..... .+..+.+.+.++.....- .-+|||+|..|...
T Consensus       191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw-k~tIVVFThgD~lp  250 (763)
T TIGR00993       191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW-FNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH-cCEEEEEeCCccCC
Confidence            2222222  247999999877532222 233455666554432111 35899999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.1e-10  Score=111.96  Aligned_cols=89  Identities=21%  Similarity=0.319  Sum_probs=68.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-----------C-------ccEEEEeCCCcccC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------D-------TQICIFDTPGLMLN  200 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------~-------~~i~l~DtpG~~~~  200 (424)
                      .++++|||.||||||||+|+++... +...++|.||.++..++....           .       .++.|+|.+|+...
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            4689999999999999999999888 668999999998877763321           1       24789999999754


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      .+     .-...-...+..++.+|++++|+|++
T Consensus        81 As-----~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          81 AS-----KGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             cc-----cCCCcchHHHHhhhhcCeEEEEEEec
Confidence            32     01122334456788999999999997

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.21  E-value=7.8e-11  Score=117.46  Aligned_cols=161  Identities=20%  Similarity=0.242  Sum_probs=105.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCccee-ecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+..+|+++|..|+||||||-+|+...+.. +.+. +..+.   ..-++.+..+..++||+.-.+..            
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I---PadvtPe~vpt~ivD~ss~~~~~------------   70 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI---PADVTPENVPTSIVDTSSDSDDR------------   70 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc---CCccCcCcCceEEEecccccchh------------
Confidence            4567899999999999999999999877642 1111 11111   12244566678999998543221            


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCC--chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-----hHHHHHHHHhcC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTS--PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----DLLKVAEQFKHL  286 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~--~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~~~~~~~~  286 (424)
                      ......++.||++++|+++++..+-  -...|+-.+++.... ....|+|+|+||+|......     ....++.++.+.
T Consensus        71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~-~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei  149 (625)
T KOG1707|consen   71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGD-YHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI  149 (625)
T ss_pred             HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCC-CccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH
Confidence            1113457788999999988753222  112344444443321 23589999999999976532     244555555533


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                         ...|+|||++-.++.++|-+-.+.+.
T Consensus       150 ---EtciecSA~~~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  150 ---ETCIECSALTLANVSELFYYAQKAVI  175 (625)
T ss_pred             ---HHHHhhhhhhhhhhHhhhhhhhheee
Confidence               45799999999999999988776653

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.20  E-value=1.4e-10  Score=101.91  Aligned_cols=113  Identities=24%  Similarity=0.366  Sum_probs=66.6

Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE--------------------------------------------
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE--------------------------------------------  177 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~--------------------------------------------  177 (424)
                      |+|+|..++|||||+|+|+|.....++..+.|....                                            
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            789999999999999999997754433332221100                                            


Q ss_pred             -----------EEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHH
Q 014461          178 -----------VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL  246 (424)
Q Consensus       178 -----------~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~  246 (424)
                                 ...........+.|+||||+........        ..+...+..+|++++|++++..+...+.  ..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~--------~~~~~~~~~~d~vi~V~~~~~~~~~~~~--~~l  150 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT--------EITEEYLPKADVVIFVVDANQDLTESDM--EFL  150 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS--------HHHHHHHSTTEEEEEEEETTSTGGGHHH--HHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhH--------HHHHHhhccCCEEEEEeccCcccchHHH--HHH
Confidence                       0001112234588999999975322111        2233445789999999999865544432  222


Q ss_pred             HHHhccCCCCCCcEEEEEecC
Q 014461          247 IERMGKQAPPKQKRVLCMNKV  267 (424)
Q Consensus       247 l~~~~~~~~~~~p~ilV~NK~  267 (424)
                      .+.....   ...+++|+||+
T Consensus       151 ~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  151 KQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             HHHHTTT---CSSEEEEEE-G
T ss_pred             HHHhcCC---CCeEEEEEcCC
Confidence            2222222   23489999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.4e-10  Score=106.38  Aligned_cols=165  Identities=18%  Similarity=0.284  Sum_probs=102.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee-------------------ecCCCCcee---eEEEEEEecC------Ccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-------------------VSRKTNTTT---HEVLGVMTKA------DTQ  188 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-------------------~~~~~~tt~---~~~~~~~~~~------~~~  188 (424)
                      ....+|+.+|+-..|||||..+|.|-....                   +...+.+..   ......+...      -..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            357899999999999999999999832110                   000111110   0000001111      124


Q ss_pred             EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecC
Q 014461          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKV  267 (424)
Q Consensus       189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~  267 (424)
                      +.|+|.||+.-            .+...++...--|+.++|++++.+...+.. +-+-.|+-++.     ..+|+|-||+
T Consensus        88 VSfVDaPGHe~------------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi-----k~iiIvQNKI  150 (415)
T COG5257          88 VSFVDAPGHET------------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI-----KNIIIVQNKI  150 (415)
T ss_pred             EEEeeCCchHH------------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc-----ceEEEEeccc
Confidence            78999999741            233344445556999999999876544432 22233443332     4589999999


Q ss_pred             CCCCChhhHHHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461          268 DLVTKKKDLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       268 Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      |++..+..+ +..+++++.     ....+++|+||..+.|||.|+++|.+.++....
T Consensus       151 DlV~~E~Al-E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         151 DLVSRERAL-ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             ceecHHHHH-HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence            999854322 222232221     122369999999999999999999999976543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.5e-10  Score=109.03  Aligned_cols=164  Identities=19%  Similarity=0.293  Sum_probs=108.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcce----------e----------------------ecCCCCceeeEEEEEEecC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA----------A----------------------VSRKTNTTTHEVLGVMTKA  185 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~----------~----------------------~~~~~~tt~~~~~~~~~~~  185 (424)
                      ..++++.+|.-.-||||||-+|+.....          .                      .....|.|.+.....+.-.
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4578999999999999999999852211          0                      1112356666666666667


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      ..++++.||||+..+.            ++.-.....||+.++++|+..++.++...-.-...-++.     ..+++++|
T Consensus        85 KRkFIiADTPGHeQYT------------RNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGI-----rhvvvAVN  147 (431)
T COG2895          85 KRKFIIADTPGHEQYT------------RNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGI-----RHVVVAVN  147 (431)
T ss_pred             cceEEEecCCcHHHHh------------hhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCC-----cEEEEEEe
Confidence            7889999999987542            233345677899999999987665554432222222331     34899999


Q ss_pred             cCCCCCChh-hHHHHHHH---HhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCC
Q 014461          266 KVDLVTKKK-DLLKVAEQ---FKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLT  325 (424)
Q Consensus       266 K~Dl~~~~~-~~~~~~~~---~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~  325 (424)
                      ||||++-.+ ....+..+   |....++.  .++|+||+.|.|+-.       .-...||+..+..
T Consensus       148 KmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~-------~s~~mpWY~GptL  206 (431)
T COG2895         148 KMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS-------KSENMPWYKGPTL  206 (431)
T ss_pred             eecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc-------cccCCCcccCccH
Confidence            999997543 33333333   33444432  689999999999753       2334577766653

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.17  E-value=1.1e-10  Score=102.67  Aligned_cols=119  Identities=16%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE--ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM--TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ...|+++|++|+|||+|+..|..+....+    .|.........  ...+..+.++|+||+..-+         ..+...
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr---------~~~~~~   69 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT----VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR---------SKLLDE   69 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEEECCGSSTCGTCECEEEETT-HCCC---------HHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCe----eccccCCceEEeecCCCCEEEEEECCCcHHHH---------HHHHHh
Confidence            45699999999999999999997643211    11111111111  1245679999999986432         112222


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchH----HHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDS----RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~----~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      +.....+.+||||+|++. ......    .+.+.+...... ....|+++++||.|+...
T Consensus        70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred             hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence            224667899999999863 111112    233333332211 234899999999999764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13796 GTPase YqeH; Provisional

Probab=99.17  E-value=1.3e-10  Score=114.82  Aligned_cols=123  Identities=22%  Similarity=0.282  Sum_probs=79.9

Q ss_pred             CCcEEEEeCCCC-------------ccCCC-CCCCCCCCcc----ChhhHHHHHHh-cCC---eEEEeec-cccccchhh
Q 014461           45 DCDSVFDSSYFR-------------IPTID-DPQNNNAAKK----QEPTWDEKYRE-RTD---RIVFGEE-AQKGKLRIF  101 (424)
Q Consensus        45 ~~d~vie~~dar-------------~p~~~-~~k~Dl~~~~----~~~~~~~~~~~-~~~---~i~f~~~-~~~~~~~l~  101 (424)
                      .+-+|+++.|..             .|++. .||+||.+++    ....|...+.+ .|.   .+++.++ ++.|..++ 
T Consensus        72 lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL-  150 (365)
T PRK13796         72 LVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDEL-  150 (365)
T ss_pred             EEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHH-
Confidence            456666666644             23333 4588997643    34567665543 343   4677777 77776665 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCceee
Q 014461          102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTH  176 (424)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~tt~~  176 (424)
                                      ++...+.            ....++.++|.+|||||||+|+|++.     +...++..||||+.
T Consensus       151 ----------------~~~I~~~------------~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~  202 (365)
T PRK13796        151 ----------------LEAIEKY------------REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD  202 (365)
T ss_pred             ----------------HHHHHHh------------cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce
Confidence                            1111100            12357999999999999999999853     24457899999998


Q ss_pred             EEEEEEecCCccEEEEeCCCccc
Q 014461          177 EVLGVMTKADTQICIFDTPGLML  199 (424)
Q Consensus       177 ~~~~~~~~~~~~i~l~DtpG~~~  199 (424)
                      .....+.   ....++||||+..
T Consensus       203 ~~~~~l~---~~~~l~DTPGi~~  222 (365)
T PRK13796        203 KIEIPLD---DGSFLYDTPGIIH  222 (365)
T ss_pred             eEEEEcC---CCcEEEECCCccc
Confidence            7654332   2248999999964

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.16  E-value=7.2e-11  Score=106.60  Aligned_cols=162  Identities=22%  Similarity=0.307  Sum_probs=113.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .+|+++|.|.+|||||+..|.|... .+..+.+||..++.+...+.+..+.+.|.||+.+...     +-...-+.....
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegak-----dgkgrg~qviav  133 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK-----DGKGRGKQVIAV  133 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccc-----cCCCCccEEEEE
Confidence            4899999999999999999998654 4778888998888898889999999999999986532     112223334456


Q ss_pred             cccccEEEEEEeCCCCCCCc--------------------------------------h-HHHHHHHHHhccCC------
Q 014461          220 VNLFEVLMVVFDVHRHLTSP--------------------------------------D-SRVIRLIERMGKQA------  254 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~--------------------------------------~-~~~~~~l~~~~~~~------  254 (424)
                      .+.|+++++|+|+..+++..                                      + ..+...+.+.....      
T Consensus       134 artcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr  213 (358)
T KOG1487|consen  134 ARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALR  213 (358)
T ss_pred             eecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeee
Confidence            67889999999986533210                                      0 01111122211100      


Q ss_pred             ---------------CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          255 ---------------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       255 ---------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                                     ....|.+.++||+|-..-        +++.-.+..+..+++||.++.|+++|++.+.+.+.
T Consensus       214 ~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISi--------EELdii~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  214 FDATADDLIDVVEGNRIYVPCIYVLNKIDSISI--------EELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             cCcchhhhhhhhccCceeeeeeeeecccceeee--------eccceeeeccceeecccccccchHHHHHHHhhcch
Confidence                           013688999999997652        11222334557899999999999999999988764

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=4.8e-10  Score=112.00  Aligned_cols=151  Identities=21%  Similarity=0.308  Sum_probs=100.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC--------------------c----ce------eecCCCCceeeEEEEEEecCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT--------------------K----VA------AVSRKTNTTTHEVLGVMTKADT  187 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~--------------------~----~~------~~~~~~~tt~~~~~~~~~~~~~  187 (424)
                      .....+++|+.++|||||+-+|+..                    +    ++      ......|.|.+.....+.....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            4678999999999999999998730                    0    00      0112234555555555666777


Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-------CCchHHHHHHHHHhccCCCCCCcE
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKR  260 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~~~~~l~~~~~~~~~~~p~  260 (424)
                      .+.++|+||+..+            +..+......||+.++|+|++.+.       ..+..+...+++.++.     ..+
T Consensus       256 ~~tliDaPGhkdF------------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi-----~ql  318 (603)
T KOG0458|consen  256 IVTLIDAPGHKDF------------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI-----SQL  318 (603)
T ss_pred             eEEEecCCCcccc------------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc-----ceE
Confidence            8999999997654            344556678899999999997431       1122345556666652     348


Q ss_pred             EEEEecCCCCCChhh----HHHHHHHHh-cCCCCC----eEEEEecCCCcChHH
Q 014461          261 VLCMNKVDLVTKKKD----LLKVAEQFK-HLPGYE----RIFMTSGLKGAGLKA  305 (424)
Q Consensus       261 ilV~NK~Dl~~~~~~----~~~~~~~~~-~~~~~~----~~~~iSA~~g~gi~~  305 (424)
                      ++++||+|+++-.++    +...+..|. +..+|.    .++|||+.+|+|+-.
T Consensus       319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            999999999875432    222233333 333442    589999999999754

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.15  E-value=2e-10  Score=94.21  Aligned_cols=161  Identities=16%  Similarity=0.223  Sum_probs=104.1

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...+.++++++|-.|+||||++..|.+.....+.+..+.......   ..+...+.+||..|...-+             
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~---~~g~f~LnvwDiGGqr~IR-------------   76 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVE---YDGTFHLNVWDIGGQRGIR-------------   76 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEe---ecCcEEEEEEecCCccccc-------------
Confidence            345679999999999999999999998876655555554433322   2345789999999975422             


Q ss_pred             HHH-hhcccccEEEEEEeCCCCCCCc--hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh--cC-CC
Q 014461          215 SAW-SAVNLFEVLMVVFDVHRHLTSP--DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HL-PG  288 (424)
Q Consensus       215 ~~~-~~~~~aD~vl~VvD~~~~~~~~--~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~-~~  288 (424)
                      -.| .++...|.++||+|.++.-...  ...+.+++++...   ...|+.+..||.|+.... ...+....+.  .. ..
T Consensus        77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl---~~vpvlIfankQdlltaa-~~eeia~klnl~~lrdR  152 (185)
T KOG0074|consen   77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL---AEVPVLIFANKQDLLTAA-KVEEIALKLNLAGLRDR  152 (185)
T ss_pred             hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh---hccceeehhhhhHHHhhc-chHHHHHhcchhhhhhc
Confidence            222 2356779999999976532111  1233344444332   247899999999987641 1222211111  00 01


Q ss_pred             CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          289 YERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       289 ~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .-.+-.|||.+++|+.+-.+|+.....
T Consensus       153 swhIq~csals~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  153 SWHIQECSALSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             eEEeeeCccccccCccCcchhhhcCCC
Confidence            114788999999999999999887653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.15  E-value=4.8e-10  Score=102.29  Aligned_cols=56  Identities=25%  Similarity=0.337  Sum_probs=41.7

Q ss_pred             CcEEEEEecCCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          258 QKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       258 ~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      .|.++++||+|+.... .......+.+....+..+++++||++|.|++++++++.+.
T Consensus       149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5689999999997532 2233444444444445579999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=3.5e-10  Score=118.81  Aligned_cols=133  Identities=23%  Similarity=0.333  Sum_probs=91.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC-----cceeecC------------CCCceeeEEEEEEecCC-ccEEEEeCCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSR------------KTNTTTHEVLGVMTKAD-TQICIFDTPGL  197 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~------------~~~tt~~~~~~~~~~~~-~~i~l~DtpG~  197 (424)
                      ..+..+|+++|+..+|||||..+|+-.     +...+.+            ..+.|.......+.+.+ ..++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            345789999999999999999998731     1111111            12344444444466774 99999999999


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL  277 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~  277 (424)
                      .++.         ..+.++   ++.+|++++|+|+..+...+...+++...+.      +.|.++++||+|....  ++.
T Consensus        87 VDFt---------~EV~rs---lrvlDgavvVvdaveGV~~QTEtv~rqa~~~------~vp~i~fiNKmDR~~a--~~~  146 (697)
T COG0480          87 VDFT---------IEVERS---LRVLDGAVVVVDAVEGVEPQTETVWRQADKY------GVPRILFVNKMDRLGA--DFY  146 (697)
T ss_pred             cccH---------HHHHHH---HHhhcceEEEEECCCCeeecHHHHHHHHhhc------CCCeEEEEECcccccc--Chh
Confidence            8763         224444   4556999999999988888777777666654      3889999999999873  344


Q ss_pred             HHHHHHhcCCC
Q 014461          278 KVAEQFKHLPG  288 (424)
Q Consensus       278 ~~~~~~~~~~~  288 (424)
                      ...+.+....+
T Consensus       147 ~~~~~l~~~l~  157 (697)
T COG0480         147 LVVEQLKERLG  157 (697)
T ss_pred             hhHHHHHHHhC
Confidence            44444444433

>TIGR00101 ureG urease accessory protein UreG

Probab=99.14  E-value=5.3e-10  Score=101.11  Aligned_cols=82  Identities=21%  Similarity=0.272  Sum_probs=53.5

Q ss_pred             ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-hhhHHHHHHHHhcCCCCCeEEEEecCCCc
Q 014461          223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGA  301 (424)
Q Consensus       223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSA~~g~  301 (424)
                      +|.++.|+|+........    .....+.      ..-++++||+|+.+. ..+.....+.+....+..+++++||++|+
T Consensus       113 ~~~~i~vvD~~~~~~~~~----~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~  182 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR----KGGPGIT------RSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE  182 (199)
T ss_pred             hCcEEEEEEcchhhhhhh----hhHhHhh------hccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            478999999964322111    1111111      124899999999852 12333334444444455679999999999


Q ss_pred             ChHHHHHHHHHhc
Q 014461          302 GLKALTQYLMEQA  314 (424)
Q Consensus       302 gi~~L~~~i~~~l  314 (424)
                      |+++++++|.+++
T Consensus       183 gi~el~~~i~~~~  195 (199)
T TIGR00101       183 GLDTVIDWIEHYA  195 (199)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.14  E-value=8e-10  Score=101.61  Aligned_cols=167  Identities=17%  Similarity=0.212  Sum_probs=91.3

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE-ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ||+++|+.|+||||+.+.+..+-.+.-....+.|.+.....+ ..+...+.+||.||.......+-.    ...   -..
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~----~~~---~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFN----SQR---EEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHT----CCH---HHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccccc----ccH---HHH
Confidence            689999999999999999987654433334444544433334 355668999999999755322100    001   123


Q ss_pred             cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh---HH----HHHHHHhcCC-CCC
Q 014461          220 VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LL----KVAEQFKHLP-GYE  290 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~---~~----~~~~~~~~~~-~~~  290 (424)
                      ++.++++|||+|+.. ........+...++.+... .++..+.+.++|+|+..+...   ..    ...+...... ...
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~  152 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDI  152 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccce
Confidence            577899999999962 2222222333444433322 246889999999999864211   11    1112222221 113


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .++.+|.-. +.+-+.+..|...+.+
T Consensus       153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  153 TFFLTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             EEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred             EEEeccCcC-cHHHHHHHHHHHHHcc
Confidence            477788766 5777777777777643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.13  E-value=6.4e-10  Score=92.70  Aligned_cols=167  Identities=17%  Similarity=0.243  Sum_probs=112.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      -..+|+++|.+..|||||+-...+.....  ...+++- ......  +...+..+.+||..|..++...++         
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de--~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP---------   87 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDE--EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP---------   87 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHH--HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCc---------
Confidence            47899999999999999999998876531  1111111 111111  222334568999999886644333         


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----hhhHHHHHHHHhcCCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KKDLLKVAEQFKHLPGY  289 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-----~~~~~~~~~~~~~~~~~  289 (424)
                         -...++-+++|++|.+++.+  ...+.+|.++.......-+| |+|++|.|+.-.     ...+......+++..+.
T Consensus        88 ---iac~dsvaIlFmFDLt~r~T--LnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA  161 (205)
T KOG1673|consen   88 ---IACKDSVAILFMFDLTRRST--LNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA  161 (205)
T ss_pred             ---eeecCcEEEEEEEecCchHH--HHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence               13467789999999976433  34566777776655444456 678999986321     12334445566666555


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                      . .|.||+....|++.+|..+...+..-+|.-+
T Consensus       162 s-L~F~Sts~sINv~KIFK~vlAklFnL~~ti~  193 (205)
T KOG1673|consen  162 S-LFFCSTSHSINVQKIFKIVLAKLFNLPWTIP  193 (205)
T ss_pred             c-EEEeeccccccHHHHHHHHHHHHhCCceecc
Confidence            5 8889999999999999999999888887544

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.5e-10  Score=109.33  Aligned_cols=116  Identities=18%  Similarity=0.279  Sum_probs=82.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHh--CCcc-------------eeecCC------CCceeeEEEEEEecCCccEEEEeCCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV--GTKV-------------AAVSRK------TNTTTHEVLGVMTKADTQICIFDTPG  196 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~--~~~~-------------~~~~~~------~~tt~~~~~~~~~~~~~~i~l~DtpG  196 (424)
                      +....+|+.+|.+|||||...|+  |+.+             ...|+.      .|....+....+.+.++.++++||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            44668999999999999999876  2111             011221      23333333444778899999999999


Q ss_pred             cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      +.++.            +.++..+..+|.+++|+|+..++......+.+.++..      ++|++-.+||+|...
T Consensus        91 HeDFS------------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR------~iPI~TFiNKlDR~~  147 (528)
T COG4108          91 HEDFS------------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR------DIPIFTFINKLDREG  147 (528)
T ss_pred             ccccc------------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhc------CCceEEEeecccccc
Confidence            98763            3455666778999999999888766655555555432      589999999999875

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=2.5e-09  Score=100.36  Aligned_cols=161  Identities=19%  Similarity=0.353  Sum_probs=99.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCC-----ceeeEEEEEEe---------cCCccEEEEeCCCcccCCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTN-----TTTHEVLGVMT---------KADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~-----tt~~~~~~~~~---------~~~~~i~l~DtpG~~~~~~  202 (424)
                      ...+++++|+-.+|||||..+|..-. .+.....|+     .|.+.-...+.         .+.-++.++|+||+..   
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---   82 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---   82 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence            35889999999999999999997421 111222222     22221111111         1223579999999742   


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHH
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKV  279 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~  279 (424)
                               .++..+....-.|+.++|+|+..+...+..+.+-.=+.+.      ...++|+||+|...+.   ..+.+.
T Consensus        83 ---------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~  147 (522)
T KOG0461|consen   83 ---------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKS  147 (522)
T ss_pred             ---------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHH
Confidence                     2444445555679999999998776655444332222222      3478999999987652   233333


Q ss_pred             HHHHhc------CCCCCeEEEEecCCC----cChHHHHHHHHHhccC
Q 014461          280 AEQFKH------LPGYERIFMTSGLKG----AGLKALTQYLMEQAVQ  316 (424)
Q Consensus       280 ~~~~~~------~~~~~~~~~iSA~~g----~gi~~L~~~i~~~l~~  316 (424)
                      ...+++      ..+..+++++||+.|    +++.+|.+.|.+.+..
T Consensus       148 ~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  148 AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            333322      123347999999999    8899999999887754

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=3e-10  Score=93.49  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=100.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..++.++|-.|+||+|++-++--.++...-+.++.....    +.+.+-++.+||..|...-.+         ..+.  
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~----v~yKNLk~~vwdLggqtSirP---------yWRc--   81 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRP---------YWRC--   81 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccc----cccccccceeeEccCcccccH---------HHHH--
Confidence            5688999999999999998887655554333333332222    345777889999999764211         1222  


Q ss_pred             hhcccccEEEEEEeCCCCCCC--chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH-----HHHHhcCCCCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTS--PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-----AEQFKHLPGYE  290 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~--~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-----~~~~~~~~~~~  290 (424)
                       ++.+.|.+|+|+|.++...-  ....+..+|.+-...   +..++++.||.|..... ...+.     ++.+++..  -
T Consensus        82 -Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq---~a~llv~anKqD~~~~~-t~~E~~~~L~l~~Lk~r~--~  154 (182)
T KOG0072|consen   82 -YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ---HAKLLVFANKQDYSGAL-TRSEVLKMLGLQKLKDRI--W  154 (182)
T ss_pred             -HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc---CceEEEEeccccchhhh-hHHHHHHHhChHHHhhhe--e
Confidence             35678999999999754222  222444445443322   35688999999986531 11111     12222221  2


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhcc
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+|..||.+|+|+++.++||.+.+.
T Consensus       155 ~Iv~tSA~kg~Gld~~~DWL~~~l~  179 (182)
T KOG0072|consen  155 QIVKTSAVKGEGLDPAMDWLQRPLK  179 (182)
T ss_pred             EEEeeccccccCCcHHHHHHHHHHh
Confidence            5899999999999999999998764

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.08  E-value=4.5e-10  Score=102.79  Aligned_cols=170  Identities=19%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVR  212 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~  212 (424)
                      ..+...+++.|.+|+|||||+|.++..+...  ...+++.|+...   ...-+..++++|.||.....-+.. ..+...+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in---~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAIN---HFHVGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeee---eeeccceEEEEecCCcccccCCccCcchHhHh
Confidence            3456889999999999999999998755322  222556555433   223466789999999543221111 1233333


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-----hHHHHHHHHhcCC
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----DLLKVAEQFKHLP  287 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~~~~~~~~~  287 (424)
                      ...++..-+.-=.+++++|++.++...+....+|+.+.+      .|+.+|+||||......     ........+....
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~------VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENN------VPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcC------CCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            344433333445677888999888888888889998864      89999999999864311     0001111111111


Q ss_pred             -----CCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          288 -----GYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       288 -----~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                           ...+++.+|+.++.|+++|+-.+.+..
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhhhh
Confidence                 112467799999999999887776543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.08  E-value=9.9e-10  Score=108.43  Aligned_cols=107  Identities=22%  Similarity=0.307  Sum_probs=72.8

Q ss_pred             CCCCCCCCcc----ChhhHHH-HHHhcCC---eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 014461           62 DPQNNNAAKK----QEPTWDE-KYRERTD---RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV  132 (424)
Q Consensus        62 ~~k~Dl~~~~----~~~~~~~-~~~~~~~---~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  132 (424)
                      .||+||.++.    ....|.. ++...+.   .+++.|+ ++.|..++                 ++...+.        
T Consensus        97 ~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL-----------------~~~l~~~--------  151 (360)
T TIGR03597        97 GNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDEL-----------------LDKIKKA--------  151 (360)
T ss_pred             EEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHH-----------------HHHHHHH--------
Confidence            4588997654    3455654 3444553   3677788 77787766                 1111100        


Q ss_pred             hhhcccceEEEEEecCCCChhHHHHhHhCCc-----ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                          ....+++++|.+|||||||+|+|++..     ...++..|+||+......+   +..+.++||||+...
T Consensus       152 ----~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       152 ----RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS  217 (360)
T ss_pred             ----hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence                013689999999999999999999743     4568899999988664433   334689999999754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.08  E-value=8.3e-10  Score=96.59  Aligned_cols=55  Identities=29%  Similarity=0.350  Sum_probs=44.0

Q ss_pred             EEEEEecCCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          260 RVLCMNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       260 ~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      -++|+||.|+.+.- .++....+..++..+..+++.+|+++|+|++++++|+....
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            58999999997642 34455566666677777899999999999999999997654

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=5.9e-10  Score=94.10  Aligned_cols=157  Identities=15%  Similarity=0.207  Sum_probs=97.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+++++|-.|+|||||++.|...+...--+.-    +++...+..++..+..+|..|...             .++.
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTl----HPTSE~l~Ig~m~ftt~DLGGH~q-------------Arr~   80 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTL----HPTSEELSIGGMTFTTFDLGGHLQ-------------ARRV   80 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCc----CCChHHheecCceEEEEccccHHH-------------HHHH
Confidence            46789999999999999999999887765433333    333334557888899999999742             2222


Q ss_pred             H-hhcccccEEEEEEeCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHH--HHHhcC---
Q 014461          217 W-SAVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVA--EQFKHL---  286 (424)
Q Consensus       217 ~-~~~~~aD~vl~VvD~~~~~~~~~~--~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~--~~~~~~---  286 (424)
                      | ..+..+|.+++.+|+-+.-...+.  +....+....   ....|+++.+||+|....-  +++....  ..+...   
T Consensus        81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~  157 (193)
T KOG0077|consen   81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGK  157 (193)
T ss_pred             HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccc
Confidence            2 346778999999999653222221  1111111110   1258999999999998642  1111111  111110   


Q ss_pred             -----CC--CCeEEEEecCCCcChHHHHHHHHHh
Q 014461          287 -----PG--YERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       287 -----~~--~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                           .+  ...+|.||...+.|..+-+.|+...
T Consensus       158 v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  158 VNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             ccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence                 01  1158999999888877777766543

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=5.1e-09  Score=90.46  Aligned_cols=162  Identities=17%  Similarity=0.246  Sum_probs=102.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeec-CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..++++++|..|.||||++++.+.+.+.... ...|...+.....-..+...+..|||.|...... +.  +        
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg-lr--d--------   77 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG-LR--D--------   77 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecc-cc--c--------
Confidence            4788999999999999999998877765322 1222223332222222335789999999875422 11  0        


Q ss_pred             HhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ..+-...+.++++|++...+... ..+..-+.+..    .++|+++.+||.|.....  .....-.+....+. .++++
T Consensus        78 -gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl-~y~~i  149 (216)
T KOG0096|consen   78 -GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNL-QYYEI  149 (216)
T ss_pred             -ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh----cCCCeeeeccceeccccc--cccccceeeecccc-eeEEe
Confidence             12234568888999976544322 22333233322    248999999999986542  11111112222233 48999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ||+++.|.+.-|-|+...+...|
T Consensus       150 Saksn~NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  150 SAKSNYNFERPFLWLARKLTGDP  172 (216)
T ss_pred             ecccccccccchHHHhhhhcCCC
Confidence            99999999999999999997765

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.2e-08  Score=94.08  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=105.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC----------cceeec-----CCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT----------KVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~----------~~~~~~-----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ....+|+.+|+-+.|||||..++...          .+..+.     ...+.|..+....+...+..+..+|+||+.++ 
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY-   88 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY-   88 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH-
Confidence            45689999999999999999998741          111122     22356666665567777888999999998643 


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHH---
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL---  277 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~---  277 (424)
                                 +++.+....+.|..|+|+.++++.-.+...-.-+.++++      .| +++++||+|+.++.+.+.   
T Consensus        89 -----------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvG------vp~ivvflnK~Dmvdd~ellelVe  151 (394)
T COG0050          89 -----------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG------VPYIVVFLNKVDMVDDEELLELVE  151 (394)
T ss_pred             -----------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcC------CcEEEEEEecccccCcHHHHHHHH
Confidence                       444555556779999999998775554433222333443      43 677899999998633221   


Q ss_pred             HHHHHHhcCCCCC----eEEEEecCC-Cc-------ChHHHHHHHHHhccC
Q 014461          278 KVAEQFKHLPGYE----RIFMTSGLK-GA-------GLKALTQYLMEQAVQ  316 (424)
Q Consensus       278 ~~~~~~~~~~~~~----~~~~iSA~~-g~-------gi~~L~~~i~~~l~~  316 (424)
                      ..+.++...++|+    +++.-||+. .+       .|.+|++++-++++.
T Consensus       152 mEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         152 MEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             HHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence            2234455556664    566667653 22       257777777777654

>PRK01889 GTPase RsgA; Reviewed

Probab=98.96  E-value=2.8e-10  Score=112.04  Aligned_cols=130  Identities=17%  Similarity=0.120  Sum_probs=81.4

Q ss_pred             hhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCccC-hhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHH
Q 014461           32 SAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQ-EPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEER  108 (424)
Q Consensus        32 ~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~~-~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~  108 (424)
                      +..|.++.  .. ..++++.++++.++.+. .||+||++... ...|...+ ..++.|++.++ ++.|...+        
T Consensus       121 s~~p~~~~--~~-ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~~L--------  188 (356)
T PRK01889        121 SLNHDFNL--RR-IERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLDVL--------  188 (356)
T ss_pred             ecCCCCCh--hH-HHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHHHH--------
Confidence            33444444  33 45677777777777777 88999987521 22344444 56788888888 77777665        


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEE
Q 014461          109 KHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGV  181 (424)
Q Consensus       109 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~  181 (424)
                                ...+              ..+..++++|.+|+|||||+|.|.+......+.       ..++|+......
T Consensus       189 ----------~~~L--------------~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~  244 (356)
T PRK01889        189 ----------AAWL--------------SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP  244 (356)
T ss_pred             ----------HHHh--------------hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE
Confidence                      1111              134579999999999999999999754322211       123444433333


Q ss_pred             EecCCccEEEEeCCCcccC
Q 014461          182 MTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~  200 (424)
                      +..+   ..++||||+..+
T Consensus       245 l~~~---~~l~DtpG~~~~  260 (356)
T PRK01889        245 LPSG---GLLIDTPGMREL  260 (356)
T ss_pred             ecCC---CeecCCCchhhh
Confidence            3322   268899998654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.93  E-value=1.4e-08  Score=96.50  Aligned_cols=127  Identities=16%  Similarity=0.250  Sum_probs=68.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecC--------C-CCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCC-h
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------K-TNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS-H  206 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~--------~-~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~-~  206 (424)
                      .++|+++|.+|+|||||+|.|++........        . ...........+..++.  .+.++||||+........ .
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            5789999999999999999999865443220        1 11112222222333333  478999999875432110 0


Q ss_pred             hhh----hhHHHHHHhh----------cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          207 KDV----KVRVESAWSA----------VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       207 ~~~----~~~~~~~~~~----------~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ..+    ...+...+..          -...|++||+++++. ++...+..   .++++..    ..++|-|+.|+|...
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~---~mk~Ls~----~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE---FMKRLSK----RVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH---HHHHHTT----TSEEEEEESTGGGS-
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH---HHHHhcc----cccEEeEEecccccC
Confidence            111    1112222211          134599999999863 34433433   4455442    367999999999987


Q ss_pred             C
Q 014461          272 K  272 (424)
Q Consensus       272 ~  272 (424)
                      .
T Consensus       157 ~  157 (281)
T PF00735_consen  157 P  157 (281)
T ss_dssp             H
T ss_pred             H
Confidence            4

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01858 NGP_1 NGP-1

Probab=98.92  E-value=7.1e-09  Score=90.22  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      .|..+..+|++++|+|++.+....+..+.+.+...    ..+.|+++|+||+|+.+. .........+.+...+. ++++
T Consensus         2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~-~~~~~~~~~~~~~~~~~-~~~i   75 (157)
T cd01858           2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE----KPHKHLIFVLNKCDLVPT-WVTARWVKILSKEYPTI-AFHA   75 (157)
T ss_pred             hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc----cCCCCEEEEEEchhcCCH-HHHHHHHHHHhcCCcEE-EEEe
Confidence            36678889999999999877666566676766642    124789999999999764 34555666776655444 6899


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||++|.|+++|++.|.+.+
T Consensus        76 Sa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          76 SINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eccccccHHHHHHHHHHHH
Confidence            9999999999999998764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.77  E-value=1.5e-09  Score=93.32  Aligned_cols=161  Identities=22%  Similarity=0.212  Sum_probs=107.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCc-eeeEEEEEEecCCc---cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-TTHEVLGVMTKADT---QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~t-t~~~~~~~~~~~~~---~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .++.|+|.-|+|||+++.+.+...+..  .+..| ..+....++.+++.   ++.|||..|+..+....           
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~--~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt-----------   92 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSY--HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT-----------   92 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHH--HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE-----------
Confidence            678899999999999999987543321  00000 00111222334443   45799999987553211           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChh-hHHHHHHHHhcCCCCC
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPGYE  290 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~  290 (424)
                       .-.++.+.+..+|||.++..+.  +.+..|..++..    ......|+++..||||..+... .--.....+.+.+++.
T Consensus        93 -rVyykea~~~~iVfdvt~s~tf--e~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~  169 (229)
T KOG4423|consen   93 -RVYYKEAHGAFIVFDVTRSLTF--EPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE  169 (229)
T ss_pred             -EEEecCCcceEEEEEccccccc--cHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence             1235778899999999875544  344555555433    2223378999999999976421 1124567788889999


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ..+++|+|.+.+++|....+.+.+.-
T Consensus       170 gwtets~Kenkni~Ea~r~lVe~~lv  195 (229)
T KOG4423|consen  170 GWTETSAKENKNIPEAQRELVEKILV  195 (229)
T ss_pred             ceeeeccccccChhHHHHHHHHHHHh
Confidence            99999999999999999999887643

>cd01859 MJ1464 MJ1464

Probab=98.75  E-value=7.1e-08  Score=83.73  Aligned_cols=88  Identities=24%  Similarity=0.295  Sum_probs=60.9

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..+|++++|+|++++....+..+...+...      +.|+++|+||+|+... ....... .+....+. +++++||++
T Consensus        10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~------~~p~iiv~NK~Dl~~~-~~~~~~~-~~~~~~~~-~~~~iSa~~   80 (156)
T cd01859          10 IKESDVVLEVLDARDPELTRSRKLERYVLEL------GKKLLIVLNKADLVPK-EVLEKWK-SIKESEGI-PVVYVSAKE   80 (156)
T ss_pred             HhhCCEEEEEeeCCCCcccCCHHHHHHHHhC------CCcEEEEEEhHHhCCH-HHHHHHH-HHHHhCCC-cEEEEEccc
Confidence            4468999999999765554444444443321      3789999999999753 2222221 23333333 489999999


Q ss_pred             CcChHHHHHHHHHhccC
Q 014461          300 GAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~~  316 (424)
                      |.|+++|++.|.+.++.
T Consensus        81 ~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          81 RLGTKILRRTIKELAKI   97 (156)
T ss_pred             cccHHHHHHHHHHHHhh
Confidence            99999999999988864

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.75  E-value=2e-08  Score=97.98  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcccCCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS  202 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~~  202 (424)
                      .+++++|.||+|||||+|+|++.....+.++|.||..+..+++...+                 ..+.++|.||+....+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            68999999999999999999998874678899999888887765544                 3588999999976421


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      .-     ...-...+..++.+|++++|+|+.
T Consensus        83 ~g-----~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KG-----EGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cc-----cCcchHHHHHHHhCCEEEEEEeCC
Confidence            10     111234456678899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=5.6e-08  Score=97.66  Aligned_cols=158  Identities=22%  Similarity=0.266  Sum_probs=100.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-----ceee------------cCCCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAV------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~------------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~  199 (424)
                      .+..+|++.-+-.+||||+.++++...     ...+            ....+.|.......+.+.+..+++|||||+.+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            356789999999999999999987311     1111            11123444444444667789999999999987


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV  279 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~  279 (424)
                      +.         ..+++++..+   |..++|+|+..+...+...+...+.+.+      .|.+..+||+|....  .....
T Consensus       117 FT---------~EVeRALrVl---DGaVlvl~aV~GVqsQt~tV~rQ~~ry~------vP~i~FiNKmDRmGa--~~~~~  176 (721)
T KOG0465|consen  117 FT---------FEVERALRVL---DGAVLVLDAVAGVESQTETVWRQMKRYN------VPRICFINKMDRMGA--SPFRT  176 (721)
T ss_pred             EE---------EEehhhhhhc---cCeEEEEEcccceehhhHHHHHHHHhcC------CCeEEEEehhhhcCC--ChHHH
Confidence            63         2355555554   8899999998887777777777776654      899999999999874  33344


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCcChHHHHHHHHHhc
Q 014461          280 AEQFKHLPGY-ERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       280 ~~~~~~~~~~-~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++.+...... +.++.+-.....++..+.+.+...+
T Consensus       177 l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~ka  212 (721)
T KOG0465|consen  177 LNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKA  212 (721)
T ss_pred             HHHHHhhcCCchheeEccccccccchhHHhhhhceE
Confidence            4444433322 2233332223335555555555444

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.71  E-value=2.6e-07  Score=86.37  Aligned_cols=175  Identities=15%  Similarity=0.177  Sum_probs=102.3

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec----CCccEEEEeCCCcccCCCCCChhhh
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK----ADTQICIFDTPGLMLNKSGYSHKDV  209 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~  209 (424)
                      ...+.+.+|.++|..++|||||+..|-|....    +.+.......-.+..    +-.++.+|-..|-.-.         
T Consensus        47 sklpsgk~VlvlGdn~sGKtsLi~klqg~e~~----KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h---------  113 (473)
T KOG3905|consen   47 SKLPSGKNVLVLGDNGSGKTSLISKLQGSETV----KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYH---------  113 (473)
T ss_pred             ccCCCCCeEEEEccCCCchhHHHHHhhccccc----CCCCCcceEEEecccccchhhhhcceEEecCchhh---------
Confidence            45667889999999999999999999886532    122111111111111    1123444444443211         


Q ss_pred             hhHHHHHHhhcccc-cEEEEEEeCCCCCCCchH--HHHHHHHH-------------------------hcc---CC----
Q 014461          210 KVRVESAWSAVNLF-EVLMVVFDVHRHLTSPDS--RVIRLIER-------------------------MGK---QA----  254 (424)
Q Consensus       210 ~~~~~~~~~~~~~a-D~vl~VvD~~~~~~~~~~--~~~~~l~~-------------------------~~~---~~----  254 (424)
                      ...++.++.+..-+ -++|+++|.+++++..+.  .|...+.+                         +..   ..    
T Consensus       114 ~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp  193 (473)
T KOG3905|consen  114 KGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSP  193 (473)
T ss_pred             hhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence            11233333333333 467788888876543221  22221111                         000   00    


Q ss_pred             --------------------------CCCCcEEEEEecCCCCC----Ch-------hhHHHHHHHHhcCCCCCeEEEEec
Q 014461          255 --------------------------PPKQKRVLCMNKVDLVT----KK-------KDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       255 --------------------------~~~~p~ilV~NK~Dl~~----~~-------~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                                                .-++|+++|++|||...    ..       +-+...++.|+-.+|.. .|.+|+
T Consensus       194 ~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSv  272 (473)
T KOG3905|consen  194 QRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSV  272 (473)
T ss_pred             ccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeec
Confidence                                      01589999999999842    11       12344566777777776 888999


Q ss_pred             CCCcChHHHHHHHHHhccCCCCCCC
Q 014461          298 LKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                      |...|++-|..+|.......++..+
T Consensus       273 KE~KNidllyKYivhr~yG~~fttp  297 (473)
T KOG3905|consen  273 KETKNIDLLYKYIVHRSYGFPFTTP  297 (473)
T ss_pred             ccccchHHHHHHHHHHhcCcccCCc
Confidence            9999999999999999876665443

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=2.3e-07  Score=88.10  Aligned_cols=124  Identities=23%  Similarity=0.403  Sum_probs=76.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--------------------------------
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--------------------------------  185 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--------------------------------  185 (424)
                      ...-|+++|+-..||||+++.|+...+.-....|..|++....++..+                                
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            456799999999999999999998776533333333333222221110                                


Q ss_pred             ---------CccEEEEeCCCcccCCC-----CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc
Q 014461          186 ---------DTQICIFDTPGLMLNKS-----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG  251 (424)
Q Consensus       186 ---------~~~i~l~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~  251 (424)
                               =..+.++||||+.+...     ++.+.....    .  .+..+|.|++++|+. .+ +-..+..+.+..+.
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~----W--FaeR~D~IiLlfD~h-KL-DIsdEf~~vi~aLk  208 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLE----W--FAERVDRIILLFDAH-KL-DISDEFKRVIDALK  208 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHH----H--HHHhccEEEEEechh-hc-cccHHHHHHHHHhh
Confidence                     02478999999975432     222222111    1  246789999999984 22 22234445555554


Q ss_pred             cCCCCCCcEEEEEecCCCCCC
Q 014461          252 KQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       252 ~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ...   -.+-+|+||.|.++.
T Consensus       209 G~E---dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  209 GHE---DKIRVVLNKADQVDT  226 (532)
T ss_pred             CCc---ceeEEEeccccccCH
Confidence            332   347899999999885

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=7.7e-08  Score=92.39  Aligned_cols=137  Identities=20%  Similarity=0.241  Sum_probs=91.5

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCc-----------------ceeecCCCCceeeEEEEEEecCCccEEEEeCCC
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----------------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG  196 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~-----------------~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG  196 (424)
                      +...+..+|+++.+-.+||||...+++.-.                 +.......+.|.......+++.|.++.++||||
T Consensus        32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg  111 (753)
T KOG0464|consen   32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG  111 (753)
T ss_pred             CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence            344456789999999999999999987311                 111222335555555556889999999999999


Q ss_pred             cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH
Q 014461          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL  276 (424)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~  276 (424)
                      ..++.         -.+++.+..+   |.++.|+|++.+...+...++..-.      ..++|.+..+||+|...  ...
T Consensus       112 hvdf~---------leverclrvl---dgavav~dasagve~qtltvwrqad------k~~ip~~~finkmdk~~--anf  171 (753)
T KOG0464|consen  112 HVDFR---------LEVERCLRVL---DGAVAVFDASAGVEAQTLTVWRQAD------KFKIPAHCFINKMDKLA--ANF  171 (753)
T ss_pred             cceEE---------EEHHHHHHHh---cCeEEEEeccCCcccceeeeehhcc------ccCCchhhhhhhhhhhh--hhh
Confidence            98763         2244544444   9999999998776654433332222      23588999999999876  344


Q ss_pred             HHHHHHHhcCCCCC
Q 014461          277 LKVAEQFKHLPGYE  290 (424)
Q Consensus       277 ~~~~~~~~~~~~~~  290 (424)
                      ...++.+.+..+..
T Consensus       172 e~avdsi~ekl~ak  185 (753)
T KOG0464|consen  172 ENAVDSIEEKLGAK  185 (753)
T ss_pred             hhHHHHHHHHhCCc
Confidence            44555555554443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.66  E-value=6.9e-07  Score=85.55  Aligned_cols=129  Identities=12%  Similarity=0.202  Sum_probs=75.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee----cCCC-----CceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV----SRKT-----NTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS  205 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~----~~~~-----~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~  205 (424)
                      ...++|+++|++|.|||||+|.|++......    ...+     ..........+..++.  ++.++||||+.+.-....
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5679999999999999999999998643211    1111     1112222223444444  478999999987643211


Q ss_pred             h-hh----hhhHHHHHHhh-----------cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCC
Q 014461          206 H-KD----VKVRVESAWSA-----------VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD  268 (424)
Q Consensus       206 ~-~~----~~~~~~~~~~~-----------~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~D  268 (424)
                      - ..    +...+..++..           =...+++||.+..+. ++...+...+..+..       .+.+|-|+.|.|
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-------~vNlIPVI~KaD  173 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-------RVNLIPVIAKAD  173 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-------ccCeeeeeeccc
Confidence            1 11    11222222211           134589999998753 344444343333332       245888999999


Q ss_pred             CCCC
Q 014461          269 LVTK  272 (424)
Q Consensus       269 l~~~  272 (424)
                      ....
T Consensus       174 ~lT~  177 (373)
T COG5019         174 TLTD  177 (373)
T ss_pred             cCCH
Confidence            8875

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.66  E-value=9.6e-08  Score=88.07  Aligned_cols=91  Identities=20%  Similarity=0.186  Sum_probs=62.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC--cceeecCCCCceeeEEEEEEec---CCccEEEEeCCCcccCCCCC-Chhhhhh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGY-SHKDVKV  211 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~--~~~~~~~~~~tt~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~-~~~~~~~  211 (424)
                      +...|+|+|++++|||||+|.|++.  .+........+|+.........   .+..++++||||+....... .+    .
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~----~   81 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFED----D   81 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhh----h
Confidence            4567899999999999999999998  6765556677777665554433   35789999999998654322 11    1


Q ss_pred             HHHHHHhhcccccEEEEEEeCC
Q 014461          212 RVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      ....++..+ -+|++|+..+..
T Consensus        82 ~~~~~l~~l-lss~~i~n~~~~  102 (224)
T cd01851          82 ARLFALATL-LSSVLIYNSWET  102 (224)
T ss_pred             hHHHHHHHH-HhCEEEEeccCc
Confidence            111111111 378999888874

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.65  E-value=3.2e-07  Score=87.66  Aligned_cols=163  Identities=21%  Similarity=0.313  Sum_probs=97.9

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCccee----------e---cCCCCceeeEEEEEEec-----------------
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA----------V---SRKTNTTTHEVLGVMTK-----------------  184 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~----------~---~~~~~tt~~~~~~~~~~-----------------  184 (424)
                      ..+....|+..|+-++|||||+-+|...+...          +   .-..+.|.+....++-+                 
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            34567889999999999999999987432110          0   00011222222222111                 


Q ss_pred             ------CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC
Q 014461          185 ------ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (424)
Q Consensus       185 ------~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~  256 (424)
                            .+.-+.|+||.|+...            ++.++..+  ...|..++++-++++.+....+-+-.+-.+      
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpw------------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~------  254 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPW------------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAM------  254 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHH------------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhh------
Confidence                  1234779999997532            33333332  567999999999888766554433333332      


Q ss_pred             CCcEEEEEecCCCCCChhhHHHHHHHHh-------c--------------------CCCCCeEEEEecCCCcChHHHHHH
Q 014461          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFK-------H--------------------LPGYERIFMTSGLKGAGLKALTQY  309 (424)
Q Consensus       257 ~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-------~--------------------~~~~~~~~~iSA~~g~gi~~L~~~  309 (424)
                      ..|+|+|++|+|+..+ +.+....+++.       .                    ..+..++|.+|+.+|+|++-|.+.
T Consensus       255 ~lPviVvvTK~D~~~d-dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~  333 (527)
T COG5258         255 ELPVIVVVTKIDMVPD-DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF  333 (527)
T ss_pred             cCCEEEEEEecccCcH-HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence            4799999999999875 22222222211       0                    112347999999999999866554


Q ss_pred             HHHhccCC
Q 014461          310 LMEQAVQR  317 (424)
Q Consensus       310 i~~~l~~~  317 (424)
                      + ..+|..
T Consensus       334 f-~~Lp~r  340 (527)
T COG5258         334 F-LLLPKR  340 (527)
T ss_pred             H-HhCCcc
Confidence            4 455543

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.6e-07  Score=95.12  Aligned_cols=117  Identities=21%  Similarity=0.348  Sum_probs=75.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCC----------------CCceeeE--EEEEEe---cCCccEEEEeC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------------TNTTTHE--VLGVMT---KADTQICIFDT  194 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~----------------~~tt~~~--~~~~~~---~~~~~i~l~Dt  194 (424)
                      .....+|+++|+-.+|||+|+..|........+..                .+++...  ..-.+.   ...+-++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34568899999999999999999987543221110                0111111  111111   22334889999


Q ss_pred             CCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       195 pG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      ||+..+            ...+...++.+|++++|+|+..+..-....+.+..-+   .   +.|+++|+||+|..
T Consensus       205 PGHVnF------------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~---~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNF------------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---N---RLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccc------------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---c---cCcEEEEEehhHHH
Confidence            999865            2233345677899999999988776655544332222   1   47899999999963

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.64  E-value=1.5e-06  Score=78.12  Aligned_cols=126  Identities=17%  Similarity=0.255  Sum_probs=74.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceee-------cCCCCceeeEE-EEEEecCCc--cEEEEeCCCcccCCCCCCh-h
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-------SRKTNTTTHEV-LGVMTKADT--QICIFDTPGLMLNKSGYSH-K  207 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-------~~~~~tt~~~~-~~~~~~~~~--~i~l~DtpG~~~~~~~~~~-~  207 (424)
                      .++|++||.+|.|||||+|.|...++...       .+.+.|+.-.. ...+..++.  ++.++||||+.+.-..-.- +
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            58999999999999999999986554321       12334443332 223444444  4789999999865432111 1


Q ss_pred             hhhhHH----HHHHh---------hc--ccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          208 DVKVRV----ESAWS---------AV--NLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       208 ~~~~~~----~~~~~---------~~--~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      .+...+    ...+.         .+  ...++++|.+..+.+. ...+..+++.|.+.       ..++-|+-|.|-..
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIakaDtlT  198 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeeccccc
Confidence            111111    11111         01  3458899999887443 33344555555543       34788999999765

>cd01856 YlqF YlqF

Probab=98.61  E-value=2.9e-07  Score=81.31  Aligned_cols=95  Identities=21%  Similarity=0.334  Sum_probs=66.5

Q ss_pred             hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC
Q 014461          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY  289 (424)
Q Consensus       210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~  289 (424)
                      ...+.+.+..+..+|++++|+|++.+....+..+..   ...     +.|+++|+||+|+... .......+.+... . 
T Consensus         7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~---~~~-----~k~~ilVlNK~Dl~~~-~~~~~~~~~~~~~-~-   75 (171)
T cd01856           7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEK---ILG-----NKPRIIVLNKADLADP-KKTKKWLKYFESK-G-   75 (171)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHh---Hhc-----CCCEEEEEehhhcCCh-HHHHHHHHHHHhc-C-
Confidence            345677788889999999999998665544333322   221     3679999999999753 2222333333332 2 


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..++.+||++|.|+++|.+.+.+.++
T Consensus        76 ~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          76 EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            35899999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF07650 KH_2: KH domain syndrome, contains KH motifs

Probab=98.59  E-value=4.4e-08  Score=74.64  Aligned_cols=51  Identities=35%  Similarity=0.532  Sum_probs=47.9

Q ss_pred             EEEEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461          373 EQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       373 ~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~  424 (424)
                      .+.+++.+.+|++++||++|++|++|+..+++.|+.+++++|+|+++ +|++
T Consensus        25 ~~~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l~~~~~~~V~l~v~-~V~~   75 (78)
T PF07650_consen   25 DQIIIVIKASQPGIVIGKKGSNIKKIREELRKELEKLLNKKVFLNVV-KVKK   75 (78)
T ss_dssp             SEEEEEEEESSHHHHHTGGGHHHHHHHHHHHHHHHHHCSSSEEEEEE-EESS
T ss_pred             CeEEEEEeCCCccHhHHhhhHHHHHHHHHHHHHHhhcCCCcEEEEEE-EecC
Confidence            56778889999999999999999999999999999999999999999 8874

; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.1e-06  Score=84.88  Aligned_cols=129  Identities=17%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee------cCCCCce--eeEEEEEEecCCc--cEEEEeCCCcccCCCCCC-
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV------SRKTNTT--THEVLGVMTKADT--QICIFDTPGLMLNKSGYS-  205 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~------~~~~~tt--~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~-  205 (424)
                      .-.+.++++|.+|.|||||+|.|++..+...      ...+..|  .......+..+|.  .++++||||+.+.-.... 
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            4468999999999999999999987643211      1112112  2222222344444  478999999986432111 


Q ss_pred             h----hhhhhHHHHHHhh--------c--ccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          206 H----KDVKVRVESAWSA--------V--NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       206 ~----~~~~~~~~~~~~~--------~--~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      .    ..+...+..++..        .  ...+++||.+..+.+ +...+....+.+..       ...+|-|+-|.|..
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-------~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-------KVNLIPVIAKADTL  171 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-------cccccceeeccccC
Confidence            0    1112223322221        1  256899999987643 44444444333332       35688899999998


Q ss_pred             CC
Q 014461          271 TK  272 (424)
Q Consensus       271 ~~  272 (424)
                      ..
T Consensus       172 T~  173 (366)
T KOG2655|consen  172 TK  173 (366)
T ss_pred             CH
Confidence            75

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.59  E-value=2.9e-07  Score=79.90  Aligned_cols=83  Identities=27%  Similarity=0.343  Sum_probs=57.4

Q ss_pred             cEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcC
Q 014461          224 EVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG  302 (424)
Q Consensus       224 D~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  302 (424)
                      |++++|+|+.++.......+. ..+..      .+.|+++|+||+|+... .....+...+.... ...++++||++|.|
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~------~~~p~IiVlNK~Dl~~~-~~~~~~~~~~~~~~-~~~ii~vSa~~~~g   72 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKE------KGKKLILVLNKADLVPK-EVLRKWLAYLRHSY-PTIPFKISATNGQG   72 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhc------CCCCEEEEEechhcCCH-HHHHHHHHHHHhhC-CceEEEEeccCCcC
Confidence            789999999766555444333 12222      24789999999999763 33334444454443 34589999999999


Q ss_pred             hHHHHHHHHHhc
Q 014461          303 LKALTQYLMEQA  314 (424)
Q Consensus       303 i~~L~~~i~~~l  314 (424)
                      +++|.+.|.+..
T Consensus        73 i~~L~~~i~~~~   84 (155)
T cd01849          73 IEKKESAFTKQT   84 (155)
T ss_pred             hhhHHHHHHHHh
Confidence            999999987653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.58  E-value=2.7e-07  Score=87.97  Aligned_cols=96  Identities=18%  Similarity=0.259  Sum_probs=69.4

Q ss_pred             hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC
Q 014461          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY  289 (424)
Q Consensus       210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~  289 (424)
                      ....+.....+..+|++++|+|+..+.+.....+.+.+.        +.|+++|+||+|+.+. .......+.+.. .+.
T Consensus         9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--------~kp~IiVlNK~DL~~~-~~~~~~~~~~~~-~~~   78 (276)
T TIGR03596         9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--------NKPRLIVLNKADLADP-AVTKQWLKYFEE-KGI   78 (276)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--------CCCEEEEEEccccCCH-HHHHHHHHHHHH-cCC
Confidence            345666777889999999999998766655544444431        3689999999999753 333444444433 233


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                       .++++||++|.|+++|.+.|.+.++.
T Consensus        79 -~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        79 -KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             -eEEEEECCCcccHHHHHHHHHHHHHH
Confidence             48999999999999999999887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.57  E-value=3.9e-07  Score=81.84  Aligned_cols=90  Identities=22%  Similarity=0.241  Sum_probs=58.5

Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh-----cCC--CCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-----HLP--GYE  290 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-----~~~--~~~  290 (424)
                      ..+..+|++++|+|+++........+    ....    .+.|+++|+||+|+...... ......+.     ...  ...
T Consensus        30 ~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~----~~~~~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~  100 (190)
T cd01855          30 SISPKKALVVHVVDIFDFPGSLIPRL----RLFG----GNNPVILVGNKIDLLPKDKN-LVRIKNWLRAKAAAGLGLKPK  100 (190)
T ss_pred             hcccCCcEEEEEEECccCCCccchhH----HHhc----CCCcEEEEEEchhcCCCCCC-HHHHHHHHHHHHHhhcCCCcc
Confidence            34578899999999976433322222    1111    24789999999999754221 11112221     111  223


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .++++||++|.|+++|+++|.+.++.
T Consensus       101 ~i~~vSA~~~~gi~eL~~~l~~~l~~  126 (190)
T cd01855         101 DVILISAKKGWGVEELINAIKKLAKK  126 (190)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            58999999999999999999998753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.55  E-value=3.5e-07  Score=85.52  Aligned_cols=90  Identities=19%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|.+++|+|++++.. ....+..|+.....   .+.|+++|+||+||........+..+.+.. .++ .++++||+
T Consensus        33 ~~~n~D~viiV~d~~~p~~-s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g~-~v~~~SAk  106 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPEL-SLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IGY-QVLMTSSK  106 (245)
T ss_pred             ccccCCEEEEEEECCCCCC-CHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CCC-eEEEEecC
Confidence            3677899999999975432 23345555554332   247899999999997644333345555654 455 49999999


Q ss_pred             CCcChHHHHHHHHHhc
Q 014461          299 KGAGLKALTQYLMEQA  314 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l  314 (424)
                      +|.|+++|++.+.+..
T Consensus       107 tg~gi~eLf~~l~~~~  122 (245)
T TIGR00157       107 NQDGLKELIEALQNRI  122 (245)
T ss_pred             CchhHHHHHhhhcCCE
Confidence            9999999999887543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.53  E-value=1.9e-07  Score=88.11  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=68.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-----------------CccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------------~~~i~l~DtpG~~~  199 (424)
                      ...++++|||.||||||||+|+|+..... ..+.|.+|.++..+.+...                 ...+.++|..|...
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            35679999999999999999999998877 8999999988866653221                 12488999999875


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      ..+.     -...-...++.++.+|+++.|+++.
T Consensus        97 GAs~-----G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   97 GASA-----GEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             Cccc-----CcCchHHHHHhhhhccceeEEEEec
Confidence            4320     0111233456788899999999885

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.51  E-value=4.5e-06  Score=80.83  Aligned_cols=150  Identities=17%  Similarity=0.253  Sum_probs=81.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCc-----------eeeEEEEEE------------------
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT-----------TTHEVLGVM------------------  182 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~t-----------t~~~~~~~~------------------  182 (424)
                      ++..++++|++|+||||++..|.+      .++..+...+..           .+.......                  
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            467889999999999999998864      222222211110           000000000                  


Q ss_pred             ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh-----cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCC
Q 014461          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-----VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK  257 (424)
Q Consensus       183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-----~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~  257 (424)
                      ...++.++++||||......     .....+......     -...+.+++|+|++.+.    ..+.+ ...+....   
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~----~~~~~-a~~f~~~~---  259 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ----NALSQ-AKAFHEAV---  259 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh----HHHHH-HHHHHhhC---
Confidence            12456799999999864321     111112222221     12467889999997432    12222 22222111   


Q ss_pred             CcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHH
Q 014461          258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       258 ~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~  307 (424)
                      .+.-+|+||+|....-.........+    +.+ +..++  +|+++++|.
T Consensus       260 ~~~giIlTKlD~t~~~G~~l~~~~~~----~~P-i~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        260 GLTGIILTKLDGTAKGGVVFAIADEL----GIP-IKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCEEEEECCCCCCCccHHHHHHHHH----CCC-EEEEe--CCCChhhCc
Confidence            23568999999765434444444333    443 77776  788887764

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.51  E-value=6.1e-07  Score=76.57  Aligned_cols=82  Identities=26%  Similarity=0.427  Sum_probs=59.4

Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      +.++..+..+|++++|+|+.++....+..+.+++....    .+.|+++|+||+|+... .......+.+... +. .++
T Consensus         3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----~~k~~iivlNK~DL~~~-~~~~~~~~~~~~~-~~-~ii   75 (141)
T cd01857           3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD----PRKKNILLLNKADLLTE-EQRKAWAEYFKKE-GI-VVV   75 (141)
T ss_pred             HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc----CCCcEEEEEechhcCCH-HHHHHHHHHHHhc-CC-eEE
Confidence            45567788899999999998877766667777777542    24789999999999753 3333444444433 33 589


Q ss_pred             EEecCCCcC
Q 014461          294 MTSGLKGAG  302 (424)
Q Consensus       294 ~iSA~~g~g  302 (424)
                      ++||++|.+
T Consensus        76 ~iSa~~~~~   84 (141)
T cd01857          76 FFSALKENA   84 (141)
T ss_pred             EEEecCCCc
Confidence            999999876

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=7e-07  Score=91.91  Aligned_cols=113  Identities=27%  Similarity=0.317  Sum_probs=75.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC---------------ceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN---------------TTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~---------------tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ....+++++.+-..|||||...|+.......+...|               .|.....-.+...++.++++|+||+.++.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            346789999999999999999998543322222222               22222111134578889999999998764


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHH--HHHHhccCCCCCCcEEEEEecCCC
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIR--LIERMGKQAPPKQKRVLCMNKVDL  269 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~--~l~~~~~~~~~~~p~ilV~NK~Dl  269 (424)
                      +.         +.   ....-+|..++++|+..+.......++.  |.+.        ...++|+||+|.
T Consensus        87 se---------vs---sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~--------~~~~lvinkidr  136 (887)
T KOG0467|consen   87 SE---------VS---SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEG--------LKPILVINKIDR  136 (887)
T ss_pred             hh---------hh---hhhhhcCCcEEEEeeccccchhHHHHHHHHHHcc--------CceEEEEehhhh
Confidence            21         22   2345579999999998887766655554  3332        447999999993

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.47  E-value=7.2e-06  Score=81.92  Aligned_cols=122  Identities=18%  Similarity=0.164  Sum_probs=68.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCc-----------eee--EEEEEEe--------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNT-----------TTH--EVLGVMT--------------  183 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~t-----------t~~--~~~~~~~--------------  183 (424)
                      .++..|+++|.+||||||++..|.      |.++..++..+..           ...  +......              
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            346789999999999999999886      4444434332211           010  1111111              


Q ss_pred             --cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 014461          184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (424)
Q Consensus       184 --~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (424)
                        ..+++++|+||||.....     ......+.... .....|.+++|+|++.+.  .....   .+.+...   -.+.-
T Consensus       178 ~~~~~~DvViIDTaGr~~~d-----~~lm~El~~i~-~~~~p~e~lLVlda~~Gq--~a~~~---a~~F~~~---~~~~g  243 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHKQE-----DSLFEEMLQVA-EAIQPDNIIFVMDGSIGQ--AAEAQ---AKAFKDS---VDVGS  243 (429)
T ss_pred             HHhCCCCEEEEECCCCCcch-----HHHHHHHHHHh-hhcCCcEEEEEeccccCh--hHHHH---HHHHHhc---cCCcE
Confidence              125789999999975431     11212222222 234568899999986432  11222   2333211   12467


Q ss_pred             EEEecCCCCCC
Q 014461          262 LCMNKVDLVTK  272 (424)
Q Consensus       262 lV~NK~Dl~~~  272 (424)
                      +|+||+|....
T Consensus       244 ~IlTKlD~~ar  254 (429)
T TIGR01425       244 VIITKLDGHAK  254 (429)
T ss_pred             EEEECccCCCC
Confidence            89999998654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.42  E-value=1.9e-06  Score=87.15  Aligned_cols=63  Identities=17%  Similarity=0.196  Sum_probs=48.4

Q ss_pred             CCcEEEEEecCCCCCC---h--------hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCC
Q 014461          257 KQKRVLCMNKVDLVTK---K--------KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWS  320 (424)
Q Consensus       257 ~~p~ilV~NK~Dl~~~---~--------~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~  320 (424)
                      ++|++||++|+|....   +        +-+...++.++-.+|.. .|.+|++...+++-|+.+|...+...++.
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~yi~h~l~~~~f~  269 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKYILHRLYGFPFK  269 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHHHHHHhccCCCC
Confidence            3799999999997421   0        12345566677677776 88899999999999999999998776654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2.8e-06  Score=86.91  Aligned_cols=147  Identities=24%  Similarity=0.363  Sum_probs=82.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce------------------------------------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------------------------------------------  174 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt------------------------------------------  174 (424)
                      ....+|+|.|..++||||++|+++..++-.. +..++|                                          
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~-g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPS-GIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcc-cccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            3568999999999999999999986443211 111111                                          


Q ss_pred             --eeEEEEEEecCC------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHH
Q 014461          175 --THEVLGVMTKAD------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL  246 (424)
Q Consensus       175 --~~~~~~~~~~~~------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~  246 (424)
                        ......++..++      ..+.++|.||......      .   -........++|++|+|+.+.+.++.....+   
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se------~---tswid~~cldaDVfVlV~NaEntlt~sek~F---  253 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE------L---TSWIDSFCLDADVFVLVVNAENTLTLSEKQF---  253 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchh------h---hHHHHHHhhcCCeEEEEecCccHhHHHHHHH---
Confidence              111111222222      3588999999875421      1   1111234567899999999976555444433   


Q ss_pred             HHHhccCCCCCCcEEEEEecCCCCCChhhHH-HHHHHHhcCC------CCCeEEEEecCC
Q 014461          247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-KVAEQFKHLP------GYERIFMTSGLK  299 (424)
Q Consensus       247 l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~------~~~~~~~iSA~~  299 (424)
                      +......   +..++++.||.|....+.... ....++.+..      ....+|.|||+.
T Consensus       254 f~~vs~~---KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  254 FHKVSEE---KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHhhcc---CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            3333222   233777888889876533222 1222222211      123689999763

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=1.1e-06  Score=81.58  Aligned_cols=165  Identities=15%  Similarity=0.277  Sum_probs=95.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCC---------------------CCceeeEEEEE----------EecC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK---------------------TNTTTHEVLGV----------MTKA  185 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~---------------------~~tt~~~~~~~----------~~~~  185 (424)
                      ...++|+-+|+.-.||||++.++.|-......+.                     +.+.+......          +...
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            3468999999999999999999987321110000                     00000000000          0000


Q ss_pred             C--------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCC
Q 014461          186 D--------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPP  256 (424)
Q Consensus       186 ~--------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~  256 (424)
                      +        ..+.|+|+||+.-            .+...+....-.|++++++.+......+. .+-+..++-+..    
T Consensus       116 g~~~~~klvRHVSfVDCPGHDi------------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L----  179 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDI------------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL----  179 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHH------------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh----
Confidence            1        2467999999631            12233333344588888888764333222 122222332221    


Q ss_pred             CCcEEEEEecCCCCCChhhHHH--HHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          257 KQKRVLCMNKVDLVTKKKDLLK--VAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       257 ~~p~ilV~NK~Dl~~~~~~~~~--~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                       +.++++-||+|+....+..+.  ....|-.-.  ...+++|+||.-+.|++-+.++|.+.++..+
T Consensus       180 -khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv  244 (466)
T KOG0466|consen  180 -KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV  244 (466)
T ss_pred             -ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence             348899999999876433222  122222111  2236999999999999999999999997654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.39  E-value=1.4e-06  Score=83.46  Aligned_cols=96  Identities=22%  Similarity=0.297  Sum_probs=68.4

Q ss_pred             hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC
Q 014461          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY  289 (424)
Q Consensus       210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~  289 (424)
                      ....+..+..+..+|++++|+|+..+.+.....+.+.+.        +.|+++|+||+|+.+. .......+.+... + 
T Consensus        12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--------~kp~iiVlNK~DL~~~-~~~~~~~~~~~~~-~-   80 (287)
T PRK09563         12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--------NKPRLLILNKSDLADP-EVTKKWIEYFEEQ-G-   80 (287)
T ss_pred             HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--------CCCEEEEEEchhcCCH-HHHHHHHHHHHHc-C-
Confidence            345666777889999999999997766655544443332        3689999999999753 3333444444322 2 


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ..++.+||+++.|+++|.+.|.+.++.
T Consensus        81 ~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         81 IKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            248999999999999999998877643

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=5e-06  Score=78.51  Aligned_cols=161  Identities=18%  Similarity=0.265  Sum_probs=101.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC----------Ccceeec-----CCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~----------~~~~~~~-----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ....+|+-+|+-..|||||..++..          .++..+.     ...+.|.......+......+-=+|+||+-++ 
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY-  130 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY-  130 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH-
Confidence            4568999999999999999998873          1122222     22345555443334445566778999997643 


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH--
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV--  279 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~--  279 (424)
                                 +++......+-|..|+|+.++++.-.+..+-+-+-++++.     ..+++.+||.|++++.+ ..++  
T Consensus       131 -----------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV-----~~ivvfiNKvD~V~d~e-~leLVE  193 (449)
T KOG0460|consen  131 -----------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGV-----KHIVVFINKVDLVDDPE-MLELVE  193 (449)
T ss_pred             -----------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCC-----ceEEEEEecccccCCHH-HHHHHH
Confidence                       5555566677799999999998766655544444455552     34788899999996533 2222  


Q ss_pred             --HHHHhcCCCCC----eEEEEecC---CCcC-------hHHHHHHHHHhcc
Q 014461          280 --AEQFKHLPGYE----RIFMTSGL---KGAG-------LKALTQYLMEQAV  315 (424)
Q Consensus       280 --~~~~~~~~~~~----~~~~iSA~---~g~g-------i~~L~~~i~~~l~  315 (424)
                        ++++...++|+    +++.=||+   .|.+       |.+|++.+-++++
T Consensus       194 mE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip  245 (449)
T KOG0460|consen  194 MEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP  245 (449)
T ss_pred             HHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence              33444455553    57766654   4422       5556666655554

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.36  E-value=8.7e-07  Score=79.28  Aligned_cols=125  Identities=20%  Similarity=0.228  Sum_probs=77.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHH-HH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVE-SA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~-~~  216 (424)
                      ..||.++|.+|+||||+=..+.....+.-...+|.|.+..-+.+.. ++--+.+||..|+..+-.        ..+. .-
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme--------n~~~~q~   75 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME--------NYLSSQE   75 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHH--------HHHhhcc
Confidence            4689999999999999877666544443444556666555444433 345678999999863311        1111 11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      -......+++++|+|++..--+.+. .....|+.+.. ..|...+++.+.|+|+...
T Consensus        76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~-~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ-NSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHh-cCCcceEEEEEeechhccc
Confidence            1235678999999999743222222 23333444332 2345778999999999864

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.34  E-value=3.3e-05  Score=73.26  Aligned_cols=151  Identities=15%  Similarity=0.203  Sum_probs=80.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCc-----------eeeEEEEE------------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT-----------TTHEVLGV------------------  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~t-----------t~~~~~~~------------------  181 (424)
                      .+...++++|++|+||||++..|..      .++..+...+..           .+......                  
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~  149 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK  149 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence            3457789999999999999888752      233222211100           00000000                  


Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc-----ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~  256 (424)
                      ....++.++++||||.....     ......+.......     ..+|.+++|+|++.+  ..  .+. ....+....  
T Consensus       150 ~~~~~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~--~~~-~~~~f~~~~--  217 (272)
T TIGR00064       150 AKARNIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QN--ALE-QAKVFNEAV--  217 (272)
T ss_pred             HHHCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HH--HHH-HHHHHHhhC--
Confidence            01245789999999986421     11111122222222     237899999999632  11  111 122222111  


Q ss_pred             CCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHH
Q 014461          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       257 ~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~  307 (424)
                       .+.-+|+||+|....-..........    +.+ +..++  +|++++++.
T Consensus       218 -~~~g~IlTKlDe~~~~G~~l~~~~~~----~~P-i~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       218 -GLTGIILTKLDGTAKGGIILSIAYEL----KLP-IKFIG--VGEKIDDLA  260 (272)
T ss_pred             -CCCEEEEEccCCCCCccHHHHHHHHH----CcC-EEEEe--CCCChHhCc
Confidence             13568899999876544444444433    333 66666  788887654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=7.9e-06  Score=81.61  Aligned_cols=141  Identities=13%  Similarity=0.309  Sum_probs=88.0

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ...+.++-|+++|+||+|||||+..|...-... +....+.     ..++.....++.|+.+|.-               
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp~D---------------  123 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECPSD---------------  123 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeChHH---------------
Confidence            356677888999999999999999997532211 1111111     1123355667899999842               


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH-----HhcCC
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-----FKHLP  287 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~-----~~~~~  287 (424)
                      +.......+-||+|++++|+.-++.-....++.++...+.     ..++-|++..|+......+......     |.+.+
T Consensus       124 l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGm-----PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiy  198 (1077)
T COG5192         124 LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGM-----PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIY  198 (1077)
T ss_pred             HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCC-----CceEEEEeecccccChHHHHHHHHHHhhhHHHHHc
Confidence            1122234566899999999976655544456666665542     2367799999998765444443333     22333


Q ss_pred             CCCeEEEEecCC
Q 014461          288 GYERIFMTSGLK  299 (424)
Q Consensus       288 ~~~~~~~iSA~~  299 (424)
                      .-...|.+|...
T Consensus       199 qGaKlFylsgV~  210 (1077)
T COG5192         199 QGAKLFYLSGVE  210 (1077)
T ss_pred             CCceEEEecccc
Confidence            444578888653

>PRK12289 GTPase RsgA; Reviewed

Probab=98.24  E-value=4.2e-06  Score=82.03  Aligned_cols=88  Identities=24%  Similarity=0.360  Sum_probs=60.8

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +.++|.+++|+|+.++. .....+..++.....   .+.|+++|+||+|+... .....+.+.+. ..++ .++++||++
T Consensus        87 ~aNvD~vLlV~d~~~p~-~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~-~~~~~~~~~~~-~~g~-~v~~iSA~t  159 (352)
T PRK12289         87 VANADQILLVFALAEPP-LDPWQLSRFLVKAES---TGLEIVLCLNKADLVSP-TEQQQWQDRLQ-QWGY-QPLFISVET  159 (352)
T ss_pred             hhcCCEEEEEEECCCCC-CCHHHHHHHHHHHHH---CCCCEEEEEEchhcCCh-HHHHHHHHHHH-hcCC-eEEEEEcCC
Confidence            57789999999997432 222234455544321   24789999999999864 33344444443 3455 489999999


Q ss_pred             CcChHHHHHHHHHhc
Q 014461          300 GAGLKALTQYLMEQA  314 (424)
Q Consensus       300 g~gi~~L~~~i~~~l  314 (424)
                      |.|+++|++.|...+
T Consensus       160 g~GI~eL~~~L~~ki  174 (352)
T PRK12289        160 GIGLEALLEQLRNKI  174 (352)
T ss_pred             CCCHHHHhhhhccce
Confidence            999999999987643

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=6e-06  Score=78.75  Aligned_cols=155  Identities=21%  Similarity=0.343  Sum_probs=93.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcce------eec-------CCCCceeeEE---EE------E------------Eec
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVA------AVS-------RKTNTTTHEV---LG------V------------MTK  184 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~------~~~-------~~~~tt~~~~---~~------~------------~~~  184 (424)
                      ..+++++|.-.+|||||+--|......      ...       -..+.|....   .+      +            ...
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            478999999999999999888743211      000       0011111100   00      0            111


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      ...-+.|+|..|...+.....+         .+.. .-.|..++|+.+..+......+-+-++..+      +.|+++++
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~---------gLtg-Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL------~iPfFvlv  310 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIH---------GLTG-YTPHFACLVVSADRGITWTTREHLGLIAAL------NIPFFVLV  310 (591)
T ss_pred             hcceEEEeecccchhhheeeee---------eccc-CCCceEEEEEEcCCCCccccHHHHHHHHHh------CCCeEEEE
Confidence            2234789999998755321110         0111 124888999999888777666555555555      48999999


Q ss_pred             ecCCCCCChhhHHHHHHHHhc----------------------------CCCCCeEEEEecCCCcChHHHHHHH
Q 014461          265 NKVDLVTKKKDLLKVAEQFKH----------------------------LPGYERIFMTSGLKGAGLKALTQYL  310 (424)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~iSA~~g~gi~~L~~~i  310 (424)
                      +|+|+... +.+.+.++++..                            ..+..++|.+|+.+|+|++-|...|
T Consensus       311 tK~Dl~~~-~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  311 TKMDLVDR-QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             Eeeccccc-hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            99999875 333333333221                            1234478999999999998666554

>PRK14974 cell division protein FtsY; Provisional

Probab=98.22  E-value=9.8e-05  Score=71.93  Aligned_cols=149  Identities=19%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-----------e--eEEEEE----------------E
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-----------T--HEVLGV----------------M  182 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-----------~--~~~~~~----------------~  182 (424)
                      ++..++++|.+|+||||++..|..      .++..+.......           .  -.....                .
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~  218 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA  218 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence            467899999999999998777652      2222121111000           0  000000                0


Q ss_pred             ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (424)
Q Consensus       183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il  262 (424)
                      ...+..++++||+|.....     ......++.... ....|.+++|+|+..+.   +  ..+....+....   ..--+
T Consensus       219 ~~~~~DvVLIDTaGr~~~~-----~~lm~eL~~i~~-~~~pd~~iLVl~a~~g~---d--~~~~a~~f~~~~---~~~gi  284 (336)
T PRK14974        219 KARGIDVVLIDTAGRMHTD-----ANLMDELKKIVR-VTKPDLVIFVGDALAGN---D--AVEQAREFNEAV---GIDGV  284 (336)
T ss_pred             HhCCCCEEEEECCCccCCc-----HHHHHHHHHHHH-hhCCceEEEeeccccch---h--HHHHHHHHHhcC---CCCEE
Confidence            1134679999999986421     112122222222 23468999999996421   1  112223222111   12468


Q ss_pred             EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHH
Q 014461          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~  307 (424)
                      ++||+|....-..........    +.+ +..++  +|+++++|.
T Consensus       285 IlTKlD~~~~~G~~ls~~~~~----~~P-i~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        285 ILTKVDADAKGGAALSIAYVI----GKP-ILFLG--VGQGYDDLI  322 (336)
T ss_pred             EEeeecCCCCccHHHHHHHHH----CcC-EEEEe--CCCChhhcc
Confidence            899999876544444444332    333 67776  799988765

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.20  E-value=6.8e-06  Score=71.52  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=40.8

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhh-HHHHHHhhcccccEEEEEEeCCCCCCCc--hHHHHHHHHHhccCCCCCCcEEE
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKV-RVESAWSAVNLFEVLMVVFDVHRHLTSP--DSRVIRLIERMGKQAPPKQKRVL  262 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~aD~vl~VvD~~~~~~~~--~~~~~~~l~~~~~~~~~~~p~il  262 (424)
                      ..+.+++||||...+..     .... +....+...-..|.+++++|+.......  ...+...++..         -++
T Consensus        86 ~~d~I~IEt~G~~~p~~-----~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---------d~i  151 (158)
T cd03112          86 AFDRIVIETTGLADPGP-----VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---------DRI  151 (158)
T ss_pred             CCCEEEEECCCcCCHHH-----HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---------CEE
Confidence            46789999999986531     1111 1223444566789999999985321111  11222223221         377


Q ss_pred             EEecCCC
Q 014461          263 CMNKVDL  269 (424)
Q Consensus       263 V~NK~Dl  269 (424)
                      |+||+|+
T Consensus       152 vlnk~dl  158 (158)
T cd03112         152 LLNKTDL  158 (158)
T ss_pred             EEecccC
Confidence            9999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.19  E-value=7.7e-06  Score=78.79  Aligned_cols=88  Identities=19%  Similarity=0.307  Sum_probs=58.7

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +.++|.+++|+|++++... ...+..++.....   .+.|+++|+||+|+...........+.+.. .++ +++++||++
T Consensus        78 aaniD~vllV~d~~~p~~~-~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-~g~-~v~~vSA~~  151 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFS-TDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALYRA-IGY-DVLELSAKE  151 (298)
T ss_pred             eecCCEEEEEEECCCCCCC-HHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-CCC-eEEEEeCCC
Confidence            5788999999999654222 2233344443322   247899999999997443333333343433 345 499999999


Q ss_pred             CcChHHHHHHHHHh
Q 014461          300 GAGLKALTQYLMEQ  313 (424)
Q Consensus       300 g~gi~~L~~~i~~~  313 (424)
                      |.|+++|++.+...
T Consensus       152 g~gi~~L~~~l~gk  165 (298)
T PRK00098        152 GEGLDELKPLLAGK  165 (298)
T ss_pred             CccHHHHHhhccCc
Confidence            99999999988543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.19  E-value=2.1e-05  Score=79.37  Aligned_cols=161  Identities=15%  Similarity=0.114  Sum_probs=97.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.+...++|+.|+|||.++++++|+.+.. +....+.... ...+ .......+++-|.+-. ... .+..       
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~-~l~~-------  491 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQD-FLTS-------  491 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccc-cccC-------
Confidence            3456788999999999999999999987764 2222111111 1111 1122334566665543 110 0000       


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                         .+  ..||++++++|.+++.  ....+...... +... ...|+++|..|+|+.+..+...-.-.+++...+.++.+
T Consensus       492 ---ke--~~cDv~~~~YDsS~p~--sf~~~a~v~~~-~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~  562 (625)
T KOG1707|consen  492 ---KE--AACDVACLVYDSSNPR--SFEYLAEVYNK-YFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPI  562 (625)
T ss_pred             ---cc--ceeeeEEEecccCCch--HHHHHHHHHHH-hhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCe
Confidence               01  4589999999997432  22223232222 2222 35899999999999765433333336777777888788


Q ss_pred             EEecCCCcChHHHHHHHHHhccC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .+|.++... .++|..|...+..
T Consensus       563 ~~S~~~~~s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  563 HISSKTLSS-NELFIKLATMAQY  584 (625)
T ss_pred             eeccCCCCC-chHHHHHHHhhhC
Confidence            888885223 8899999887753

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.17  E-value=1.2e-05  Score=79.47  Aligned_cols=86  Identities=20%  Similarity=0.228  Sum_probs=57.4

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCCC--CeEEE
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGY--ERIFM  294 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~--~~~~~  294 (424)
                      ...++++++|+|+.+........+    .+..    .+.|+++|+||+|+.....   ...+.+.++....++  ..+++
T Consensus        61 ~~~~~~Il~VvD~~d~~~s~~~~l----~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~  132 (360)
T TIGR03597        61 GDSNALIVYVVDIFDFEGSLIPEL----KRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL  132 (360)
T ss_pred             ccCCcEEEEEEECcCCCCCccHHH----HHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence            357789999999965433322222    2221    1368999999999975422   233333333334444  25899


Q ss_pred             EecCCCcChHHHHHHHHHh
Q 014461          295 TSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~  313 (424)
                      +||++|.|++++++.|.+.
T Consensus       133 vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       133 VSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             ecCCCCCCHHHHHHHHHHH
Confidence            9999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.11  E-value=1.3e-05  Score=76.72  Aligned_cols=86  Identities=19%  Similarity=0.260  Sum_probs=57.5

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..+|.+++|+|+.++. .....+..++..+...   +.|+++|+||+|+.... ........+. ..+. +++++||++
T Consensus        76 ~anvD~vllV~d~~~p~-~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~-~~~~~~~~~~-~~g~-~v~~vSA~~  148 (287)
T cd01854          76 AANVDQLVIVVSLNEPF-FNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE-EEELELVEAL-ALGY-PVLAVSAKT  148 (287)
T ss_pred             EEeCCEEEEEEEcCCCC-CCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH-HHHHHHHHHH-hCCC-eEEEEECCC
Confidence            67789999999997654 1222334445433322   47899999999997642 2112222222 2344 489999999


Q ss_pred             CcChHHHHHHHHH
Q 014461          300 GAGLKALTQYLME  312 (424)
Q Consensus       300 g~gi~~L~~~i~~  312 (424)
                      |.|+++|++.|..
T Consensus       149 g~gi~~L~~~L~~  161 (287)
T cd01854         149 GEGLDELREYLKG  161 (287)
T ss_pred             CccHHHHHhhhcc
Confidence            9999999998875

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK13796 GTPase YqeH; Provisional

Probab=98.10  E-value=2.3e-05  Score=77.64  Aligned_cols=94  Identities=19%  Similarity=0.199  Sum_probs=62.7

Q ss_pred             HHHHHhhccccc-EEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHHHHHHhcCCC
Q 014461          213 VESAWSAVNLFE-VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLPG  288 (424)
Q Consensus       213 ~~~~~~~~~~aD-~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~~  288 (424)
                      +...+..+...| +|++|+|+.+....    +...+.++..    +.|+++|+||+|+....   ....++...+.+..+
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s----~~~~L~~~~~----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g  130 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFNGS----WIPGLHRFVG----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG  130 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCCCc----hhHHHHHHhC----CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC
Confidence            444566666666 99999999753322    2333443321    46899999999997532   223334444444444


Q ss_pred             C--CeEEEEecCCCcChHHHHHHHHHhc
Q 014461          289 Y--ERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       289 ~--~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .  ..++.+||++|.|+++|++.|.+..
T Consensus       131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        131 LRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            3  2589999999999999999998764

>PRK01889 GTPase RsgA; Reviewed

Probab=98.10  E-value=1.1e-05  Score=79.50  Aligned_cols=84  Identities=20%  Similarity=0.399  Sum_probs=54.1

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +.++|.+++|+++...+..  ..+..+|......   +.|.++|+||+||.+......+....+  ..+. +++++||++
T Consensus       110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~-~Vi~vSa~~  181 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL--APGV-PVLAVSALD  181 (356)
T ss_pred             EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh--CCCC-cEEEEECCC
Confidence            4678999999999644332  2333333332211   356788999999986422222222222  2233 599999999


Q ss_pred             CcChHHHHHHHH
Q 014461          300 GAGLKALTQYLM  311 (424)
Q Consensus       300 g~gi~~L~~~i~  311 (424)
                      |.|+++|.++|.
T Consensus       182 g~gl~~L~~~L~  193 (356)
T PRK01889        182 GEGLDVLAAWLS  193 (356)
T ss_pred             CccHHHHHHHhh
Confidence            999999999885

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.00  E-value=4.9e-05  Score=86.11  Aligned_cols=127  Identities=16%  Similarity=0.189  Sum_probs=71.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      +=.+++|++|+||||+++.- |..+.....       ..+.|+++..    +-..+.+++||+|......... ......
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w----wf~~~avliDtaG~y~~~~~~~-~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW----WFTDEAVLIDTAGRYTTQDSDP-EEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce----EecCCEEEEcCCCccccCCCcc-cccHHH
Confidence            45689999999999999986 544432110       1122222111    1234568999999764321111 000111


Q ss_pred             HHHHHhh------cccccEEEEEEeCCCCCCCchH-------HHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          213 VESAWSA------VNLFEVLMVVFDVHRHLTSPDS-------RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       213 ~~~~~~~------~~~aD~vl~VvD~~~~~~~~~~-------~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ....+..      -...|+||+++|+.+-+.....       .+...+.++........|+.+|+||||+...
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            2222221      2456999999999754433221       2333344444333345899999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=0.00012  Score=72.00  Aligned_cols=26  Identities=12%  Similarity=0.317  Sum_probs=22.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..++..++++|++||||||++..|..
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999864

>PRK12288 GTPase RsgA; Reviewed

Probab=97.94  E-value=5.8e-05  Score=74.01  Aligned_cols=88  Identities=20%  Similarity=0.325  Sum_probs=58.6

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEEEec
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      +.++|.+++|++.....  ....+..|+.....   .+.|.++|+||+|+.....  ...+....+.. .++ +++++||
T Consensus       118 aANvD~vlIV~s~~p~~--s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g~-~v~~vSA  190 (347)
T PRK12288        118 AANIDQIVIVSAVLPEL--SLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IGY-RVLMVSS  190 (347)
T ss_pred             EEEccEEEEEEeCCCCC--CHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CCC-eEEEEeC
Confidence            45689999999975432  22344444443321   2478999999999976421  23333344433 344 5999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.|+++|+++|...+
T Consensus       191 ~tg~GideL~~~L~~ki  207 (347)
T PRK12288        191 HTGEGLEELEAALTGRI  207 (347)
T ss_pred             CCCcCHHHHHHHHhhCC
Confidence            99999999999997644

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.93  E-value=4.8e-05  Score=67.42  Aligned_cols=123  Identities=17%  Similarity=0.210  Sum_probs=59.0

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+.++|+||+.+-..   |-.+...+-+.+....---++++++|+. -+.+....+.-.+..+.....-..|.|=|++|
T Consensus        98 ddylifDcPGQIELyt---H~pVm~~iv~hl~~~~F~~c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE~P~INvlsK  173 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYT---HLPVMPQIVEHLKQWNFNVCVVYLLDSQ-FLVDSTKFISGCLSALSAMISLEVPHINVLSK  173 (273)
T ss_pred             CCEEEEeCCCeeEEee---cChhHHHHHHHHhcccCceeEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhH
Confidence            4588999999986532   2222122222222222224677777763 22232222222222211111124789999999


Q ss_pred             CCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcC---hHHHHHHHHHhccCC
Q 014461          267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG---LKALTQYLMEQAVQR  317 (424)
Q Consensus       267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g---i~~L~~~i~~~l~~~  317 (424)
                      +||.+.  ...+.++.|..--... ....|. .+.+   ...|...|...+.+.
T Consensus       174 MDLlk~--~~k~~l~~Fl~~d~~~-l~~~~~-~~~~s~Kf~~L~~~i~~~v~d~  223 (273)
T KOG1534|consen  174 MDLLKD--KNKKELERFLNPDEYL-LLEDSE-INLRSPKFKKLTKCIAQLVDDY  223 (273)
T ss_pred             HHHhhh--hhHHHHHHhcCCchhh-hhcccc-cccccHHHHHHHHHHHHHhccc
Confidence            999874  2233344443211111 121111 1222   667777777776544

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.93  E-value=8.5e-06  Score=72.41  Aligned_cols=139  Identities=20%  Similarity=0.309  Sum_probs=70.6

Q ss_pred             EEEEEecCCCChhHHHHhHh-----CCcceeecCCCCce----------eeEEEEE--------------------EecC
Q 014461          141 AVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNTT----------THEVLGV--------------------MTKA  185 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~-----~~~~~~~~~~~~tt----------~~~~~~~--------------------~~~~  185 (424)
                      -+.+.|..|+|||||++.++     +.+.+.+.+..+..          .......                    ....
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~   81 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY   81 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence            36789999999999999998     23333332222200          0001110                    1112


Q ss_pred             --CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          186 --DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       186 --~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                        +....++.+.|...+..      + ......+...-..+.++.|+|+..- ......-..+..++.      .--++|
T Consensus        82 ~~~~d~IiIE~sG~a~p~~------l-~~~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~------~ADvIv  147 (178)
T PF02492_consen   82 EERPDRIIIETSGLADPAP------L-ILQDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIA------FADVIV  147 (178)
T ss_dssp             HGC-SEEEEEEECSSGGGG------H-HHHSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHC------T-SEEE
T ss_pred             CCCcCEEEECCccccccch------h-hhccccccccccccceeEEeccccc-cccccchhhhhhcch------hcCEEE
Confidence              45789999999766532      1 0012222223345899999999532 111111111222222      124889


Q ss_pred             EecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      +||+|+.+..+.+....+.+++.++..+++
T Consensus       148 lnK~D~~~~~~~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  148 LNKIDLVSDEQKIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             EE-GGGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred             EeccccCChhhHHHHHHHHHHHHCCCCEEe
Confidence            999999875423345555555555555443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.90  E-value=0.00023  Score=69.72  Aligned_cols=147  Identities=13%  Similarity=0.192  Sum_probs=76.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce------------ee-EEEEEEe-------------cC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT------------TH-EVLGVMT-------------KA  185 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt------------~~-~~~~~~~-------------~~  185 (424)
                      ++..++++|++|+||||++..|..      .++..+...+...            .. .......             ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            456789999999999999998863      2222222222111            00 0000000             13


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +..++|+||||.....     ......+...... ...|.+++|+++..    ....+.+.+..+...    .+--+|+|
T Consensus       285 ~~D~VLIDTAGr~~~d-----~~~l~EL~~l~~~-~~p~~~~LVLsag~----~~~d~~~i~~~f~~l----~i~glI~T  350 (407)
T PRK12726        285 CVDHILIDTVGRNYLA-----EESVSEISAYTDV-VHPDLTCFTFSSGM----KSADVMTILPKLAEI----PIDGFIIT  350 (407)
T ss_pred             CCCEEEEECCCCCccC-----HHHHHHHHHHhhc-cCCceEEEECCCcc----cHHHHHHHHHhcCcC----CCCEEEEE
Confidence            4689999999985321     1111222222222 24477778887632    223344555544321    23467899


Q ss_pred             cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHH
Q 014461          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (424)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~  305 (424)
                      |.|-...-..+.......    +.+ +..+|  +|++|.+
T Consensus       351 KLDET~~~G~~Lsv~~~t----glP-Isylt--~GQ~Vpd  383 (407)
T PRK12726        351 KMDETTRIGDLYTVMQET----NLP-VLYMT--DGQNITE  383 (407)
T ss_pred             cccCCCCccHHHHHHHHH----CCC-EEEEe--cCCCCCc
Confidence            999876544444443332    333 33332  4666654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.90  E-value=0.00013  Score=65.71  Aligned_cols=145  Identities=18%  Similarity=0.248  Sum_probs=73.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-------------eeEEEEE----------------Eec
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------------THEVLGV----------------MTK  184 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-------------~~~~~~~----------------~~~  184 (424)
                      ..++++|++||||||.+-.|..      .++..++.....-             .-.....                ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            4689999999999999988763      2222211111000             0000000                012


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .+.+++++||||.....     ......+...+... ..+-+++|++++.+... ...+....+.++       +-=+++
T Consensus        82 ~~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~-------~~~lIl  147 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRD-----EELLEELKKLLEAL-NPDEVHLVLSATMGQED-LEQALAFYEAFG-------IDGLIL  147 (196)
T ss_dssp             TTSSEEEEEE-SSSSTH-----HHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHH-HHHHHHHHHHSS-------TCEEEE
T ss_pred             cCCCEEEEecCCcchhh-----HHHHHHHHHHhhhc-CCccceEEEecccChHH-HHHHHHHhhccc-------CceEEE
Confidence            34679999999976321     12222333333333 46789999999643111 112222222221       235679


Q ss_pred             ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHH
Q 014461          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (424)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~  305 (424)
                      +|.|....-..+.......    +.+ +-.+|  +|++|++
T Consensus       148 TKlDet~~~G~~l~~~~~~----~~P-i~~it--~Gq~V~D  181 (196)
T PF00448_consen  148 TKLDETARLGALLSLAYES----GLP-ISYIT--TGQRVDD  181 (196)
T ss_dssp             ESTTSSSTTHHHHHHHHHH----TSE-EEEEE--SSSSTTG
T ss_pred             EeecCCCCcccceeHHHHh----CCC-eEEEE--CCCChhc
Confidence            9999876545554444433    222 43343  5666644

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd00066 G-alpha G protein alpha subunit

Probab=97.90  E-value=0.00018  Score=69.97  Aligned_cols=112  Identities=11%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC--------CchHHHHHHHHHhccC
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT--------SPDSRVIRLIERMGKQ  253 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~--------~~~~~~~~~l~~~~~~  253 (424)
                      +..++..+.+||++|....+.            .....+.++++++||+|.++...        .........++.+...
T Consensus       156 f~~~~~~~~~~DvgGq~~~R~------------kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~  223 (317)
T cd00066         156 FTIKNLKFRMFDVGGQRSERK------------KWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS  223 (317)
T ss_pred             EEecceEEEEECCCCCcccch------------hHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence            445667788999999864321            11234568899999999975211        0111222333332221


Q ss_pred             -CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          254 -APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       254 -~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                       ...+.|+++++||.|+...  .+.       . .++..+||-=.-.+..+++..++|.+...
T Consensus       224 ~~~~~~pill~~NK~D~f~~--ki~-------~-~~l~~~fp~y~g~~~~~~~~~~~i~~~F~  276 (317)
T cd00066         224 RWFANTSIILFLNKKDLFEE--KIK-------K-SPLTDYFPDYTGPPNDYEEAAKFIRKKFL  276 (317)
T ss_pred             ccccCCCEEEEccChHHHHH--hhc-------C-CCccccCCCCCCCCCCHHHHHHHHHHHHH
Confidence             2235899999999998652  111       1 12222332211113568888888877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.90  E-value=2.7e-05  Score=64.10  Aligned_cols=114  Identities=14%  Similarity=0.072  Sum_probs=62.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCC-ceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ++++++|..|+|||+|+.++....+.   ..+. .|..            +..+|.                       .
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~~-----------------------~   42 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYDP-----------------------T   42 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhccc-----------------------c
Confidence            37999999999999999999654442   1111 1100            111110                       1


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      ..+.++.++.|++.+...+.  ...  |...+......+.|.++++||.|+........+...         .++.+||+
T Consensus        43 ~~~s~~~~~~v~~~~~~~s~--~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~---------~~~~~s~~  109 (124)
T smart00010       43 SYESFDVVLQCWRVDDRDSA--DNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL---------EFAETSAK  109 (124)
T ss_pred             ccCCCCEEEEEEEccCHHHH--HHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH---------HHHHHhCC
Confidence            23446788888887543221  111  233222222335788999999998442111111111         24568999


Q ss_pred             CCcChH
Q 014461          299 KGAGLK  304 (424)
Q Consensus       299 ~g~gi~  304 (424)
                      +|.|+.
T Consensus       110 ~~~~~~  115 (124)
T smart00010      110 TPEEGE  115 (124)
T ss_pred             Ccchhh
Confidence            999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>smart00275 G_alpha G protein alpha subunit

Probab=97.90  E-value=0.00011  Score=72.20  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC--------CCchHHHHHHHHHhcc-
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMGK-  252 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~--------~~~~~~~~~~l~~~~~-  252 (424)
                      +..++..+.+||.+|....+.            .....+.++++++||+|.++-.        ..........++.+.. 
T Consensus       179 f~~~~~~~~~~DvgGqr~~R~------------kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~  246 (342)
T smart00275      179 FIVKKLFFRMFDVGGQRSERK------------KWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS  246 (342)
T ss_pred             EEECCeEEEEEecCCchhhhh------------hHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence            445566788999999753321            1123457789999999997521        0111122233333322 


Q ss_pred             CCCCCCcEEEEEecCCCCC
Q 014461          253 QAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       253 ~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ....+.|+++++||.|+..
T Consensus       247 ~~~~~~piil~~NK~D~~~  265 (342)
T smart00275      247 RWFANTSIILFLNKIDLFE  265 (342)
T ss_pred             ccccCCcEEEEEecHHhHH
Confidence            2223589999999999865

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.90  E-value=9.4e-05  Score=72.68  Aligned_cols=131  Identities=16%  Similarity=0.249  Sum_probs=70.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCc--------e-----eeEEEEEE------------e-cC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT--------T-----THEVLGVM------------T-KA  185 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~t--------t-----~~~~~~~~------------~-~~  185 (424)
                      ++..|+++|++|+||||++..|..      .++..+...+..        +     .-......            . ..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            357899999999999999999863      122222221110        0     00000000            0 01


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +..++|+||||.....    ...+ ..+...... ...+.+++|+|++..    ...+.+.++.+...    ..-=++++
T Consensus       320 ~~DvVLIDTaGRs~kd----~~lm-~EL~~~lk~-~~PdevlLVLsATtk----~~d~~~i~~~F~~~----~idglI~T  385 (436)
T PRK11889        320 RVDYILIDTAGKNYRA----SETV-EEMIETMGQ-VEPDYICLTLSASMK----SKDMIEIITNFKDI----HIDGIVFT  385 (436)
T ss_pred             CCCEEEEeCccccCcC----HHHH-HHHHHHHhh-cCCCeEEEEECCccC----hHHHHHHHHHhcCC----CCCEEEEE
Confidence            4689999999975321    1112 222222222 235778899998532    22334555555432    12457899


Q ss_pred             cCCCCCChhhHHHHHHH
Q 014461          266 KVDLVTKKKDLLKVAEQ  282 (424)
Q Consensus       266 K~Dl~~~~~~~~~~~~~  282 (424)
                      |.|-...-..+......
T Consensus       386 KLDET~k~G~iLni~~~  402 (436)
T PRK11889        386 KFDETASSGELLKIPAV  402 (436)
T ss_pred             cccCCCCccHHHHHHHH
Confidence            99987654555544443

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.87  E-value=0.00039  Score=70.95  Aligned_cols=145  Identities=17%  Similarity=0.259  Sum_probs=73.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC--------CcceeecCCCCce------------eeE-EEEEE----------ecC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNTT------------THE-VLGVM----------TKA  185 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~--------~~~~~~~~~~~tt------------~~~-~~~~~----------~~~  185 (424)
                      ..+..++|+|++|+||||++..|..        .++..+.......            ... .....          ...
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR  427 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence            3567899999999999999988864        1222222111100            000 00000          113


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +.+++|+||||......     .....+.. +.... ....++|++++...    ..+.+.++.+...    .+.-+|+|
T Consensus       428 ~~DLVLIDTaG~s~~D~-----~l~eeL~~-L~aa~-~~a~lLVLpAtss~----~Dl~eii~~f~~~----~~~gvILT  492 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDR-----ALAAQLNW-LRAAR-QVTSLLVLPANAHF----SDLDEVVRRFAHA----KPQGVVLT  492 (559)
T ss_pred             cCCEEEecCCCcchhhH-----HHHHHHHH-HHHhh-cCCcEEEEECCCCh----hHHHHHHHHHHhh----CCeEEEEe
Confidence            57899999999863211     11111111 11111 23467788875322    2233444444321    34678999


Q ss_pred             cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (424)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi  303 (424)
                      |+|....-.........    .+.+ +..++  +|++|
T Consensus       493 KlDEt~~lG~aLsv~~~----~~LP-I~yvt--~GQ~V  523 (559)
T PRK12727        493 KLDETGRFGSALSVVVD----HQMP-ITWVT--DGQRV  523 (559)
T ss_pred             cCcCccchhHHHHHHHH----hCCC-EEEEe--CCCCc
Confidence            99986543333333222    2333 44443  56666

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.87  E-value=0.00024  Score=68.74  Aligned_cols=153  Identities=21%  Similarity=0.293  Sum_probs=85.5

Q ss_pred             EEEEecCCCChhHHHHhHhCC----cce-------eecCCC-C---c----eeeEEEEE--Ee---------------cC
Q 014461          142 VGIIGAPNAGKSSIINYMVGT----KVA-------AVSRKT-N---T----TTHEVLGV--MT---------------KA  185 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~----~~~-------~~~~~~-~---t----t~~~~~~~--~~---------------~~  185 (424)
                      .++-|.=|+|||||+|.++..    +++       .++-.. .   .    ......+.  ++               .+
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            568899999999999999842    222       111110 0   0    00111111  11               23


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHH-HHHhhcccccEEEEEEeCCCCCCCchHHHHHHH-HHhccCCCCCCcEEEE
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVE-SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI-ERMGKQAPPKQKRVLC  263 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l-~~~~~~~~~~~p~ilV  263 (424)
                      ....++|.|-|+-.|.+     ....... ..+...-..|.++-|+|+......... ..+.. .++.      .--++|
T Consensus        84 ~~D~ivIEtTGlA~P~p-----v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia------~AD~iv  151 (323)
T COG0523          84 RPDRLVIETTGLADPAP-----VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLA------FADVIV  151 (323)
T ss_pred             CCCEEEEeCCCCCCCHH-----HHHHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHH------hCcEEE
Confidence            45688999999987621     1111011 112223345889999999753332221 11211 1221      114899


Q ss_pred             EecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHH
Q 014461          264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ  308 (424)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~  308 (424)
                      +||+|+.+.. .+......+.+.++..+++.+|. .+.+..+++.
T Consensus       152 lNK~Dlv~~~-~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         152 LNKTDLVDAE-ELEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             EecccCCCHH-HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            9999999864 46666677777777778888877 4444444444

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.84  E-value=0.00091  Score=67.09  Aligned_cols=82  Identities=16%  Similarity=0.293  Sum_probs=48.0

Q ss_pred             ccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          187 TQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      .+++++|.||+...-. +.....-...+.-+..++...++||+|+--. ........+.+++..+..   .+...|+|++
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAERSnVTDLVsq~DP---~GrRTIfVLT  487 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAERSIVTDLVSQMDP---HGRRTIFVLT  487 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-CcchhhhhHHHHHHhcCC---CCCeeEEEEe
Confidence            3589999999975321 1111111122333445677888888887431 112222356666666543   2456899999


Q ss_pred             cCCCCCC
Q 014461          266 KVDLVTK  272 (424)
Q Consensus       266 K~Dl~~~  272 (424)
                      |+|+.+.
T Consensus       488 KVDlAEk  494 (980)
T KOG0447|consen  488 KVDLAEK  494 (980)
T ss_pred             ecchhhh
Confidence            9999764

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.83  E-value=0.00013  Score=62.80  Aligned_cols=20  Identities=45%  Similarity=0.921  Sum_probs=18.0

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      ++++|.+|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998864

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.82  E-value=0.00024  Score=71.14  Aligned_cols=149  Identities=11%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--------ceeecCCC----------------CceeeEEEE-------EEecC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--------VAAVSRKT----------------NTTTHEVLG-------VMTKA  185 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--------~~~~~~~~----------------~tt~~~~~~-------~~~~~  185 (424)
                      ..+..++++|++|+||||++..|.+..        ...+....                +........       .....
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~  268 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR  268 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence            356789999999999999999876521        11000000                000000000       01124


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +..+.++||+|.....     ......+.. +.......-.++|+|++..    ...+.+.+..+...    ..-=++++
T Consensus       269 ~~d~VLIDTaGrsqrd-----~~~~~~l~~-l~~~~~~~~~~LVl~at~~----~~~~~~~~~~f~~~----~~~~~I~T  334 (420)
T PRK14721        269 GKHMVLIDTVGMSQRD-----QMLAEQIAM-LSQCGTQVKHLLLLNATSS----GDTLDEVISAYQGH----GIHGCIIT  334 (420)
T ss_pred             CCCEEEecCCCCCcch-----HHHHHHHHH-HhccCCCceEEEEEcCCCC----HHHHHHHHHHhcCC----CCCEEEEE
Confidence            5678999999976321     111122222 2222334567889998632    23344555554422    12357899


Q ss_pred             cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHH
Q 014461          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL  306 (424)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L  306 (424)
                      |.|-...-..+.......    +.+ +..+  -+|++| +++
T Consensus       335 KlDEt~~~G~~l~~~~~~----~lP-i~yv--t~Gq~VP~Dl  369 (420)
T PRK14721        335 KVDEAASLGIALDAVIRR----KLV-LHYV--TNGQKVPEDL  369 (420)
T ss_pred             eeeCCCCccHHHHHHHHh----CCC-EEEE--ECCCCchhhh
Confidence            999876544444443332    333 4434  357777 444

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.81  E-value=0.00015  Score=69.48  Aligned_cols=156  Identities=15%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcce-----------------------eec-------------CCCCcee--eEEEE
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVA-----------------------AVS-------------RKTNTTT--HEVLG  180 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~-----------------------~~~-------------~~~~tt~--~~~~~  180 (424)
                      ..+|+++|...+|||||+--|......                       .++             ++|...-  -.+..
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            468999999999999999887632110                       000             0110000  00111


Q ss_pred             EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 014461          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR  260 (424)
Q Consensus       181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  260 (424)
                      +......-+.|+|..|...+.....+    .      ..-...|...+++-+..++-....+-+-+--.+      ..|+
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvF----G------MTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL------~VPV  276 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVF----G------MTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL------HVPV  276 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeee----c------cccCCCCceEEEecccccceeccHHhhhhhhhh------cCcE
Confidence            11122234789999998654211100    0      012345888888877654433322222111111      4899


Q ss_pred             EEEEecCCCCCChhhHHHHH---HHHhcC--------------------CC-----CCeEEEEecCCCcChHHHHHHHH
Q 014461          261 VLCMNKVDLVTKKKDLLKVA---EQFKHL--------------------PG-----YERIFMTSGLKGAGLKALTQYLM  311 (424)
Q Consensus       261 ilV~NK~Dl~~~~~~~~~~~---~~~~~~--------------------~~-----~~~~~~iSA~~g~gi~~L~~~i~  311 (424)
                      ++|++|+|.... ..+++.+   ..+.+.                    .+     ..++|.+|..+|.|++-|..+|-
T Consensus       277 fvVVTKIDMCPA-NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN  354 (641)
T KOG0463|consen  277 FVVVTKIDMCPA-NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN  354 (641)
T ss_pred             EEEEEeeccCcH-HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence            999999999874 2333322   222211                    11     23689999999999987766553

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=4.5e-05  Score=73.72  Aligned_cols=155  Identities=21%  Similarity=0.252  Sum_probs=90.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc--------------------------e----eecCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV--------------------------A----AVSRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~--------------------------~----~~~~~~~tt~~~~~~~~~~~~  186 (424)
                      ....++.|+|+-.+||||+-..++....                          +    .-...-+.|...-...+....
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            4578999999999999998887764110                          0    001112334444444566667


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-----CC--chHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-----TS--PDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-----~~--~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      ..+.++|+||.-.+            +......+.+||+.++|+.+..+-     ..  +...-..+.+..+     -..
T Consensus       157 ~~ftiLDApGHk~f------------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~  219 (501)
T KOG0459|consen  157 KRFTILDAPGHKSF------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKH  219 (501)
T ss_pred             eeEEeeccCccccc------------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cce
Confidence            78999999998654            223345567889999999884221     10  0111111122222     134


Q ss_pred             EEEEEecCCCCCCh---hhH---HHHHHHHhcCCCC-----CeEEEEecCCCcChHHHHH
Q 014461          260 RVLCMNKVDLVTKK---KDL---LKVAEQFKHLPGY-----ERIFMTSGLKGAGLKALTQ  308 (424)
Q Consensus       260 ~ilV~NK~Dl~~~~---~~~---~~~~~~~~~~~~~-----~~~~~iSA~~g~gi~~L~~  308 (424)
                      .|+++||+|-...+   +..   .+.+..+....++     ..++++|..+|.++.+..+
T Consensus       220 lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  220 LIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             EEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            78999999976431   111   1222222222222     2589999999999988665

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.77  E-value=0.00049  Score=69.44  Aligned_cols=149  Identities=16%  Similarity=0.178  Sum_probs=76.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-------------eeEEEEEE--------------e
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------------THEVLGVM--------------T  183 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-------------~~~~~~~~--------------~  183 (424)
                      .++..|+++|.+|+||||++..|..      .++..+.......             ........              .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            3567899999999999999988752      2222222111100             00000000              0


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      ..+..++++||||.....     ......+.. +..+..+|.+++|+|++.+     ....+..+.+....   ...-+|
T Consensus       173 ~~~~DvVIIDTAGr~~~d-----~~lm~El~~-l~~~~~pdevlLVvda~~g-----q~av~~a~~F~~~l---~i~gvI  238 (437)
T PRK00771        173 FKKADVIIVDTAGRHALE-----EDLIEEMKE-IKEAVKPDEVLLVIDATIG-----QQAKNQAKAFHEAV---GIGGII  238 (437)
T ss_pred             hhcCCEEEEECCCcccch-----HHHHHHHHH-HHHHhcccceeEEEecccc-----HHHHHHHHHHHhcC---CCCEEE
Confidence            123479999999976321     111111222 2234457899999999653     12223344433211   123578


Q ss_pred             EecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                      +||+|....-..........    +.+ +..++  +|+.+++|
T Consensus       239 lTKlD~~a~~G~~ls~~~~~----~~P-i~fig--~Ge~v~Dl  274 (437)
T PRK00771        239 ITKLDGTAKGGGALSAVAET----GAP-IKFIG--TGEKIDDL  274 (437)
T ss_pred             EecccCCCcccHHHHHHHHH----CcC-EEEEe--cCCCcccC
Confidence            99999765433443333322    333 44443  46666554

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.00037  Score=74.22  Aligned_cols=151  Identities=13%  Similarity=0.190  Sum_probs=78.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc--------ceeecCCCCc---e--------ee--EEEEE----------EecCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK--------VAAVSRKTNT---T--------TH--EVLGV----------MTKAD  186 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~--------~~~~~~~~~t---t--------~~--~~~~~----------~~~~~  186 (424)
                      ++..++++|++||||||++..|.+..        +..+......   .        ..  .....          -...+
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~  263 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD  263 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence            35678999999999999999887532        1111111100   0        00  00000          01235


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..++||||||.....     .......... ......+-+++|+|++.    ....+.+.++.+...... .+-=+|++|
T Consensus       264 ~D~VLIDTAGRs~~d-----~~l~eel~~l-~~~~~p~e~~LVLsAt~----~~~~l~~i~~~f~~~~~~-~i~glIlTK  332 (767)
T PRK14723        264 KHLVLIDTVGMSQRD-----RNVSEQIAML-CGVGRPVRRLLLLNAAS----HGDTLNEVVHAYRHGAGE-DVDGCIITK  332 (767)
T ss_pred             CCEEEEeCCCCCccC-----HHHHHHHHHH-hccCCCCeEEEEECCCC----cHHHHHHHHHHHhhcccC-CCCEEEEec
Confidence            679999999975322     1111112211 12334567899999863    223344445544321100 123578999


Q ss_pred             CCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHH
Q 014461          267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL  306 (424)
Q Consensus       267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L  306 (424)
                      .|-...-..+.......    +.+ +..++  +|++| ++|
T Consensus       333 LDEt~~~G~iL~i~~~~----~lP-I~yit--~GQ~VPdDL  366 (767)
T PRK14723        333 LDEATHLGPALDTVIRH----RLP-VHYVS--TGQKVPEHL  366 (767)
T ss_pred             cCCCCCccHHHHHHHHH----CCC-eEEEe--cCCCChhhc
Confidence            99876544555444433    333 44443  57777 443

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.70  E-value=0.00038  Score=70.79  Aligned_cols=148  Identities=13%  Similarity=0.205  Sum_probs=75.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC--------cceeecCCCC-ce----------e-e-EEEE----------EEecCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKTN-TT----------T-H-EVLG----------VMTKAD  186 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~--------~~~~~~~~~~-tt----------~-~-~~~~----------~~~~~~  186 (424)
                      ++..++++|++||||||++..|.+.        ++..+...+. .+          . . ....          .....+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d  334 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN  334 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence            4567899999999999999988742        2222221111 00          0 0 0000          011234


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+.++||+|.....     ........ .+.......-.++|+|++.+    ...+.+.++.+...    ...-+|+||
T Consensus       335 ~d~VLIDTaGr~~~d-----~~~~e~~~-~l~~~~~p~e~~LVLdAt~~----~~~l~~i~~~f~~~----~~~g~IlTK  400 (484)
T PRK06995        335 KHIVLIDTIGMSQRD-----RMVSEQIA-MLHGAGAPVKRLLLLNATSH----GDTLNEVVQAYRGP----GLAGCILTK  400 (484)
T ss_pred             CCeEEeCCCCcChhh-----HHHHHHHH-HHhccCCCCeeEEEEeCCCc----HHHHHHHHHHhccC----CCCEEEEeC
Confidence            568999999965321     11111111 11111112337889998532    23344445444322    234577999


Q ss_pred             CCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHH
Q 014461          267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL  306 (424)
Q Consensus       267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L  306 (424)
                      +|-...-..+.......    +.+ +..+  -+|++| ++|
T Consensus       401 lDet~~~G~~l~i~~~~----~lP-I~yv--t~GQ~VPeDL  434 (484)
T PRK06995        401 LDEAASLGGALDVVIRY----KLP-LHYV--SNGQRVPEDL  434 (484)
T ss_pred             CCCcccchHHHHHHHHH----CCC-eEEE--ecCCCChhhh
Confidence            99876544454444433    333 4444  367887 554

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.70  E-value=0.00033  Score=67.96  Aligned_cols=94  Identities=9%  Similarity=0.136  Sum_probs=50.2

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHH--HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRV--ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~--~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      ...+++.|.|..++.      .+...+  ...+...-..|.++.|+|+......... ......++..      --++|+
T Consensus        91 ~d~IvIEttG~a~p~------~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~-~~~~~~Qi~~------AD~Ivl  157 (318)
T PRK11537         91 FDRLVIECTGMADPG------PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGY------ADRILL  157 (318)
T ss_pred             CCEEEEECCCccCHH------HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-cHHHHHHHHh------CCEEEE
Confidence            457899999987542      111111  0111122235889999999642211111 1111122221      148899


Q ss_pred             ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ||+|+....   ......++..++..+++.++
T Consensus       158 nK~Dl~~~~---~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        158 TKTDVAGEA---EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             eccccCCHH---HHHHHHHHHhCCCCEEEEec
Confidence            999998743   34455556666666676553

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.69  E-value=0.00024  Score=69.77  Aligned_cols=129  Identities=15%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcc--eeecCCCCceeeEEE-------------------EE----------EecCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVL-------------------GV----------MTKAD  186 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~--~~~~~~~~tt~~~~~-------------------~~----------~~~~~  186 (424)
                      ++..|++||++||||||.+-.|.....  ..-....-.|.++.+                   ..          ....+
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            377899999999999999988764322  000000011111111                   00          11235


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ++++|+||.|.....     ......++...... ...-+.+|++++.    ....+.+.++.+.....    -=++++|
T Consensus       282 ~d~ILVDTaGrs~~D-----~~~i~el~~~~~~~-~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i----~~~I~TK  347 (407)
T COG1419         282 CDVILVDTAGRSQYD-----KEKIEELKELIDVS-HSIEVYLVLSATT----KYEDLKEIIKQFSLFPI----DGLIFTK  347 (407)
T ss_pred             CCEEEEeCCCCCccC-----HHHHHHHHHHHhcc-ccceEEEEEecCc----chHHHHHHHHHhccCCc----ceeEEEc
Confidence            689999999965321     11122233333333 3345667788753    23445566666653321    2467899


Q ss_pred             CCCCCChhhHHHHH
Q 014461          267 VDLVTKKKDLLKVA  280 (424)
Q Consensus       267 ~Dl~~~~~~~~~~~  280 (424)
                      +|-...-..+...+
T Consensus       348 lDET~s~G~~~s~~  361 (407)
T COG1419         348 LDETTSLGNLFSLM  361 (407)
T ss_pred             ccccCchhHHHHHH
Confidence            99876544444433

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.69  E-value=0.0011  Score=65.24  Aligned_cols=169  Identities=17%  Similarity=0.298  Sum_probs=90.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC-----------------cceeecCCCCceeeEE----------EEEE-ecCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT-----------------KVAAVSRKTNTTTHEV----------LGVM-TKADT  187 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~-----------------~~~~~~~~~~tt~~~~----------~~~~-~~~~~  187 (424)
                      ....+.+++||+--+|||||+.++...                 ..++  ...|.|..++          .-.+ ..-..
T Consensus        14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQ--S~aGktImTTEPKFiP~eAv~I~l~~~~~~   91 (492)
T PF09547_consen   14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQ--SGAGKTIMTTEPKFIPNEAVEITLDDGIKV   91 (492)
T ss_pred             cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCc--CCCCCceeccCCcccCCcceEEEecCCceE
Confidence            346789999999999999999998741                 1111  1112121111          1111 11234


Q ss_pred             cEEEEeCCCcccCC-CCCChhhhhhHHHHHH----------------hhccccc--EEEEEEeCCCCCCC--------ch
Q 014461          188 QICIFDTPGLMLNK-SGYSHKDVKVRVESAW----------------SAVNLFE--VLMVVFDVHRHLTS--------PD  240 (424)
Q Consensus       188 ~i~l~DtpG~~~~~-~~~~~~~~~~~~~~~~----------------~~~~~aD--~vl~VvD~~~~~~~--------~~  240 (424)
                      ++.++|+.|+.-+. .++...+-..++...|                ..+.+-.  ++++--|.|  +++        .+
T Consensus        92 kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGS--i~dipRe~Y~eAE  169 (492)
T PF09547_consen   92 KVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGS--ITDIPRENYVEAE  169 (492)
T ss_pred             EEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCC--ccCCChHHHHHHH
Confidence            68899999986332 1111111111222111                1122212  333444443  222        12


Q ss_pred             HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          241 SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ..+.+-|++++      +|+++++|=.+=..  .+..++.+++.+.++.+ ++++++.. -.-+++...|.+.+.+.|
T Consensus       170 ervI~ELk~ig------KPFvillNs~~P~s--~et~~L~~eL~ekY~vp-Vlpvnc~~-l~~~DI~~Il~~vLyEFP  237 (492)
T PF09547_consen  170 ERVIEELKEIG------KPFVILLNSTKPYS--EETQELAEELEEKYDVP-VLPVNCEQ-LREEDITRILEEVLYEFP  237 (492)
T ss_pred             HHHHHHHHHhC------CCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCc-EEEeehHH-cCHHHHHHHHHHHHhcCC
Confidence            24445555553      89999999887443  56677788888888887 88888743 233444444445554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.66  E-value=2.6e-05  Score=70.26  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=42.7

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      .....++|.||+.+..   .+++....+-+.+....-.=+++.++|+- -.+.+...+..++-.+.....-..|-|=|+.
T Consensus        96 ~~~Y~lFDcPGQVELf---t~h~~l~~I~~~Lek~~~rl~~V~LiDs~-ycs~p~~~iS~lL~sl~tMl~melphVNvlS  171 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELF---THHDSLNKIFRKLEKLDYRLVAVNLIDSH-YCSDPSKFISSLLVSLATMLHMELPHVNVLS  171 (290)
T ss_pred             cCcEEEEeCCCcEEEE---eccchHHHHHHHHHHcCceEEEEEeeece-eeCChHHHHHHHHHHHHHHHhhcccchhhhh
Confidence            3568899999998753   22332222222233333233455566652 2333433333333222211112367888999


Q ss_pred             cCCCCCC
Q 014461          266 KVDLVTK  272 (424)
Q Consensus       266 K~Dl~~~  272 (424)
                      |+|+...
T Consensus       172 K~Dl~~~  178 (290)
T KOG1533|consen  172 KADLLKK  178 (290)
T ss_pred             HhHHHHh
Confidence            9998754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.64  E-value=0.00016  Score=63.85  Aligned_cols=58  Identities=26%  Similarity=0.345  Sum_probs=41.4

Q ss_pred             cEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461          224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (424)
Q Consensus       224 D~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~  286 (424)
                      |++++|+|+..++...+..+.+.+. +..   .+.|+++|+||+|+.+. ..+.++.+.+.+.
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~---~~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~   58 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVL-QAG---GNKKLVLVLNKIDLVPK-ENVEKWLKYLRRE   58 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHH-hcc---CCCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence            7899999998777766666666532 111   13789999999999864 5566677777654

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=0.0028  Score=63.06  Aligned_cols=150  Identities=13%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC----------CcceeecCCCCce-------------eeEEEEE----------Eec
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVSRKTNTT-------------THEVLGV----------MTK  184 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~----------~~~~~~~~~~~tt-------------~~~~~~~----------~~~  184 (424)
                      .+..|+++|++|+||||.+..|..          .++..++..+...             .-.....          -..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            456899999999999999987752          1222222111100             0000100          012


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .+..++++||+|.....    ...+ ..+...+.......-+++|+|++.+    ...+.+.+..+...    .+-=+++
T Consensus       253 ~~~DlVLIDTaGr~~~~----~~~l-~el~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~----~~~~~I~  319 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKD----FMKL-AEMKELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPF----SYKTVIF  319 (388)
T ss_pred             CCCCEEEEcCCCCCccC----HHHH-HHHHHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCC----CCCEEEE
Confidence            46789999999975321    1111 1233333333322358899999643    23344555555421    1345789


Q ss_pred             ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHHH
Q 014461          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT  307 (424)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L~  307 (424)
                      +|.|-...-..+.......    +.+ +..+  -+|++| +++.
T Consensus       320 TKlDet~~~G~~l~~~~~~----~~P-i~yi--t~Gq~vPeDl~  356 (388)
T PRK12723        320 TKLDETTCVGNLISLIYEM----RKE-VSYV--TDGQIVPHNIS  356 (388)
T ss_pred             EeccCCCcchHHHHHHHHH----CCC-EEEE--eCCCCChhhhh
Confidence            9999876544554444333    233 3333  367887 5554

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=0.0011  Score=65.90  Aligned_cols=131  Identities=15%  Similarity=0.224  Sum_probs=69.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC-------cceeecCCCCce-----------e-e-EEEEE---------EecCCcc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT-------KVAAVSRKTNTT-----------T-H-EVLGV---------MTKADTQ  188 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~-------~~~~~~~~~~tt-----------~-~-~~~~~---------~~~~~~~  188 (424)
                      +...++++|++||||||++..|...       .+..+...+..+           . . .....         +...+..
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D  301 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE  301 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence            3456899999999999999988642       122111111000           0 0 00000         0114678


Q ss_pred             EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc--cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN--LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ++++||||.....     ......+...+....  ...-+++|+|++.+    ...+.+.+..+...    .+-=+|++|
T Consensus       302 ~VLIDTaGr~~rd-----~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~----~~~~~~~~~~f~~~----~~~glIlTK  368 (432)
T PRK12724        302 LILIDTAGYSHRN-----LEQLERMQSFYSCFGEKDSVENLLVLSSTSS----YHHTLTVLKAYESL----NYRRILLTK  368 (432)
T ss_pred             EEEEeCCCCCccC-----HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC----HHHHHHHHHHhcCC----CCCEEEEEc
Confidence            9999999975321     111122333333221  23467889998643    22344444444321    224578999


Q ss_pred             CCCCCChhhHHHHHH
Q 014461          267 VDLVTKKKDLLKVAE  281 (424)
Q Consensus       267 ~Dl~~~~~~~~~~~~  281 (424)
                      .|-...-..+.....
T Consensus       369 LDEt~~~G~il~i~~  383 (432)
T PRK12724        369 LDEADFLGSFLELAD  383 (432)
T ss_pred             ccCCCCccHHHHHHH
Confidence            998765444444433

>PRK10867 signal recognition particle protein; Provisional

Probab=97.59  E-value=0.0022  Score=64.66  Aligned_cols=128  Identities=13%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh-------CCcceeecCCCCcee-----------e--EEEEE---------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV-------GTKVAAVSRKTNTTT-----------H--EVLGV---------------  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~-------~~~~~~~~~~~~tt~-----------~--~~~~~---------------  181 (424)
                      .++..|+++|.+|+||||++-.|.       |.++..++..+....           .  .....               
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~  177 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE  177 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence            346788999999999999666554       223332222211100           0  00000               


Q ss_pred             -EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 014461          182 -MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR  260 (424)
Q Consensus       182 -~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  260 (424)
                       ....++.++++||||.....     ......+..... .-..+.+++|+|+..+     ....+..+.+....   ...
T Consensus       178 ~a~~~~~DvVIIDTaGrl~~d-----~~lm~eL~~i~~-~v~p~evllVlda~~g-----q~av~~a~~F~~~~---~i~  243 (433)
T PRK10867        178 EAKENGYDVVIVDTAGRLHID-----EELMDELKAIKA-AVNPDEILLVVDAMTG-----QDAVNTAKAFNEAL---GLT  243 (433)
T ss_pred             HHHhcCCCEEEEeCCCCcccC-----HHHHHHHHHHHH-hhCCCeEEEEEecccH-----HHHHHHHHHHHhhC---CCC
Confidence             01134679999999975321     111112222222 2346778999998531     22223333333211   123


Q ss_pred             EEEEecCCCCCChhhHHH
Q 014461          261 VLCMNKVDLVTKKKDLLK  278 (424)
Q Consensus       261 ilV~NK~Dl~~~~~~~~~  278 (424)
                      -+|+||.|-.........
T Consensus       244 giIlTKlD~~~rgG~als  261 (433)
T PRK10867        244 GVILTKLDGDARGGAALS  261 (433)
T ss_pred             EEEEeCccCcccccHHHH
Confidence            578899996543333333

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.57  E-value=0.0019  Score=56.82  Aligned_cols=77  Identities=12%  Similarity=0.151  Sum_probs=40.4

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +..++++||||.....     ......+... ......|.+++|+|+...  .  . ..+....+....  + ..-+|+|
T Consensus        82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l-~~~~~~~~~~lVv~~~~~--~--~-~~~~~~~~~~~~--~-~~~vilt  147 (173)
T cd03115          82 NFDVVIVDTAGRLQID-----ENLMEELKKI-KRVVKPDEVLLVVDAMTG--Q--D-AVNQAKAFNEAL--G-ITGVILT  147 (173)
T ss_pred             CCCEEEEECcccchhh-----HHHHHHHHHH-HhhcCCCeEEEEEECCCC--h--H-HHHHHHHHHhhC--C-CCEEEEE
Confidence            5568999999975321     1111222222 122347999999998522  1  1 112223221111  1 2567889


Q ss_pred             cCCCCCChhhH
Q 014461          266 KVDLVTKKKDL  276 (424)
Q Consensus       266 K~Dl~~~~~~~  276 (424)
                      |+|........
T Consensus       148 k~D~~~~~g~~  158 (173)
T cd03115         148 KLDGDARGGAA  158 (173)
T ss_pred             CCcCCCCcchh
Confidence            99987654333

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.57  E-value=0.0044  Score=53.08  Aligned_cols=79  Identities=10%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..||++  ++|--.++......+.+.+++....   +.|++.++.+-+.-       ..++.+....+.  ++.   .+
T Consensus        98 ~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~-------P~v~~ik~~~~v--~v~---lt  160 (179)
T COG1618          98 LEEADVI--IIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRH-------PLVQRIKKLGGV--YVF---LT  160 (179)
T ss_pred             hhcCCEE--EEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCC-------hHHHHhhhcCCE--EEE---Ec
Confidence            4456865  4675445544445566666665433   46788888776541       234555544332  222   56


Q ss_pred             CcChHHHHHHHHHhcc
Q 014461          300 GAGLKALTQYLMEQAV  315 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~  315 (424)
                      -.|=+.++..|...+.
T Consensus       161 ~~NR~~i~~~Il~~L~  176 (179)
T COG1618         161 PENRNRILNEILSVLK  176 (179)
T ss_pred             cchhhHHHHHHHHHhc
Confidence            6676788888777663

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.55  E-value=0.0012  Score=64.83  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=56.6

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHH-HHhhcccccEEEEEEeCCCCCCCc--------------------hHHHH
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVNLFEVLMVVFDVHRHLTSP--------------------DSRVI  244 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~aD~vl~VvD~~~~~~~~--------------------~~~~~  244 (424)
                      ....+++.|.|...+.      .+...+.. .+...-..|.++.|+|+.......                    ...+.
T Consensus        92 ~~d~IvIEtsG~a~P~------~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (341)
T TIGR02475        92 RPDHILIETSGLALPK------PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLE  165 (341)
T ss_pred             CCCEEEEeCCCCCCHH------HHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHH
Confidence            3567899999987652      22122210 111122458899999996321100                    00011


Q ss_pred             HH-HHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCC-CCeEEEEecCCCcChHHHHH
Q 014461          245 RL-IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-YERIFMTSGLKGAGLKALTQ  308 (424)
Q Consensus       245 ~~-l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~iSA~~g~gi~~L~~  308 (424)
                      .. ..++.      .--++|+||+|+... +.+......+....+ ...++.++ ........+++
T Consensus       166 ~~~~~Qi~------~AD~IvlnK~Dl~~~-~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       166 ELFEDQLA------CADLVILNKADLLDA-AGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             HHHHHHHH------hCCEEEEeccccCCH-HHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence            11 12222      124889999999875 456666666666444 34566553 22344455444

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>TIGR00959 ffh signal recognition particle protein

Probab=97.50  E-value=0.0035  Score=63.13  Aligned_cols=80  Identities=11%  Similarity=0.150  Sum_probs=41.3

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .++.++++||||.....     ......+..... .-..|.+++|+|+..+     ....+....+....   ...=+|+
T Consensus       181 ~~~DvVIIDTaGr~~~d-----~~l~~eL~~i~~-~~~p~e~lLVvda~tg-----q~~~~~a~~f~~~v---~i~giIl  246 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQID-----EELMEELAAIKE-ILNPDEILLVVDAMTG-----QDAVNTAKTFNERL---GLTGVVL  246 (428)
T ss_pred             cCCCEEEEeCCCccccC-----HHHHHHHHHHHH-hhCCceEEEEEeccch-----HHHHHHHHHHHhhC---CCCEEEE
Confidence            34679999999975321     111122222222 3346888999998532     12222333332111   1235679


Q ss_pred             ecCCCCCChhhHHH
Q 014461          265 NKVDLVTKKKDLLK  278 (424)
Q Consensus       265 NK~Dl~~~~~~~~~  278 (424)
                      ||+|-.........
T Consensus       247 TKlD~~~~~G~~ls  260 (428)
T TIGR00959       247 TKLDGDARGGAALS  260 (428)
T ss_pred             eCccCcccccHHHH
Confidence            99996543333333

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.00032  Score=69.64  Aligned_cols=114  Identities=23%  Similarity=0.270  Sum_probs=69.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC---------------ceeeEE-EEE---------------EecC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN---------------TTTHEV-LGV---------------MTKA  185 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~---------------tt~~~~-~~~---------------~~~~  185 (424)
                      ....++.++.+...|||||..+|....--..+...+               .|.... ...               -...
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            456678899999999999999998532211112222               111111 110               0112


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEE
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~  264 (424)
                      +.-++++|.||+.++.+.         +   ...++-.|..++|+|.-++.--+.+.++ +.+.+.       +.-++++
T Consensus        97 ~FLiNLIDSPGHVDFSSE---------V---TAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER-------IkPvlv~  157 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSE---------V---TAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-------IKPVLVM  157 (842)
T ss_pred             ceeEEeccCCCcccchhh---------h---hheeEeccCcEEEEEccCceEechHHHHHHHHHhh-------ccceEEe
Confidence            345889999999876421         2   2346677999999998777655555443 333321       2236789


Q ss_pred             ecCCC
Q 014461          265 NKVDL  269 (424)
Q Consensus       265 NK~Dl  269 (424)
                      ||+|.
T Consensus       158 NK~DR  162 (842)
T KOG0469|consen  158 NKMDR  162 (842)
T ss_pred             ehhhH
Confidence            99995

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.43  E-value=0.00098  Score=64.66  Aligned_cols=79  Identities=16%  Similarity=0.242  Sum_probs=49.1

Q ss_pred             EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC--CCCchH---HH---HHHHHHhcc
Q 014461          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--LTSPDS---RV---IRLIERMGK  252 (424)
Q Consensus       181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~--~~~~~~---~~---~~~l~~~~~  252 (424)
                      .+...+..+.++|.+|+....            +.......++++|+||++.++-  ....+.   .+   +.+.+.+..
T Consensus       189 ~F~~k~~~f~~~DvGGQRseR------------rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n  256 (354)
T KOG0082|consen  189 EFTIKGLKFRMFDVGGQRSER------------KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN  256 (354)
T ss_pred             EEEeCCCceEEEeCCCcHHHh------------hhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence            356677889999999976432            2223456888999999998731  111121   12   222222221


Q ss_pred             -CCCCCCcEEEEEecCCCCC
Q 014461          253 -QAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       253 -~~~~~~p~ilV~NK~Dl~~  271 (424)
                       ....+.++|+.+||.|+-.
T Consensus       257 ~~~F~~tsiiLFLNK~DLFe  276 (354)
T KOG0082|consen  257 NKWFANTSIILFLNKKDLFE  276 (354)
T ss_pred             CcccccCcEEEEeecHHHHH
Confidence             2223578999999999976

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.00066  Score=75.30  Aligned_cols=126  Identities=14%  Similarity=0.200  Sum_probs=69.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceee-------cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~-------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      +=-+|+|+||+||||++..- |.++...       ...++ |+++-.    +-+..-++|||.|-..........+ ...
T Consensus       126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~-~~~  198 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVD-RAE  198 (1188)
T ss_pred             CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhh-HHH
Confidence            34579999999999998763 3332211       11112 333221    2344568999999764432111111 111


Q ss_pred             HHH------HHhhcccccEEEEEEeCCCCCCCchHH-------HHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          213 VES------AWSAVNLFEVLMVVFDVHRHLTSPDSR-------VIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       213 ~~~------~~~~~~~aD~vl~VvD~~~~~~~~~~~-------~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ...      -+......|+|++.+|+++-.+.....       +-.-|.++...-.-..|+++++||.|+...
T Consensus       199 W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         199 WLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence            111      112235569999999987544433321       222245554443445899999999999874

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.36  E-value=0.00084  Score=67.79  Aligned_cols=145  Identities=15%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC--------CcceeecCCCCce------------e-eEEEEE----------EecCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNTT------------T-HEVLGV----------MTKADT  187 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~--------~~~~~~~~~~~tt------------~-~~~~~~----------~~~~~~  187 (424)
                      +..++|+|++||||||++..|..        .++..+...+...            . -.....          -...+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            45789999999999998887643        1222222222100            0 000000          012356


Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~  267 (424)
                      .++++||||.....    ... ...+...+.......-+.+|++++..    ...+.+.+..+...    .+--+++||+
T Consensus       301 DlVlIDt~G~~~~d----~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~----~~~l~~~~~~f~~~----~~~~vI~TKl  367 (424)
T PRK05703        301 DVILIDTAGRSQRD----KRL-IEELKALIEFSGEPIDVYLVLSATTK----YEDLKDIYKHFSRL----PLDGLIFTKL  367 (424)
T ss_pred             CEEEEeCCCCCCCC----HHH-HHHHHHHHhccCCCCeEEEEEECCCC----HHHHHHHHHHhCCC----CCCEEEEecc
Confidence            89999999975321    111 11222222212223567788888532    23344444444421    1235789999


Q ss_pred             CCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461          268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (424)
Q Consensus       268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi  303 (424)
                      |-...-..+...+...    +.+ +..+  -+|++|
T Consensus       368 Det~~~G~i~~~~~~~----~lP-v~yi--t~Gq~V  396 (424)
T PRK05703        368 DETSSLGSILSLLIES----GLP-ISYL--TNGQRV  396 (424)
T ss_pred             cccccccHHHHHHHHH----CCC-EEEE--eCCCCC
Confidence            9865433333333222    333 3334  356775

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.29  E-value=0.005  Score=58.22  Aligned_cols=146  Identities=16%  Similarity=0.242  Sum_probs=77.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC------cceeecCCCCc--------ee----e-EEEEEE-------------ecC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKTNT--------TT----H-EVLGVM-------------TKA  185 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~------~~~~~~~~~~t--------t~----~-~~~~~~-------------~~~  185 (424)
                      +..+++++|++|+||||++..+.+.      .+..+...+..        +.    . ......             ...
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            4578999999999999999987542      12211111110        00    0 000000             012


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +..+.++||||.....    ...+ ..+...+. ....|.+++|+|++..    .....+.++.+...    .+-=++++
T Consensus       154 ~~D~ViIDt~Gr~~~~----~~~l-~el~~~~~-~~~~~~~~LVl~a~~~----~~d~~~~~~~f~~~----~~~~~I~T  219 (270)
T PRK06731        154 RVDYILIDTAGKNYRA----SETV-EEMIETMG-QVEPDYICLTLSASMK----SKDMIEIITNFKDI----HIDGIVFT  219 (270)
T ss_pred             CCCEEEEECCCCCcCC----HHHH-HHHHHHHh-hhCCCeEEEEEcCccC----HHHHHHHHHHhCCC----CCCEEEEE
Confidence            5689999999976321    1112 22222222 2345678999998532    23344556665432    23467899


Q ss_pred             cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChH
Q 014461          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK  304 (424)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~  304 (424)
                      |.|....-..+.......    +.+ +..+  -+|+++.
T Consensus       220 KlDet~~~G~~l~~~~~~----~~P-i~~i--t~Gq~vp  251 (270)
T PRK06731        220 KFDETASSGELLKIPAVS----SAP-IVLM--TDGQDVK  251 (270)
T ss_pred             eecCCCCccHHHHHHHHH----CcC-EEEE--eCCCCCC
Confidence            999876544444443332    333 4334  2466654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.24  E-value=0.002  Score=54.67  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=55.9

Q ss_pred             EEecCCCChhHHHHhHhC------CcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          144 IIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       144 vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .-|.+|+||||+.-.+..      .....+.-.++.+.         -.+.+.++|||+....              ...
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~~--------------~~~   61 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGISD--------------NVL   61 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCCH--------------HHH
Confidence            456889999999776652      22222222211110         1167899999985421              112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      ..+..+|.++++++.+...-.......+.+.+..    ...++.+|+|+++..
T Consensus        62 ~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~----~~~~~~lVvN~~~~~  110 (139)
T cd02038          62 DFFLAADEVIVVTTPEPTSITDAYALIKKLAKQL----RVLNFRVVVNRAESP  110 (139)
T ss_pred             HHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCH
Confidence            3456689999999985311111123334443322    234678999999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.23  E-value=0.002  Score=61.63  Aligned_cols=151  Identities=17%  Similarity=0.250  Sum_probs=78.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC------Ccce-------------------------eecCCCCceeeEEEEE---
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG------TKVA-------------------------AVSRKTNTTTHEVLGV---  181 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~------~~~~-------------------------~~~~~~~tt~~~~~~~---  181 (424)
                      ..++..++++|-+|+||||-+-.|..      .++.                         .++...+  .++....   
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G--~DpAaVafDA  213 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEG--ADPAAVAFDA  213 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCC--CCcHHHHHHH
Confidence            34578899999999999999988763      1111                         0111000  0000000   


Q ss_pred             ---EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccccc-----EEEEEEeCCCCCCCchHHHHHHHHHhccC
Q 014461          182 ---MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFE-----VLMVVFDVHRHLTSPDSRVIRLIERMGKQ  253 (424)
Q Consensus       182 ---~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD-----~vl~VvD~~~~~~~~~~~~~~~l~~~~~~  253 (424)
                         -...+..+.++||.|-...+.     .+...++.....+...+     -+++++|++-+...     +...+.+...
T Consensus       214 i~~Akar~~DvvliDTAGRLhnk~-----nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~ea  283 (340)
T COG0552         214 IQAAKARGIDVVLIDTAGRLHNKK-----NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEA  283 (340)
T ss_pred             HHHHHHcCCCEEEEeCcccccCch-----hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHh
Confidence               012467799999999875532     22222333333333333     38888999754221     1122222211


Q ss_pred             CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHH
Q 014461          254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ  308 (424)
Q Consensus       254 ~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~  308 (424)
                      ..   -.=++++|+|-...-..+..+...+    +.+ +..+  --|+++++|..
T Consensus       284 v~---l~GiIlTKlDgtAKGG~il~I~~~l----~~P-I~fi--GvGE~~~DL~~  328 (340)
T COG0552         284 VG---LDGIILTKLDGTAKGGIILSIAYEL----GIP-IKFI--GVGEGYDDLRP  328 (340)
T ss_pred             cC---CceEEEEecccCCCcceeeeHHHHh----CCC-EEEE--eCCCChhhccc
Confidence            11   1247899999544323344433333    333 5555  34788887653

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.22  E-value=0.0012  Score=60.99  Aligned_cols=129  Identities=16%  Similarity=0.217  Sum_probs=69.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee---ecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCC-CChhhh-
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSG-YSHKDV-  209 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~---~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~-~~~~~~-  209 (424)
                      .-.++|+-||.+|.|||||++.|.+.++..   ....+........+.+...+.  .+.++||.|+.+.-.. -.+..+ 
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            346899999999999999999999876641   111122222222222222333  4789999999764321 111111 


Q ss_pred             ---hh----------HHHHHHhhcc--cccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          210 ---KV----------RVESAWSAVN--LFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       210 ---~~----------~~~~~~~~~~--~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                         ..          .+++++..+.  ..+++++.+..+.+.... +...   ++.+..    ...+|-|+-|.|....
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvt---mk~Lds----kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVT---MKKLDS----KVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHH---HHHHhh----hhhhHHHHHHhhhhhH
Confidence               11          1223333333  347888888876432221 1111   222221    2446778889998764

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.12  E-value=0.0053  Score=54.29  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      ..+.++++|||+....              .....+..+|.+++++..+.........+.+.++..      +.|+.+|+
T Consensus        91 ~~~d~viiDtpp~~~~--------------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~------~~~~~vV~  150 (179)
T cd03110          91 EGAELIIIDGPPGIGC--------------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHF------GIPVGVVI  150 (179)
T ss_pred             cCCCEEEEECcCCCcH--------------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHc------CCCEEEEE
Confidence            5678999999975421              112334668999999988632111122344444433      25688999


Q ss_pred             ecCCCCC
Q 014461          265 NKVDLVT  271 (424)
Q Consensus       265 NK~Dl~~  271 (424)
                      ||+|...
T Consensus       151 N~~~~~~  157 (179)
T cd03110         151 NKYDLND  157 (179)
T ss_pred             eCCCCCc
Confidence            9999754

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.12  E-value=0.0029  Score=50.55  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=40.6

Q ss_pred             EEEEe-cCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          142 VGIIG-APNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       142 v~vvG-~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      |++.| ..|+||||+.-.|...-..     .+..   ....-......+.++|+|+....              .....+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~---vl~~d~d~~~d~viiD~p~~~~~--------------~~~~~l   59 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKR---VLLIDLDPQYDYIIIDTPPSLGL--------------LTRNAL   59 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCc---EEEEeCCCCCCEEEEeCcCCCCH--------------HHHHHH
Confidence            56666 6799999988876532110     0100   00000011267899999996532              011334


Q ss_pred             ccccEEEEEEeCC
Q 014461          221 NLFEVLMVVFDVH  233 (424)
Q Consensus       221 ~~aD~vl~VvD~~  233 (424)
                      ..+|.++++++.+
T Consensus        60 ~~ad~viv~~~~~   72 (104)
T cd02042          60 AAADLVLIPVQPS   72 (104)
T ss_pred             HHCCEEEEeccCC
Confidence            5689999999885

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.10  E-value=0.0023  Score=62.18  Aligned_cols=79  Identities=20%  Similarity=0.197  Sum_probs=58.5

Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      .......+..+|+||.|+|+.++++.....+.+++.....    +...|+|+||+|++.. +.+.+++..++..++.. +
T Consensus       137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~g----nKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ptv-~  210 (435)
T KOG2484|consen  137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHG----NKKLILVLNKIDLVPR-EVVEKWLVYLRREGPTV-A  210 (435)
T ss_pred             HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccC----CceEEEEeehhccCCH-HHHHHHHHHHHhhCCcc-e
Confidence            3444456677899999999999888777777777754432    3668999999999975 78888888888765543 4


Q ss_pred             EEEec
Q 014461          293 FMTSG  297 (424)
Q Consensus       293 ~~iSA  297 (424)
                      |..|.
T Consensus       211 fkast  215 (435)
T KOG2484|consen  211 FKAST  215 (435)
T ss_pred             eeccc
Confidence            44443

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.07  E-value=0.0013  Score=46.09  Aligned_cols=47  Identities=15%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD  268 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~D  268 (424)
                      .-.++|+|++|.+.....+-..-..+.+++.... .+.|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            3468999999998766555443333444433221 2589999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.07  E-value=0.0016  Score=59.18  Aligned_cols=46  Identities=24%  Similarity=0.369  Sum_probs=31.3

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      ...+|.++.|+|.+...-.....+.++-.+++     -.++.+|+||+|-.
T Consensus       153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg-----~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELG-----IKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC-----CceEEEEEeeccch
Confidence            46789999999997433233334545555544     25799999999965

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=97.05  E-value=0.0015  Score=61.05  Aligned_cols=143  Identities=17%  Similarity=0.271  Sum_probs=74.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC----cceeecCCCCc----------------------------eeeEEEEE---
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT----KVAAVSRKTNT----------------------------TTHEVLGV---  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~----~~~~~~~~~~t----------------------------t~~~~~~~---  181 (424)
                      .+.+.-.+.|.-|+|||||+|.++.+    +++.+-+..|-                            --.+....   
T Consensus        55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvr  134 (391)
T KOG2743|consen   55 ARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVR  134 (391)
T ss_pred             CccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHH
Confidence            34455678999999999999998742    23222221111                            00000000   


Q ss_pred             ------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-----CchHHHHHHHHHh
Q 014461          182 ------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-----SPDSRVIRLIERM  250 (424)
Q Consensus       182 ------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-----~~~~~~~~~l~~~  250 (424)
                            -..+....+++.|-|+-.|.+-.   . .......+..--.-|+|+-|+|+.....     .++..+.+...++
T Consensus       135 aie~lvqkkGkfD~IllETTGlAnPaPia---~-~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi  210 (391)
T KOG2743|consen  135 AIENLVQKKGKFDHILLETTGLANPAPIA---S-MFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI  210 (391)
T ss_pred             HHHHHHhcCCCcceEEEeccCCCCcHHHH---H-HHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH
Confidence                  11233457899999998763210   0 0111122222233599999999953211     1112233333333


Q ss_pred             ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461          251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       251 ~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (424)
                      ..      .--+++||.|+... +.+....+.+...+...
T Consensus       211 A~------AD~II~NKtDli~~-e~~~~l~q~I~~INslA  243 (391)
T KOG2743|consen  211 AL------ADRIIMNKTDLVSE-EEVKKLRQRIRSINSLA  243 (391)
T ss_pred             hh------hheeeeccccccCH-HHHHHHHHHHHHhhhHH
Confidence            21      13567999999986 55555666655544433

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.04  E-value=0.0078  Score=52.89  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=57.4

Q ss_pred             EEecCCCChhHHHHhHh------CCcceeecCCCC-ceeeEEEE--------EEecCCccEEEEeCCCcccCCCCCChhh
Q 014461          144 IIGAPNAGKSSIINYMV------GTKVAAVSRKTN-TTTHEVLG--------VMTKADTQICIFDTPGLMLNKSGYSHKD  208 (424)
Q Consensus       144 vvG~~~~GKStLin~l~------~~~~~~~~~~~~-tt~~~~~~--------~~~~~~~~i~l~DtpG~~~~~~~~~~~~  208 (424)
                      .-+..|+||||+.-.|.      |.++..+.-.++ .......+        ....-...++++||||....       .
T Consensus         5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------~   77 (179)
T cd02036           5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------G   77 (179)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH-------H
Confidence            34578999999988765      334333332221 11111000        00001117899999985421       0


Q ss_pred             hhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          209 VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       209 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                          .   ...+..+|.++++++.+...-.....+.+.++...     .....+|+|++|...
T Consensus        78 ----~---~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~-----~~~~~iv~N~~~~~~  128 (179)
T cd02036          78 ----F---ITAIAPADEALLVTTPEISSLRDADRVKGLLEALG-----IKVVGVIVNRVRPDM  128 (179)
T ss_pred             ----H---HHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcC-----CceEEEEEeCCcccc
Confidence                1   12345689999999885321111123344444321     134678999998654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.0029  Score=61.31  Aligned_cols=97  Identities=18%  Similarity=0.207  Sum_probs=55.3

Q ss_pred             hhhcccceEEEEEecCCCChhHHHHhHhC------CcceeecCCC-------------CceeeEEEEE------------
Q 014461          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT-------------NTTTHEVLGV------------  181 (424)
Q Consensus       133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~-------------~tt~~~~~~~------------  181 (424)
                      .+...++-.|+++|-.|+||||.+..|..      .+.+.+....             ..++-+..+.            
T Consensus        95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~e  174 (483)
T KOG0780|consen   95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASE  174 (483)
T ss_pred             ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHH
Confidence            34556677899999999999999887752      1211111000             0011111111            


Q ss_pred             ----EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC
Q 014461          182 ----MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH  235 (424)
Q Consensus       182 ----~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~  235 (424)
                          +..+++.++++||.|-+...    ...+.+ +..... .-..|.+|+|+|++-+
T Consensus       175 gv~~fKke~fdvIIvDTSGRh~qe----~sLfeE-M~~v~~-ai~Pd~vi~VmDasiG  226 (483)
T KOG0780|consen  175 GVDRFKKENFDVIIVDTSGRHKQE----ASLFEE-MKQVSK-AIKPDEIIFVMDASIG  226 (483)
T ss_pred             HHHHHHhcCCcEEEEeCCCchhhh----HHHHHH-HHHHHh-hcCCCeEEEEEecccc
Confidence                22356789999999976431    111222 222222 2347999999999754

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.0051  Score=55.95  Aligned_cols=118  Identities=18%  Similarity=0.231  Sum_probs=64.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcce----eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVA----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVE  214 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~----~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~  214 (424)
                      .+|.++|.--+||||+-.-....-.+    -.......|++.    +...-..+.+||.||+..+.. .+.+.       
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~D~e-------   96 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSFDYE-------   96 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCccCHH-------
Confidence            56999999999999987654421110    011111111111    111223578999999986532 12111       


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                         ...+.+-++++|+|+.+...+....+...+.+.. .-.+++.+=+.+.|+|-..+
T Consensus        97 ---~iF~~~gALifvIDaQddy~eala~L~~~v~ray-kvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen   97 ---MIFRGVGALIFVIDAQDDYMEALARLHMTVERAY-KVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             ---HHHhccCeEEEEEechHHHHHHHHHHHHHhhhee-ecCCCceEEEEEEeccCCch
Confidence               1235568999999995432222222222222222 12345667788999998764

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.87  E-value=0.007  Score=58.80  Aligned_cols=95  Identities=21%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      ...+..+..+|+++.|+|+.+++......+...|++..    +.+.+|+|+|||||+.. -....++..+...++-. .|
T Consensus       205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~----phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTi-Af  278 (572)
T KOG2423|consen  205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEK----PHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTI-AF  278 (572)
T ss_pred             HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcC----CcceeEEEeeccccccH-HHHHHHHHHHhhhCcce-ee
Confidence            34455678889999999999888777777777777643    44669999999999874 34556666666665543 45


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ..|-.+..|-..|++.|.+..
T Consensus       279 HAsi~nsfGKgalI~llRQf~  299 (572)
T KOG2423|consen  279 HASINNSFGKGALIQLLRQFA  299 (572)
T ss_pred             ehhhcCccchhHHHHHHHHHH
Confidence            566666677666776665543

>PRK13695 putative NTPase; Provisional

Probab=96.83  E-value=0.049  Score=47.93  Aligned_cols=81  Identities=11%  Similarity=0.256  Sum_probs=43.0

Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|+  +++|--......+..+.+.+.....   .+.|++++.||....       ...+.+....+. .++.+  
T Consensus        92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~-------~~~~~i~~~~~~-~i~~~--  156 (174)
T PRK13695         92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVH-------PFVQEIKSRPGG-RVYEL--  156 (174)
T ss_pred             hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhH-------HHHHHHhccCCc-EEEEE--
Confidence            34556777  5778321112222334444444432   247899999985321       223344444443 36665  


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                       +.+|=+++...|.+.+
T Consensus       157 -~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        157 -TPENRDSLPFEILNRL  172 (174)
T ss_pred             -cchhhhhHHHHHHHHH
Confidence             5566678887777654

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.82  E-value=0.0066  Score=48.88  Aligned_cols=94  Identities=12%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             EecCCCChhHHHHhHhCC-------cceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          145 IGAPNAGKSSIINYMVGT-------KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       145 vG~~~~GKStLin~l~~~-------~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      -+..|+||||+.-.|...       .+..+.-.++            .+..++++|||+....              ...
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------------~~~D~IIiDtpp~~~~--------------~~~   59 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------------FGDDYVVVDLGRSLDE--------------VSL   59 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------------CCCCEEEEeCCCCcCH--------------HHH
Confidence            356889999987776532       1111111111            1227899999986531              111


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+..+|.++++++.+.........+.+++++.+..  +...+.+|+|+
T Consensus        60 ~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~--~~~~~~lVvNr  106 (106)
T cd03111          60 AALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYS--LPAKIELVLNR  106 (106)
T ss_pred             HHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCC--CcCceEEEecC
Confidence            234567999999988532222223455555554422  12357788885

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.81  E-value=0.006  Score=59.40  Aligned_cols=85  Identities=21%  Similarity=0.298  Sum_probs=62.2

Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      .+...+.+..+|+|+.|+|+.++.+.....+.+++..        .|.++|+||+|+.+. ....++.+.+....+.. .
T Consensus        25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--------k~~i~vlNK~DL~~~-~~~~~W~~~~~~~~~~~-~   94 (322)
T COG1161          25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--------KPKLLVLNKADLAPK-EVTKKWKKYFKKEEGIK-P   94 (322)
T ss_pred             HHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--------CCcEEEEehhhcCCH-HHHHHHHHHHHhcCCCc-c
Confidence            3444556788899999999987776665555555543        456999999999985 45677777777766554 6


Q ss_pred             EEEecCCCcChHHHH
Q 014461          293 FMTSGLKGAGLKALT  307 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~  307 (424)
                      +.+|++++.+...+.
T Consensus        95 ~~v~~~~~~~~~~i~  109 (322)
T COG1161          95 IFVSAKSRQGGKKIR  109 (322)
T ss_pred             EEEEeecccCccchH
Confidence            778888888777666

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.67  E-value=0.011  Score=45.83  Aligned_cols=69  Identities=12%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (424)
                      +++.|.+|+||||+...+...-..     .+..    ...+  +  .+.++|+||.......         .  ......
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~----v~~~--~--d~iivD~~~~~~~~~~---------~--~~~~~~   57 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKR----VLLI--D--DYVLIDTPPGLGLLVL---------L--CLLALL   57 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCe----EEEE--C--CEEEEeCCCCccchhh---------h--hhhhhh
Confidence            678899999999999988642211     0110    0111  1  7899999997643110         0  122345


Q ss_pred             cccEEEEEEeCCC
Q 014461          222 LFEVLMVVFDVHR  234 (424)
Q Consensus       222 ~aD~vl~VvD~~~  234 (424)
                      .+|.++++++...
T Consensus        58 ~~~~vi~v~~~~~   70 (99)
T cd01983          58 AADLVIIVTTPEA   70 (99)
T ss_pred             hCCEEEEecCCch
Confidence            6799999998853

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.67  E-value=0.0072  Score=60.66  Aligned_cols=82  Identities=17%  Similarity=0.276  Sum_probs=61.9

Q ss_pred             hHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461          211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       211 ~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (424)
                      +..+..|..+..+|+||.++|+.+++-.....+.+++.+...    .+..++++||.||... .....+.+.|...+ . 
T Consensus       163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~----~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~n-i-  235 (562)
T KOG1424|consen  163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP----SKANVLLVNKADLLPP-EQRVAWAEYFRQNN-I-  235 (562)
T ss_pred             HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcccc----ccceEEEEehhhcCCH-HHHHHHHHHHHhcC-c-
Confidence            568889999999999999999988766666667777776542    2557899999999986 44455666666543 3 


Q ss_pred             eEEEEecCC
Q 014461          291 RIFMTSGLK  299 (424)
Q Consensus       291 ~~~~iSA~~  299 (424)
                      .++..||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            488889875

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.60  E-value=0.013  Score=55.56  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCc
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGA  301 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~  301 (424)
                      +.|-+++|+.+..+ ......+..+|-.....   ++.-++++||+|+........+....+-...++. ++.+|++++.
T Consensus        79 n~d~~iiIvs~~~P-~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~-v~~~s~~~~~  153 (301)
T COG1162          79 NNDQAIIVVSLVDP-DFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP-VLFVSAKNGD  153 (301)
T ss_pred             ccceEEEEEeccCC-CCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCee-EEEecCcCcc
Confidence            35666677766543 22223333333332222   3445778999999976332212233333345665 8999999999


Q ss_pred             ChHHHHHHHHHhc
Q 014461          302 GLKALTQYLMEQA  314 (424)
Q Consensus       302 gi~~L~~~i~~~l  314 (424)
                      |+++|.+++....
T Consensus       154 ~~~~l~~~l~~~~  166 (301)
T COG1162         154 GLEELAELLAGKI  166 (301)
T ss_pred             cHHHHHHHhcCCe
Confidence            9999999987664

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.53  E-value=0.0076  Score=60.81  Aligned_cols=157  Identities=14%  Similarity=0.166  Sum_probs=85.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ..++++|+|..++|||+|+.+++...+.. ...+...+.....+......-+.+.|-.|.. .        .        
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~-~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-~--------a--------   90 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQ-DESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-D--------A--------   90 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceecc-ccCCcCccceeeEEeeccceEeeeecccCCc-h--------h--------
Confidence            35789999999999999999977655432 2222223333333333444445566666621 1        0        


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCC--hhhHHHHHHHHhcCCCCCeEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .....+|++||||...+....  ..+..+-.++.. ......|+++|+++-=....  +.........+........+|+
T Consensus        91 Qft~wvdavIfvf~~~d~~s~--q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e  168 (749)
T KOG0705|consen   91 QFCQWVDAVVFVFSVEDEQSF--QAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE  168 (749)
T ss_pred             hhhhhccceEEEEEeccccCH--HHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence            123446889999988543222  222222222221 11334677777776422111  1222222222222222234899


Q ss_pred             EecCCCcChHHHHHHHHHhc
Q 014461          295 TSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+|.+|.++...|+.+....
T Consensus       169 t~atyGlnv~rvf~~~~~k~  188 (749)
T KOG0705|consen  169 TCATYGLNVERVFQEVAQKI  188 (749)
T ss_pred             cchhhhhhHHHHHHHHHHHH
Confidence            99999999999888776543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.39  E-value=0.0024  Score=58.72  Aligned_cols=27  Identities=30%  Similarity=0.599  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.|+++|++|||||||+|.+.|-.
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456679999999999999999999854

>PHA02518 ParA-like protein; Provisional

Probab=96.35  E-value=0.029  Score=50.79  Aligned_cols=71  Identities=6%  Similarity=0.028  Sum_probs=39.2

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLC  263 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV  263 (424)
                      ..+.++++||||....           ..   ...+..+|.+|++++.+...-.....+.+++....... ...| ..++
T Consensus        75 ~~~d~viiD~p~~~~~-----------~~---~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv  139 (211)
T PHA02518         75 SGYDYVVVDGAPQDSE-----------LA---RAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFI  139 (211)
T ss_pred             ccCCEEEEeCCCCccH-----------HH---HHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEE
Confidence            3467999999986421           12   23355689999999885321111223444555433221 1233 4567


Q ss_pred             EecCCCC
Q 014461          264 MNKVDLV  270 (424)
Q Consensus       264 ~NK~Dl~  270 (424)
                      .|+.+..
T Consensus       140 ~n~~~~~  146 (211)
T PHA02518        140 ISRAIKN  146 (211)
T ss_pred             EeccCCc
Confidence            7877643

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.34  E-value=0.0026  Score=52.88  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..-+.+.|++|+|||++++.+....
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            3457899999999999999998643

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.31  E-value=0.0023  Score=57.18  Aligned_cols=53  Identities=17%  Similarity=0.123  Sum_probs=33.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEE
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF  192 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~  192 (424)
                      ++.-|+++|++|||||||+++|+..........+.||+..-.+.  .+|....|+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE--~~G~dY~fv   55 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGD--EEGKTYFFL   55 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCC--CCCceeEeC
Confidence            45668999999999999999998653222233456666543321  234444554

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.29  E-value=0.046  Score=47.95  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=31.3

Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecC-CCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV-DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      .+|  ++|+|=-.++......+.+.+..+-.   .+.|++.++-+. +..        .++.+....+.. ++.++..+
T Consensus        95 ~~~--liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~--------~l~~i~~~~~~~-i~~vt~~N  159 (168)
T PF03266_consen   95 SSD--LIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNP--------FLEEIKRRPDVK-IFEVTEEN  159 (168)
T ss_dssp             CCH--EEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SC--------CHHHHHTTTTSE-EEE--TTT
T ss_pred             CCC--EEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcH--------HHHHHHhCCCcE-EEEeChhH
Confidence            445  67888655555554555555655543   247888888877 321        244555554443 77775543

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.11  Score=52.05  Aligned_cols=81  Identities=15%  Similarity=0.233  Sum_probs=44.5

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .+..++++||.|-......     +...+. -+..+...|.|++|-.+--+ ++....+..+=+.+.....+..---+++
T Consensus       465 ~gfDVvLiDTAGR~~~~~~-----lm~~l~-k~~~~~~pd~i~~vgealvg-~dsv~q~~~fn~al~~~~~~r~id~~~l  537 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRMHNNAP-----LMTSLA-KLIKVNKPDLILFVGEALVG-NDSVDQLKKFNRALADHSTPRLIDGILL  537 (587)
T ss_pred             cCCCEEEEeccccccCChh-----HHHHHH-HHHhcCCCceEEEehhhhhC-cHHHHHHHHHHHHHhcCCCccccceEEE
Confidence            4678999999998754321     111111 12345678999999876432 2222233333333332222222235789


Q ss_pred             ecCCCCCC
Q 014461          265 NKVDLVTK  272 (424)
Q Consensus       265 NK~Dl~~~  272 (424)
                      +|+|-+++
T Consensus       538 tk~dtv~d  545 (587)
T KOG0781|consen  538 TKFDTVDD  545 (587)
T ss_pred             Eeccchhh
Confidence            99998874

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.21  E-value=0.004  Score=51.06  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|+|.|+|||||||+.+.|..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999975

...

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.20  E-value=0.019  Score=47.42  Aligned_cols=20  Identities=20%  Similarity=0.494  Sum_probs=18.2

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      |++.|+||+|||++++.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            67999999999999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.20  E-value=0.004  Score=44.68  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.4

Q ss_pred             EEEEEecCCCChhHHHHhHh
Q 014461          141 AVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~  160 (424)
                      ..+|.|++|+|||||+.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999875

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=96.19  E-value=0.12  Score=49.58  Aligned_cols=20  Identities=20%  Similarity=0.300  Sum_probs=17.1

Q ss_pred             EEEEEecCCCChhHHHHhHh
Q 014461          141 AVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~  160 (424)
                      ++++.|..||||||+.-.|.
T Consensus         2 ~ia~~gKGGVGKTTta~nLA   21 (290)
T CHL00072          2 KLAVYGKGGIGKSTTSCNIS   21 (290)
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            58999999999999877654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.18  E-value=0.0044  Score=52.08  Aligned_cols=28  Identities=25%  Similarity=0.466  Sum_probs=23.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~  164 (424)
                      .++-.++|+|++|+|||||++.|.|...
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             cCCCEEEEEccCCCccccceeeeccccc
Confidence            3456799999999999999999998643

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.14  E-value=0.0041  Score=54.42  Aligned_cols=27  Identities=33%  Similarity=0.605  Sum_probs=23.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.|+|+|++|+|||||+|-+.|-.
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhcc
Confidence            345679999999999999999998744

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.13  E-value=0.0049  Score=54.49  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCc
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..++++|++|+|||||++.|.+..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            358999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.11  E-value=0.049  Score=51.86  Aligned_cols=118  Identities=15%  Similarity=0.211  Sum_probs=65.9

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC---------C-
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS---------G-  203 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~---------~-  203 (424)
                      +...+..+++++|++|.|||++++++....-.. .+ ..           ....++..+.+|.--....         + 
T Consensus        56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~~-----------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-ED-----------AERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             CcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-CC-----------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            556677889999999999999999998644321 11 11           1123667777775422110         0 


Q ss_pred             -C-ChhhhhhHHHHHHhhcccccEEEEEEeCCCCC----CCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          204 -Y-SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL----TSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       204 -~-~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~----~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                       + +..............++...+=++++|--+..    ......++..++.++..  -.+|+|.|+++
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne--L~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE--LQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc--cCCCeEEeccH
Confidence             0 00111122223334455667777888853321    22234566777766532  24788888754

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.05  E-value=0.0049  Score=56.36  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=23.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.|+|+|++|+|||||+|.+-+-.
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            456679999999999999999987643

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.00  E-value=0.0028  Score=55.67  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=33.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEe
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFD  193 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~D  193 (424)
                      ++.-+++.|++|||||||+++|+... ...-....|||..-.+.  .+|....|++
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gE--v~G~dY~Fvs   55 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGE--VDGVDYFFVT   55 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCC--cCCceeEeCC
Confidence            35668999999999999999998765 22222334555443322  2344455543

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.99  E-value=0.0063  Score=55.32  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=22.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++..++|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35677889999999999999999754

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=95.93  E-value=0.058  Score=49.10  Aligned_cols=48  Identities=10%  Similarity=-0.008  Sum_probs=27.1

Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      .+|.++++++.+...-.....+.+.++++.... .-....+|.||++..
T Consensus       141 ~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~-~~~~~gvv~N~~~~~  188 (212)
T cd02117         141 KADEIYIVTSGEFMALYAANNICKGIRKYAKSG-GVRLGGLICNSRNTD  188 (212)
T ss_pred             cCcEEEEEecccHHHHHHHHHHHHHHHHhCccc-CCcEEEEEEeCCCCc
Confidence            578888888774211111234556666654321 112245899999854

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.92  E-value=0.0067  Score=54.88  Aligned_cols=25  Identities=20%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ++..++++|++|+|||||++.|.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4567999999999999999999874

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=95.91  E-value=0.046  Score=51.70  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=16.7

Q ss_pred             EEEEEecCCCChhHHHHhHh
Q 014461          141 AVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~  160 (424)
                      .|+|.|..||||||+.-.|.
T Consensus         2 ~i~v~gKGGvGKTT~a~nLA   21 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLS   21 (267)
T ss_pred             EEEEecCCCCCHHHHHHHHH
Confidence            58888999999999777654

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.86  E-value=0.0076  Score=50.99  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEEecCCCChhHHHHhHhCC
Q 014461          142 VGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~  162 (424)
                      ++++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=95.81  E-value=0.013  Score=54.14  Aligned_cols=28  Identities=39%  Similarity=0.707  Sum_probs=24.0

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...+...+++.|++|+|||||++.|.+.
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788999999999999999998863

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.75  E-value=0.01  Score=52.92  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+..++++|++|+|||||+++|++.
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34678999999999999999999863

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK07261 topology modulation protein; Provisional

Probab=95.74  E-value=0.0074  Score=53.15  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      +|+|+|++|+|||||...|..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=95.72  E-value=0.027  Score=52.17  Aligned_cols=70  Identities=9%  Similarity=-0.030  Sum_probs=39.1

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      +++.++++||||....           ..   ...+..+|.+|+.+..+...-.....+...+.+......++.|..+++
T Consensus        82 ~~yD~iiID~pp~~~~-----------~~---~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~  147 (231)
T PRK13849         82 QGFDYALADTHGGSSE-----------LN---NTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILR  147 (231)
T ss_pred             CCCCEEEEeCCCCccH-----------HH---HHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence            3578999999996521           11   223456799988877642111111123333333222223346778999


Q ss_pred             ecCC
Q 014461          265 NKVD  268 (424)
Q Consensus       265 NK~D  268 (424)
                      |.++
T Consensus       148 ~~~~  151 (231)
T PRK13849        148 QRVP  151 (231)
T ss_pred             Eecc
Confidence            9987

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=95.72  E-value=0.041  Score=54.14  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=22.6

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .....+++++|+.++|||||...|.+
T Consensus        70 ~~~~~~vmvvG~vDSGKSTLt~~LaN   95 (398)
T COG1341          70 AGKVGVVMVVGPVDSGKSTLTTYLAN   95 (398)
T ss_pred             ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence            45678999999999999999888775

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.71  E-value=0.034  Score=46.28  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...+.+.|++|+|||+|++.+...
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.69  E-value=0.0077  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999754

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=95.67  E-value=0.085  Score=49.78  Aligned_cols=64  Identities=23%  Similarity=0.265  Sum_probs=40.6

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCC-CceeeEEEEE-E--ecCCccEEEEeCCCccc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKT-NTTTHEVLGV-M--TKADTQICIFDTPGLML  199 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~-~tt~~~~~~~-~--~~~~~~i~l~DtpG~~~  199 (424)
                      ..+..-|+|+|+..+|||.|+|.|++.. ...++... .+|....... .  ...+..+.++||.|+..
T Consensus        18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            3455678999999999999999999743 12233322 2333222111 1  12345699999999976

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.66  E-value=0.0085  Score=53.08  Aligned_cols=27  Identities=22%  Similarity=0.589  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            356689999999999999999999853

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00235 udk uridine kinase

Probab=95.62  E-value=0.0085  Score=54.46  Aligned_cols=26  Identities=23%  Similarity=0.486  Sum_probs=22.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      +++..|+|+|++|+|||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999863

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.62  E-value=0.0092  Score=52.80  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..++-.++++|++|+|||||++.+++
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            34567899999999999999999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.61  E-value=0.0095  Score=55.63  Aligned_cols=25  Identities=32%  Similarity=0.674  Sum_probs=22.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +++-.++++|++|||||||+++|.+
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4566789999999999999999987

>PRK08118 topology modulation protein; Reviewed

Probab=95.58  E-value=0.0091  Score=52.36  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+|.|+|++|+|||||...|..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999874

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=95.57  E-value=0.051  Score=49.75  Aligned_cols=103  Identities=9%  Similarity=0.148  Sum_probs=56.8

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEE
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      +.+++|+||.|.....           ..   ..+..+|+||+=.-.+.  .+.+  ....+++.+......+.+|.-++
T Consensus        83 ~~d~VlvDleG~as~~-----------~~---~aia~sDlVlIP~~~s~--lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl  146 (231)
T PF07015_consen   83 GFDFVLVDLEGGASEL-----------ND---YAIARSDLVLIPMQPSQ--LDADEAAKTFKWVRRLEKAERRDIPAAVL  146 (231)
T ss_pred             CCCEEEEeCCCCCchh-----------HH---HHHHHCCEEEECCCCCh--HHHHHHHHHHHHHHHHHHhhCCCCCeeEE
Confidence            4578999999975321           11   12345798876543321  1111  24556666665544556899999


Q ss_pred             EecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHH
Q 014461          264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ  308 (424)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~  308 (424)
                      +|++.-.... .......++.+  .+ ++|.++-.....+.+++.
T Consensus       147 ~Tr~~~~~~~-~~~~~~~e~~~--~l-pvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  147 FTRVPAARLT-RAQRIISEQLE--SL-PVLDTELHERDAFRAMFS  187 (231)
T ss_pred             EecCCcchhh-HHHHHHHHHHh--cC-CccccccccHHHHHHHHH
Confidence            9999844321 22223333322  23 366666665555555554

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.57  E-value=0.011  Score=53.35  Aligned_cols=27  Identities=33%  Similarity=0.573  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||+.++-+-.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            456679999999999999999997654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.56  E-value=0.0099  Score=50.19  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      |+++|+||+||||++..|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999873

...

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.55  E-value=0.011  Score=43.60  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHhHhCC
Q 014461          142 VGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~  162 (424)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998753

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.52  E-value=0.011  Score=53.79  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            356678999999999999999999853

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=95.52  E-value=0.072  Score=46.56  Aligned_cols=111  Identities=13%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             EEEecCCCChhHHHHhHh------CCcceeecCCCCce-eeE-EEE---------E---EecCCccEEEEeCCCcccCCC
Q 014461          143 GIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-THE-VLG---------V---MTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       143 ~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt-~~~-~~~---------~---~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      ..-+.+|+||||+.-.|.      |.++..+.-.++.+ ... ...         .   ....++.++++|||+....  
T Consensus         4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~--   81 (169)
T cd02037           4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGD--   81 (169)
T ss_pred             EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcH--
Confidence            344678999999877664      33433332222211 100 000         0   1124678999999986421  


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                           .   .. .. ..+..+|.+++|...+...........+.+.+.+.     ...-+|+|+++-.
T Consensus        82 -----~---~~-~~-~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~-----~~~gvv~N~~~~~  134 (169)
T cd02037          82 -----E---HL-TL-AQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI-----PILGVVENMSYFV  134 (169)
T ss_pred             -----H---HH-HH-HhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC-----CeEEEEEcCCccc
Confidence                 0   01 11 11246799999997753111111233444444321     2245789999853

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.52  E-value=0.011  Score=54.12  Aligned_cols=27  Identities=33%  Similarity=0.598  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            456679999999999999999999853

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.51  E-value=0.011  Score=54.85  Aligned_cols=27  Identities=30%  Similarity=0.612  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456679999999999999999999853

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.50  E-value=0.0099  Score=54.07  Aligned_cols=24  Identities=21%  Similarity=0.517  Sum_probs=21.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+ .++++|++|+|||||++.+.|.
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCC
Confidence            45 8999999999999999999985

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.50  E-value=0.011  Score=54.03  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456679999999999999999999853

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=95.45  E-value=0.046  Score=49.52  Aligned_cols=27  Identities=22%  Similarity=0.493  Sum_probs=22.8

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHh
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ....+..+.+++|...+||||++..+.
T Consensus        34 k~arrelkllllgtgesgkstfikqmr   60 (359)
T KOG0085|consen   34 KDARRELKLLLLGTGESGKSTFIKQMR   60 (359)
T ss_pred             HhhhhhheeeeecCCCcchhhHHHHHH
Confidence            444567899999999999999999864

>PRK08233 hypothetical protein; Provisional

Probab=95.44  E-value=0.012  Score=51.91  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      +...|+|.|.+|+|||||.+.|...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            3567899999999999999999753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.43  E-value=0.012  Score=52.55  Aligned_cols=27  Identities=26%  Similarity=0.489  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|..
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455679999999999999999998853

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.40  E-value=0.012  Score=53.23  Aligned_cols=27  Identities=19%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356689999999999999999998853

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.40  E-value=0.0075  Score=63.95  Aligned_cols=28  Identities=25%  Similarity=0.434  Sum_probs=24.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~  164 (424)
                      ...+.|+++|..++||||.++.+.|..+
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~~f   54 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGFVF   54 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhcccc
Confidence            4567899999999999999999998544

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.39  E-value=0.0088  Score=52.03  Aligned_cols=22  Identities=27%  Similarity=0.611  Sum_probs=17.4

Q ss_pred             EEEEEecCCCChhHHHHhHhCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6999999999999999999754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.39  E-value=0.013  Score=53.50  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|..
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456679999999999999999999853

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.38  E-value=0.013  Score=49.89  Aligned_cols=27  Identities=26%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            455678999999999999999998854

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.38  E-value=0.015  Score=46.76  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ..-.++++|++|+|||||++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            34678999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.36  E-value=0.013  Score=53.68  Aligned_cols=26  Identities=23%  Similarity=0.516  Sum_probs=22.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35667899999999999999999985

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.36  E-value=0.013  Score=54.47  Aligned_cols=25  Identities=32%  Similarity=0.631  Sum_probs=22.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++-.++++|++|+|||||+..++|
T Consensus        28 ~~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          28 EKGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4456789999999999999999998

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.34  E-value=0.013  Score=53.45  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|..
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            346679999999999999999999853

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.32  E-value=0.014  Score=53.22  Aligned_cols=26  Identities=15%  Similarity=0.514  Sum_probs=23.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45667999999999999999999985

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.31  E-value=0.014  Score=53.42  Aligned_cols=27  Identities=22%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.31  E-value=0.013  Score=53.32  Aligned_cols=26  Identities=23%  Similarity=0.563  Sum_probs=22.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++..|+|.|.+|+|||||++.|.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35788999999999999999999763

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.30  E-value=0.014  Score=53.11  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356679999999999999999999853

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.30  E-value=0.014  Score=52.84  Aligned_cols=27  Identities=30%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            345679999999999999999999853

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	424
1x18_X	292	Contact Sites Of Era Gtpase On The Thermus Thermoph		1e-21
1ega_A	301	Crystal Structure Of A Widely Conserved Gtpase Era		2e-21
3r9w_A	307	Crystal Structure Of Era In Complex With Mggdpnp An		1e-19
3iev_A	308	Crystal Structure Of Era In Complex With Mggnp And		1e-19
1wf3_A	301	Crystal Structure Of Gtp-Binding Protein Tt1341 Fro		5e-18
4dcs_A	456	Crystal Structure Of B. Subtilis Enga In Complex Wi		4e-06
2hjg_A	436	The Crystal Structure Of The B. Subtilis Yphc Gtpas		4e-05
3a1t_A	258	Crystal Structue Of The Cytosolic Domain Of T. Mari		1e-04
3a1w_A	168	Crystal Structue Of The G Domain Of T. Maritima Feo		5e-04

>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 142/283 (50%), Gaps = 10/283 (3%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    DTPGL + +
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                K    R+ +  ++ ++ +V +V+F V     +PD  ++    R GK AP      
Sbjct: 68  -----KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGK-APVILAVN 121
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
              N              A Q   L     I   +GL    + A+ +  + +A    + E
Sbjct: 122 KVDNVQEKADLLPHLQFLASQMNFLD-IVPISAETGLNVDTIAAIVRKHLPEATHH-FPE 179
Query: 322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
           D +T  +   + ++ E++RE+L+  +  E+PYS+   +  +     G   I   ++  + 
Sbjct: 180 DYIT--DRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE 237
Query: 382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424
            Q+K+++G  G+KI  IG+EA ++++ +F+  VHL L V++K+
Sbjct: 238 GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKS 280

>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era Length = 301

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 142/283 (50%), Gaps = 10/283 (3%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    DTPGL + +
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                K    R+ +  ++ ++ +V +V+F V     +PD  ++    R GK AP      
Sbjct: 71  -----KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGK-APVILAVN 124
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
              N              A Q   L     I   +GL    + A+ +  + +A    + E
Sbjct: 125 KVDNVQEKADLLPHLQFLASQMNFLD-IVPISAETGLNVDTIAAIVRKHLPEATHH-FPE 182
Query: 322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
           D +T  +   + ++ E++RE+L+  +  E+PYS+   +  +     G   I   ++  + 
Sbjct: 183 DYIT--DRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE 240
Query: 382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424
            Q+K+++G  G+KI  IG+EA ++++ +F+  VHL L V++K+
Sbjct: 241 GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKS 283

>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 45/302 (14%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLN 200
           V I+G PN GKS+++N ++GTKV+ +S K  TT   VLGV     + QI   DTPG+   
Sbjct: 12  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 201 KSG--YSHKDVKVRVESAWSAVNLFEVLMVVFD-----------VHRHLTSPDSR-VIRL 246
           K      H  V++  +S   A    +V++ + D           ++++   P ++ VI +
Sbjct: 72  KKSDVLGHSMVEIAKQSLEEA----DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 247 IERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGL--- 303
           I ++ K  P   K VL +                E  K  P    I   S LKGA L   
Sbjct: 128 INKIDKIGP--AKNVLPL--------------IDEIHKKHPELTEIVPISALKGANLDEL 171
Query: 304 -KALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDW 362
            K + +YL E     P  ED   +++  ++ ++ E+VRE+ +    +E+P SI  ++ + 
Sbjct: 172 VKTILKYLPEGEPLFP--ED--MITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEI 227
Query: 363 K--DLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQV 420
           K  D     L I+  +I ++ + + I++GK G ++  IG  A +EL  I  R V+L L V
Sbjct: 228 KPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWV 287
Query: 421 RL 422
           ++
Sbjct: 288 KV 289

>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 45/302 (14%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLN 200
           V I+G PN GKS+++N ++GTKV+ +S K  TT   VLGV     + QI   DTPG+   
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 201 KSG--YSHKDVKVRVESAWSAVNLFEVLMVVFD-----------VHRHLTSPDSR-VIRL 246
           K      H  V++  +S   A    +V++ + D           ++++   P ++ VI +
Sbjct: 73  KKSDVLGHSMVEIAKQSLEEA----DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 247 IERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGL--- 303
           I ++ K  P   K VL +                E  K  P    I   S LKGA L   
Sbjct: 129 INKIDKIGP--AKNVLPL--------------IDEIHKKHPELTEIVPISALKGANLDEL 172
Query: 304 -KALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDW 362
            K + +YL E     P  ED   +++  ++ ++ E+VRE+ +    +E+P SI  ++ + 
Sbjct: 173 VKTILKYLPEGEPLFP--ED--MITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEI 228
Query: 363 K--DLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQV 420
           K  D     L I+  +I ++ + + I++GK G ++  IG  A +EL  I  R V+L L V
Sbjct: 229 KPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWV 288
Query: 421 RL 422
           ++
Sbjct: 289 KV 290

>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 22/287 (7%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS+++N ++G KVA +S +  TT   + G++T+   QI   DTPGL    
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL---- 65
Query: 202 SGYSHKDVKVRVE----SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
               HK +    E      + A+     ++ V D+    T  D  V R ++ +  + P  
Sbjct: 66  ----HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-- 119
Query: 258 QKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
              +L +               A   + LP  E   M S L    +  L   L+    + 
Sbjct: 120 ---ILLVGNKLDAAKYPEEAMKAYH-ELLPEAEP-RMLSALDERQVAELKADLLALMPEG 174
Query: 318 P--WSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQH 375
           P  + ED    S++       E++RE  +  +  E+PY++  ++ +  +  +G L I+  
Sbjct: 175 PFFYPED-YAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAI 233
Query: 376 LITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 422
           L   + SQ+ I++G+ G KI  IG    ++L ++  + V+L L+V++
Sbjct: 234 LYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKV 280

>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           +IG PN GKSS++N M+G +   VS    TT   V    T    +  I DT G+      
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 259
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           Y   + K  V  A  A++  EV+ VV D    +   D R+       GK
Sbjct: 260 YETTE-KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGK 307

>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           +IG PN GKSS++N  +G +   VS    TT   V    T    +  I DT G       
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKV 239
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           Y   + K  V  A  A++  EV+ VV D    +   D R+       GK
Sbjct: 240 YETTE-KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGK 287

>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form Ii Length = 258

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
           V V + G PN GK+S+ N + GTK   V+     T  +  GV T     I + D PG   
Sbjct: 6   VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY- 63
Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
              GYS  D K+  +         +++++V D      +P+  +  L+E +  +    +K
Sbjct: 64  -SLGYSSIDEKIARDYLLKGDA--DLVILVADS----VNPEQSLYLLLEILEME----KK 112
Query: 260 RVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
            +L M                E  KHL G   +F TS + G GL+ L + ++E A
Sbjct: 113 VILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVF-TSSVTGEGLEELKEKIVEYA 165

>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron Iransporter Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
           V V + G PN GK+S+ N + GTK   V+     T  +  GV T     I + D PG   
Sbjct: 6   VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY- 63
Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
              GYS  D K+  +         +++++V D      +P+  +  L+E +  +    +K
Sbjct: 64  -SLGYSSIDEKIARDYLLKGDA--DLVILVADS----VNPEQSLYLLLEILEME----KK 112
Query: 260 RVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
            +L M                E  KHL G   +F TS + G GL+ L + ++E A
Sbjct: 113 VILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVF-TSSVTGEGLEELKEKIVEYA 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	3e-60
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	2e-57
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	3e-52
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-33
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	1e-16
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	3e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	2e-15
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	4e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	9e-14
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	9e-14
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-13
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	8e-12
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	2e-11
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	7e-11
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	1e-10
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-10
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	8e-10
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	2e-09
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	2e-08
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	5e-08
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	7e-08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	7e-08
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	4e-07
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	7e-07
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	3e-06
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	1e-05
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-05
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	5e-05
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-04
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	4e-04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-04
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	4e-04
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	5e-04
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	6e-04
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	8e-04

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score =  197 bits (503), Expect = 3e-60
 Identities = 78/294 (26%), Positives = 144/294 (48%), Gaps = 16/294 (5%)

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
             +      + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    
Sbjct: 2   SIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV 61

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DTPGL +          ++  ++A S++   E+++ V +  R  T  D  V+  +     
Sbjct: 62  DTPGLHME---EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG-- 115

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
               K   +L +NKVD V +K DLL   +       +  I   S   G  +  +   + +
Sbjct: 116 ----KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 171

Query: 313 QAVQRPW--SEDPLT-MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGS 369
              +      ED +T  S+  M +   E++RE+L+  +  E+PYS+   +  +     G 
Sbjct: 172 HLPEATHHFPEDYITDRSQRFMAS---EIIREKLMRFLGAELPYSVTVEIERFVSNERGG 228

Query: 370 LRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
             I   ++  +  Q+K+++G  G+KI  IG+EA ++++ +F+  VHL L V++K
Sbjct: 229 YDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVK 282

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score =  189 bits (484), Expect = 2e-57
 Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 26/298 (8%)

Query: 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFD 193
            E   S  V I+G PN GKS+++N ++G KVA +S +  TT   + G++T+   QI   D
Sbjct: 2   AEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVD 61

Query: 194 TPGLMLNKSGYSHKDV----KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249
           TPGL        HK +    +   +  + A+     ++ V D+    T  D  V R +  
Sbjct: 62  TPGL--------HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARAL-- 111

Query: 250 MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQY 309
             K    K   +L  NK+D     ++ +   + +  L       M S L    +  L   
Sbjct: 112 --KPLVGKVPILLVGNKLDAAKYPEEAM---KAYHELLPEAEPRMLSALDERQVAELKAD 166

Query: 310 LMEQAVQRPW--SEDPLT--MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDL 365
           L+    + P+   ED      +         E++RE  +  +  E+PY++  ++ +  + 
Sbjct: 167 LLALMPEGPFFYPEDYAKSDQTFGEWVA---EILREEAMKRLWHEVPYAVATKVEEVAER 223

Query: 366 RDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
            +G L I+  L   + SQ+ I++G+ G KI  IG    ++L ++  + V+L L+V++ 
Sbjct: 224 ENGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVY 281

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score =  176 bits (449), Expect = 3e-52
 Identities = 84/302 (27%), Positives = 144/302 (47%), Gaps = 21/302 (6%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQI 189
                  K   V I+G PN GKS+++N ++GTKV+ +S K  TT   VLGV     + QI
Sbjct: 2   HHHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQI 61

Query: 190 CIFDTPGLMLNKSGYSHKDV--KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI 247
              DTPG+   K      DV     VE A  ++   +V++ + D        D  +    
Sbjct: 62  IFLDTPGIYEPK----KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEI---Y 114

Query: 248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF-KHLPGYERIFMTSGLKGAGLKAL 306
           +   K     +  ++ +NK+D +   K++L + ++  K  P    I   S LKGA L  L
Sbjct: 115 QNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDEL 172

Query: 307 TQYLMEQAVQRPW--SEDPLT-MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWK 363
            + +++   +      ED +T +   ++     E+VRE+ +    +E+P SI  ++ + K
Sbjct: 173 VKTILKYLPEGEPLFPEDMITDLPLRLLAA---EIVREKAMMLTREEVPTSIAVKINEIK 229

Query: 364 --DLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVR 421
             D     L I+  +I ++ + + I++GK G ++  IG  A +EL  I  R V+L L V+
Sbjct: 230 PGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVK 289

Query: 422 LK 423
           + 
Sbjct: 290 VV 291

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score =  129 bits (326), Expect = 2e-33
 Identities = 56/320 (17%), Positives = 119/320 (37%), Gaps = 30/320 (9%)

Query: 108 RKHRALAKALLQAALERQEEEEEEVKE-EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
             H   +  + + +   ++     ++  +      + + G  N GKSS +N +VG  V+ 
Sbjct: 2   HHHHHSSGLVPRGSHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSI 61

Query: 167 VSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV 225
           VS    TTT  V   M       + + DTPGL         +  ++RVE A       + 
Sbjct: 62  VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL-----DDVGELGRLRVEKARRVFYRADC 116

Query: 226 LMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH 285
            ++V D        +  V+ L + M          V+ +NK+D++ +K + L   +    
Sbjct: 117 GILVTDSAPTPY--EDDVVNLFKEMEI------PFVVVVNKIDVLGEKAEEL---KGLYE 165

Query: 286 LPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLD 345
                ++ + S L+  G   + + + E     P  E+   + + +      ++V   +  
Sbjct: 166 SRYEAKVLLVSALQKKGFDDIGKTISEIL---PGDEEIPYLGDLIDGG---DLVILVVPI 219

Query: 346 HVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEA--N 403
            +       I   +     +R+  L  E   +  K  + + ++   G K   +  ++   
Sbjct: 220 DLGAPKGRLI---MPQVHAIREA-LDREAIALVVKERELRYVMENIGMKPKLVITDSQVA 275

Query: 404 EELRSIFKRDVHLILQVRLK 423
            ++ S    DV L     ++
Sbjct: 276 MKVASDVPEDVELTTFSIVE 295

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 80.6 bits (200), Expect = 1e-16
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 30/205 (14%)

Query: 117 LLQAALER--QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
           +L+  +++  ++  + E K E   ++ V I+G PN GKS++ N ++  + A VS    TT
Sbjct: 156 MLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT 215

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES--------AWSAVNLFEVL 226
              V   +     +    DT GL         +  +V   +           ++   +V+
Sbjct: 216 RDPVDDEVFIDGRKYVFVDTAGL--------RRKSRVEPRTVEKYSNYRVVDSIEKADVV 267

Query: 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK-----VAE 281
           ++V D  + +T  D R+  L+ER G+ +      V+  NK DLV  ++           E
Sbjct: 268 VIVLDATQGITRQDQRMAGLMERRGRAS------VVVFNKWDLVVHREKRYDEFTKLFRE 321

Query: 282 QFKHLPGYERIFMTSGLKGAGLKAL 306
           +   +     IF TS  KG  +  +
Sbjct: 322 KLYFIDYSPLIF-TSADKGWNIDRM 345

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 30/200 (15%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------ADTQICIF 192
           V I+G PN GKS++ N +V  K A V         +  GV T+               + 
Sbjct: 4   VLIVGRPNVGKSTLFNKLVKKKKAIV--------EDEEGV-TRDPVQDTVEWYGKTFKLV 54

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DT G+  N      + +K    +     +L  VL VV D  R +T  D  +   + +   
Sbjct: 55  DTCGVFDNPQDIISQKMKEVTLNMIREADL--VLFVV-DGKRGITKEDESLADFLRKSTV 111

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
                   +L  NK +    ++   +V  +   L G+      S      L  + + +++
Sbjct: 112 ------DTILVANKAE--NLREFEREVKPELYSL-GFGEPIPVSAEHNINLDTMLETIIK 162

Query: 313 QAVQRPWSEDPLTMSEEVMK 332
           +  ++    +      + +K
Sbjct: 163 KLEEKGLDLESKPEITDAIK 182

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 76.7 bits (190), Expect = 2e-15
 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 29/208 (13%)

Query: 117 LLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176
           LL A  E  +   E    E+       +IG PN GKSS++N M+G +   VS    TT  
Sbjct: 155 LLDAVAEHFKNIPETKYNEEVIQFC--LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRD 212

Query: 177 EVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR-------VESAWSAVNLFEVLMVV 229
            V    T    +  I DT G+         K  KV        V  A  A++  EV+ VV
Sbjct: 213 AVDTSFTYNQQEFVIVDTAGMR--------KKGKVYETTEKYSVLRALKAIDRSEVVAVV 264

Query: 230 FDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK-----VAEQFK 284
            D    +   D R+       GK        V+ +NK D V K +  +K     + + F+
Sbjct: 265 LDGEEGIIEQDKRIAGYAHEAGKAV------VIVVNKWDAVDKDESTMKEFEENIRDHFQ 318

Query: 285 HLPGYERIFMTSGLKGAGLKALTQYLME 312
            L     +F  S L    +  L   +++
Sbjct: 319 FLDYAPILF-MSALTKKRIHTLMPAIIK 345

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 33/174 (18%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------ADTQICIF 192
           V I+G PN GKS+I N + G +++ V         +  GV T+          +    + 
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIV--------EDTPGV-TRDRIYSSAEWLNYDFNLI 56

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DT G+ +    +     ++R + A  A++  +V++ + +    +T+ D  V +++ R  K
Sbjct: 57  DTGGIDIGDEPF---LAQIR-QQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306
                   VL +NK+D      ++      F  L G+   +  SG  G GL  L
Sbjct: 113 ------PVVLAVNKLD----NTEMRANIYDFYSL-GFGEPYPISGTHGLGLGDL 155

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 71.7 bits (175), Expect = 9e-14
 Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 52/295 (17%)

Query: 73  EPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV 132
            P  DE     +    + ++   G+ +I  +E        +    +Q          + +
Sbjct: 7   SPKSDENNDLPSSFTGYFKKFNTGR-KIISQEILNLIELRMRAGNIQLTNSA---ISDAL 62

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV----AAVSRKTNTTTHEVLGVMTKADTQ 188
           KE D   + V + G   +GKSS IN + G       AA +     T  E           
Sbjct: 63  KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPN 121

Query: 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           +  +D PG+                ++    +  +E    +          D  + + I 
Sbjct: 122 VVFWDLPGIG---------STNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS 172

Query: 249 RMGKQAPPKQKRVLCMNKVDLV--TKKKDLLKVAEQFKHL---------------PGYER 291
            M K      +      KVD     +     +  ++ K L                    
Sbjct: 173 MMKK------EFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPP 226

Query: 292 IFMTSG--LKGAGLKALTQYLMEQ--AVQRPWSEDPLTMSEEVMKNISLEVVRER 342
           IF+ S   +       L   L+      +R        +S   + NI+  V+ ++
Sbjct: 227 IFLLSNKNVCHYDFPVLMDKLISDLPIYKR----HNFMVS---LPNITDSVIEKK 274

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 69.9 bits (171), Expect = 9e-14
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 108 RKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV 167
            +     +    A  E+  E   ++K++D  S+ V ++G    GKSS +N ++G +V  V
Sbjct: 5   VREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV 64

Query: 168 SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES--AWSAVNLFEV 225
           S         V+   T     I I DTPG  L ++GY +      ++       +++  +
Sbjct: 65  SPFQAEGLRPVMVSRTMGGFTINIIDTPG--LVEAGYVNHQALELIKGFLVNRTIDVL-L 121

Query: 226 LMVVFDVHRHLTSPDSRVIRLI-ERMGKQAPPKQKRVLCMNKVDLVTK 272
            +   DV+  +   D +V+  I +  GK+     K +L +        
Sbjct: 122 YVDRLDVYA-VDELDKQVVIAITQTFGKEI--WCKTLLVLTHAQFSPP 166

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 12/176 (6%)

Query: 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163
           +++  +  +       A   +  E    +K+ED  S+ + ++G    GKSS +N ++G +
Sbjct: 4   QQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63

Query: 164 VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF 223
           V ++S   +     V+   ++A   + I DTPG  L + GY +      ++S      + 
Sbjct: 64  VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPG--LIEGGYINDMALNIIKSFLLDKTID 121

Query: 224 EVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLK 278
            +L V       + + D  V + I    GK            NK  +         
Sbjct: 122 VLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI---------WNKAIVALTHAQFSP 168

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 44/231 (19%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS------VAVGIIGAPNAGKSS 154
           F EE+ E      ++  L   +E    E   + +  Q        V+  I G PNAGKS+
Sbjct: 193 FSEEDVE----FQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKST 248

Query: 155 IINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQICIFDTPGLMLNKSGYS 205
           ++N ++G + A V   ++   TT + +         M        + DT GL   ++   
Sbjct: 249 LLNTLLGQERAIV---SHMPGTTRDYIEECFIHDKTM------FRLTDTAGL--REA--- 294

Query: 206 HKDV--KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263
             +      +  +   +   ++++ + D+       +   IR +    K A P  K +  
Sbjct: 295 -GEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIREL----KAAHPAAKFLTV 349

Query: 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
            NK+D       L++             +   S L G G+  L Q++ +  
Sbjct: 350 ANKLDRAANADALIRAIADGTGTE----VIGISALNGDGIDTLKQHMGDLV 396

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 47/191 (24%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT---HEVL---GVMTKADTQICIFD 193
           + V I G PNAGKSS++N + G + A V+    TT     E +   G+       + I D
Sbjct: 5   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP------LHIID 58

Query: 194 TPGLMLNKSGYSHKDVKVR----------VESAWSAVNLFEVLMVVFDVHRHLTSPDSRV 243
           T GL              R          +E AW  +   + ++ + D         +  
Sbjct: 59  TAGL--------------REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE- 103

Query: 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303
             +      + P K    +  NK D+  +             + G+  I   S   G G+
Sbjct: 104 --IWPEFIARLPAKLPITVVRNKADITGET-------LGMSEVNGHALIR-LSARTGEGV 153

Query: 304 KALTQYLMEQA 314
             L  +L +  
Sbjct: 154 DVLRNHLKQSM 164

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 62.9 bits (154), Expect = 7e-11
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 66/239 (27%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS------VAVGIIGAPNAGKSS 154
           F+E+        L    + + +E    E  ++     K       + V I+G PN GKSS
Sbjct: 185 FEEDLPP-----LDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSS 239

Query: 155 IINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQICIFDTPGLMLNKSGYS 205
           ++N    +  A V   T+   TT +V+       G+       + + DT G+        
Sbjct: 240 LLNAWSQSDRAIV---TDLPGTTRDVVESQLVVGGIP------VQVLDTAGI-------- 282

Query: 206 HKDVKVR----------VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
                 R          VE +  A N  +++++  D     T+ D  +   +        
Sbjct: 283 ------RETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-------- 328

Query: 256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
             +  +L MNK+DLV K     ++    ++     +I  T+  +  G+ +L   ++E  
Sbjct: 329 KHRPLILVMNKIDLVEK-----QLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIV 382

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 43/189 (22%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQIC 190
           + + I+G PN GKS+++N ++    A V   T+   TT +V+       G++        
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV---TDIPGTTRDVISEEIVIRGIL------FR 294

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVES-----AWSAVNLFEVLMVVFDVHRHLTSPDSRVIR 245
           I DT G+          +    VE          +   ++++ V D    L   D +++ 
Sbjct: 295 IVDTAGV--------RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE 346

Query: 246 LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305
            I          ++ ++ +NKVD+V K    +   E    L     +   S LKG GL+ 
Sbjct: 347 RI--------KNKRYLVVINKVDVVEK----INEEEIKNKLGTDRHMVKISALKGEGLEK 394

Query: 306 LTQYLMEQA 314
           L + +  + 
Sbjct: 395 LEESIYRET 403

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 14/194 (7%)

Query: 122 LERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV 181
           L +  E  +++   D +   V I G PN GKS+++  +   K   ++    TT    +G 
Sbjct: 150 LNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQ 208

Query: 182 MTKADTQICIFDTPGLM---LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS 238
                 +  I DTPGL+   +++     K   + +        L  +++ +FD   H   
Sbjct: 209 FEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL------RYLGNLIIYIFDPSEHCGF 262

Query: 239 PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298
           P    I L E +  +       ++ +NK+D+    ++ +K  E+F    G   I + S L
Sbjct: 263 PLEEQIHLFEEVHGEFKDL-PFLVVINKIDVAD--EENIKRLEKFVKEKGLNPIKI-SAL 318

Query: 299 KGAGLKALTQYLME 312
           KG G+  + + +++
Sbjct: 319 KGTGIDLVKEEIIK 332

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 41/216 (18%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + + GAPN GKSS +N +    V  V   + TT +  +G       +  I DTPGL    
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL---- 86

Query: 202 SGYSHKDVKVRVESAWSAVNLFE------------VLMVVFDVHRHLTSPDSRVIRLIER 249
                      ++ A+   N  E            V++ + D+           I L   
Sbjct: 87  -----------LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYS 135

Query: 250 MGKQAPPKQKRVLCMNKVDLVT----KKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305
           +      K   V+  NK+D          + L + +   ++    +    S L G G++ 
Sbjct: 136 IKSVFSNK-SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194

Query: 306 LTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRE 341
                 E         + + + +E + N  L   + 
Sbjct: 195 AKITACELLKNDQ--AESILLDQEQLLNTKLGETKN 228

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 6e-10
 Identities = 65/439 (14%), Positives = 142/439 (32%), Gaps = 102/439 (23%)

Query: 42  TENDCDSVFDS------SYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQK 95
           ++ + D +  S      +     T+   Q     K  E      Y+     I   E+ Q 
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQP 105

Query: 96  GKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKE---EDQKSVAVGIIGAPNAGK 152
             +     E+ +R +    +   +  + R  +   ++++   E + +  V I G   +GK
Sbjct: 106 SMMTRMYIEQRDRLYND-NQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 153 SSIINYMVGTKVAAVSRKTNTTTH---EV----LGVMTKADTQICIFDTPGLMLNKSGYS 205
           + +           V            ++    L      +T + +       ++ +  S
Sbjct: 164 TWV--------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 206 HKD----VKVRVESAWSAVNLF-------EVLMVV-----------FDVH-RHL-TSPDS 241
             D    +K+R+ S  + +            L+V+           F++  + L T+   
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLL-KVAEQ-FKHLPGYERIFMTSG 297
           +V   +      +      +   +    +T    K LL K  +   + LP    +  T+ 
Sbjct: 276 QVTDFL------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNP 327

Query: 298 LKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNI--SLEV-----VRER------LL 344
            + + +       +   +   W        +++   I  SL V      R+         
Sbjct: 328 RRLSIIAE----SIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 345 DHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANE 404
              H  IP  +   +  W D+    ++ +  ++ NKL  +  LV K             E
Sbjct: 383 PSAH--IPTILLSLI--WFDV----IKSDVMVVVNKL-HKYSLVEKQP----------KE 423

Query: 405 ELRSIFKRDVHLILQVRLK 423
              SI    ++L L+V+L+
Sbjct: 424 STISIP--SIYLELKVKLE 440

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 57/440 (12%), Positives = 134/440 (30%), Gaps = 135/440 (30%)

Query: 19  KPRLNPLFIHRFYSAQPQQTDNETENDC----DSVFDSS---YFRIP-----TIDDPQNN 66
           +  L  L   + Y             +C     +V ++     F +      T    Q  
Sbjct: 231 QAELRRLLKSKPY------------ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 67  NAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQE 126
           +       T            +  +            +E +     L K L        +
Sbjct: 279 DFLSAATTT-----------HISLDHHSMT----LTPDEVKS---LLLKYL--------D 312

Query: 127 EEEEEVKEEDQKS--VAVGIIGAPNAGKSSIINY--MVGTKVAAVSRKTNTTTHEVLGVM 182
              +++  E   +    + II        +  +    V         K  T     L V+
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD------KLTTIIESSLNVL 366

Query: 183 TKADTQIC-----IFDTPGLMLNKSGYSHKDVKV---RVESAWSAVNLFEVLMVVFDVHR 234
             A+ +       +F                  +    +   W  V   +V++VV  +H+
Sbjct: 367 EPAEYRKMFDRLSVFP-------------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 235 HLTSPDSRVIRLIERMGK-------------QAPPKQKRVL---CMNKVDLVTK--KKDL 276
           +          L+E+  K             +   + +  L    ++  ++       DL
Sbjct: 414 Y---------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 277 LKVAEQ---FKHLPGYERIFMTSGLKGAGLKALTQYL----MEQAVQRPWSEDPLTMSEE 329
           +        + H+ G+    +    +    + +  +L    +EQ ++          S  
Sbjct: 465 IPPYLDQYFYSHI-GHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRH--DSTAWNASGS 519

Query: 330 VMKNIS-LEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQ--RKI 386
           ++  +  L+  +  + D+   +  Y    RL++   + D   +IE++LI +K +   R  
Sbjct: 520 ILNTLQQLKFYKPYICDN---DPKY---ERLVN--AILDFLPKIEENLICSKYTDLLRIA 571

Query: 387 LVGKNGSKIGRIGVEANEEL 406
           L+ ++ +    I  EA++++
Sbjct: 572 LMAEDEA----IFEEAHKQV 587

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 109 KHRALAKALLQAALE--RQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
            +      ++ A+ E  +++ +    K    +++   IIG PN GKS++IN +    +A 
Sbjct: 88  VNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAK 147

Query: 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
              +   TT +      K   ++ + DTPG++  K
Sbjct: 148 TGDRPGITTSQQW---VKVGKELELLDTPGILWPK 179

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 46/204 (22%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH----EVLGVMTKADTQICIFDTPGL 197
           +   G  N GKS++I  + G K     ++   T      E             I D PG 
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWKNHK--------IIDMPGF 54

Query: 198 MLNKSGYSHKDVKVR-----VESAWSAVNLFEVLMVVFDVHRH------------LTSPD 240
                    K+V+ R     V          +V ++V D  +                 D
Sbjct: 55  GFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG-KAAPEIIKRWEKRGEIPID 111

Query: 241 SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMTSG 297
               + +  +    P     ++ +NK+D +   ++++    +   +P     +     S 
Sbjct: 112 VEFYQFLRELDI--PT----IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISA 165

Query: 298 LKGAG----LKALTQYLMEQAVQR 317
             G         + + + E+  +R
Sbjct: 166 KFGDNIERLKNRIFEVIRERQGRR 189

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 59/232 (25%)

Query: 125 QEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTH 176
           +  +E  +  E  K +A VG++G P+ GKS+++        + VS           TT  
Sbjct: 144 EPGKERYIVLE-LKVLADVGLVGFPSVGKSTLL--------SVVSSAKPKIADYHFTTLV 194

Query: 177 EVLGVMTKADTQICIF-DTPGLMLNKSGYSHKDVKVRVESAWSAVNL---F-------EV 225
             LG++   D +  +  D PGL               +E A   V L   F        V
Sbjct: 195 PNLGMVETDDGRSFVMADLPGL---------------IEGAHQGVGLGHQFLRHIERTRV 239

Query: 226 LMVVFDVHRHLTSPDSR----VIRLIERMGKQAPPK---QKRVLCMNKVDLVTKKKDLLK 278
           ++ V D+    +  + R        I +   +   +   + +++  NK+D+    ++L  
Sbjct: 240 IVHVIDM----SGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEA 295

Query: 279 VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEV 330
             E+      Y  +F  S +   GL+ L   +  Q    P  E PL   EE+
Sbjct: 296 FKEKLTD--DYP-VFPISAVTREGLRELLFEVANQLENTP--EFPLYDEEEL 342

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV 160
            +   EE     +   L+ AA      +  E     ++   V ++G  N GKS+ IN ++
Sbjct: 124 MRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRII 183

Query: 161 G-----TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK 210
                   V   S    TT   +       ++   ++DTPG++ +       D +
Sbjct: 184 EEATGKGNVITTSYFPGTTLDMIE---IPLESGATLYDTPGIINHHQMAHFVDAR 235

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 58/244 (23%), Positives = 93/244 (38%), Gaps = 70/244 (28%)

Query: 128 EEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTHEVL 179
           E+  ++ E    +A VG++G PNAGKSS++        AA++R          TT    L
Sbjct: 146 EKRRLRLE-LMLIADVGLVGYPNAGKSSLL--------AAMTRAHPKIAPYPFTTLSPNL 196

Query: 180 GVMTKADTQICIF-DTPGLMLNKSGYSHKDVKVRVESAWSAVNL---F-------EVLMV 228
           GV+  ++ +     D PG+               +E A     L   F        VL+ 
Sbjct: 197 GVVEVSEEERFTLADIPGI---------------IEGASEGKGLGLEFLRHIARTRVLLY 241

Query: 229 VFDVHRHLTSP--DSRVIR---------LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL 277
           V D       P      +R         L+ R           ++ +NKVDL+ ++  + 
Sbjct: 242 VLDAA---DEPLKTLETLRKEVGAYDPALLRR---------PSLVALNKVDLLEEEA-VK 288

Query: 278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLE 337
            +A+      G   +   S L GAGL AL + L       P  E P  +  + ++   +E
Sbjct: 289 ALADALARE-GLA-VLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVPRKEVQA-GVE 345

Query: 338 VVRE 341
           VV  
Sbjct: 346 VVPV 349

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 15/70 (21%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------DTQICI 191
           +   V I+G PN GKS+IIN + G + ++V  +         G+ TK       +  + I
Sbjct: 98  RLARVLIVGVPNTGKSTIINKLKGKRASSVGAQP--------GI-TKGIQWFSLENGVKI 148

Query: 192 FDTPGLMLNK 201
            DTPG++   
Sbjct: 149 LDTPGILYKN 158

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 123 ERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGV 181
               +     +E     + + ++G   AGKS+  N ++G KV        + T +     
Sbjct: 13  NLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS 72

Query: 182 MTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 240
            +  +T++ + DTPG  +  +   + +  K  +            L++V  + R  T  +
Sbjct: 73  SSWKETELVVVDTPG--IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEE 129

Query: 241 SRVIRLIERM-GKQA 254
            +    I +M G++A
Sbjct: 130 HKATEKILKMFGERA 144

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 91  EEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEE-EEVKEEDQKSVAVGIIGAPN 149
           +  +  K++ +     ++         L +A + Q   E  +  E  +    V ++G  N
Sbjct: 111 KSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTN 170

Query: 150 AGKSSIINYMVGT------KVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKS 202
            GKS+ IN M+         V   S    TT    L ++    D +  ++DTPG++ +  
Sbjct: 171 VGKSTFINRMIKEFSDETENVITTSHFPGTT----LDLIDIPLDEESSLYDTPGIINHHQ 226

Query: 203 GYSHKDVK 210
              +   +
Sbjct: 227 MAHYVGKQ 234

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKSS+ N ++  + A V+     T     GV+     +  + DT GL    
Sbjct: 4   VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                 + K++ E    A+   EV++   D    LT  D  V   + R GK        +
Sbjct: 64  K----WEKKIQ-EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK------PVI 112

Query: 262 LCMNKVD 268
           L   KVD
Sbjct: 113 LVATKVD 119

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 123 ERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM 182
                   + +   +  + + ++G    GKS+  N ++  +       + T T       
Sbjct: 6   HSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ 65

Query: 183 TKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS-AVNLFEVLMVVFDVHRHLTSPD 240
                 +I I DTP   +       + +   V+  +  +     VL++V  + R+ TS D
Sbjct: 66  GSWGNREIVIIDTPD--MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRY-TSQD 122

Query: 241 SRVIRLIERM 250
            +  + ++ +
Sbjct: 123 QQAAQRVKEI 132

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 57/200 (28%)

Query: 142 VGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDT 194
             +IG PN GK+++ N +     +V       V +KT        G     +  I I D 
Sbjct: 4   ALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKT--------GEFLLGEHLIEITDL 55

Query: 195 PG---LMLNKSGYSHKDVKVRVESAWSAVN--LFE---VLMVVFDV-----HRHLTSPDS 241
           PG   L+ N  G S +D ++       A    +      ++ V D      H +LT    
Sbjct: 56  PGVYSLVANAEGIS-QDEQI-------AAQSVIDLEYDCIINVIDACHLERHLYLT---- 103

Query: 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMTSGL 298
              +L E +GK        V+ +N +D+   +    D  K+            +      
Sbjct: 104 --SQLFE-LGK------PVVVALNMMDIAEHRGISIDTEKLESLLG-CS----VIPIQAH 149

Query: 299 KGAGLKALTQYLMEQAVQRP 318
           K  G+ AL Q L+  + +  
Sbjct: 150 KNIGIPALQQSLLHCSQKIK 169

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 10/75 (13%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 70  KKQEP----TWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQ 125
             QEP     W E+ R+R   +    +  + + R   +++ E  ++  ++ + +  +  +
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139

Query: 126 EEEEEEVKEEDQKSV 140
             ++   ++ D   +
Sbjct: 140 IADKAFYQQPDADII 154

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 61/224 (27%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADT 187
              KS  + +IG PN GKS+I N + G    +       V +K         G       
Sbjct: 3   SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE--------GEFEYNGE 54

Query: 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWS-----AVN--LFE---VLMVVFD---VHR 234
           +  + D PG+      YS         +A S     A +  + E   +++ + D   + R
Sbjct: 55  KFKVVDLPGV------YSL--------TANSIDEIIARDYIINEKPDLVVNIVDATALER 100

Query: 235 HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYER 291
           +L       ++L+E MG         +L +NK+DL        D+ K+ +    +     
Sbjct: 101 NL----YLTLQLME-MGA------NLLLALNKMDLAKSLGIEIDVDKLEKILG-VK---- 144

Query: 292 IFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNIS 335
           +   S  K  G++ L + +      +  +E      E  +K I+
Sbjct: 145 VVPLSAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEPYIKKIT 188

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 16/193 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKADTQICIFDTPGLMLN 200
           + ++G   +GKSS+ + +     A  +R+   T   E   +    +  + ++D  G  + 
Sbjct: 6   LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260
              Y  K      +         +VL+ VFDV       D  +     +  ++  P  K 
Sbjct: 66  MENYFTKQKDHIFQMV-------QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI 118

Query: 261 VLCMNKVDLVT--KKKDLLKVAEQF------KHLPGYERIFMTSGLKGAGLKALTQYLME 312
            + ++K+DLV   K+++L ++  +       +        F TS    +  KA +Q +  
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCS 178

Query: 313 QAVQRPWSEDPLT 325
                   +  L 
Sbjct: 179 LIPNMSNHQSNLK 191

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV--- 160
           E    + + LA+ LLQ  L     E+E+  +    +  VG+ G P AGKS+ I Y     
Sbjct: 40  ESTHSRKKELAQVLLQKVLL-YHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

Query: 161 ---GTKVA 165
              G K++
Sbjct: 99  TERGHKLS 106

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKADTQICIFDTPGLMLNKS 202
           ++G   +GKSSI   +        +    +T       +   +     I+D PG M    
Sbjct: 25  LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD 84

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262
                ++  R             L+ V D         +R+   + +  K  P     V 
Sbjct: 85  PTFDYEMIFR---------GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135

Query: 263 CMNKVDLVT--KKKDLLKVAEQFK 284
            ++KVD ++   K +  +   Q  
Sbjct: 136 -IHKVDGLSDDHKIETQRDIHQRA 158

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 48/293 (16%), Positives = 91/293 (31%), Gaps = 58/293 (19%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT------------HEVLGVMTKADTQ- 188
           V + G  + GK+S I Y++  +V         TT              V G     D + 
Sbjct: 68  VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEK 127

Query: 189 ----------------------------ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220
                                       I I DTPG++        +         W A 
Sbjct: 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA- 186

Query: 221 NLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279
              ++++++FD H+   S + S  I  +           K  + +NK D+V   + L++V
Sbjct: 187 ERVDLIILLFDAHKLEISDEFSEAIGALRGHED------KIRVVLNKADMVE-TQQLMRV 239

Query: 280 AEQFK-------HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMK 332
                         P   R+++ S      L    + L E   Q  + +         ++
Sbjct: 240 YGALMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALR 299

Query: 333 NI-SLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQR 384
            +  L      +  H +       E   +  K+ +   L ++  +I  K+   
Sbjct: 300 KLNDLVKRARLVRVHAYIISYLKKEMPTVFGKENKKKQLILKLPVIFAKIQLE 352

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 36/186 (19%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSR---KTNTTTHEVLGVMTKADTQICIFDTPGLM 198
           V  +G  N GKSS++N +   K+A VS+   KT +    ++      +++    D PG  
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV------NSKYYFVDLPGY- 78

Query: 199 LNKSGYSHKDVKVRVESAWSAV---------NLFEVLMVVFDVHRHLTSPDSRVIRLIER 249
               GY+    K R+   W  +         +L  V ++V D        D  ++  ++ 
Sbjct: 79  ----GYAKVSKKERML--WKRLVEDYFKNRWSLQMVFLLV-DGRIPPQDSDLMMVEWMKS 131

Query: 250 MGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306
           +    P      + + K+D V      K L +  + F     Y  I  TS + G G+  L
Sbjct: 132 LNI--PF----TIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT-IIPTSSVTGEGISEL 184

Query: 307 TQYLME 312
              +  
Sbjct: 185 LDLIST 190

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 61/244 (25%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQIC 190
           K + +G+IG PN+GK+++ N + G+  +V       V RK         G  +  D Q+ 
Sbjct: 2   KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKE--------GQFSTTDHQVT 53

Query: 191 IFDTPGLMLNKSGYS---HKDVKVRVESAWSAVNLFE---VLMVVFD---VHRHLTSPDS 241
           + D PG       YS           E       L     +L+ V D   + R+L     
Sbjct: 54  LVDLPGT------YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL----Y 103

Query: 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMTSGL 298
             ++L+E +G         ++ +N +D+  K+    ++  ++ +    P    +      
Sbjct: 104 LTLQLLE-LGI------PCIVALNMLDIAEKQNIRIEIDALSARLG-CP----VIPLVST 151

Query: 299 KGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHR 358
           +G G++AL   +           + +  ++ +              D + + +P  I  +
Sbjct: 152 RGRGIEALKLAIDRYKANEN--VELVHYAQPL----------LNEADSLAKVMPSDIPLK 199

Query: 359 LIDW 362
              W
Sbjct: 200 QRRW 203

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 61/204 (29%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQIC 190
             V V + G PN GK+S+ N + GT   VA      V +K         GV T     I 
Sbjct: 4   HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKE--------GVFTYKGYTIN 55

Query: 191 IFDTPG---LMLNKSGYSHKDVKVRVESAWSAVN--LFE---VLMVVFD---VHRHL--T 237
           + D PG   L       S  D K+       A +  L     ++++V D     + L   
Sbjct: 56  LIDLPGTYSL----GYSS-IDEKI-------ARDYLLKGDADLVILVADSVNPEQSLYLL 103

Query: 238 SPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFM 294
                 + ++E M K      K +L M  +D   K     D  ++ +    +P    +  
Sbjct: 104 ------LEILE-MEK------KVILAMTAIDEAKKTGMKIDRYELQKHLG-IP----VVF 145

Query: 295 TSGLKGAGLKALTQYLMEQAVQRP 318
           TS + G GL+ L + ++E A +  
Sbjct: 146 TSSVTGEGLEELKEKIVEYAQKNT 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	100.0
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	100.0
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	100.0
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.88
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.88
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.87
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.87
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.87
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.87
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.87
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.87
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.87
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.87
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.86
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.86
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.86
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.86
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.86
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.86
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.86
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.86
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.86
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.86
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.86
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.86
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.86
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.86
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.86
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.86
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.85
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.85
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.85
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.85
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.85
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.85
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.85
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.85
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.85
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.85
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.85
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.85
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.85
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.85
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.85
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.85
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.85
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.85
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.84
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.84
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.84
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.84
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.84
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.84
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.84
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.84
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.84
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.84
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.84
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.84
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.84
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.84
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.84
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.84
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.84
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.84
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.84
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.84
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.84
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.83
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.83
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.83
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.83
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.83
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.83
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.83
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.83
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.83
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.83
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.83
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.83
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.83
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.83
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.83
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.83
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.83
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.82
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.82
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.82
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.82
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.82
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.82
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.82
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.81
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.81
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.81
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.8
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.8
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.8
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.79
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.79
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.79
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.65
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.77
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.77
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.77
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.77
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.76
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.76
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.75
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.74
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.74
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.74
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.73
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.73
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.73
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.73
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.73
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.73
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.73
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.73
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.73
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.73
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.72
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.71
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.71
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.71
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.71
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.71
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.7
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.68
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.68
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.68
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.68
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.68
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.67
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.67
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.66
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.66
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.65
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.65
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.65
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.64
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.64
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.63
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.63
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.62
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.61
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.61
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.6
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.59
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.57
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.57
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.56
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.53
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.52
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.51
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.51
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.5
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.5
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.49
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.4
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.39
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.36
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.32
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.28
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.27
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.24
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.2
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.09
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.96
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.96
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.95
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.86
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.82
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.76
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.71
2xxa_A	433	Signal recognition particle protein; protein trans	98.63
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.62
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.62
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.57
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.54
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.43
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.38
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.33
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.23
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.2
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.2
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.15
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.12
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.88
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.83
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.82
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.76
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.6
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.44
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.39
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.33
2og2_A	359	Putative signal recognition particle receptor; nuc	97.25
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.25
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.12
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.05
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.04
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.94
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.87
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.61
3end_A	307	Light-independent protochlorophyllide reductase ir	96.46
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.38
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.31
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.3
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.29
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.18
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.15
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.11
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.11
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.08
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.01
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.99
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.95
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.91
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.87
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.84
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.84
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.8
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.78
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.76
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.74
1g6h_A	257	High-affinity branched-chain amino acid transport	95.72
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.72
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.72
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.71
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.71
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	95.71
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.71
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.7
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.7
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.66
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.65
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.63
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.63
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.63
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	95.62
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.61
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.56
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.54
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.54
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.51
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.5
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.49
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.48
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.47
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.47
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.38
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.36
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.33
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.31
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.24
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.23
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.23
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.21
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.2
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.17
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.14
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.14
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.12
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.08
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	95.08
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.04
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.01
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.98
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.98
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.96
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.94
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.91
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.82
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.81
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.79
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.79
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.78
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.77
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.76
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.75
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.75
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.73
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.73
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.72
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.72
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.7
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.69
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.67
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.67
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.66
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.66
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.65
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.65
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.64
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.64
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.62
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.62
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.6
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.58
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.53
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	94.49
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.46
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.45
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.43
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.42
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.4
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.4
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.37
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.36
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.36
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.36
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.35
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.34
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.34
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.29
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.26
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.26
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.22
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.17
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.16
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.15
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.13
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.11
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.07
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.06
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.04
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.04
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.04
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.02
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.01
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.0
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.99
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.99
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.99
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	93.91
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	93.88
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.81
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.81
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.76
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.75
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	93.72
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.69
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.69
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	93.67
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.67
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.63
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.6
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	93.6
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.56
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.51
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.5
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.5
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	93.47
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	93.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.41
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.41
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.4
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	93.38
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.32
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.29
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.29
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.27
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.24
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.18
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	93.12
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.12
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	93.09
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.08
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.07
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	93.06
1via_A	175	Shikimate kinase; structural genomics, transferase	93.05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	92.98
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	92.93
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.93
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.89
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	92.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.86
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	92.85
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	92.85
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	92.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	92.75
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.75
2cvh_A	220	DNA repair and recombination protein RADB; filamen	92.71
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	92.7
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.69
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	92.68
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	92.66
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	92.62
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	92.52
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	92.52
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.52
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.44
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	92.43
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	92.42
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.37
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	92.3
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.04
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	91.92
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	91.92
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	91.8
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	91.77
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	91.72
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	91.67
3bos_A	242	Putative DNA replication factor; P-loop containing	91.61
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	91.57
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	91.54
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	91.5
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.48
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	91.46
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	91.44
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	91.23
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	91.23
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	91.22
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	91.19
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	91.19
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	91.14
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	91.11
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	90.99
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	90.91
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.88
1tue_A	212	Replication protein E1; helicase, replication, E1E	90.71
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	90.64
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.61
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	90.57
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.54
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.47
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	90.46
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	90.44
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	90.36
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	90.28
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	90.24
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	90.2
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	90.14
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.14
3co5_A	143	Putative two-component system transcriptional RES	90.06
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.05
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.01
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	89.94
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	89.84
2chg_A	226	Replication factor C small subunit; DNA-binding pr	89.75
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	89.74
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	89.71
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	89.68
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	89.62

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=100.00  E-value=3.2e-52  Score=402.08  Aligned_cols=284  Identities=26%  Similarity=0.380  Sum_probs=242.8

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      +..+....|+++|.||||||||+|+|++.+++.++..+++|+....+....+ +.++.||||||+..+...  ......+
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~--~~l~~~~   82 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS--DVLGHSM   82 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT--CHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc--hhHHHHH
Confidence            3456788999999999999999999999999888999999999988888888 899999999999865411  1222344


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC-CCCe
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYER  291 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~  291 (424)
                      ...+...+..+|++++|+|++++.+..+..+  |+..+..   .+.|+++|+||+|+...........+.+.... .+.+
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~--~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~  157 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEI--YQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE  157 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHH--HHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHH--HHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence            5566667889999999999987655544433  2333332   14789999999999844456666677777665 4567


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEecc--CCe
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLR--DGS  369 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~--~~~  369 (424)
                      ++++||++|.|+++|+++|.+.++++++.|++...++.+.++++.|++||++++.+.+|+||++++.+++|++..  ++.
T Consensus       158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~  237 (308)
T 3iev_A          158 IVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNM  237 (308)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999865  468


Q ss_pred             EEEEEEEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461          370 LRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       370 ~~i~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~  424 (424)
                      ++|.+.|+|+|+|||+||||++|++||+||++||++|+++|+++|||+|||||++
T Consensus       238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~vkv~~  292 (308)
T 3iev_A          238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVP  292 (308)
T ss_dssp             EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEEEEECT
T ss_pred             EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999986

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=100.00  E-value=5.4e-51  Score=391.66  Aligned_cols=277  Identities=25%  Similarity=0.372  Sum_probs=235.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|.||||||||+|+|++.+++.+++.++||++...+.+..++.++.+|||||+..+..    .....+...+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~----~l~~~~~~~~   80 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD----ALGEFMDQEV   80 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS----HHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh----HHHHHHHHHH
Confidence            456789999999999999999999999988889999999888888888889999999999986532    1112345556


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|++++.+..+..+.+.+....    ++.|+++|+||+|+......+.+..+.+   .++.+++++|
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iS  153 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV----GKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLS  153 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT----TTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECC
T ss_pred             HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc----CCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEe
Confidence            67788999999999998776555444444444431    2479999999999986533134444444   4566799999


Q ss_pred             cCCCcChHHHHHHHHHhccCCCCCCCCCCc-chhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEE
Q 014461          297 GLKGAGLKALTQYLMEQAVQRPWSEDPLTM-SEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQH  375 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~  375 (424)
                      |++|.|++++++.|.+.++++++.|++... ++.+.+++.+|++|+++++.+.+|+||++.+.++.|++.+++.++|.+.
T Consensus       154 A~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~  233 (301)
T 1wf3_A          154 ALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAI  233 (301)
T ss_dssp             TTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEE
Confidence            999999999999999999999988888888 8888888899999999999999999999999999999866788999999


Q ss_pred             EEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461          376 LITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       376 i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~  424 (424)
                      |+|||+|||+||||++|++||+||++||++|+++|+++|||+|||||++
T Consensus       234 i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~l~vkv~~  282 (301)
T 1wf3_A          234 LYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYP  282 (301)
T ss_dssp             EEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEEEEEEECT
T ss_pred             EEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEEEEEEECC
Confidence            9999999999999999999999999999999999999999999999986

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=100.00  E-value=7.8e-48  Score=370.13  Aligned_cols=276  Identities=27%  Similarity=0.452  Sum_probs=236.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcc-cCCCCCChhhh-hhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDV-KVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~-~~~~~~~~~~~-~~~~~  214 (424)
                      .++.+|+++|+||||||||+|+|++.+++.++..+++|++...+.+..++.++.+|||||+. .+.     ..+ ..+..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~   80 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNK   80 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-----hhHHHHHHH
Confidence            35678999999999999999999999988888899999988888888888999999999986 321     111 11122


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .+...+..+|++++|+|+++ ++..+..+.+.+..      .+.|+++|+||+|+......+.+....+.+..++..+++
T Consensus        81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~  153 (301)
T 1ega_A           81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE------GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVP  153 (301)
T ss_dssp             CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS------SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh------cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEE
Confidence            23456788999999999976 55554444444432      247899999999998744566677777877777767999


Q ss_pred             EecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEE
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQ  374 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~  374 (424)
                      +||++|.|+++|++.|.+.++++++.|++...++.+.+++.+|++|+++++.+.+|+||++++.+++|.+..++.++|.+
T Consensus       154 iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~  233 (301)
T 1ega_A          154 ISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDING  233 (301)
T ss_dssp             CCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEE
T ss_pred             EECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEE
Confidence            99999999999999999999999998988888999988889999999999999999999999999999876678899999


Q ss_pred             EEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461          375 HLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       375 ~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~  424 (424)
                      .|+|+++|||+||||++|++||+||.+||.+|+++|+++|+|+|||||++
T Consensus       234 ~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~  283 (301)
T 1ega_A          234 LILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKS  283 (301)
T ss_dssp             EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETT
T ss_pred             EEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECC
Confidence            99999999999999999999999999999999999999999999999985

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.89  E-value=1.3e-22  Score=185.29  Aligned_cols=175  Identities=20%  Similarity=0.217  Sum_probs=123.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEe-cCCccEEEEeCCCcccCCCCCCh-hhhhhHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSH-KDVKVRV  213 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~-~~~~~~~  213 (424)
                      ...++|+++|.+|||||||+|+|++.. ...++..+++|......... ..+..+.+|||||+......... .......
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            346899999999999999999999987 56678888888876555554 56788999999998654221111 1122334


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcC----
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL----  286 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~----  286 (424)
                      ...+.....+|++++|+|++++.+..+..+..++...      +.|+++|+||+|+.....   ......+.+...    
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT------GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            4555556668999999999876665555555555542      478999999999987432   122222333332    


Q ss_pred             -CCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          287 -PGYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       287 -~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                       ....+++++||++|.|+++++++|.+.++..
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             2344699999999999999999999988643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.89  E-value=6.2e-23  Score=180.35  Aligned_cols=164  Identities=21%  Similarity=0.275  Sum_probs=118.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ...+|+++|.+|||||||+|+|.+.....++..+++|++.....+..++..+.+|||||+.....    ......+..++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   78 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD----EVERIGIERAW   78 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS----HHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh----HHHHHHHHHHH
Confidence            46789999999999999999999987666778888888777777777788899999999865321    11112344556


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|+++..+.....+...+....   ..+.|+++|+||+|+......       +.... ..+++++||
T Consensus        79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~-------~~~~~-~~~~~~~SA  147 (172)
T 2gj8_A           79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL---PAKLPITVVRNKADITGETLG-------MSEVN-GHALIRLSA  147 (172)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCCE-------EEEET-TEEEEECCT
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhc---ccCCCEEEEEECccCCcchhh-------hhhcc-CCceEEEeC
Confidence            6778899999999998766554444444444332   235899999999998543111       11112 235899999


Q ss_pred             CCCcChHHHHHHHHHhccC
Q 014461          298 LKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++|.|+++++++|.+.+..
T Consensus       148 ~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          148 RTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TTCTTHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHhhh
Confidence            9999999999999988743

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=5.2e-22  Score=201.05  Aligned_cols=166  Identities=20%  Similarity=0.255  Sum_probs=100.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+++|+++|.||||||||+|+|++.....+++.++||++.....+..++.++.+|||||+..+....    ...++..+
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~v----e~~gi~~~  306 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEI----EHEGIRRS  306 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHH----HHHHHHHH
Confidence            35688999999999999999999998877789999999998877788889999999999997542111    12335667


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      +..+..+|++++|+|++++.+.... ....++..+.     +.|+++|+||+|+........   +.+... ++.+++++
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~~~~~---~~l~~~-~~~~~i~v  377 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADALI---RAIADG-TGTEVIGI  377 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTTHHHH---HHHHHH-HTSCEEEC
T ss_pred             HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCccchhH---HHHHhc-CCCceEEE
Confidence            7788999999999999876544221 3445555543     479999999999987533211   223322 12459999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++|+++|.+.+.
T Consensus       378 SAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTTBSHHHHHHHHTHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHh
Confidence            99999999999999999886

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.88  E-value=1.3e-22  Score=175.12  Aligned_cols=160  Identities=26%  Similarity=0.277  Sum_probs=111.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ++|+++|.+|+|||||+|+|.+.........+++|.......+...+..+.+|||||...... .    ...........
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~----~~~~~~~~~~~   76 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-W----EKKIQEKVDRA   76 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-C----CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-h----HHHHHHHHHHH
Confidence            589999999999999999999887665677777777766666777788999999999875431 1    11112233345


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..+|++++|+|+++..+.....+..++...      +.|+++|+||+|+......    ...+. ..++.+++++||++
T Consensus        77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~~~~~~~~Sa~~  145 (161)
T 2dyk_A           77 LEDAEVVLFAVDGRAELTQADYEVAEYLRRK------GKPVILVATKVDDPKHELY----LGPLY-GLGFGDPIPTSSEH  145 (161)
T ss_dssp             TTTCSEEEEEEESSSCCCHHHHHHHHHHHHH------TCCEEEEEECCCSGGGGGG----CGGGG-GGSSCSCEECBTTT
T ss_pred             HHhCCEEEEEEECCCcccHhHHHHHHHHHhc------CCCEEEEEECcccccchHh----HHHHH-hCCCCCeEEEeccc
Confidence            7889999999999876665555566666652      4789999999999764222    22333 23554589999999


Q ss_pred             CcChHHHHHHHHHhcc
Q 014461          300 GAGLKALTQYLMEQAV  315 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~  315 (424)
                      |.|+++++++|.+.++
T Consensus       146 ~~gv~~l~~~l~~~l~  161 (161)
T 2dyk_A          146 ARGLEELLEAIWERLP  161 (161)
T ss_dssp             TBSHHHHHHHHHHHCC
T ss_pred             CCChHHHHHHHHHhCc
Confidence            9999999999998763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=6.5e-23  Score=207.80  Aligned_cols=173  Identities=26%  Similarity=0.370  Sum_probs=123.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ....+|+++|.+|+|||||+|+|++.....+++.+++|++.....+..++..+.+|||||+........ .........+
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~  271 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRA  271 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCC-CCSHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccch-HHHHHHHHHH
Confidence            457899999999999999999999988777899999998876666777888999999999864321111 0112234445


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-hHHHHHHHHhc---CCCCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKH---LPGYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~---~~~~~~~  292 (424)
                      +..+..+|++++|+|++++....+..+..++.+.      +.|+++|+||+|+...+. ...+..+.+..   ..+..++
T Consensus       272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~------~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc------CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            5567889999999999987777666666666653      478999999999986432 22222222222   2234569


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|+++++++|.+.+..
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=5.8e-23  Score=207.01  Aligned_cols=172  Identities=27%  Similarity=0.391  Sum_probs=118.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ....+|+++|.+|||||||+|+|++.....+++.+++|++.....+..++..+.+|||||+........ ........++
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~  251 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRA  251 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCC-CCSHHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccc-hHHHHHHHHH
Confidence            356899999999999999999999998887899999999887777777888999999999865432110 0011223344


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh-HHHHHH----HHhcCCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-LLKVAE----QFKHLPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~----~~~~~~~~~~  291 (424)
                      ...+..+|++++|+|++++.+..+..+...+.+.      +.|+++|+||+|+.+.... ..+..+    .+... ...+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~-~~~~  324 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL-DYAP  324 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG-TTSC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc------CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC-CCCC
Confidence            5567889999999999987766555554444432      4789999999999864332 222222    22222 2345


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++++||++|.|++++++.+.+.+..
T Consensus       325 ~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          325 ILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.88  E-value=1.6e-21  Score=173.59  Aligned_cols=170  Identities=19%  Similarity=0.219  Sum_probs=120.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~~  215 (424)
                      ...++|+++|.+|||||||+|+|++.......+.+++|......   ..+.++.+|||||+........ ..........
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence            34679999999999999999999998877677777777665433   2356789999999754321100 0112223344


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHHHHHhcCCCCCeEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  293 (424)
                      .+.....+|++++|+|++.........+..++...      +.|+++|+||+|+....  ....+....+....+..+++
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII  171 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred             HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence            44555667999999999876655555666777665      37899999999997642  22233344444444444699


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++||++|.|+++++++|.+.+.
T Consensus       172 ~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          172 PTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEecCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999998874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.9e-22  Score=180.23  Aligned_cols=168  Identities=18%  Similarity=0.168  Sum_probs=113.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcce-eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ..+.++|+++|.+|||||||+|+|++..+. ......+++.......+......+.+|||||...+..         .. 
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~-   89 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS---------LA-   89 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG---------GT-
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh---------hh-
Confidence            345789999999999999999999987653 2344445444433333333456799999999754321         11 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus        90 --~~~~~~~d~iilV~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  164 (192)
T 2fg5_A           90 --PMYYRGSAAAVIVYDITKQD--SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVE  164 (192)
T ss_dssp             --HHHHTTCSEEEEEEETTCTH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEE
T ss_pred             --HHhhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence              12356789999999997532  223344555554433334589999999999975323233445555555565 4999


Q ss_pred             EecCCCcChHHHHHHHHHhccCCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      +||++|.|+++++++|.+.+...+
T Consensus       165 ~Sa~~~~gi~~l~~~l~~~i~~~~  188 (192)
T 2fg5_A          165 TSAKNAINIEELFQGISRQIPPLD  188 (192)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCC---
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhhC
Confidence            999999999999999999886544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.88  E-value=6.3e-23  Score=194.08  Aligned_cols=169  Identities=18%  Similarity=0.308  Sum_probs=121.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.++|+++|.+|||||||+|+|++... .+++.+++|.+...+.+...+..+.+|||||+...............+.+.+
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            468999999999999999999999874 6889999999888888888888999999999986542111111223344444


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .....+|++++|+|+++  ......+..++.+.      +.|+++|+||+|+..... .....+.+.+..+. +++++||
T Consensus        81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~-~~~~~~~l~~~lg~-~~i~~SA  150 (274)
T 3i8s_A           81 ILSGDADLLINVVDASN--LERNLYLTLQLLEL------GIPCIVALNMLDIAEKQN-IRIEIDALSARLGC-PVIPLVS  150 (274)
T ss_dssp             HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTT-EEECHHHHHHHHTS-CEEECCC
T ss_pred             HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhc------CCCEEEEEECccchhhhh-HHHHHHHHHHhcCC-CEEEEEc
Confidence            44578999999999975  12222344445444      378999999999864321 10112223333344 4999999


Q ss_pred             CCCcChHHHHHHHHHhccCC
Q 014461          298 LKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ++|.|+++|+++|.+.++..
T Consensus       151 ~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          151 TRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999988654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=1.9e-22  Score=203.34  Aligned_cols=249  Identities=21%  Similarity=0.234  Sum_probs=150.7

Q ss_pred             CCcEEEEeCCCCc------------------cCCC-CCCCCCCCccChhhHHHHHHhcCC-eEEEeec-cccccchhhhH
Q 014461           45 DCDSVFDSSYFRI------------------PTID-DPQNNNAAKKQEPTWDEKYRERTD-RIVFGEE-AQKGKLRIFQE  103 (424)
Q Consensus        45 ~~d~vie~~dar~------------------p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~-~i~f~~~-~~~~~~~l~~~  103 (424)
                      .+|+++-+-|++.                  |++. .||+|+........+..++ ..+. .++.+|+ ++.|...+...
T Consensus        81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~  159 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLET  159 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHH
Confidence            5787777777654                  3333 5577875321112222333 4443 4677777 88887766211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe
Q 014461          104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT  183 (424)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~  183 (424)
                                   +.+. +....... .........++|+++|+||||||||+|+|++.....+++.+++|++...+.+.
T Consensus       160 -------------i~~~-l~~~~~~~-~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~  224 (439)
T 1mky_A          160 -------------IIKK-LEEKGLDL-ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF  224 (439)
T ss_dssp             -------------HHHH-HHHTTCCS-SSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE
T ss_pred             -------------HHHh-cccccccc-hhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE
Confidence                         1111 11000000 00001234689999999999999999999999888889999999988777788


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      .++..+.+|||||+..................+...+..+|++++|+|++.+.+..+..+...+...      +.|+++|
T Consensus       225 ~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~------~~~~ilv  298 (439)
T 1mky_A          225 IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR------GRASVVV  298 (439)
T ss_dssp             ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEE
T ss_pred             ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEE
Confidence            8888999999999854321100000001112334556778999999999876665555555555543      4789999


Q ss_pred             EecCCCCCChhh-HHHHH----HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          264 MNKVDLVTKKKD-LLKVA----EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       264 ~NK~Dl~~~~~~-~~~~~----~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +||+|+...... ..+..    +.+... ...+++++||++|.|+++|++.+.+.+..
T Consensus       299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          299 FNKWDLVVHREKRYDEFTKLFREKLYFI-DYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             EECGGGSTTGGGCHHHHHHHHHHHCGGG-TTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EECccCCCchhhHHHHHHHHHHHHhccC-CCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999864321 22222    222222 33469999999999999999999987754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.87  E-value=3.3e-21  Score=172.02  Aligned_cols=169  Identities=17%  Similarity=0.192  Sum_probs=107.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++.. .......+++|........   +.++.+|||||+........ .........
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            357899999999999999999999886 4455666777766543322   44799999999764421100 011122233


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH---HHHHHHHhcCCCCCe
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYER  291 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~  291 (424)
                      ..+.....+|++++|+|++++.+..+..+..++...      +.|+++|+||+|+.......   .+..+.+... ...+
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  170 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDE  170 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSE
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECcccCChHHHHHHHHHHHHHHccc-CCCc
Confidence            333444556999999999876665555556666552      47899999999998753211   1222224322 3346


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++++||++|.|+++++++|.+.+.
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             eEEEEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999999988763

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=9e-23  Score=191.40  Aligned_cols=190  Identities=14%  Similarity=0.101  Sum_probs=128.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC-ceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ..+.++|+++|.+|||||||+|+|++......+..+. +|+......+...+.++.+|||||+..+..... ........
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~-~~~~~i~~   97 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCE-ALYKEVQR   97 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCH-HHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHH-HHHHHHHH
Confidence            3457899999999999999999999987655555555 677777777778889999999999986543211 11122244


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe-cCCCCCChhhHHH------------HHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN-KVDLVTKKKDLLK------------VAE  281 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N-K~Dl~~~~~~~~~------------~~~  281 (424)
                      ..+..+..+|++++|+|+++ +...+..+..++.+...... ..|.++|+| |+|+....  ...            ...
T Consensus        98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGGS--LMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCcc--HHHHHHhcchHHHHHHHH
Confidence            44556788999999999974 45444556666766532111 246677776 99998532  222            333


Q ss_pred             HHhcCCC-CCeEEEEecCCCcChHHHHHHHHHhccCCC-CCCCCCCcchhhH
Q 014461          282 QFKHLPG-YERIFMTSGLKGAGLKALTQYLMEQAVQRP-WSEDPLTMSEEVM  331 (424)
Q Consensus       282 ~~~~~~~-~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~-~~~~~~~~~~~~~  331 (424)
                      .+..... +.+ +++||++|.|+++++++|.+.+...+ +.|+...+++.+.
T Consensus       174 ~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (260)
T 2xtp_A          174 ACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR  224 (260)
T ss_dssp             HTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred             HhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence            3332221 332 78999999999999999999998766 5666555544443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.87  E-value=4.8e-22  Score=173.92  Aligned_cols=165  Identities=15%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ..++|+++|.+|||||||+|+|.+..+......++++.......+......+.+|||||.....    +    ..+.  .
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~----~~~~--~   72 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD----K----SWSQ--E   72 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHH--H
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc----h----hhhH--H
Confidence            4689999999999999999999998877666666655433322222223468899999976421    0    1111  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|+++..  ....+..|+..+... ...+.|+++|+||+|+...+....+....+....+. +++++|
T Consensus        73 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           73 SCLQGGSAYVIVYSIADRG--SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             HTTTSCSEEEEEEETTCHH--HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECB
T ss_pred             hhcccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEe
Confidence            3456789999999997532  222333444433321 123589999999999976433222333344433344 599999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.|+++++++|.+.+.
T Consensus       150 a~~g~gi~~l~~~l~~~~~  168 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLR  168 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=6.8e-22  Score=173.90  Aligned_cols=165  Identities=15%  Similarity=0.139  Sum_probs=108.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+......+.++.......+..++  ..+.+|||||...+..            
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------   75 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS------------   75 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH------------
Confidence            45789999999999999999999987764333334333333333334444  4789999999754321            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .....+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus        76 ~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  152 (180)
T 2g6b_A           76 VTHAYYRDAHALLLLYDVTNKAS--FDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFME  152 (180)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEE
T ss_pred             HHHHHccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEE
Confidence            12245678899999999975321  22233444443332224589999999999986433223333444443455 4999


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +||++|.|+++++++|.+.+..
T Consensus       153 ~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          153 TSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.87  E-value=3.3e-22  Score=173.99  Aligned_cols=163  Identities=16%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      +.++|+++|.+|||||||+|+|++..+.. ..+..+++.......+......+.+|||||...+..         ..   
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~---   72 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA---------LA---   72 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---------GT---
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc---------cc---
Confidence            46899999999999999999999876532 233334343333322333346789999999854321         11   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|+++..  ....+..|+..+.....+..|+++|+||+|+...++...+....+....+. +++++|
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S  149 (170)
T 1z0j_A           73 PMYYRGSAAAIIVYDITKEE--TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETS  149 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECB
T ss_pred             HhhCcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEe
Confidence            12356789999999997532  222334444444333345689999999999976433333444555544454 599999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.|+++++++|.+.+.
T Consensus       150 a~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          150 AKNAININELFIEISRRIP  168 (170)
T ss_dssp             TTTTBSHHHHHHHHHHHCC
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999998874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.87  E-value=3.7e-22  Score=173.52  Aligned_cols=165  Identities=16%  Similarity=0.162  Sum_probs=108.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeec-CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .+.++|+++|.+|||||||+|+|++..+.... ...+++.......+...+..+.+|||||.....         ...  
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~--   72 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---------SLA--   72 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---------GGH--
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh---------hhh--
Confidence            35689999999999999999999987654322 222333322222233335678999999975431         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ...+..+|++++|+|+++..  ....+..|+..+.....++.|+++|+||+|+...+....+....+....+. +++++
T Consensus        73 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (170)
T 1r2q_A           73 -PMYYRGAQAAIVVYDITNEE--SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMET  148 (170)
T ss_dssp             -HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             -HHhccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEE
Confidence             23456789999999997532  223344555544433334689999999999965322222233344444454 49999


Q ss_pred             ecCCCcChHHHHHHHHHhccC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ||++|.|+++++++|.+.+.+
T Consensus       149 Sa~~g~gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          149 SAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             CTTTCTTHHHHHHHHHHTSCC
T ss_pred             eCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999988753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.87  E-value=4.3e-25  Score=227.75  Aligned_cols=235  Identities=19%  Similarity=0.257  Sum_probs=149.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcce--eecCCCCceeeEEEEE---------------------------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGV---------------------------------  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~--~~~~~~~tt~~~~~~~---------------------------------  181 (424)
                      ....+|+|+|.+|+|||||+|+|++.++.  .++..++|++......                                 
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            35689999999999999999999998875  4677777654321110                                 


Q ss_pred             ---EecCC---ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCC
Q 014461          182 ---MTKAD---TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQA  254 (424)
Q Consensus       182 ---~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~  254 (424)
                         +...+   .++.||||||+............ .....+...+..+|++++|+|+++. ....+   ..++..+... 
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~-~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~---~~~l~~l~~~-  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGY-DFPAVLRWFAERVDLIILLFDAHKLEISDEF---SEAIGALRGH-  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCS-CHHHHHHHHHHHCSEEEEEEETTSCCCCHHH---HHHHHHTTTC-
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHh-hHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH---HHHHHHHHhc-
Confidence               00000   36899999999753210000000 0122333456778999999999752 33222   3344444321 


Q ss_pred             CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHH
Q 014461          255 PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNI  334 (424)
Q Consensus       255 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~  334 (424)
                        +.|+++|+||+|+... ..+......+.  ..+..++++|.        +.+     ++.+++.+++... +...+++
T Consensus       218 --~~pvilVlNK~Dl~~~-~el~~~~~~l~--~s~~~i~~vs~--------l~~-----~~~~~~~~~~~~~-~~~~~~~  278 (550)
T 2qpt_A          218 --EDKIRVVLNKADMVET-QQLMRVYGALM--WALGKVVGTPE--------VLR-----VYIGSFWSQPLLV-PDNRRLF  278 (550)
T ss_dssp             --GGGEEEEEECGGGSCH-HHHHHHHHHHH--HHHHHHHCCSS--------CCC-----EEESCCSSSCCSS-CTTHHHH
T ss_pred             --CCCEEEEEECCCccCH-HHHHHHHHHhh--cchhheeechH--------hhh-----hccccCCCCcccC-CCCHHHH
Confidence              3689999999999864 34444444443  01112333332        221     1334555555544 6677778


Q ss_pred             HHHHHHHHHHhhcCccCCcceEEE-EEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCchHHHHH
Q 014461          335 SLEVVRERLLDHVHQEIPYSIEHR-LIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIG  399 (424)
Q Consensus       335 ~~e~ire~l~~~l~~eip~~~~~~-~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~~i~~i~  399 (424)
                      .+|+  |+++..+ +|+||+..++ ++++.+. ++.++|.+.|+|+++|||+|+||++|++.+-+.
T Consensus       279 ~~E~--e~l~~~l-~elP~~~~v~~i~~~~~~-~~~~~I~a~I~v~~~sqk~i~iGk~g~~~~li~  340 (550)
T 2qpt_A          279 ELEE--QDLFRDI-QGLPRHAALRKLNDLVKR-ARLVRVHAYIISYLKKEMPTVFGKENKKKQLIL  340 (550)
T ss_dssp             HHHH--HHHHHHH-HTTGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred             HHHH--HHHHHHh-hhccHHHHHHHHHHHhcc-CCeEEEEEEEEEeecccceeEECCchHHHHHHH
Confidence            8787  8898886 8999998876 4444432 356789999999999999999999998776554

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.87  E-value=6.5e-22  Score=171.67  Aligned_cols=161  Identities=16%  Similarity=0.168  Sum_probs=98.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .++|+++|.+|||||||+|+|.+.........++++..... .+......+.+|||||...+...            ...
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~------------~~~   68 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQDGGRWL------------PGH   68 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCccchhh------------hhh
Confidence            47899999999999999999998877666666666664322 23334456889999997654211            112


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .+..+|++++|+|+++..  ....+..++..+... ...+.|+++|+||+|+...+.........+....+. +++++||
T Consensus        69 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  145 (166)
T 3q72_A           69 CMAMGDAYVIVYSVTDKG--SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSA  145 (166)
T ss_dssp             ----CCEEEEEEETTCHH--HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBG
T ss_pred             hhhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEecc
Confidence            356789999999997532  223344444444322 224589999999999986544334444555555555 5999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.|+++++++|.+.+.
T Consensus       146 ~~~~gi~~l~~~l~~~~~  163 (166)
T 3q72_A          146 ALHHNVQALFEGVVRQIR  163 (166)
T ss_dssp             GGTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988763

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.87  E-value=2e-22  Score=183.73  Aligned_cols=165  Identities=17%  Similarity=0.188  Sum_probs=109.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.+||+++|.+|||||||+++++...+.... .+....+........+  ...+.+|||+|...+..      +   ..
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~-~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~------l---~~   80 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS------L---IP   80 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTCGG------G---HH
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCc-CCccceEEEEEEEEecceEEEEEEEECCCchhhhh------H---HH
Confidence            45689999999999999999999977664211 1111112222223333  34678999999875421      1   11


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                         ..++.+|++++|+|.++.  .....+..|+..+.....++.|+++|+||+|+...+....+..+.+....+.. +++
T Consensus        81 ---~~~~~a~~~ilv~di~~~--~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e  154 (216)
T 4dkx_A           81 ---SYIRDSAAAVVVYDITNV--NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIE  154 (216)
T ss_dssp             ---HHHTTCSEEEEEEETTCH--HHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEE
T ss_pred             ---HHhccccEEEEEeecchh--HHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEE
Confidence               246788999999999753  22334455555544433456899999999999765444445556666666664 999


Q ss_pred             EecCCCcChHHHHHHHHHhccCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      |||++|.||+++|+.|.+.+...
T Consensus       155 ~SAktg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          155 TSAKAGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             EBTTTTBSHHHHHHHHHHHC---
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhh
Confidence            99999999999999999988543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.87  E-value=3.1e-21  Score=177.28  Aligned_cols=174  Identities=20%  Similarity=0.224  Sum_probs=115.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+|+|++..+. +...+++|.......+...+..+.+|||||+.......  .. .......
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~-~~~~~~~  102 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN--RN-TIEMTTI  102 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGG--CC-HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccch--hh-hHHHHHH
Confidence            56799999999999999999999998876 56677777777666666677899999999986421100  00 0001111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCC-CCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPG-YERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~-~~~~  292 (424)
                      ......+|++++|+|+++..+........++..+... .++.|+++|+||+|+...+.   ........+....+ ..++
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            1225677999999999876554433344555554432 12589999999999976432   12223444444333 2469


Q ss_pred             EEEecCCCcChHHHHHHHHHhcc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|||++|.|+++++++|.+.+.
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHH
Confidence            99999999999999999998874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=171.59  Aligned_cols=162  Identities=20%  Similarity=0.185  Sum_probs=110.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+. ....+..+.......+...+  ..+.+|||||........          
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------   75 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT----------   75 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH----------
Confidence            45789999999999999999999988765 33344444444444455555  578999999976543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|++++  .....+..|+..+.... ++.|+++|+||+|+...+.........+....+. ++++
T Consensus        76 --~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  149 (181)
T 3tw8_B           76 --STYYRGTHGVIVVYDVTSA--ESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFE  149 (181)
T ss_dssp             --GGGGTTCSEEEEEEETTCH--HHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEE
T ss_pred             --HHHhccCCEEEEEEECCCH--HHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEE
Confidence              1245778999999999763  22334445555544322 3589999999999875432222333444444455 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       150 ~Sa~~~~gi~~l~~~l~~~~~  170 (181)
T 3tw8_B          150 TSAKENVNVEEMFNCITELVL  170 (181)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=175.09  Aligned_cols=166  Identities=19%  Similarity=0.188  Sum_probs=114.0

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      .....++|+++|.+|||||||+|+|++..+.. ...+.++.......+..++  ..+.+|||||......         .
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~   81 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT---------I   81 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT---------T
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh---------h
Confidence            33457899999999999999999999876642 2333444444334444444  5689999999764321         1


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      .   ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+.........+....+.. +
T Consensus        82 ~---~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~  155 (196)
T 3tkl_A           82 T---SSYYRGAHGIIVVYDVTDQE--SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-F  155 (196)
T ss_dssp             H---HHHHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-E
T ss_pred             H---HHHHhhCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-E
Confidence            1   12456789999999997532  2223344544443333346899999999999765433334455555555654 9


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|+++++++|.+.+..
T Consensus       156 ~~~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          156 LETSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.87  E-value=1.7e-22  Score=193.27  Aligned_cols=211  Identities=19%  Similarity=0.224  Sum_probs=131.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcce-----eecCCCC----------------------ceeeE------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTHE------------  177 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~-----~~~~~~~----------------------tt~~~------------  177 (424)
                      ...++|+++|.+|||||||+|+|++..+.     .++..|+                      +|.+.            
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            35679999999999999999999998764     2333343                      22210            


Q ss_pred             ------------EEEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEE-EEEeCCCCCCCchHHH
Q 014461          178 ------------VLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLM-VVFDVHRHLTSPDSRV  243 (424)
Q Consensus       178 ------------~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl-~VvD~~~~~~~~~~~~  243 (424)
                                  ..........++.+|||||+..... .............+..++..++.++ +|+|++......+  .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~  181 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--A  181 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--H
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH--H
Confidence                        0011112247899999999874321 0011100111222233445666555 7999976544433  2


Q ss_pred             HHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC--CCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCC
Q 014461          244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE  321 (424)
Q Consensus       244 ~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~  321 (424)
                      ..+++.+..   .+.|+++|+||+|+........+..+.....  .++.+++++||++|.|+++++++|.+..   +|.+
T Consensus       182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~---~~~~  255 (299)
T 2aka_B          182 LKIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER---KFFL  255 (299)
T ss_dssp             HHHHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH---HHHH
T ss_pred             HHHHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH---HHHh
Confidence            234444432   2478999999999986533222222210001  1334688999999999999999998743   3444


Q ss_pred             CCCCcchhhHH---HHHHHHHHHHHHhhcCccCCcce
Q 014461          322 DPLTMSEEVMK---NISLEVVRERLLDHVHQEIPYSI  355 (424)
Q Consensus       322 ~~~~~~~~~~~---~~~~e~ire~l~~~l~~eip~~~  355 (424)
                      +...+++...+   ....+.+|+.+++++.+++||..
T Consensus       256 ~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~  292 (299)
T 2aka_B          256 SHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR  292 (299)
T ss_dssp             HCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            44555555544   67889999999999999999964

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=8.2e-22  Score=198.77  Aligned_cols=166  Identities=19%  Similarity=0.262  Sum_probs=114.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .+|+++|.||||||||+|+|++.+.+.+++.+++|++...+.+.+.+..+.+|||||+.......   ....+...+...
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~---~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI---ISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGC---CCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccch---HHHHHHHHHHHH
Confidence            47999999999999999999999888789999999998888888888999999999987431100   011223445566


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..+|++++|+|++.+.+..+..+.++++..      +.|+++|+||+|+...  .......++.. .++.+++++||++
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~~-lg~~~~~~iSA~~  149 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELYS-LGFGEPIPVSAEH  149 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHGG-GSSCSCEECBTTT
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHHh-cCCCCEEEEeccC
Confidence            7899999999999887776666777777754      3789999999998532  11111133432 3554589999999


Q ss_pred             CcChHHHHHHHHHhccCC
Q 014461          300 GAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~~~  317 (424)
                      |.|+++|+++|.+.+++.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999888643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.86  E-value=1.1e-21  Score=192.70  Aligned_cols=171  Identities=21%  Similarity=0.313  Sum_probs=115.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ....+|+++|.+|||||||+|+|++... .++..+++|.......+...+..+.+|||||+........ ...  .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~--~~~~~  240 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISER-NEI--EKQAI  240 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTS-CHH--HHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhh-hHH--HHHHH
Confidence            4678999999999999999999999874 4667778887776666666778899999999875422111 111  11112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ......+|++++|+|+++...........++..+..... +.|+++|+||+|+.... ...+..+.+. ..+. ++++||
T Consensus       241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~-~~~~~~~~~~-~~~~-~~~~iS  316 (357)
T 2e87_A          241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE-NIKRLEKFVK-EKGL-NPIKIS  316 (357)
T ss_dssp             HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH-HHHHHHHHHH-HTTC-CCEECB
T ss_pred             HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH-HHHHHHHHHH-hcCC-CeEEEe
Confidence            223346899999999875432222333344443332111 47899999999998642 3322222222 2233 489999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|+|+++++++|.+.+.
T Consensus       317 A~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999999999999998873

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.86  E-value=8.8e-22  Score=173.34  Aligned_cols=166  Identities=19%  Similarity=0.196  Sum_probs=109.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|+++|.+|+|||||+|+|++..+..... ..+.+.......+......+.+|||||......         ..  
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~--   78 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LA--   78 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG---------GT--
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh---------hh--
Confidence            456899999999999999999999876543221 112222222211222345789999999754321         11  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ...+..+|++++|+|+++..  ....+..|+..+.....++.|+++|+||+|+...+....+....+....+. +++++
T Consensus        79 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  154 (181)
T 2efe_B           79 -PMYYRGAAAAIIVFDVTNQA--SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMET  154 (181)
T ss_dssp             -HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             -HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEE
Confidence             12356789999999997532  222344555544433334689999999999976433333344455544455 49999


Q ss_pred             ecCCCcChHHHHHHHHHhccCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ||++|.|+++++++|.+.+...
T Consensus       155 Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          155 SAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             CSSSCTTHHHHHHHHHHTCC--
T ss_pred             ECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999988543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.86  E-value=8.3e-22  Score=198.82  Aligned_cols=165  Identities=24%  Similarity=0.345  Sum_probs=113.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+++|+++|++|||||||+|+|++.....+++.+++|++.....+..++.++.+|||||+..+....    ....+.++
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~v----e~~gi~~~  297 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQV----EKIGVERS  297 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHH----HHHHHHHH
Confidence            35688999999999999999999998877788889999877655666788999999999986542111    12235667


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      +..+..+|++++|+|++++.+.....   ++..+.     ..|+++|+||+|+...... .    .+.......+++++|
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~~~---i~~~l~-----~~piivV~NK~Dl~~~~~~-~----~~~~~~~~~~~i~iS  364 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGDQE---IYEQVK-----HRPLILVMNKIDLVEKQLI-T----SLEYPENITQIVHTA  364 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHHHH---HHHHHT-----TSCEEEEEECTTSSCGGGS-T----TCCCCTTCCCEEEEB
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHHHH---HHHhcc-----CCcEEEEEECCCCCcchhh-H----HHHHhccCCcEEEEE
Confidence            77889999999999998765544433   344333     2689999999999864221 1    111222334699999


Q ss_pred             cCCCcChHHHHHHHHHhccCCC
Q 014461          297 GLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      |++|.|+++|+++|.+.+....
T Consensus       365 Aktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          365 AAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             TTTTBSHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999886544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.86  E-value=9.4e-22  Score=170.54  Aligned_cols=161  Identities=14%  Similarity=0.093  Sum_probs=104.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.++|+++|.+|||||||+|+|.+..+.  .....++..........+  ...+.+|||||...+..         ... 
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---------~~~-   69 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA---------MRD-   69 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT---------HHH-
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH---------HHH-
Confidence            4689999999999999999999987653  223333333333333333  44689999999765421         111 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ..+..+|++++|+|+++..+  ...+..++..+... ...+.|+++|+||+|+...+....+....+....+..++++
T Consensus        70 --~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  145 (167)
T 1c1y_A           70 --LYMKNGQGFALVYSITAQST--FNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE  145 (167)
T ss_dssp             --HHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred             --HHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence              23456899999999975321  11222233322211 12358999999999997543322333444444443346999


Q ss_pred             EecCCCcChHHHHHHHHHhc
Q 014461          295 TSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +||++|.|+++++++|.+.+
T Consensus       146 ~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          146 SSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=6.5e-22  Score=171.95  Aligned_cols=163  Identities=19%  Similarity=0.190  Sum_probs=106.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      +.++|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||.....         ...   
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~---   69 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---------SLA---   69 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---------GGH---
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh---------hhh---
Confidence            35789999999999999999999876542 12222222222222222233478999999975431         111   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC---hhhHHHHHHHHhcCCCCCeEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...   ..........+....+. +++
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~  146 (170)
T 1ek0_A           70 PXYYRNAQAALVVYDVTKPQ--SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFF  146 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEE
T ss_pred             hhhhccCcEEEEEEecCChH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEE
Confidence            23457789999999997532  2233444555443333346899999999999653   22223333444433344 499


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++||++|.|+++++++|.+.+.
T Consensus       147 ~~Sa~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          147 ETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             ECCTTTCTTHHHHHHHHHTTSC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.86  E-value=2.8e-22  Score=187.65  Aligned_cols=163  Identities=18%  Similarity=0.244  Sum_probs=113.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .+|+++|.+|||||||+|+|+|... .+++.+++|.+...+.+...+..+.+|||||+...............+.+.+..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            4799999999999999999999874 478899999988888888888899999999997653210000112223333333


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      ...+|++++|+|+++  ......+..++.+.      +.|+++|+||+|+..... .......+....+. +++++||++
T Consensus        81 ~~~~d~vi~VvDas~--~~~~~~l~~~l~~~------~~pvilv~NK~Dl~~~~~-~~~~~~~l~~~lg~-~vi~~SA~~  150 (256)
T 3iby_A           81 DLEYDCIINVIDACH--LERHLYLTSQLFEL------GKPVVVALNMMDIAEHRG-ISIDTEKLESLLGC-SVIPIQAHK  150 (256)
T ss_dssp             HSCCSEEEEEEEGGG--HHHHHHHHHHHTTS------CSCEEEEEECHHHHHHTT-CEECHHHHHHHHCS-CEEECBGGG
T ss_pred             hCCCCEEEEEeeCCC--chhHHHHHHHHHHc------CCCEEEEEEChhcCCcCC-cHHHHHHHHHHcCC-CEEEEECCC
Confidence            378999999999975  11122233333322      478999999999864321 10011223333354 499999999


Q ss_pred             CcChHHHHHHHHHh
Q 014461          300 GAGLKALTQYLMEQ  313 (424)
Q Consensus       300 g~gi~~L~~~i~~~  313 (424)
                      |.|+++++++|.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999987

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.86  E-value=2e-21  Score=171.93  Aligned_cols=163  Identities=16%  Similarity=0.165  Sum_probs=109.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++  ..+.+|||||....            ..
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------~~   74 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF------------RS   74 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG------------HH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH------------HH
Confidence            456899999999999999999999876642 2223333333333334444  57899999997532            11


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+.........+....+. ++++
T Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  151 (186)
T 2bme_A           75 VTRSYYRGAAGALLVYDITSRE--TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLE  151 (186)
T ss_dssp             HHHTTSTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             HHHHHHhcCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence            2334578899999999997532  222333444443332234689999999999964322222233444444454 5999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       152 ~Sa~~~~gi~~l~~~l~~~~~  172 (186)
T 2bme_A          152 TSALTGENVEEAFVQCARKIL  172 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=173.24  Aligned_cols=165  Identities=16%  Similarity=0.187  Sum_probs=105.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ....++|+++|.+|||||||+|+|++..+.... .+..+.+.....+..++  ..+.+|||||...+.         .  
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~--   90 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC-KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---------S--   90 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH---------H--
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC-CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH---------H--
Confidence            345689999999999999999999987764322 22222222223333333  578999999975321         1  


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                       .....+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+...+....+..+.+........++
T Consensus        91 -~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  167 (192)
T 2il1_A           91 -ITSAYYRSAKGIILVYDITKKET--FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC  167 (192)
T ss_dssp             -HHHHHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE
T ss_pred             -HHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE
Confidence             12234567899999999975322  222333443333322345899999999999754333333445555553334699


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++||++|.|+++++++|.+.+.
T Consensus       168 ~~SA~~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          168 EASAKDNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988763

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.86  E-value=3e-21  Score=170.22  Aligned_cols=165  Identities=14%  Similarity=0.065  Sum_probs=111.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|++..+.  .....++.......+..++  ..+.+|||||...+....          
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   71 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP----------   71 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC----------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH----------
Confidence            35689999999999999999999966642  3444444444444444555  467899999987553211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|+++.  .....+..|+..+.. ....+.|+++|+||+|+...+....+....+....+. +++
T Consensus        72 --~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  146 (181)
T 3t5g_A           72 --QTYSIDINGYILVYSVTSI--KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFL  146 (181)
T ss_dssp             --GGGTTTCSEEEEEEETTCH--HHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEE
T ss_pred             --HHHHhcCCEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEE
Confidence              1235678999999999752  222233444443322 1223589999999999976544444445555555565 499


Q ss_pred             EEecCCCcChHHHHHHHHHhccCCC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ++||++|.|+++++++|.+.+....
T Consensus       147 ~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          147 ESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999886543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.86  E-value=9.8e-22  Score=170.12  Aligned_cols=161  Identities=15%  Similarity=0.096  Sum_probs=104.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.++|+++|.+|||||||+|+|.+..+..  ....++.......+..++  ..+.+|||||.....         ...  
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~--   68 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------SMR--   68 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------HHH--
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH---------HHH--
Confidence            46899999999999999999999876542  222333322233333343  458999999975431         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ...+..+|++++|+|+++..  ....+..++..+... ...+.|+++|+||+|+...++........+....+. ++++
T Consensus        69 -~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  144 (167)
T 1kao_A           69 -DLYIKNGQGFILVYSLVNQQ--SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFME  144 (167)
T ss_dssp             -HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEE
T ss_pred             -HHHhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEE
Confidence             12356789999999997532  112233333332221 123589999999999865333223333444443454 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       145 ~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          145 TSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHh
Confidence            999999999999999988763

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=174.88  Aligned_cols=165  Identities=19%  Similarity=0.207  Sum_probs=110.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ....++|+++|.+|||||||+|+|++..+....... +.+.......+...+..+.+|||||...+..         .. 
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~-   91 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA---------IT-   91 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT---------TH-
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh---------hh-
Confidence            345689999999999999999999987765332222 2222222222333446789999999865421         11 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+.........+....+. .+++
T Consensus        92 --~~~~~~~d~vi~v~D~~~~~--s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  166 (193)
T 2oil_A           92 --SAYYRGAVGALLVFDLTKHQ--TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFLE  166 (193)
T ss_dssp             --HHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             --HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEE
Confidence              12356789999999997532  222344555555443334689999999999975332223334445444455 5999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       167 ~Sa~~~~gi~~l~~~l~~~i~  187 (193)
T 2oil_A          167 TSALDSTNVELAFETVLKEIF  187 (193)
T ss_dssp             ECTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.86  E-value=2.7e-21  Score=173.88  Aligned_cols=163  Identities=14%  Similarity=0.120  Sum_probs=108.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..++|+++|.+|||||||+|+|++..+... ....+++..............+.+|||||...+            ....
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------~~~~   74 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY------------RTIT   74 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------------HHHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh------------cchH
Confidence            468999999999999999999998775422 122222222222222223457899999997542            1123


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....++ +++++|
T Consensus        75 ~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
T 1zbd_A           75 TAYYRGAMGFILMYDITNEE--SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEAS  151 (203)
T ss_dssp             HTTGGGCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECB
T ss_pred             HHhhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEE
Confidence            34567899999999997532  223344455544433334589999999999976433323334444444455 599999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.|+++++++|.+.+.
T Consensus       152 a~~~~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          152 AKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             TTTTBSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.86  E-value=1.7e-22  Score=200.35  Aligned_cols=258  Identities=16%  Similarity=0.195  Sum_probs=131.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec---------------------C---CccEEEEeCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------------------A---DTQICIFDTP  195 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~---~~~i~l~Dtp  195 (424)
                      ++|+++|.||||||||+|+|++.+ +.+++++++|+....+....                     .   ..++.|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            479999999999999999999988 66789999998776665321                     1   2479999999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC---------CchH-------------------------
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT---------SPDS-------------------------  241 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~---------~~~~-------------------------  241 (424)
                      |+......     ........+..++.+|++++|+|+++...         ++..                         
T Consensus        80 G~~~~a~~-----~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~  154 (397)
T 1wxq_A           80 GLVPGAHE-----GRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFA  154 (397)
T ss_dssp             --------------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             Ccccchhh-----hhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            98643210     01122333456789999999999976411         0000                         


Q ss_pred             --------------------------HHHHHHHHhccCC------------------CCCCcEEEEEecCCCCCChhhHH
Q 014461          242 --------------------------RVIRLIERMGKQA------------------PPKQKRVLCMNKVDLVTKKKDLL  277 (424)
Q Consensus       242 --------------------------~~~~~l~~~~~~~------------------~~~~p~ilV~NK~Dl~~~~~~~~  277 (424)
                                                .+...+..+....                  ...+|+++|+||+|+. ....+.
T Consensus       155 k~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~  233 (397)
T 1wxq_A          155 KRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIK  233 (397)
T ss_dssp             STTTSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHH
T ss_pred             HHHhhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHH
Confidence                                      0111111111000                  0137999999999987 333344


Q ss_pred             HHHHHHhcCCCCCeEEEEecCCCcChHHHHH-HHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceE
Q 014461          278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQ-YLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIE  356 (424)
Q Consensus       278 ~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~  356 (424)
                      ...+.+... + .+++++||+.+.|+++|++ .|.++++.+++.|+...++++..+  ++|.+||++++.+. +  ..+.
T Consensus       234 ~l~~~~~~~-~-~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g-~--~g~~  306 (397)
T 1wxq_A          234 RLVREEEKR-G-YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG-S--TGVQ  306 (397)
T ss_dssp             HHHHHHHHT-T-CEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS-S--CSHH
T ss_pred             HHHHHHhhc-C-CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC-c--chHH
Confidence            444444322 3 3599999999999999888 888999999999988888876555  56889988887765 2  1111


Q ss_pred             EEEEEEEeccCCeEEEEEE----EEeeCCC--cccEEeccCCchHHHHHHHHHHHHHHhcC
Q 014461          357 HRLIDWKDLRDGSLRIEQH----LITNKLS--QRKILVGKNGSKIGRIGVEANEELRSIFK  411 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~i~~~----i~~~~~s--~k~ivig~~g~~i~~i~~~~~~~l~~~~~  411 (424)
                      ..+.+..+..=+.+++...    -+.....  -...++-++|+++.+++..+|.++++-|.
T Consensus       307 ~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~  367 (397)
T 1wxq_A          307 EVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFL  367 (397)
T ss_dssp             HHHHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEE
T ss_pred             HHHHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhh
Confidence            1110000000012222220    0000111  11344448899999999999999999875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.86  E-value=1.6e-21  Score=171.13  Aligned_cols=164  Identities=17%  Similarity=0.162  Sum_probs=106.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeec-CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||.....         .   .
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~---~   80 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---------A---V   80 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---------H---H
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---------h---h
Confidence            45789999999999999999999987754211 111222222221122233578999999975431         1   1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus        81 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  157 (179)
T 1z0f_A           81 TRSYYRGAAGALMVYDITRRS--TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEA  157 (179)
T ss_dssp             HHHHHHTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             HHHHhccCCEEEEEEeCcCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEE
Confidence            223456789999999997532  222333444444333334689999999999965332222334444444454 59999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       158 Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          158 SAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             CTTTCTTHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.86  E-value=1.5e-21  Score=169.14  Aligned_cols=161  Identities=17%  Similarity=0.075  Sum_probs=103.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.++|+++|.+|+|||||+|+|.+..+.  .....++.......+..++  ..+.+|||||...+.         ...  
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~--   69 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---------AIR--   69 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---------HHH--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH---------HHH--
Confidence            4689999999999999999999987753  3333344333333333333  478999999975431         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ...+..+|++++|+|+++..  ....+..++..+... ...+.|+++|+||+|+...+....+....+....+. ++++
T Consensus        70 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  145 (168)
T 1u8z_A           70 -DNYFRSGEGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVE  145 (168)
T ss_dssp             -HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             -HHHhhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEE
Confidence             22356789999999997532  122333343333221 112579999999999975322222233333333344 5999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       146 ~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          146 TSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.86  E-value=1.6e-21  Score=169.73  Aligned_cols=162  Identities=17%  Similarity=0.183  Sum_probs=104.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++  ..+.+|||||......            .
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------~   71 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA------------L   71 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh------------h
Confidence            46899999999999999999999776532 1222222222222333333  4688999999754321            1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (170)
T 1z08_A           72 GPIYYRDSNGAILVYDITDED--SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHT  148 (170)
T ss_dssp             -CCSSTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEE
T ss_pred             HHHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEe
Confidence            123467889999999997532  223334444443322223578999999999975332222334444444454 59999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       149 Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          149 SAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.86  E-value=3e-21  Score=173.90  Aligned_cols=166  Identities=14%  Similarity=0.114  Sum_probs=108.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ....++|+++|.+|||||||+|+|.+..+... ..+..+.+.....+..++  ..+.+|||||...+.         .  
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~--   93 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSER-QGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR---------T--   93 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH---------H--
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCC-CCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH---------H--
Confidence            34568999999999999999999998765321 111111222223333444  578999999975431         1  


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                       .....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....+...++
T Consensus        94 -~~~~~~~~~d~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  170 (201)
T 2hup_A           94 -ITQSYYRSANGAILAYDITKRS--SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI  170 (201)
T ss_dssp             -HHHHHHTTCSEEEEEEETTBHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred             -HHHHHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence             1223467889999999997532  1223334554443333346899999999999753222233344555555664699


Q ss_pred             EEecCCCcChHHHHHHHHHhccC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++||++|.|+++++++|.+.+..
T Consensus       171 ~~SA~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          171 ETSAKDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.86  E-value=9.2e-22  Score=171.43  Aligned_cols=162  Identities=19%  Similarity=0.283  Sum_probs=104.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..+|+++|++|||||||+|+|.+.... ++..+++|.....+.+..++..+.+|||||+..+....    ....+...+
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~   76 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY   76 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHH
Confidence            3578999999999999999999987653 45566666665555566677889999999987653211    111122222


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .....+|++++|+|+++.     .....++..+..   .+.|+++|+||+|+....... ...+.+....+. +++++||
T Consensus        77 ~~~~~~~~~i~v~D~~~~-----~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~~~~SA  146 (165)
T 2wji_A           77 IINEKPDLVVNIVDATAL-----ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGV-KVVPLSA  146 (165)
T ss_dssp             HHHHCCSEEEEEEETTCH-----HHHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTS-CEEECBG
T ss_pred             HhcCCCCEEEEEecCCch-----hHhHHHHHHHHh---cCCCEEEEEEchHhccccChh-hHHHHHHHHhCC-CEEEEEc
Confidence            222368999999999641     122334444332   147899999999985321100 012223322344 4999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.|+++++++|.+.+
T Consensus       147 ~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          147 AKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGTBSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998876

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.86  E-value=1e-21  Score=189.35  Aligned_cols=208  Identities=14%  Similarity=0.201  Sum_probs=128.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc-----eeecCCC---Cceee--------------------------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT---NTTTH--------------------------------  176 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~-----~~~~~~~---~tt~~--------------------------------  176 (424)
                      ...++|+|+|.+|||||||+|+|+|..+     ..++..+   .+++.                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            3567899999999999999999999876     3333444   22221                                


Q ss_pred             ------EE-------------EEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEEEEEeC-CCC
Q 014461          177 ------EV-------------LGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDV-HRH  235 (424)
Q Consensus       177 ------~~-------------~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~-~~~  235 (424)
                            ..             ..+....+.++.+|||||+..... ..+..........+...+..+|++++|+|+ +.+
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                  00             001333557899999999864210 011111123344555667889999999997 444


Q ss_pred             CCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC-CeEEEE---ecCC---CcChHHHH
Q 014461          236 LTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY-ERIFMT---SGLK---GAGLKALT  307 (424)
Q Consensus       236 ~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~i---SA~~---g~gi~~L~  307 (424)
                      ....+. .+..++..      .+.|+++|+||+|+........+.++.  ....+ ..++++   ||.+   |.|+++++
T Consensus       182 ~~~~~~~~i~~~~~~------~~~~~i~v~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~  253 (315)
T 1jwy_B          182 LANSDALQLAKEVDP------EGKRTIGVITKLDLMDKGTDAMEVLTG--RVIPLTLGFIGVINRSQEDIIAKKSIRESL  253 (315)
T ss_dssp             STTCSHHHHHHHHCS------SCSSEEEEEECTTSSCSSCCCHHHHTT--SSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred             hhhhHHHHHHHHhCC------CCCcEEEEEcCcccCCcchHHHHHHhC--CCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence            433332 34443332      247899999999998653322332221  11111 234555   5555   78999999


Q ss_pred             HHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcce
Q 014461          308 QYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSI  355 (424)
Q Consensus       308 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~  355 (424)
                      +.+.+.++.+++ |+ ...++....++.. .+|+.+++++.+++||..
T Consensus       254 ~~~~~~~~~~~~-~~-~~~~~~~~~~l~~-~lre~l~~~~~~elP~~~  298 (315)
T 1jwy_B          254 KSEILYFKNHPI-YK-SIANRSGTAYLSK-TLNKLLMFHIRDTLPDLK  298 (315)
T ss_dssp             HHHHHHHHTCTT-GG-GSGGGCSHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCc-cc-cchhccCHHHHHH-HHHHHHHHHHHHHhHHHH
Confidence            999999988776 44 3344444555555 599999999999999964

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.86  E-value=3.8e-21  Score=180.21  Aligned_cols=163  Identities=23%  Similarity=0.315  Sum_probs=115.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.++|+++|.+|||||||+|+|++.... +++.+++|.....+.+...+..+.+|||||+........    ...+.+.+
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----~e~v~~~~   78 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI----DEKIARDY   78 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH----HHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH----HHHHHHHH
Confidence            4689999999999999999999998765 788899998888887887888999999999876533211    11222222


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .....+|++++|+|+++.    . ....++..+...   +.|+++|+||+|+...+... .....+....++ +++++||
T Consensus        79 ~~~~~~d~ii~V~D~t~~----~-~~~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~-~vi~~SA  148 (258)
T 3a1s_A           79 LLKGDADLVILVADSVNP----E-QSLYLLLEILEM---EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGI-PVVFTSS  148 (258)
T ss_dssp             HHHSCCSEEEEEEETTSC----H-HHHHHHHHHHTT---TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCS-CEEECCT
T ss_pred             HhhcCCCEEEEEeCCCch----h-hHHHHHHHHHhc---CCCEEEEEECcCCCCccchH-HHHHHHHHHcCC-CEEEEEe
Confidence            222678999999999752    1 122233333221   47899999999985421110 012233333355 4999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.|+++++++|.+.+.
T Consensus       149 ~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          149 VTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             eCCcCHHHHHHHHHHHhh
Confidence            999999999999998775

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.86  E-value=1e-21  Score=173.49  Aligned_cols=162  Identities=14%  Similarity=0.129  Sum_probs=86.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+..++  ..+.+|||||...+...            
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------   73 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------------   73 (183)
T ss_dssp             EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh------------
Confidence            46899999999999999999999766531 2222333333333344444  67899999997643211            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|++++.  ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus        74 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~  150 (183)
T 2fu5_C           74 TTAYYRGAMGIMLVYDITNEK--SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMET  150 (183)
T ss_dssp             CCTTTTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred             HHHHHhcCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEEE
Confidence            123467889999999997532  223444555554433334689999999999976433223333444444454 49999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       151 Sa~~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          151 SAKANINVENAFFTLARDIK  170 (183)
T ss_dssp             CC---CCHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3.2e-21  Score=173.92  Aligned_cols=163  Identities=16%  Similarity=0.173  Sum_probs=108.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++  ..+.+|||||...+            ..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~------------~~   90 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF------------RS   90 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------------HH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH------------HH
Confidence            356899999999999999999999876542 2222222333333344444  47899999997532            11


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      .....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+..+.+....+. .+++
T Consensus        91 ~~~~~~~~~d~~i~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  167 (201)
T 2ew1_A           91 ITQSYYRSANALILTYDITCEE--SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLE  167 (201)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEE
T ss_pred             HHHHHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEE
Confidence            2335578899999999997532  222233444444332234589999999999975322222333444433344 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          168 TSAKESDNVEKLFLDLACRLI  188 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.86  E-value=3.7e-21  Score=175.13  Aligned_cols=166  Identities=17%  Similarity=0.230  Sum_probs=109.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ...++|+++|.+|||||||+|+|++..+... ....+++..... .....+  ..+.+|||||........         
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~---------   78 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT-FLDDQGNVIKFNVWDTAGQEKKAVLK---------   78 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE-EEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE-EEeCCCcEEEEEEEecCCchhhchHH---------
Confidence            4578999999999999999999997765422 222233322222 222222  568999999986543211         


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      .   ..+..+|++++|+|++++.+.  ..+..|+..+......+.|+++|+||+|+.............+....+. +++
T Consensus        79 ~---~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  152 (218)
T 4djt_A           79 D---VYYIGASGAILFFDVTSRITC--QNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY-EYF  152 (218)
T ss_dssp             H---HHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC-EEE
T ss_pred             H---HHhhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-cEE
Confidence            1   224668999999999754322  2233444443322223478999999999986544444555666666565 499


Q ss_pred             EEecCCCcChHHHHHHHHHhccCCC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ++||++|.|+++++++|.+.+....
T Consensus       153 ~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          153 EISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             EEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999999887654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.86  E-value=2.4e-21  Score=172.40  Aligned_cols=164  Identities=13%  Similarity=0.122  Sum_probs=107.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|+++|.+|||||||+|+|++..+... ....+++..............+.+|||||...+...            
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------   87 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI------------   87 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh------------
Confidence            3468999999999999999999998775422 222222222222222233457899999997654221            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+..+.+....++ +++++
T Consensus        88 ~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  164 (189)
T 2gf9_A           88 TTAYYRGAMGFLLMYDIANQE--SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEA  164 (189)
T ss_dssp             GGGGGTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred             HHHhccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEE
Confidence            123467789999999997532  122233444444333234589999999999975432222334444444455 59999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       165 Sa~~g~gi~~l~~~l~~~i~  184 (189)
T 2gf9_A          165 SAKENINVKQVFERLVDVIC  184 (189)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.85  E-value=7.4e-21  Score=171.57  Aligned_cols=163  Identities=17%  Similarity=0.159  Sum_probs=110.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|.+..+.. ...+..+.......+..++  ..+.+|||||...+....          
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   74 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT----------   74 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH----------
Confidence            346899999999999999999999876542 2223333232223333343  478999999976543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus        75 --~~~~~~~d~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  149 (206)
T 2bcg_Y           75 --SSYYRGSHGIIIVYDVTDQE--SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLE  149 (206)
T ss_dssp             --GGGGTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEE
T ss_pred             --HHhccCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEE
Confidence              13467789999999997532  223344455544433334689999999999976433333334445544555 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       150 ~Sa~~g~gi~~l~~~l~~~i~  170 (206)
T 2bcg_Y          150 TSALDSTNVEDAFLTMARQIK  170 (206)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999998774

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.85  E-value=2.7e-21  Score=195.94  Aligned_cols=162  Identities=22%  Similarity=0.376  Sum_probs=122.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcc-cCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~-~~~~~~~~~~~~~~~~~~  216 (424)
                      .+++|+++|.||||||||+|+|++...+.+++.++||++.....+..++.++.+|||||+. .+.....    ...+..+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve----~~gi~~~  317 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE----RLGIERT  317 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC----CCCHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH----HHHHHHH
Confidence            4589999999999999999999998877789999999988777778888999999999987 5432111    1235566


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      +..+..+|++|+|+|++++.+..+..+   ++.+.     +.|+++|+||+|+... ....+ ...+.. .+ .++++||
T Consensus       318 ~~~~~~aD~vl~VvD~s~~~s~~~~~i---l~~l~-----~~piivV~NK~DL~~~-~~~~~-~~~~~~-~~-~~~i~iS  385 (482)
T 1xzp_A          318 LQEIEKADIVLFVLDASSPLDEEDRKI---LERIK-----NKRYLVVINKVDVVEK-INEEE-IKNKLG-TD-RHMVKIS  385 (482)
T ss_dssp             HHHHHHCSEEEEEEETTSCCCHHHHHH---HHHHT-----TSSEEEEEEECSSCCC-CCHHH-HHHHHT-CS-TTEEEEE
T ss_pred             HHHhhcccEEEEEecCCCCCCHHHHHH---HHHhc-----CCCEEEEEECcccccc-cCHHH-HHHHhc-CC-CcEEEEE
Confidence            777889999999999987654433333   33221     4789999999999753 12222 222322 12 2499999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.|+++|+++|.+.+.
T Consensus       386 Aktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          386 ALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             GGGTCCHHHHHHHHHHHTH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.2e-20  Score=167.47  Aligned_cols=166  Identities=19%  Similarity=0.180  Sum_probs=106.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+|+|++..+....+..+.+.    ..+..++..+.+|||||......         ...  
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~---------~~~--   78 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRS---------SWN--   78 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC----CG---------GGH--
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCHhHHH---------HHH--
Confidence            457999999999999999999999877654443333322    22345678899999999864321         111  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~  291 (424)
                       ..+..+|++++|+|+++..  .......++..+... ...+.|+++|+||+|+.... ...+..+.+..    ..+. .
T Consensus        79 -~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~  153 (187)
T 1zj6_A           79 -TYYTNTEFVIVVVDSTDRE--RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW-H  153 (187)
T ss_dssp             -HHHTTCCEEEEEEETTCTT--THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCE-E
T ss_pred             -HHhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhhcCCCc-E
Confidence             2356789999999997642  223344455444322 12358999999999997642 22222233221    1222 5


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                      ++++||++|.|+++++++|.+.+...+...+
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~  184 (187)
T 1zj6_A          154 IQACCALTGEGLCQGLEWMMSRLKIRLEHHH  184 (187)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHCC------
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999876654433

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.85  E-value=6.4e-21  Score=167.19  Aligned_cols=163  Identities=16%  Similarity=0.125  Sum_probs=105.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++  ..+.+|||||...+            ..
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------~~   71 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF------------RS   71 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG------------HH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh------------hh
Confidence            356899999999999999999999876542 2222222222233334444  47899999997532            11


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-CCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY  289 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~  289 (424)
                      .....+..+|++++|+|+++..+  ...+..|+..+..    ....+.|+++|+||+|+... ....+....+.. ..+.
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~  148 (177)
T 1wms_A           72 LRTPFYRGSDCCLLTFSVDDSQS--FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-QVSTEEAQAWCRDNGDY  148 (177)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-SSCHHHHHHHHHHTTCC
T ss_pred             hHHHHHhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc-ccCHHHHHHHHHhcCCc
Confidence            22345678999999999975321  1222333333221    11245799999999999743 222333444444 3333


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                       +++++||++|.|+++++++|.+.+..
T Consensus       149 -~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          149 -PYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             -CEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             59999999999999999999988754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.85  E-value=2.7e-21  Score=169.90  Aligned_cols=164  Identities=16%  Similarity=0.143  Sum_probs=110.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.++|+++|.+|||||||+|+|++..+.  .....++.......+..++  ..+.+|||||...+..         ..
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~   74 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA---------MR   74 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC---------CH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH---------HH
Confidence            346789999999999999999999987553  4455555554444444454  4688999999765421         11


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      .   ..+..+|++++|+|+++..  ....+..|+..+ ......+.|+++|+||+|+...+.........+....+. .+
T Consensus        75 ~---~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~  148 (181)
T 2fn4_A           75 E---QYMRAGHGFLLVFAINDRQ--SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AY  148 (181)
T ss_dssp             H---HHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EE
T ss_pred             H---HHHhhCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eE
Confidence            1   2245689999999997521  222333444443 111223579999999999976433223334445444455 59


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|+++++++|.+.+..
T Consensus       149 ~~~Sa~~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          149 FEASAKLRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987743

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.85  E-value=3.9e-21  Score=167.16  Aligned_cols=161  Identities=16%  Similarity=0.157  Sum_probs=104.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++  ..+.+|||||.......         .   
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---------~---   69 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI---------T---   69 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC---------C---
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh---------H---
Confidence            5789999999999999999999876532 2222333333333344443  46899999997654321         1   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+... ....+....+....+. +++++|
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~S  145 (170)
T 1g16_A           70 TAYYRGAMGIILVYDITDERT--FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVTADQGEALAKELGI-PFIESS  145 (170)
T ss_dssp             HHHHTTEEEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-CSCHHHHHHHHHHHTC-CEEECB
T ss_pred             HHHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC-ccCHHHHHHHHHHcCC-eEEEEE
Confidence            123567899999999975321  222334444433322345899999999999543 2222333444443455 499999


Q ss_pred             cCCCcChHHHHHHHHHhccC
Q 014461          297 GLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~  316 (424)
                      |++|.|+++++++|.+.+.+
T Consensus       146 a~~~~gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          146 AKNDDNVNEIFFTLAKLIQE  165 (170)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999987743

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.85  E-value=1.3e-20  Score=169.43  Aligned_cols=159  Identities=16%  Similarity=0.162  Sum_probs=101.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|.+|||||||+|+|.+..+....+..+.+    ...+..++.++.+|||||...+...            .
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~~~~------------~   86 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQARRV------------W   86 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----CCG------------G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhhHHH------------H
Confidence            45689999999999999999999988765433333333    2334566789999999997654210            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---------
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---------  286 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---------  286 (424)
                      ...+..+|++++|+|+++..  ....+..++..+... ...+.|+++|+||+|+... ....+..+.+...         
T Consensus        87 ~~~~~~~d~~i~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~  163 (198)
T 1f6b_A           87 KNYLPAINGIVFLVDCADHE--RLLESKEELDSLMTDETIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSV  163 (198)
T ss_dssp             GGGGGGCSEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCC
T ss_pred             HHHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-CCHHHHHHHhCccccccccccc
Confidence            13456889999999997532  223344555544321 1235899999999999753 1222222222211         


Q ss_pred             ------CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          287 ------PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       287 ------~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                            .....+++|||++|.|+++++++|.+.+
T Consensus       164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                  1223699999999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.85  E-value=7.1e-21  Score=167.05  Aligned_cols=159  Identities=17%  Similarity=0.223  Sum_probs=108.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..+|+++|.+|||||||+|+|++..+.. ...++++.......+..++..+.+|||||...+....            
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------   72 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR------------   72 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH------------
Confidence            467899999999999999999999877642 3333444333333355677889999999986553211            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC------CC-C
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL------PG-Y  289 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~------~~-~  289 (424)
                      ...+..+|++++|+|++++.....   .+.+.....   .+.|+++|+||+|+....  .......+...      .+ .
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~---~~~l~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~  144 (178)
T 2lkc_A           73 ARGAQVTDIVILVVAADDGVMPQT---VEAINHAKA---ANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGD  144 (178)
T ss_dssp             CSSCCCCCEEEEEEETTCCCCHHH---HHHHHHHGG---GSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSS
T ss_pred             HHHHhhCCEEEEEEECCCCCcHHH---HHHHHHHHh---CCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCc
Confidence            134577899999999976543322   233443332   247899999999998632  12222222221      11 1


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          145 TIFCKLSAKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence            369999999999999999999987643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.85  E-value=2.7e-21  Score=170.01  Aligned_cols=159  Identities=13%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|++..+....+   |+.......+..++  ..+.+|||||...+              
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------------   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEK---TESEQYKKEMLVDGQTHLVLIREEAGAPDA--------------   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSS---CSSSEEEEEEEETTEEEEEEEEECSSSCCH--------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCC---CcceeEEEEEEECCEEEEEEEEECCCCchh--------------
Confidence            456899999999999999999999877653222   22222222233333  46889999997531              


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCC--ChhhHHHHHHHHhcCCCCCe
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~  291 (424)
                         ..+..+|++++|+|++++.+... ..+.+++........++.|+++|+||+|+..  .+....+....+....+..+
T Consensus        68 ---~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~  144 (178)
T 2iwr_A           68 ---KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS  144 (178)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE
T ss_pred             ---HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe
Confidence               23456899999999975322111 1233355555443334689999999999942  22222233333433322235


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++++||++|.|+++++++|.+.+.
T Consensus       145 ~~~~Sa~~~~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          145 YYETXATYGLNVDRVFQEVAQKVV  168 (178)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCHHHHHHHHHHHHH
Confidence            999999999999999999988763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.85  E-value=2.1e-21  Score=170.33  Aligned_cols=163  Identities=18%  Similarity=0.179  Sum_probs=106.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|++..+.. ...+.++.+.....+..++  ..+.+|||||...+..         ...
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~~   81 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIP   81 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---------GSH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH---------HHH
Confidence            356899999999999999999999776542 2233333333333344444  4789999999754321         111


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                         ..+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+.........+....+. ++++
T Consensus        82 ---~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  155 (179)
T 2y8e_A           82 ---SYIRDSTVAVVVYDITNTN--SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIE  155 (179)
T ss_dssp             ---HHHHTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             ---HHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEE
Confidence               2345789999999997532  122233444443322223589999999999975332222223333333344 5999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       156 ~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          156 TSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             EBTTTTBSHHHHHHHHHHTCC
T ss_pred             EeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998774

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1e-21  Score=175.10  Aligned_cols=164  Identities=12%  Similarity=0.113  Sum_probs=110.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|+++|.+|||||||+|+|++..+... ....+++...........+..+.+|||||...+            ...
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------~~~   88 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY------------RTI   88 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC------------HHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH------------HHH
Confidence            4568999999999999999999997654321 112223333333333445667999999996532            111


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+.......+.+....+. +++++
T Consensus        89 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  165 (191)
T 3dz8_A           89 TTAYYRGAMGFILMYDITNEE--SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEA  165 (191)
T ss_dssp             HHHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred             HHHHHccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEE
Confidence            223467889999999997532  222334455544433334689999999999965433333344445444455 59999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       166 Sa~~~~gi~~l~~~l~~~i~  185 (191)
T 3dz8_A          166 SAKENISVRQAFERLVDAIC  185 (191)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.85  E-value=5.1e-21  Score=169.53  Aligned_cols=160  Identities=17%  Similarity=0.164  Sum_probs=106.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.++|+++|.+|||||||+|+|++..+.  ....+++..........++.  .+.+|||||...+..         ... 
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~-   70 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---------MRD-   70 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT---------THH-
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH---------HHH-
Confidence            4689999999999999999999987753  34444554444444444444  477899999765421         111 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ..+..+|++++|+|+++..  ....+..++..+.. ....+.|+++|+||+|+... ....+....+....+.. +++
T Consensus        71 --~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~  144 (189)
T 4dsu_A           71 --QYMRTGEGFLCVFAINNTK--SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR-TVDTKQAQDLARSYGIP-FIE  144 (189)
T ss_dssp             --HHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC-SSCHHHHHHHHHHHTCC-EEE
T ss_pred             --HHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc-ccCHHHHHHHHHHcCCe-EEE
Confidence              2345689999999997531  22233344433322 12235899999999999754 22333344444444554 999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       145 ~Sa~~g~gi~~l~~~l~~~~~  165 (189)
T 4dsu_A          145 TSAKTRQGVDDAFYTLVREIR  165 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999998774

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=4.1e-21  Score=167.19  Aligned_cols=163  Identities=17%  Similarity=0.113  Sum_probs=101.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.++|+++|.+|||||||+|+|++..+..  ....+...........  ....+.+|||||...+.         ...  
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~--   68 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---------AMQ--   68 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---------HHH--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---------HHH--
Confidence            35799999999999999999999876531  1111111111222222  23468999999976431         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ...+..+|++++|+|+++..+.. ...+...+.+... ..++.|+++|+||+|+...+.........+....+. ++++
T Consensus        69 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  145 (172)
T 2erx_A           69 -RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFME  145 (172)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             -HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEE
Confidence             22345689999999997532111 1123333443321 113579999999999865422222223333333344 5999


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +||++|.|+++++++|.+.+..
T Consensus       146 ~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          146 TSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCCS
T ss_pred             ecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999987743

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.85  E-value=4.5e-21  Score=180.83  Aligned_cols=162  Identities=19%  Similarity=0.294  Sum_probs=111.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .++|+++|.||||||||+|+|++... .+++.+++|.....+.+.. +..+.+|||||+.......    ....+...+-
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~----~~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS----PEAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS----HHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC----hHHHHHHHHH
Confidence            47899999999999999999998764 3788899998877776666 7889999999987653211    1112222222


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      ....+|++++|+|+++.     .....+...+..   .+.|+++|+||+|+....... .....+....+.+ ++++||+
T Consensus        77 ~~~~~d~vi~V~D~t~~-----e~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-vi~~SA~  146 (272)
T 3b1v_A           77 LSQRADSILNVVDATNL-----ERNLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVP-VVATSAL  146 (272)
T ss_dssp             HTTCCSEEEEEEEGGGH-----HHHHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEECBTT
T ss_pred             hcCCCCEEEEEecCCch-----HhHHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCC-EEEEEcc
Confidence            22468999999999641     112223332221   147899999999985421100 1122233333444 9999999


Q ss_pred             CCcChHHHHHHHHHhccC
Q 014461          299 KGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~~  316 (424)
                      +|.|+++++++|.+.+..
T Consensus       147 ~g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          147 KQTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             TTBSHHHHHHHHHHSCTT
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987743

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.85  E-value=9.4e-21  Score=168.36  Aligned_cols=164  Identities=19%  Similarity=0.188  Sum_probs=106.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE-EEEEecC-----------CccEEEEeCCCcccCCCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKA-----------DTQICIFDTPGLMLNKSG  203 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~-~~~~~~~-----------~~~i~l~DtpG~~~~~~~  203 (424)
                      ....++|+++|.+|||||||+|+|++..+... ..+....+.. ...+...           ...+.+|||||....   
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---   83 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK-FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---   83 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcC-cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---
Confidence            34568999999999999999999998765321 1111111111 2223333           347999999997532   


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCCChhhHHHHHHH
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQ  282 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~  282 (424)
                               .......+..+|++++|+|+++..+  ...+..++..+..... .+.|+++|+||+|+...+....+....
T Consensus        84 ---------~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  152 (195)
T 3bc1_A           84 ---------RSLTTAFFRDAMGFLLLFDLTNEQS--FLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE  152 (195)
T ss_dssp             ---------HHHHHHTTTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ---------HHHHHHHHcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence                     1123345778999999999975322  2223344444332211 358999999999997532222233444


Q ss_pred             HhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +....+. +++++||++|.|+++++++|.+.+.
T Consensus       153 ~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          153 LAEKYGI-PYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4443455 4999999999999999999988763

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=1.2e-21  Score=197.35  Aligned_cols=164  Identities=23%  Similarity=0.356  Sum_probs=107.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ..+|+++|.||||||||+|+|++...+.+++.+++|++...+...+.+..+.+|||||+......    ........+..
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~----~~~~~~~~~~~   78 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP----FLAQIRQQAEI   78 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------C----HHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh----HHHHHHHHHHH
Confidence            36899999999999999999999988888999999999888888888889999999998633211    11222334455


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|++++|+|++.+.+..+..+.+++..      .+.|+++|+||+|+.......    .++.. .++..++++||+
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~------~~~pvilv~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSA~  147 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRANI----YDFYS-LGFGEPYPISGT  147 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT------CCSCEEEEEECCCC-----CC----CSSGG-GSSCCCEECBTT
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECccCccchhhH----HHHHH-cCCCCeEEEeCc
Confidence            6788999999999988777665555555543      247999999999987532111    11221 244468999999


Q ss_pred             CCcChHHHHHHHHHhccCC
Q 014461          299 KGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~~~  317 (424)
                      +|.|+++|+++|.+.+++.
T Consensus       148 ~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          148 HGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             TTBTHHHHHHHHHHTGGGC
T ss_pred             CCCChHHHHHHHHHhcCcc
Confidence            9999999999999988753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.85  E-value=8.5e-21  Score=169.52  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=110.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.++|+++|.+|||||||+|+|++..+.  .....|+..........++  ..+.+|||||...+...          
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------   87 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL----------   87 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT----------
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHH----------
Confidence            346799999999999999999999987753  3333444443333344444  34699999997654211          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCC--hhhHHHHHHHHhcCCCCC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~  290 (424)
                        ....+..+|++++|+|+++..+.  ..+ ..|+..+... .++.|+++|+||+|+...  .....+....+....+..
T Consensus        88 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (194)
T 3reg_A           88 --RPLSYADSDVVLLCFAVNNRTSF--DNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV  162 (194)
T ss_dssp             --GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred             --hHhhccCCcEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence              12346788999999999753221  121 2333332221 235899999999999753  223334445555555665


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      .++++||++|.|+++++++|.+.+...
T Consensus       163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          163 AYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             EEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            699999999999999999999987544

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.85  E-value=3.6e-21  Score=171.63  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=106.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+...... ..+.......+..++  ..+.+|||||...+...         . 
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~-   87 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI---------T-   87 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC---------C-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-cccceeEEEEEEECCEEEEEEEEECCCchhhhhh---------H-
Confidence            4568999999999999999999998776432222 122222222233333  57899999997654321         1 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+..+.+....+. .+++
T Consensus        88 --~~~~~~~d~ii~v~d~~~~~--s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  162 (191)
T 2a5j_A           88 --RSYYRGAAGALLVYDITRRE--TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFME  162 (191)
T ss_dssp             --HHHHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             --HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EEEE
Confidence              12356789999999997532  222334455544333334689999999999965322222333444443444 5999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       163 ~Sa~~~~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          163 TSAKTACNVEEAFINTAKEIY  183 (191)
T ss_dssp             ECTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.85  E-value=4.5e-21  Score=172.45  Aligned_cols=164  Identities=15%  Similarity=0.141  Sum_probs=110.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|++..+.  .....++.........  .....+.+|||||...+....          
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   89 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP----------   89 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC----------
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH----------
Confidence            46799999999999999999999987765  2333333333333333  345678999999976543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|+++.  .....+..|+..+... ...+.|+++|+||+|+...+.........+....+. +++
T Consensus        90 --~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  164 (201)
T 3oes_A           90 --YSFIIGVHGYVLVYSVTSL--HSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFM  164 (201)
T ss_dssp             --GGGTTTCCEEEEEEETTCH--HHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred             --HHHHhcCCEEEEEEeCCCH--HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEE
Confidence              1345778999999999752  2223444555554332 123579999999999975433333334444444455 599


Q ss_pred             EEecCCCcChHHHHHHHHHhccCC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ++||++|.|+++++++|.+.+...
T Consensus       165 ~~Sa~~~~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          165 ESSARENQLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999988544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.85  E-value=3.1e-21  Score=173.30  Aligned_cols=164  Identities=17%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .+.++|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||.....         .   .
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~---~   93 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR---------S---I   93 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH---------H---H
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh---------h---h
Confidence            457999999999999999999999876532 22222222222222222233568999999975431         1   1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC------ChhhHHHHHHHHhcCCCC
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT------KKKDLLKVAEQFKHLPGY  289 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~------~~~~~~~~~~~~~~~~~~  289 (424)
                      ....+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+..      .+....+....+....+.
T Consensus        94 ~~~~~~~~d~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~  171 (199)
T 2p5s_A           94 AKSYFRKADGVLLLYDVTCEKS--FLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA  171 (199)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             HHHHHhhCCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC
Confidence            2234567899999999975322  22233444443332233589999999999852      112222333444433444


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                       +++++||++|.|+++++++|.+.+.
T Consensus       172 -~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          172 -LFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             -EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             -eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             5999999999999999999998774

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=169.97  Aligned_cols=163  Identities=17%  Similarity=0.071  Sum_probs=108.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.++|+++|.+|||||||+|+|.+..+.  ....+++.......+..++  ..+.+|||||...+.         ...
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~   79 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---------AIR   79 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------HHH
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---------HHH
Confidence            346789999999999999999999987753  3444444444333344444  478999999975431         111


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                         ...+..+|++++|+|+++..  ....+..|+..+.... ..+.|+++|+||+|+...+....+....+....+. ++
T Consensus        80 ---~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
T 2bov_A           80 ---DNYFRSGEGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NY  153 (206)
T ss_dssp             ---HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EE
T ss_pred             ---HHHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eE
Confidence               22356689999999997532  2223334444333221 23589999999999975432222233334333344 59


Q ss_pred             EEEecCCCcChHHHHHHHHHhcc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +++||++|.|+++++++|.+.+.
T Consensus       154 ~~~Sa~~g~gi~~l~~~l~~~i~  176 (206)
T 2bov_A          154 VETSAKTRANVDKVFFDLMREIR  176 (206)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.85  E-value=3e-20  Score=165.78  Aligned_cols=157  Identities=14%  Similarity=0.118  Sum_probs=105.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..+|+++|.+|||||||+|+|.+..+....+..+.    ....+..++..+.+|||||...+...            ..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~------------~~   85 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELAIGNIKFTTFDLGGHIQARRL------------WK   85 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEEETTEEEEEEECCCSGGGTTS------------GG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEEECCEEEEEEECCCCHHHHHH------------HH
Confidence            457999999999999999999998776543333333    23445567789999999998654221            11


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC----------
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL----------  286 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----------  286 (424)
                      ..+..+|++++|+|++++.  .......++..+... ...+.|+++|+||+|+... ....+..+.+...          
T Consensus        86 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 1m2o_B           86 DYFPEVNGIVFLVDAADPE--RFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEG  162 (190)
T ss_dssp             GGCTTCCEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCS
T ss_pred             HHHhcCCEEEEEEECCChH--HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccc
Confidence            3457889999999997532  223344444443221 1235899999999999763 2222222222211          


Q ss_pred             CCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461          287 PGYERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ....++++|||++|.|+++++++|.+.
T Consensus       163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          163 QRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            122369999999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.85  E-value=4.7e-20  Score=163.11  Aligned_cols=160  Identities=15%  Similarity=0.198  Sum_probs=107.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+++|.+..+....+..+.+.    ..+..++..+.+|||||.....            ...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~~~------------~~~   77 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQRKIR------------PYW   77 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSCGGGH------------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCCHHHH------------HHH
Confidence            457899999999999999999999887655444444332    2234557889999999975421            112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--C-CCCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~  292 (424)
                      ...+..+|++++|+|+++..  .......++..+... ...+.|+++|+||+|+.... ...+..+.+..  . .....+
T Consensus        78 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  154 (181)
T 1fzq_A           78 RSYFENTDILIYVIDSADRK--RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDRVWQI  154 (181)
T ss_dssp             HHHHTTCSEEEEEEETTCGG--GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEE
T ss_pred             HHHhCCCCEEEEEEECcCHH--HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-CHHHHHHHhCchhccCCceEE
Confidence            23457889999999997532  223344455544221 22358999999999997642 22222222211  1 111258


Q ss_pred             EEEecCCCcChHHHHHHHHHhcc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|||++|.|+++++++|.+.+.
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          155 QSCSALTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC-
T ss_pred             EEccCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999998774

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.84  E-value=1.8e-20  Score=163.19  Aligned_cols=160  Identities=19%  Similarity=0.188  Sum_probs=107.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+|+|.+..+....+    |.......+...+..+.+|||||......            ..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~   68 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIP----TIGFNVETVTYKNLKFQVWDLGGLTSIRP------------YW   68 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEEETTEEEEEEEECCCGGGGG------------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCC----cCccceEEEEECCEEEEEEECCCChhhhH------------HH
Confidence            356899999999999999999998876643222    22222334556688899999999864321            01


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHh----cCCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~  291 (424)
                      ...+..+|++++|+|+++..+  ......++..+... ...+.|+++|+||+|+.... ...+..+.+.    ...+. +
T Consensus        69 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~  144 (171)
T 1upt_A           69 RCYYSNTDAVIYVVDSCDRDR--IGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-TSSEMANSLGLPALKDRKW-Q  144 (171)
T ss_dssp             GGGCTTCSEEEEEEETTCCTT--HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCTTSCE-E
T ss_pred             HHHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-CHHHHHHHhCchhccCCce-E
Confidence            234678999999999976432  22333444443221 12358999999999997652 2222223222    12233 5


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++++||++|.|+++++++|.+.+.+
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          145 IFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEECcCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999988753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=6e-21  Score=170.04  Aligned_cols=171  Identities=16%  Similarity=0.140  Sum_probs=112.0

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ...+.++|+++|.+|||||||+|+|++..+... ....+++.......+......+.+|||||......         ..
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~   81 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT---------LT   81 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC---------SH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh---------hh
Confidence            345678999999999999999999998765421 11122222222222223345789999999765421         11


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                         ...+..+|++++|+|+++..  ....+..|+..+.... ..+.|+++|+||+|+.... ...+....+....+. .+
T Consensus        82 ---~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~  154 (195)
T 1x3s_A           82 ---PSYYRGAQGVILVYDVTRRD--TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNEGLKFARKHSM-LF  154 (195)
T ss_dssp             ---HHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHHHHHHHHHTTC-EE
T ss_pred             ---HHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCHHHHHHHHHHcCC-EE
Confidence               12356789999999997532  2223445666654432 2358999999999996432 222233344444454 49


Q ss_pred             EEEecCCCcChHHHHHHHHHhccCCCCCC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQRPWSE  321 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~~~~~~  321 (424)
                      +++||++|.|+++++++|.+.+...+..+
T Consensus       155 ~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  183 (195)
T 1x3s_A          155 IEASAKTCDGVQCAFEELVEKIIQTPGLW  183 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTSGGGT
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999887655433

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.84  E-value=5.7e-21  Score=168.76  Aligned_cols=165  Identities=14%  Similarity=0.159  Sum_probs=107.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ++.++|+++|.+|||||||+++|++..+.  .....++..........++  ..+.+|||||...+...           
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   69 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL-----------   69 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH-----------
Confidence            45789999999999999999999976653  2333333333222233333  45779999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE  281 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~  281 (424)
                       ....+..+|++++|+|++++.+.  ..+. .|+..+.... ++.|+++|+||+|+......            ..+...
T Consensus        70 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  145 (186)
T 1mh1_A           70 -RPLSYPQTDVSLICFSLVSPASF--ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  145 (186)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             -HHHhccCCcEEEEEEECCChhhH--HHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHH
Confidence             11246788999999999753221  1221 2333332211 25899999999999764211            112233


Q ss_pred             HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       282 ~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      .+....+..+++++||++|.|+++++++|.+.+...+
T Consensus       146 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             HHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence            3444455546999999999999999999999986654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.84  E-value=5.1e-21  Score=172.16  Aligned_cols=163  Identities=18%  Similarity=0.188  Sum_probs=103.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+.... .+..+.......+..++  ..+.+|||||...+...         . 
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---------~-   91 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV---------T-   91 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC---------C-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH---------H-
Confidence            45789999999999999999999987764322 22222222222333344  57999999997543211         1 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+.........+....+. .+++
T Consensus        92 --~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  166 (200)
T 2o52_A           92 --RSYYRGAAGALLVYDITSRE--TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLE  166 (200)
T ss_dssp             --HHHHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             --HHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEE
Confidence              12356789999999997532  222334455544333334689999999999965322222233344444454 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       167 ~SA~~g~gi~~l~~~l~~~i~  187 (200)
T 2o52_A          167 TSALTGENVEEAFLKCARTIL  187 (200)
T ss_dssp             ECTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.84  E-value=6.9e-21  Score=168.21  Aligned_cols=162  Identities=17%  Similarity=0.071  Sum_probs=107.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|++..+.  .....++.......+...+  ..+.+|||||...+.         ... 
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~-   83 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---------AIR-   83 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------HHH-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH---------HHH-
Confidence            45789999999999999999999987753  3334444443333334444  478999999975431         111 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|+++..  ....+..|+..+.... ..+.|+++|+||+|+...+.........+....+. +++
T Consensus        84 --~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  158 (187)
T 2a9k_A           84 --DNYFRSGEGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYV  158 (187)
T ss_dssp             --HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred             --HHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEE
Confidence              22356789999999997532  1223333433332211 12579999999999975322222333444444455 599


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++||++|.|+++++++|.+.+.
T Consensus       159 ~~Sa~~~~gi~~l~~~l~~~i~  180 (187)
T 2a9k_A          159 ETSAKTRANVDKVFFDLMREIR  180 (187)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.84  E-value=1.7e-20  Score=162.33  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=104.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ++|+++|.+|||||||+|+|++..+...  .+  |.......+...+..+.+|||||.....         .   .....
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~---~~~~~   64 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------P---LWRHY   64 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC--CC--CSSCCEEEEECSSCEEEEEECCCCGGGH---------H---HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc--cC--cCceeEEEEEECCEEEEEEEcCCChhhH---------H---HHHHH
Confidence            4799999999999999999997665422  22  2222233355677889999999985421         1   12234


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCeEEE
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYERIFM  294 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~  294 (424)
                      +..+|++++|+|+++.  .....+..++..+.. ....+.|+++|+||+|+.... ...+..+.+..    ..+. ++++
T Consensus        65 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  140 (164)
T 1r8s_A           65 FQNTQGLIFVVDSNDR--ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNW-YIQA  140 (164)
T ss_dssp             TTTCSEEEEEEETTCG--GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCSSCCE-EEEE
T ss_pred             hccCCEEEEEEECCCH--HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-CHHHHHHHhCcccccCccE-EEEE
Confidence            6789999999999753  222334455554432 122358999999999997642 22222232221    1122 5899


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       141 ~Sa~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          141 TCATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC-
T ss_pred             cccCCCcCHHHHHHHHHHHHh
Confidence            999999999999999998874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.84  E-value=1.9e-21  Score=170.75  Aligned_cols=166  Identities=14%  Similarity=0.152  Sum_probs=105.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC---ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      .+.++|+++|.+|||||||+|+|.+..+... ..+.++.+.....+...+   ..+.+|||||...+..         ..
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~   73 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQ-YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK---------ML   73 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHH-HHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT---------TH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCC-CCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc---------hh
Confidence            4568999999999999999999998765311 111121222233334443   6799999999765421         11


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (424)
                      .   ..+..+|++++|+|+++..+  ...+..|+..+...   .....|+++|+||+|+...+....+....+....+. 
T Consensus        74 ~---~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-  147 (178)
T 2hxs_A           74 D---KYIYGAQGVLLVYDITNYQS--FENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF-  147 (178)
T ss_dssp             H---HHHTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-
T ss_pred             h---HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC-
Confidence            1   23567899999999975322  12222333333211   011234899999999975322222333444443444 


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      +++++||++|.|+++++++|.+.+...+
T Consensus       148 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          148 SSHFVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             EEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            4999999999999999999999886654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.84  E-value=7.3e-21  Score=165.53  Aligned_cols=162  Identities=14%  Similarity=0.107  Sum_probs=100.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|.+|||||||+|+|.+.........+ ++.......+..++  ..+.+|||||.........           
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-----------   69 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ-----------   69 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccccchhhh-----------
Confidence            478999999999999999999876654333322 22333333333343  5688999999865421110           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ...+..+|++++|+|+++.  .....+..|+..+.... ..+.|+++|+||+|+...+....+....+....+. +++++
T Consensus        70 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  146 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDR--RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIET  146 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCH--HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             hhhhccCCEEEEEEECCCh--HHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEe
Confidence            0124458999999999752  12223334444433221 12589999999999975433344445555555566 59999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       147 Sa~~~~~v~~l~~~l~~~i~  166 (169)
T 3q85_A          147 SAALHHNTRELFEGAVRQIR  166 (169)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             cCccCCCHHHHHHHHHHHHH
Confidence            99999999999999988763

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.84  E-value=8.5e-21  Score=171.31  Aligned_cols=161  Identities=14%  Similarity=0.168  Sum_probs=106.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||++++++..+.  .....++.......+..++.  .+.+|||||...+...           
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------   94 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL-----------   94 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT-----------
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH-----------
Confidence            46799999999999999999999976653  34444554444444444544  4559999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE  281 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~  281 (424)
                       ....+..+|++++|+|+++..+.  ..+. .|+..+.... ++.|+++|+||+|+......            ......
T Consensus        95 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  170 (204)
T 4gzl_A           95 -RPLSYPQTDVFLICFSLVSPASF--ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  170 (204)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             -HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence             11346788999999999753222  1221 2333332221 35899999999999765321            122333


Q ss_pred             HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       282 ~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+....+..++++|||++|.|+++++++|.+.+
T Consensus       171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             HHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            455555666799999999999999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.84  E-value=3.6e-20  Score=163.63  Aligned_cols=159  Identities=19%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...+.++|+++|.+|||||||+|+|++..+.......+.+..    .+..++..+.+|||||.......           
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~-----------   81 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRSS-----------   81 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSGGGTCG-----------
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCHhHHHH-----------
Confidence            345679999999999999999999999887555555554432    23346788999999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHh----cCCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGY  289 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~  289 (424)
                       ....+..+|++++|+|+++..  ....+..++..+... ...+.|+++|+||+|+.... ...+..+.+.    ...+.
T Consensus        82 -~~~~~~~~d~ii~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  157 (181)
T 2h17_A           82 -WNTYYTNTEFVIVVVDSTDRE--RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW  157 (181)
T ss_dssp             -GGGGGTTCCEEEEEEETTCTT--THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCE
T ss_pred             -HHHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-CHHHHHHHhCcccccCCce
Confidence             123467889999999997642  223344444443321 12358999999999997641 1222222221    11122


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHh
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                       .++++||++|.|+++++++|.+.
T Consensus       158 -~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          158 -HIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             -EEEECBTTTTBTHHHHHHHHHTC
T ss_pred             -EEEEccCCCCcCHHHHHHHHHhh
Confidence             58999999999999999999764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.84  E-value=1.1e-20  Score=178.52  Aligned_cols=167  Identities=20%  Similarity=0.278  Sum_probs=117.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.++|+++|++|||||||+|+|+|... .++..+++|.....+.+...+..+.+|||||+.......    ....+...+
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~~~   76 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS----IDELIARNF   76 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC----HHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC----HHHHHHHHh
Confidence            457999999999999999999999877 678899999888888888888899999999997653321    112233333


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .....+|++++|+|+++.  .....+...+.+.+     ..|+++|+||+|+....... .....+....+.+ ++++||
T Consensus        77 ~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-~~~~Sa  147 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTCL--MRNLFLTLELFEME-----VKNIILVLNKFDLLKKKGAK-IDIKKMRKELGVP-VIPTNA  147 (271)
T ss_dssp             HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTT-----CCSEEEEEECHHHHHHHTCC-CCHHHHHHHHSSC-EEECBG
T ss_pred             hhccCCcEEEEEecCCcc--hhhHHHHHHHHhcC-----CCCEEEEEEChhcCcccccH-HHHHHHHHHcCCc-EEEEEe
Confidence            334679999999999752  11112222222221     27899999999975421100 0122333333544 999999


Q ss_pred             CCCcChHHHHHHHHHhccCCC
Q 014461          298 LKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ++|.|+++++++|.+.+....
T Consensus       148 ~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999876543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=168.67  Aligned_cols=166  Identities=14%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ....++|+++|.+|||||||+|+|.+.... ....+.++.+.....+..++  ..+.+|||||.....         ..+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~   89 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWL   89 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHH
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhh
Confidence            345689999999999999999999875432 12334444433333333444  467899999985421         111


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      ..  ..+..+|++++|+|+++..  ....+..|+..+.... ..+.|+++|+||+|+...+....+....+....+. .+
T Consensus        90 ~~--~~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~  164 (195)
T 3cbq_A           90 RD--HCLQTGDAFLIVFSVTDRR--SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KH  164 (195)
T ss_dssp             HH--HHHHHCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EE
T ss_pred             HH--HhhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EE
Confidence            11  2345789999999997532  2223444554443221 13589999999999976433333334455544455 59


Q ss_pred             EEEecCCCcChHHHHHHHHHhccC
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++||++|.|+++++++|.+.+..
T Consensus       165 ~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          165 IETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.84  E-value=4.2e-22  Score=181.99  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=112.6

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      .....++|+++|.+|||||||+|+++... ........+++...........+..+.+|||||...+....         
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------   81 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR---------   81 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC---------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH---------
Confidence            34567899999999999999999965443 34456667777766655555556679999999976543211         


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      .   ..+..+|++++|+|+++..+  ...+..|+..+.... .+.|+++|+||+|+.......  ....+....+. .++
T Consensus        82 ~---~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~  152 (221)
T 3gj0_A           82 D---GYYIQAQCAIIMFDVTSRVT--YKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNL-QYY  152 (221)
T ss_dssp             H---HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTC-EEE
T ss_pred             H---HHHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhC-CCCCEEEEEECCccccccccH--HHHHHHHHcCC-EEE
Confidence            1   23457899999999975322  222334444433221 258999999999997642111  11112222233 599


Q ss_pred             EEecCCCcChHHHHHHHHHhccCCCC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      +|||++|.|+++++++|.+.+...+.
T Consensus       153 ~~Sa~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          153 DISAKSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             ECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999998876543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.84  E-value=7.3e-20  Score=161.42  Aligned_cols=160  Identities=15%  Similarity=0.154  Sum_probs=107.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+|+|.+..+.......+.+.    ..+..++..+.+|||||.......            .
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~------------~   79 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTSIRPY------------W   79 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC----CCTT------------G
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCHhHHHH------------H
Confidence            467999999999999999999999887754444444332    223456788999999998654221            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~  292 (424)
                      ...+..+|++++|+|+++..  ....+..++..+.... ..+.|+++|+||+|+.... ...+..+.+...   ....++
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~  156 (183)
T 1moz_A           80 RCYYADTAAVIFVVDSTDKD--RMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSKELNLVELKDRSWSI  156 (183)
T ss_dssp             GGTTTTEEEEEEEEETTCTT--THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHHHTTTTTCCSSCEEE
T ss_pred             HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-CHHHHHHHhCcccccCCceEE
Confidence            13467889999999997642  2334455555554321 3468999999999997642 222222222211   111258


Q ss_pred             EEEecCCCcChHHHHHHHHHhcc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +++||++|.|+++++++|.+.+.
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          157 VASSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEccCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.84  E-value=1.3e-20  Score=162.73  Aligned_cols=160  Identities=16%  Similarity=0.149  Sum_probs=104.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.++|+++|.+|||||||+|+|.+..+.  .....++.......+...+  ..+.+|||||...+.      .   ... 
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~---~~~-   69 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS------A---MRD-   69 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC------H---HHH-
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhhh------H---HHH-
Confidence            3578999999999999999999987653  2233333333333333333  457899999976431      1   111 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ..+..+|++++|+|+++..  ....+..++..+... ...+.|+++|+||+|+... .........+....+. ++++
T Consensus        70 --~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~  143 (166)
T 2ce2_X           70 --QYMRTGEGFLCVFAINNTK--SFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARSYGI-PYIE  143 (166)
T ss_dssp             --HHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-CEEE
T ss_pred             --HhhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc-ccCHHHHHHHHHHcCC-eEEE
Confidence              2345689999999997531  222333444433221 1124789999999999763 2223334444444455 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       144 ~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          144 TSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             ECTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.84  E-value=1.3e-20  Score=167.25  Aligned_cols=159  Identities=13%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ...+.++|+++|.+|||||||+|++++..+....  ..+ .......+..++  ..+.+|||||...+.           
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~--~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------   81 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE--SPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----------   81 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC--CTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----------
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence            4567899999999999999999999987764222  122 222223344444  456789999975421           


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCC--ChhhHHHHHHHHhcCCCC
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGY  289 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~  289 (424)
                            .+..+|++++|+|+++..  ....+..|+..+..... .+.|+++|+||+|+..  .+....+....+....+.
T Consensus        82 ------~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~  153 (184)
T 3ihw_A           82 ------FAAWVDAVVFVFSLEDEI--SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR  153 (184)
T ss_dssp             ------HHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT
T ss_pred             ------eecCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC
Confidence                  345689999999997532  22344456665543321 3579999999999942  222233344555555554


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..+++|||++|.|+++++++|.+.+.
T Consensus       154 ~~~~e~Sa~~~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          154 CTYYETCATYGLNVERVFQDVAQKVV  179 (184)
T ss_dssp             CEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            46999999999999999999988763

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.84  E-value=1.1e-20  Score=166.83  Aligned_cols=165  Identities=15%  Similarity=0.119  Sum_probs=108.3

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhh
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      ....+.++|+++|.+|||||||+|+|++..+.  .....++..........++.  .+.+|||||...+..         
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------   81 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA---------   81 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS---------
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH---------
Confidence            34556799999999999999999999977553  33333433333334444444  356799999765421         


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (424)
                      ...   ..+..+|++++|+|+++..+  ...+..|+..+.. ....+.|+++|+||+|+...+....+....+....+..
T Consensus        82 ~~~---~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  156 (183)
T 3kkq_A           82 MRE---QYMRTGDGFLIVYSVTDKAS--FEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP  156 (183)
T ss_dssp             SHH---HHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC
T ss_pred             HHH---HHHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe
Confidence            111   23456899999999975321  1223333333321 12235789999999999764433334444555444544


Q ss_pred             eEEEEecC-CCcChHHHHHHHHHhcc
Q 014461          291 RIFMTSGL-KGAGLKALTQYLMEQAV  315 (424)
Q Consensus       291 ~~~~iSA~-~g~gi~~L~~~i~~~l~  315 (424)
                       ++++||+ +|.|+++++++|.+.+.
T Consensus       157 -~~~~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          157 -YIETSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             -EEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             -EEEeccCCCCCCHHHHHHHHHHHHh
Confidence             9999999 99999999999988763

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.84  E-value=1.1e-20  Score=170.88  Aligned_cols=162  Identities=16%  Similarity=0.153  Sum_probs=106.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+.. ...+.++.......+..++  ..+.+|||||...+...         . 
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~-   86 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI---------T-   86 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC---------C-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH---------H-
Confidence            456899999999999999999999876542 2233333333333344444  57899999997654221         1 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+... ....+....+....++ ++++
T Consensus        87 --~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~  160 (213)
T 3cph_A           87 --TAYYRGAMGIILVYDVTDERT--FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVTADQGEALAKELGI-PFIE  160 (213)
T ss_dssp             --HHHHTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC-CSCHHHHHHHHHHHTC-CEEE
T ss_pred             --HHHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc-ccCHHHHHHHHHHcCC-EEEE
Confidence              123567899999999975321  122334444433322335899999999999532 2222333344433455 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       161 ~Sa~~~~gi~~l~~~l~~~~~  181 (213)
T 3cph_A          161 SSAKNDDNVNEIFFTLAKLIQ  181 (213)
T ss_dssp             CBTTTTBSSHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.84  E-value=2.7e-20  Score=166.47  Aligned_cols=162  Identities=22%  Similarity=0.278  Sum_probs=106.1

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ......+|+++|.+|||||||+|+|++..+..+  ....+    .....+...+..+.+|||||...+..      .   
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~------~---   79 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGAKKFRG------L---   79 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCSGGGGG------G---
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCCHhHHH------H---
Confidence            445678999999999999999999999887643  22222    22333456788899999999865421      0   


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC--------CCCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK  284 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~--------~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~  284 (424)
                         ....+..+|++++|+|+++..  ....+..++..+...        ...+.|+++|+||+|+.... ...+..+.+.
T Consensus        80 ---~~~~~~~~d~ii~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~  153 (199)
T 4bas_A           80 ---WETYYDNIDAVIFVVDSSDHL--RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILD  153 (199)
T ss_dssp             ---GGGGCTTCSEEEEEEETTCGG--GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHT
T ss_pred             ---HHHHHhcCCEEEEEEECCcHH--HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhc
Confidence               113467899999999997532  223333444443221        01257899999999998752 1222222221


Q ss_pred             -----cCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          285 -----HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       285 -----~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                           ...+. .+++|||++|.|+++++++|.+.+..
T Consensus       154 ~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          154 LTTLMGDHPF-VIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             HHHHHTTSCE-EEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             chhhccCCee-EEEEeeCCCccCHHHHHHHHHHHHHH
Confidence                 33343 59999999999999999999987753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.84  E-value=6.6e-21  Score=165.34  Aligned_cols=161  Identities=17%  Similarity=0.150  Sum_probs=104.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||+|+|.+..+... ..+..+.+.....+..+  ...+.+|||||...+...         .  
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~--   71 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD-YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI---------T--   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCC-SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC---------C--
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH---------H--
Confidence            468999999999999999999998765421 12222222222223333  347899999997654221         1  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ...+..+|++++|+|+++..  ....+..|+..+.... .+.|+++|+||+|+...+....+..+.+....+. +++++
T Consensus        72 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  146 (168)
T 1z2a_A           72 -KAYYRGAQACVLVFSTTDRE--SFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRT  146 (168)
T ss_dssp             -HHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEC
T ss_pred             -HHHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEE
Confidence             12346789999999997532  1122333443332211 3578999999999975322222333444444455 59999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.|+++++++|.+.+.
T Consensus       147 Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          147 SVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             BTTTTBSSHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHHHh
Confidence            99999999999999988763

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.84  E-value=1e-20  Score=172.02  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=108.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC------------CccEEEEeCCCcccCCCCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------DTQICIFDTPGLMLNKSGY  204 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~------------~~~i~l~DtpG~~~~~~~~  204 (424)
                      ...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+...            ...+.+|||||...+    
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----   97 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----   97 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH----
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH----
Confidence            456899999999999999999999876531 111111111111112222            457999999996432    


Q ss_pred             ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCCChhhHHHHHHHH
Q 014461          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQF  283 (424)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~  283 (424)
                              .......+..+|++++|+|+++.  .....+..|+..+..... .+.|+++|+||+|+...+.......+.+
T Consensus        98 --------~~~~~~~~~~~d~iilV~D~~~~--~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  167 (217)
T 2f7s_A           98 --------RSLTTAFFRDAMGFLLMFDLTSQ--QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL  167 (217)
T ss_dssp             --------HHHHHHHHTTCCEEEEEEETTCH--HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             --------HhHHHHHhcCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence                    11223456788999999999752  223345567776654332 4689999999999975333223344555


Q ss_pred             hcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       284 ~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ....+.. ++++||++|.|+++++++|.+.+.
T Consensus       168 ~~~~~~~-~~~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          168 ADKYGIP-YFETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             HHHTTCC-EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHCCCc-EEEEECCCCCCHHHHHHHHHHHHH
Confidence            5555554 999999999999999999988763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.84  E-value=2.2e-20  Score=167.20  Aligned_cols=159  Identities=19%  Similarity=0.179  Sum_probs=103.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-------------------------------
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-------------------------------  186 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-------------------------------  186 (424)
                      ..++|+++|.+|||||||+|+|++..+.. ...+.+........+...+                               
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            56899999999999999999999876541 1111111222222233332                               


Q ss_pred             --------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCC
Q 014461          187 --------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ  258 (424)
Q Consensus       187 --------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~  258 (424)
                              ..+.+|||||......            .....+..+|++++|+|++++.  ....+..|+..+....  ..
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~~~~~~d~~i~v~D~~~~~--s~~~~~~~~~~i~~~~--~~  148 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYAS------------IVPLYYRGATCAIVVFDISNSN--TLDRAKTWVNQLKISS--NY  148 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTT------------THHHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHS--CC
T ss_pred             cccCccceeEEEEEECCCcHHHHH------------HHHHHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHhhC--CC
Confidence                    6789999999765421            1123456789999999997532  2223344554443221  27


Q ss_pred             cEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       259 p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      |+++|+||+|+ .......+....+....+. +++++||++|.|+++++++|.+.+.
T Consensus       149 piilv~NK~D~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          149 IIILVANKIDK-NKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             EEEEEEECTTC-C-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCc-ccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHH
Confidence            99999999994 3222222333444444455 5999999999999999999987763

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.84  E-value=3.3e-20  Score=164.30  Aligned_cols=161  Identities=18%  Similarity=0.187  Sum_probs=107.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+|++++.......+..+    .....+..++..+.+|||||......            ..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~   79 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQKSLRS------------YW   79 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSHHHHT------------TG
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCHhHHH------------HH
Confidence            457999999999999999999999877322222222    22333445788899999999854311            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~  291 (424)
                      ...+..+|++++|+|++++.+  ...+..++..+... ...+.|+++|+||+|+.... ...+..+.+..    ..+ .+
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~-~~  155 (186)
T 1ksh_A           80 RNYFESTDGLIWVVDSADRQR--MQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-SCNAIQEALELDSIRSHH-WR  155 (186)
T ss_dssp             GGGCTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSC-EE
T ss_pred             HHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC-CHHHHHHHhChhhccCCc-eE
Confidence            234678999999999975322  23334444443221 12358999999999997642 22233333321    122 25


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccCC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ++++||++|.|+++++++|.+.+.+.
T Consensus       156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          156 IQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.84  E-value=9e-21  Score=168.61  Aligned_cols=165  Identities=16%  Similarity=0.178  Sum_probs=103.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.++|+++|.+|||||||+|+|++..+.... .+..+.+.....+..++  ..+.+|||||......        ...
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~   87 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK--------SMV   87 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT--------TTH
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh--------hhh
Confidence            345789999999999999999999987664322 12222222222233333  5789999999753210        111


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                         ...+..+|++++|+|+++..+  ...+..|+..+.... ..+.|+++|+||+|+...+....+..+.+....+. .+
T Consensus        88 ---~~~~~~~d~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~  161 (189)
T 1z06_A           88 ---QHYYRNVHAVVFVYDMTNMAS--FHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PL  161 (189)
T ss_dssp             ---HHHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CE
T ss_pred             ---HHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EE
Confidence               223567899999999975321  122333444332211 23589999999999965433233444555555555 49


Q ss_pred             EEEecCCC---cChHHHHHHHHHhcc
Q 014461          293 FMTSGLKG---AGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g---~gi~~L~~~i~~~l~  315 (424)
                      +++||++|   .|+++++++|.+.+.
T Consensus       162 ~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          162 FETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             EECCSSSGGGGSCHHHHHHHHC----
T ss_pred             EEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            99999999   999999999987764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=171.29  Aligned_cols=164  Identities=18%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.++|+++|.+|||||||+|+|++..+..  ....++.......+..++  ..+.+|||||...+..           
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-----------   97 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-----------   97 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-----------
Confidence            3467899999999999999999999877642  222333333222233333  3689999999764321           


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHH
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA  280 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~  280 (424)
                       .....+..+|++++|+|+++..+  ...+. .|+..+.... ++.|+++|+||+|+......            ..+..
T Consensus        98 -~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  173 (214)
T 2j1l_A           98 -LRPLFYPDASVLLLCFDVTSPNS--FDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG  173 (214)
T ss_dssp             --------CEEEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred             -HHHHHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence             01123568899999999975321  12222 3443332211 35899999999999765321            11223


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ..+....+...+++|||++|.|+++++++|.+.+..
T Consensus       174 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            445544566569999999999999999999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.84  E-value=3.4e-20  Score=164.94  Aligned_cols=162  Identities=13%  Similarity=0.123  Sum_probs=107.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+.++|+++|.+|||||||+|+|++..+..  .... |.......+...+..+.+|||||...+.         .... 
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~-   85 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIP-TVGFNMRKITKGNVTIKLWDIGGQPRFR---------SMWE-   85 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCC-CCSEEEEEEEETTEEEEEEEECCSHHHH---------TTHH-
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCC-CCceeEEEEEeCCEEEEEEECCCCHhHH---------HHHH-
Confidence            4457899999999999999999999876541  1111 2222223355678889999999975431         1111 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCe
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYER  291 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~  291 (424)
                        ..+..+|++++|+|+++.  .....+..++..+... ...+.|+++|+||+|+.... ...+..+.+...   .....
T Consensus        86 --~~~~~~d~ii~v~D~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  160 (188)
T 1zd9_A           86 --RYCRGVSAIVYMVDAADQ--EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREIC  160 (188)
T ss_dssp             --HHHTTCSEEEEEEETTCG--GGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEE
T ss_pred             --HHHccCCEEEEEEECCCH--HHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-CHHHHHHHhChhhhccCCee
Confidence              235778999999999753  2223444455444321 12358999999999997642 222223332211   11235


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +++|||++|.|+++++++|.+.+.
T Consensus       161 ~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          161 CYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999998774

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.6e-20  Score=171.76  Aligned_cols=164  Identities=15%  Similarity=0.125  Sum_probs=105.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|.+..+..... +..+.......+..++  ..+.+|||||...+....          
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------   79 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT----------   79 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCccchhhhH----------
Confidence            456899999999999999999999877653222 2222222222233444  578999999976543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++..  ....+..|+..+......+.|+++|+||+|+...+....+....+....+. .+++
T Consensus        80 --~~~~~~~d~vilV~D~~~~~--s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  154 (223)
T 3cpj_B           80 --SAYYRGAVGALIVYDISKSS--SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTE  154 (223)
T ss_dssp             --GGGTTTCCEEEEEEC-CCHH--HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             --HHHhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence              13457789999999997532  223344555554433334589999999999975322222334444444454 5999


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +||++|.|+++++++|.+.+..
T Consensus       155 ~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          155 TSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             CCCC-CCCHHHHHHHHHHHHTT
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998854

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.83  E-value=1.2e-20  Score=171.83  Aligned_cols=167  Identities=13%  Similarity=0.147  Sum_probs=109.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ....++|+++|.+|||||||+++|++..+.  .....|+.......+..  ....+.+|||||...+...          
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------   91 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV----------   91 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT----------
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH----------
Confidence            346799999999999999999999987764  23233333332222233  3457899999998654221          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHH
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAE  281 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~  281 (424)
                        ....+..+|++++|+|+++..+... .+..|+..+.... ++.|+++|+||+|+...            +....+...
T Consensus        92 --~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  167 (214)
T 3q3j_B           92 --RPLCYSDSDAVLLCFDISRPETVDS-ALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC  167 (214)
T ss_dssp             --GGGGCTTCSEEEEEEETTCTHHHHH-HHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             --HHHHcCCCeEEEEEEECcCHHHHHH-HHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence              1134678999999999976322211 1234444433222 35899999999999752            122233445


Q ss_pred             HHhcCCCCCeEEEEecCCCcC-hHHHHHHHHHhccCCC
Q 014461          282 QFKHLPGYERIFMTSGLKGAG-LKALTQYLMEQAVQRP  318 (424)
Q Consensus       282 ~~~~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~~~~  318 (424)
                      .+....+...+++|||++|.| ++++|++|.+.+....
T Consensus       168 ~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence            555555665699999999998 9999999999886543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.83  E-value=6.3e-20  Score=163.28  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=106.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+.++|+++|.+|||||||+|+|++....... . ..|.......+..++..+.+|||||......      .      
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~------   83 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN------L------   83 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGG------G------
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHH------H------
Confidence            346789999999999999999999987732222 2 2233334444566788999999999764321      0      


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEEecCCCCCChhhHHHHHHHHh--cCC-CC
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP---PKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLP-GY  289 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~~-~~  289 (424)
                      ....+..+|++++|+|+++..  ....+..++..+.....   .+.|+++|+||+|+.... ...+..+.+.  ... ..
T Consensus        84 ~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~  160 (190)
T 2h57_A           84 WEHYYKEGQAIIFVIDSSDRL--RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-TSVKVSQLLCLENIKDKP  160 (190)
T ss_dssp             GGGGGGGCSEEEEEEETTCHH--HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSC
T ss_pred             HHHHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-CHHHHHHHhChhhccCCc
Confidence            123467889999999997531  12233344443322211   358999999999997642 2222222221  111 12


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..++++||++|.|+++++++|.+.+.
T Consensus       161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          161 WHICASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             eEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            25999999999999999999998774

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.83  E-value=2.7e-20  Score=167.68  Aligned_cols=162  Identities=21%  Similarity=0.168  Sum_probs=105.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++  ..+.+|||||...+....          
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   74 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------   74 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH----------
Confidence            356899999999999999999999877542 2222222333333333333  578999999976543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-CCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY  289 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~  289 (424)
                        ...+..+|++++|+|++++.+  ...+..|+..+..    ....+.|+++|+||+|+... ....+....+.. ..+.
T Consensus        75 --~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  149 (207)
T 1vg8_A           75 --VAFYRGADCCVLVFDVTAPNT--FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNI  149 (207)
T ss_dssp             --CGGGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSC
T ss_pred             --HHHHhCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccCHHHHHHHHHhcCCc
Confidence              134567899999999975321  1122233332211    11134789999999999743 222333444444 3344


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                       +++++||++|.|+++++++|.+.+.
T Consensus       150 -~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          150 -PYFETSAKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             -CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             5999999999999999999998874

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.83  E-value=8.1e-20  Score=162.32  Aligned_cols=160  Identities=18%  Similarity=0.187  Sum_probs=108.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+|+|.+..+....+..+.+    ...+...+..+.+|||||........            
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~~~~~~~------------   83 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQTGVRPYW------------   83 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSSSSCCCC------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCHhHHHHH------------
Confidence            46789999999999999999999987765433322222    22344567889999999986543211            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHh----cCCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~  291 (424)
                      ...+..+|++++|+|++++.+  ......++..+.. ....+.|+++|+||+|+.... ...+..+.+.    ...+. +
T Consensus        84 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~  159 (189)
T 2x77_A           84 RCYFSDTDAVIYVVDSTDRDR--MGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-SEAEIAEQLGVSSIMNRTW-T  159 (189)
T ss_dssp             SSSSTTCCEEEEEEETTCCTT--HHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCE-E
T ss_pred             HHHhhcCCEEEEEEeCCCHHH--HHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhccCCce-E
Confidence            123567899999999976432  2333444444322 222458999999999997642 2222222222    11222 5


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++++||++|.|+++++++|.+.+..
T Consensus       160 ~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          160 IVKSSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEccCCCccCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.83  E-value=3.9e-20  Score=181.41  Aligned_cols=172  Identities=20%  Similarity=0.254  Sum_probs=113.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ..|+++|++|||||||+|+|++... .+++.+++|++...+.+..++..+.+|||||+...   .+ .+..+.+..++..
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~---lp-~~lve~f~~tl~~  254 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG---IP-PQIVDAFFVTLSE  254 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSS---CC-GGGHHHHHHHHHG
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhc---CC-HHHHHHHHHHHHH
Confidence            3499999999999999999999875 46778888888777777777888999999998643   22 2233446777788


Q ss_pred             cccccEEEEEEeCCCCCCCchH---HHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-hHHHHHHHHhcC--CCCCeEE
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHL--PGYERIF  293 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~---~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~  293 (424)
                      +..+|++++|+|+++..+....   .+.+++..++.   .+.|+++|+||+|+..... ........+...  ....+++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~  331 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGV---SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI  331 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC---CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc---CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence            8999999999999754211121   23455565542   2478999999999976421 111122112111  1123589


Q ss_pred             EEecCCCcChHHHHHHHHHhccCCCC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      ++||++|.|+++|+++|.+.+...++
T Consensus       332 ~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          332 PISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             EEECCCCcCHHHHHHHHHHHhcccCC
Confidence            99999999999999999998865543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.83  E-value=6.8e-21  Score=169.84  Aligned_cols=164  Identities=11%  Similarity=0.096  Sum_probs=107.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEE-----EecCCccEEEEeCCCcccCCCCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGV-----MTKADTQICIFDTPGLMLNKSGY  204 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~-----~~~~~~~i~l~DtpG~~~~~~~~  204 (424)
                      ...++|+++|.+|||||||++.+.+........       ....|.......     .......+.+|||||...+.   
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---   88 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---   88 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence            457899999999999999998887644321111       011122111110     11223468999999976432   


Q ss_pred             ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC----chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH
Q 014461          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS----PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA  280 (424)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~----~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~  280 (424)
                            ...   ...+..+|++++|+|++++...    ....+..|+.+.. ....+.|+++|+||+|+...  ...+..
T Consensus        89 ------~~~---~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~  156 (198)
T 3t1o_A           89 ------ASR---KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMV  156 (198)
T ss_dssp             ------HHH---HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHH
T ss_pred             ------HHH---HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHH
Confidence                  111   1346789999999999743111    1224556666653 22346899999999999764  233445


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..+....+...++++||++|.|+++++++|.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            56666667745999999999999999999988764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.8e-20  Score=166.05  Aligned_cols=162  Identities=14%  Similarity=0.127  Sum_probs=107.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+++|++..+.  .....|+.......+..++  ..+.+|||||...+...           
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------   82 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-----------   82 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-----------
Confidence            35689999999999999999999987653  3334444333333344444  56889999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE  281 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~  281 (424)
                       ....+..+|++++|+|+++..+  ...+. .|+..+... .++.|+++|+||+|+....            ....+...
T Consensus        83 -~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  158 (194)
T 2atx_A           83 -RPLSYPMTDVFLICFSVVNPAS--FQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ  158 (194)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred             -HHHhcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence             1134678899999999975321  11222 333333222 1258999999999997642            11122333


Q ss_pred             HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       282 ~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+....+...++++||++|.|+++++++|.+.+.
T Consensus       159 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          159 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            4444445545999999999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.83  E-value=1.3e-20  Score=165.59  Aligned_cols=164  Identities=18%  Similarity=0.178  Sum_probs=100.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      .+.++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..+   ...+.+|||||...+..           
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------   73 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-----------   73 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-----------
Confidence            356899999999999999999999876542 112222222222333333   35789999999654321           


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHhcCCC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPG  288 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~  288 (424)
                       .....+..+|++++|+|+++..+  ...+..|+..+..    ....+.|+++|+||+|+.... ....+....+.....
T Consensus        74 -~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~  150 (182)
T 1ky3_A           74 -LGVAFYRGADCCVLVYDVTNASS--FENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG  150 (182)
T ss_dssp             ----CCSTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT
T ss_pred             -hhHHHhhcCCEEEEEEECCChHH--HHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcC
Confidence             12245678899999999975321  1222333333221    122458999999999996432 112333444544223


Q ss_pred             CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          289 YERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       289 ~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..+++++||++|.|+++++++|.+.+.
T Consensus       151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          151 DIPLFLTSAKNAINVDTAFEEIARSAL  177 (182)
T ss_dssp             SCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence            335999999999999999999988663

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.83  E-value=3.4e-20  Score=166.42  Aligned_cols=163  Identities=14%  Similarity=0.125  Sum_probs=104.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.++|+++|.+|||||||+|+|++..+.  ....+|+.......+..++.  .+.+|||||...+....         
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------   85 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR---------   85 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG---------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh---------
Confidence            346789999999999999999999987743  44445554444444445553  57799999986543211         


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHH
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVA  280 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~  280 (424)
                         ...+..+|++++|+|+++..+  ...+. .|+..+.... ++.|+++|+||+|+....            ....+..
T Consensus        86 ---~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  159 (201)
T 2q3h_A           86 ---PLCYTNTDIFLLCFSVVSPSS--FQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA  159 (201)
T ss_dssp             ---GGGGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred             ---HhhcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence               124677899999999975322  12222 3443333221 258999999999997531            1122233


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..+....+...+++|||++|.|+++++++|.+.+.
T Consensus       160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            44444445546999999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.83  E-value=2.5e-20  Score=165.65  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ..++.++|+++|.+|||||||+|+|++..+.  .....++.......+...+  ..+.+|||||...+..          
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------   84 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----------   84 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC----------------
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH----------
Confidence            3456789999999999999999999987653  3333444443333344444  4589999999754321          


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (424)
                        .....+..+|++++|+|+++..  ....+..|+..+... ...+.|+++|+||+|+... ....+....+....+. +
T Consensus        85 --~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~  158 (190)
T 3con_A           85 --MRDQYMRTGEGFLCVFAINNSK--SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKSYGI-P  158 (190)
T ss_dssp             -------CTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-C
T ss_pred             --HHHHhhCcCCEEEEEEECcCHH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc-cCCHHHHHHHHHHcCC-e
Confidence              1123467789999999997532  222333333333221 1124789999999999763 2222333444443455 4


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++++||++|.|+++++++|.+.+.
T Consensus       159 ~~~~Sa~~~~gi~~l~~~l~~~~~  182 (190)
T 3con_A          159 FIETSAKTRQGVEDAFYTLVREIR  182 (190)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.83  E-value=2.9e-20  Score=168.46  Aligned_cols=164  Identities=15%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+++|.+..+.  .....|+.......+..++  ..+.+|||||...+....          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------   74 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR----------   74 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHH----------
Confidence            35689999999999999999999977653  3333344333333333333  478999999986543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh--------HHHHHHHHhc
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--------LLKVAEQFKH  285 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~--------~~~~~~~~~~  285 (424)
                        ...+..+|++++|+|+++..+  ...+. .|+..+.... ++.|+++|+||+|+......        .......+..
T Consensus        75 --~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~  149 (212)
T 2j0v_A           75 --PLSYRGADIFVLAFSLISKAS--YENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK  149 (212)
T ss_dssp             --CGGGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred             --HhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence              124677899999999975321  12222 3444433221 25899999999999765321        2333444544


Q ss_pred             CCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          286 LPGYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       286 ~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ..+..+++++||++|.|+++++++|.+.+...
T Consensus       150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          150 QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             HHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             HcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence            44555699999999999999999999988653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.83  E-value=4.6e-20  Score=164.83  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=104.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||+|+|++..+....+    |.......+...+..+.+|||||......         ...  
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~--   91 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQDKIRP---------LWR--   91 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-----CT---------THH--
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCCHhHHH---------HHH--
Confidence            467899999999999999999999877643221    22223334556778999999999864321         111  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~  291 (424)
                       ..+..+|++++|+|+++..  ....+..++..+.. ....+.|+++|+||+|+.... ...+..+.+..    ..+ .+
T Consensus        92 -~~~~~~d~iilv~D~~~~~--s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~-~~  166 (192)
T 2b6h_A           92 -HYFQNTQGLIFVVDSNDRE--RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM-PVSELTDKLGLQHLRSRT-WY  166 (192)
T ss_dssp             -HHHHTCCEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCSSCC-EE
T ss_pred             -HHhccCCEEEEEEECCCHH--HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC-CHHHHHHHhCcccccCCc-eE
Confidence             2346789999999997532  22334455554322 112358999999999997642 22233333221    112 25


Q ss_pred             EEEEecCCCcChHHHHHHHHHhcc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +++|||++|.|+++++++|.+.+.
T Consensus       167 ~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          167 VQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             EEECcCCCcCCHHHHHHHHHHHHh
Confidence            899999999999999999998774

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.83  E-value=1.9e-20  Score=166.06  Aligned_cols=166  Identities=19%  Similarity=0.274  Sum_probs=113.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ++..+|+++|++|||||||+|+|++.... ++..+++|.....+.+...+..+.+|||||...+....    ....+...
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~   79 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARD   79 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS----HHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc----HHHHHHHH
Confidence            35689999999999999999999987643 56677778777777777778899999999987653211    01111111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      +.....+|++++|+|+++     ......++..+..   .+.|+++|+||+|+...... ....+.+....+. +++++|
T Consensus        80 ~~~~~~~~~~i~v~d~~~-----~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~~S  149 (188)
T 2wjg_A           80 YIINEKPDLVVNIVDATA-----LERNLYLTLQLME---MGANLLLALNKMDLAKSLGI-EIDVDKLEKILGV-KVVPLS  149 (188)
T ss_dssp             HHHHHCCSEEEEEEEGGG-----HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTC-CCCHHHHHHHHTS-CEEECB
T ss_pred             HHhccCCCEEEEEecchh-----HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccc-hHHHHHHHHHhCC-CeEEEE
Confidence            111135899999999863     2233344444432   24789999999998542110 0112223332344 499999


Q ss_pred             cCCCcChHHHHHHHHHhccCC
Q 014461          297 GLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~  317 (424)
                      |++|.|+++++++|.+.+...
T Consensus       150 a~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          150 AAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             GGGTBSHHHHHHHHHHHHTTC
T ss_pred             ecCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999988654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.9e-20  Score=166.27  Aligned_cols=164  Identities=19%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+...  ...+...........  ....+.+|||||...+.         ... 
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~-   73 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---------AMQ-   73 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---------HHH-
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCChHHhH---------HHH-
Confidence            4578999999999999999999998765421  111211111222222  23468999999976431         111 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|+++..+.. ...+...+...... .++.|+++|+||+|+.... ........+....+. .++
T Consensus        74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~  148 (199)
T 2gf0_A           74 --RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS-VEDIPVMLVGNKCDETQRE-VDTREAQAVAQEWKC-AFM  148 (199)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC-GGGSCEEEEEECTTCSSCS-SCHHHHHHHHHHHTC-EEE
T ss_pred             --HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCCccc-cCHHHHHHHHHHhCC-eEE
Confidence              12356689999999997532111 11233444443211 1247899999999997632 222223333333344 499


Q ss_pred             EEecCCCcChHHHHHHHHHhccCC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ++||++|.|+++++++|.+.+...
T Consensus       149 ~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          149 ETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             EEecCCCCCHHHHHHHHHHHHhhh
Confidence            999999999999999999988543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.83  E-value=9.3e-22  Score=176.70  Aligned_cols=163  Identities=18%  Similarity=0.185  Sum_probs=104.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+.. ...+.++.......+..++  ..+.+|||||........          
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------   99 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT----------   99 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH----------
Confidence            456899999999999999999999876542 2222333333333344444  568999999976543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ...+..+|++++|+|+++.  .....+..|+..+......+.|+++|+||+|+...+.........+....+.. +++
T Consensus       100 --~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~  174 (199)
T 3l0i_B          100 --SSYYRGAHGIIVVYDVTDQ--ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLE  174 (199)
T ss_dssp             --CC--CCCSEEEECC-CCCS--HHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCC
T ss_pred             --HHHhhcCCEEEEEEECCCH--HHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEE
Confidence              1245778999999999763  23334556666665544456899999999999754322222233444455554 899


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||++|.|+++++++|.+.+.
T Consensus       175 vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          175 TSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             CCC---HHHHHHHHHHTTTTT
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.83  E-value=1.9e-20  Score=197.14  Aligned_cols=215  Identities=19%  Similarity=0.269  Sum_probs=144.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceee----------------------------------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH----------------------------------------  176 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~----------------------------------------  176 (424)
                      ...++|+|+|.+|+|||||+|+|+|..+...+..+ +|+.                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            35679999999999999999999997763222221 1111                                        


Q ss_pred             -----------E-EEEEEecCCccEEEEeCCCcccCCC-CCCh---hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch
Q 014461          177 -----------E-VLGVMTKADTQICIFDTPGLMLNKS-GYSH---KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD  240 (424)
Q Consensus       177 -----------~-~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~---~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~  240 (424)
                                 . ...+......++.|+||||+..... ..+.   ......+..++.  ..+|++++|+|++..+...+
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d  205 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD  205 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred             hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence                       1 1112334456799999999986321 1111   122233333332  67899999999987666655


Q ss_pred             H-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH--HhcCCCCCeEEEEecCCCcChHHHHHHHHH---hc
Q 014461          241 S-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ--FKHLPGYERIFMTSGLKGAGLKALTQYLME---QA  314 (424)
Q Consensus       241 ~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~---~l  314 (424)
                      . .+...+...      +.|+++|+||+|+.............  +....++.+++++||++|.|+++|++.|.+   .+
T Consensus       206 ~l~ll~~L~~~------g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ff  279 (772)
T 3zvr_A          206 ALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF  279 (772)
T ss_dssp             HHHHHHHHCTT------CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc------CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhc
Confidence            4 344444322      47899999999998653332222210  001124557899999999999999999987   46


Q ss_pred             cCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCc----------ceEEEEEEEE
Q 014461          315 VQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPY----------SIEHRLIDWK  363 (424)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~----------~~~~~~~~~~  363 (424)
                      +.+|+.   ..++++...+..+|++||++++++.+|+||          ++++.+++|.
T Consensus       280 pe~P~y---d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~  335 (772)
T 3zvr_A          280 LSHPSY---RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYK  335 (772)
T ss_dssp             HHCTTT---GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcch---hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhC
Confidence            666654   556788889999999999999999999999          6666655544

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.83  E-value=9.8e-21  Score=183.89  Aligned_cols=171  Identities=19%  Similarity=0.280  Sum_probs=117.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .+|+++|.+|||||||+|+|++.+.. +++++.+|.....+.+...+ ..+.+|||||+.......     .......+.
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~-----~~l~~~fl~  232 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG-----VGLGHQFLR  232 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT-----TTTHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCccccccc-----chhHHHHHH
Confidence            46999999999999999999987643 57888888887777776665 789999999986432111     111233345


Q ss_pred             hcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          219 AVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      .+..+|++++|+|+++.. ......+..++.++....  ..+.|+++|+||+|+....+....+.+.+..   ..++++|
T Consensus       233 ~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~---~~~v~~i  309 (342)
T 1lnz_A          233 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD---DYPVFPI  309 (342)
T ss_dssp             HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS---CCCBCCC
T ss_pred             HHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc---CCCEEEE
Confidence            566789999999997521 122233333444433222  2358999999999998643333333333221   1358999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      ||++|.|+++|+++|.+.+...+.
T Consensus       310 SA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          310 SAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             ECCCCcCHHHHHHHHHHHHhhCcc
Confidence            999999999999999999876553

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.83  E-value=7.3e-21  Score=171.28  Aligned_cols=164  Identities=20%  Similarity=0.207  Sum_probs=79.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC----CccEEEEeCCCcccCCCCCChhhhhh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA----DTQICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~----~~~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      ...++|+++|.+|||||||+|+|++...........|+. +.....+..+    ...+.+|||||...+           
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------   86 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY-----------   86 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-----------
Confidence            456899999999999999999999872221233333332 2222334444    357999999997532           


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEEecCCCCC-ChhhHHHHHHHHhcCC
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP---PKQKRVLCMNKVDLVT-KKKDLLKVAEQFKHLP  287 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~---~~~p~ilV~NK~Dl~~-~~~~~~~~~~~~~~~~  287 (424)
                       .......+..+|++++|+|++++.  ....+..|+..+.....   .+.|+++|+||+|+.. .+....+....+....
T Consensus        87 -~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~  163 (208)
T 2yc2_C           87 -KEQISQYWNGVYYAILVFDVSSME--SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN  163 (208)
T ss_dssp             -HHHHSTTCCCCCEEEEEEETTCHH--HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT
T ss_pred             -HHHHHHHHhhCcEEEEEEECCCHH--HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc
Confidence             112334578899999999997532  22334455555443322   3589999999999976 3332233344454444


Q ss_pred             CCCeEEEEecCC-CcChHHHHHHHHHhcc
Q 014461          288 GYERIFMTSGLK-GAGLKALTQYLMEQAV  315 (424)
Q Consensus       288 ~~~~~~~iSA~~-g~gi~~L~~~i~~~l~  315 (424)
                      +. +++++||++ |.|+++++++|.+.+.
T Consensus       164 ~~-~~~~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          164 TL-DFFDVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             TC-EEEECCC-------CHHHHHHHHHHH
T ss_pred             CC-EEEEeccCCCCcCHHHHHHHHHHHHH
Confidence            54 599999999 9999999999998763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.82  E-value=8.5e-21  Score=167.14  Aligned_cols=162  Identities=16%  Similarity=0.159  Sum_probs=98.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||++++.+..+.  ....+|+.......  .......+.+|||||...+...           
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   72 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL-----------   72 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTT-----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence            35689999999999999999999976643  22223332211111  1222345679999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh----------HHHHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD----------LLKVAEQF  283 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~----------~~~~~~~~  283 (424)
                       ....+..+|++++|+|+++..+  ...+. .|+..+.... ++.|+++|+||+|+......          ..+....+
T Consensus        73 -~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~  148 (182)
T 3bwd_D           73 -RPLSYRGADVFILAFSLISKAS--YENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL  148 (182)
T ss_dssp             -GGGGGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred             -HHhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence             1134577899999999975321  11222 2333333221 25899999999999765332          22334445


Q ss_pred             hcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       284 ~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ....+..++++|||++|.|+++++++|.+.+.
T Consensus       149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          149 KKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            54456556999999999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=1.8e-20  Score=167.81  Aligned_cols=161  Identities=17%  Similarity=0.170  Sum_probs=103.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|++..+...  ...++.......+..+  ...+.+|||||... .         ... 
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~---------~~~-   92 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQED-T---------IQR-   92 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C---------HHH-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c---------cch-
Confidence            4578999999999999999999998776432  2222222222223333  45689999999864 0         111 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|+++..+  ...+..|+..+... ...+.|+++|+||+|+...+....+....+....+. +++
T Consensus        93 --~~~~~~~d~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  167 (196)
T 2atv_A           93 --EGHMRWGEGFVLVYDITDRGS--FEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFY  167 (196)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEE
T ss_pred             --hhhhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEE
Confidence              123566899999999975321  12222333322211 123589999999999975322222233334333344 599


Q ss_pred             EEecCCCc-ChHHHHHHHHHhcc
Q 014461          294 MTSGLKGA-GLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~-gi~~L~~~i~~~l~  315 (424)
                      ++||++|. |+++++++|.+.+.
T Consensus       168 ~~Sa~~g~~gi~~l~~~l~~~i~  190 (196)
T 2atv_A          168 ECSACTGEGNITEIFYELCREVR  190 (196)
T ss_dssp             ECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             EECCCcCCcCHHHHHHHHHHHHH
Confidence            99999999 99999999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=5.4e-20  Score=167.08  Aligned_cols=165  Identities=15%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++.........+.++.+.....+..++.  .+.+|||+|....         ...+.
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~  105 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH  105 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHH
Confidence            356899999999999999999999755432333333333322233334443  5689999996421         01111


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|+++..  ....+..|...+... ...+.|+++|+||+|+...+....+....+....+. +++
T Consensus       106 --~~~~~~a~~~ilVydvt~~~--sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~  180 (211)
T 2g3y_A          106 --DHCMQVGDAYLIVYSITDRA--SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFI  180 (211)
T ss_dssp             --HCCCCCCSEEEEEEETTCHH--HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred             --HHHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEE
Confidence              23457789999999997532  222333444433221 123589999999999965322222223333333344 499


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +|||++|.||+++|++|.+.+.
T Consensus       181 e~SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          181 ETSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.82  E-value=6.9e-20  Score=164.11  Aligned_cols=168  Identities=14%  Similarity=0.104  Sum_probs=106.6

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe-cCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ...+.++|+++|.+|||||||++++.+............+.......+. .....+.+|||||...+......      .
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~------~   89 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD------Y   89 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC------H
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh------c
Confidence            3446789999999999999999999885433211111222222221122 45578999999998654321100      0


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-------hhHHHHHHHHhc-
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-------KDLLKVAEQFKH-  285 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-------~~~~~~~~~~~~-  285 (424)
                      .   ..+..+|++++|+|+++........+..++.+.... .++.|+++|+||+|+....       .......+.+.. 
T Consensus        90 ~---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~  165 (196)
T 3llu_A           90 E---MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA  165 (196)
T ss_dssp             H---HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             c---cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence            1   234568999999999875333444566777765221 2358999999999987632       111222344554 


Q ss_pred             ---CCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          286 ---LPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       286 ---~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                         ..+. .++++||++ .|++++|+.|.+.+
T Consensus       166 ~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          166 GLEKLHL-SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TCTTSCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhcCCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence               3333 599999999 99999999998765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.82  E-value=1.5e-20  Score=187.28  Aligned_cols=165  Identities=25%  Similarity=0.303  Sum_probs=116.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ...++|+++|.+|+|||||+|+|++..+..++..+++|.+.....+...+. .+.+|||||+..+....     ...+..
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-----~~~~~~  106 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-----RLRVEK  106 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-----CCCHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh-----HHHHHH
Confidence            356899999999999999999999998877788888888776666666555 89999999998653211     122455


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      +...+..+|++++|+|+  ........+..++.+.      +.|+++|+||+|+......  +..+.+.+..+.. ++++
T Consensus       107 ~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~-v~~v  175 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAK-VLLV  175 (423)
T ss_dssp             HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCC-CCCC
T ss_pred             HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCC-EEEE
Confidence            56677889999999998  3344444555666554      4789999999999875433  4556676666664 9999


Q ss_pred             ecCCCcChHHHHHHHHHhccCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ||++|.|+++++++|.+.++..
T Consensus       176 SAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          176 SALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SSCCTTSTTTHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHHHhhhhh
Confidence            9999999999999999999544

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=6.3e-20  Score=165.81  Aligned_cols=163  Identities=13%  Similarity=0.134  Sum_probs=103.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|++..+...  ...++.......+..++  ..+.+|||||.......           
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   89 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL-----------   89 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-----------
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-----------
Confidence            4568999999999999999999998776422  22232222222233333  46899999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA  280 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~  280 (424)
                       ....+..+|++++|+|+++..+...  ..+...+....    ++.|+++|+||+|+......            ..+..
T Consensus        90 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  164 (207)
T 2fv8_A           90 -RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC----PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG  164 (207)
T ss_dssp             -GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred             -HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH
Confidence             1134677899999999975311111  12233333321    35899999999999764211            11122


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ..+....+...++++||++|.|+++++++|.+.+...
T Consensus       165 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          165 RAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             HHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            3333334554699999999999999999999987543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.82  E-value=1.7e-20  Score=166.80  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=104.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.++|+++|.+|||||||+|+|++..+.  .....|+..........+  ...+.+|||||...+..          +
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~   85 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----------C   85 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----------T
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----------H
Confidence            346789999999999999999999987653  333444443332223333  35688999999865421          1


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC---CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA---PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (424)
                      .   ..+..+|++++|+|+++..  ....+..|+..+....   ..+.|+++|+||+|+...+....+....+....+. 
T Consensus        86 ~---~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-  159 (187)
T 3c5c_A           86 E---RYLNWAHAFLVVYSVDSRQ--SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC-  159 (187)
T ss_dssp             H---HHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-
T ss_pred             H---HHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-
Confidence            1   2356789999999997522  2223334444433211   13589999999999965333223334444444455 


Q ss_pred             eEEEEec-CCCcChHHHHHHHHHhcc
Q 014461          291 RIFMTSG-LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       291 ~~~~iSA-~~g~gi~~L~~~i~~~l~  315 (424)
                      .+++||| ++|.|+++++++|.+.+.
T Consensus       160 ~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          160 LFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             EEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             cEEEEeecCccccHHHHHHHHHHHHh
Confidence            5999999 899999999999988763

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.82  E-value=7.8e-20  Score=164.43  Aligned_cols=160  Identities=11%  Similarity=0.118  Sum_probs=103.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|.+..+... ..+.++.... ..+..++  ..+.+|||||.......           
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------   89 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRL-----------   89 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHH-----------
Confidence            3468999999999999999999998766422 1122222211 2233333  47899999997644211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA  280 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~  280 (424)
                       ....+..+|++++|+|+++..+...  ..+...+....    ++.|+++|+||+|+......            ..+..
T Consensus        90 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  164 (201)
T 2gco_A           90 -RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEG  164 (201)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHH
T ss_pred             -HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHH
Confidence             1124678899999999975321111  12233333322    25899999999999865211            11223


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ..+....+...++++||++|.|+++++++|.+.+
T Consensus       165 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          165 RDMANRISAFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3444444554699999999999999999998865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=1.9e-20  Score=189.61  Aligned_cols=166  Identities=23%  Similarity=0.366  Sum_probs=108.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .+...+|+++|.+|||||||+|+|++.+.+.+.+.+++|++.........+..+.+|||||+.......    .......
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~----~~~~~~~   95 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF----LAQIRQQ   95 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CC----HHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHH----HHHHHHH
Confidence            455689999999999999999999999988889999999998888788888899999999986322111    1223334


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      +...+..+|++|+|+|+..+.+..+..+.+++..      .+.|+++|+||+|+......    ..++.. .++..++++
T Consensus        96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~------~~~pvilV~NK~D~~~~~~~----~~e~~~-lg~~~~~~i  164 (456)
T 4dcu_A           96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRAN----IYDFYS-LGFGEPYPI  164 (456)
T ss_dssp             HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT------CCSCEEEEEECC-------------CCSGG-GSSSSEEEC
T ss_pred             HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH------cCCCEEEEEECccchhhhhh----HHHHHH-cCCCceEEe
Confidence            4456778999999999987777766666666654      24789999999998753211    111111 244457899


Q ss_pred             ecCCCcChHHHHHHHHHhccC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ||++|.|+++|++.+.+.++.
T Consensus       165 SA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          165 SGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             CTTTCTTHHHHHHHHHTTGGG
T ss_pred             ecccccchHHHHHHHHhhccc
Confidence            999999999999999988754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.81  E-value=8.4e-21  Score=186.02  Aligned_cols=207  Identities=18%  Similarity=0.254  Sum_probs=126.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcce-----eecCCCC----------------------ceee-------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTH-------------  176 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~-----~~~~~~~----------------------tt~~-------------  176 (424)
                      ...++|+++|.+|||||||+|+|+|.++.     .++..|+                      +|++             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34679999999999999999999998764     2333333                      1111             


Q ss_pred             -----------EEEEEEecCCccEEEEeCCCcccCCCC-CChh---hhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH
Q 014461          177 -----------EVLGVMTKADTQICIFDTPGLMLNKSG-YSHK---DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS  241 (424)
Q Consensus       177 -----------~~~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~---~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~  241 (424)
                                 ...........++.||||||+...... .+..   ....++..++.  ...+++++|+|++..+...+ 
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiL~v~~a~~~~~~~~-  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD-  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT--STTEEEEEEEETTSCGGGCH-
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc--CCCeEEEEEecCCCccchhH-
Confidence                       001112223568999999998753211 0111   11222222221  44567777888865443332 


Q ss_pred             HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHH--hcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461          242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       242 ~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                       +..+++.+..   .+.|+++|+||+|+...........+.-  ....++..++++||++|.|++++++++.+.-   ++
T Consensus       186 -~~~i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~---~~  258 (353)
T 2x2e_A          186 -ALKVAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER---KF  258 (353)
T ss_dssp             -HHHHHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHH---HH
T ss_pred             -HHHHHHHhCc---CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHHH---HH
Confidence             3344555442   2478999999999986433222222210  0012344678899999999999999998732   22


Q ss_pred             CCCCCCcchhhHH---HHHHHHHHHHHHhhcCccCCc
Q 014461          320 SEDPLTMSEEVMK---NISLEVVRERLLDHVHQEIPY  353 (424)
Q Consensus       320 ~~~~~~~~~~~~~---~~~~e~ire~l~~~l~~eip~  353 (424)
                      .++...+++...+   ....+.+|+.+++++.+++||
T Consensus       259 f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~  295 (353)
T 2x2e_A          259 FLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG  295 (353)
T ss_dssp             HHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222233333333   667899999999999999999

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.81  E-value=5.8e-20  Score=162.72  Aligned_cols=162  Identities=14%  Similarity=0.159  Sum_probs=103.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|.+..+.  .....+........+..  ....+.+|||||...+...           
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   71 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-----------   71 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence            35689999999999999999999987653  22222222222222333  3356899999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE  281 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~  281 (424)
                       ....+..+|++++|+|+++..+  ...+ ..|+..+.... ++.|+++|+||+|+....            ....+...
T Consensus        72 -~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  147 (184)
T 1m7b_A           72 -RPLSYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA  147 (184)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred             -HHhhcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence             1124678899999999975321  1222 23333332211 358999999999997431            11122334


Q ss_pred             HHhcCCCCCeEEEEecC-CCcChHHHHHHHHHhcc
Q 014461          282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQAV  315 (424)
Q Consensus       282 ~~~~~~~~~~~~~iSA~-~g~gi~~L~~~i~~~l~  315 (424)
                      .+....+..++++|||+ +|.|++++++.|.+.+.
T Consensus       148 ~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          148 NMAKQIGAATYIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             HHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence            44444454469999999 68999999999988753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.81  E-value=1e-19  Score=164.98  Aligned_cols=161  Identities=15%  Similarity=0.188  Sum_probs=97.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      +.++|+++|.+|||||||+++|++..+.  ...+.++.....  +..+   +..+.+|||||...+         ...+ 
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~---------~~~~-   71 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL---------RFQL-   71 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH---------HHHH-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEE--EEecCCCccEEEEEECCCChhH---------HHHH-
Confidence            4689999999999999999999987754  333333332222  3343   567999999998532         1101 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-c--CCCCCCcEEEEEecCCCCCChh--hHHHHH-HHHh----
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-K--QAPPKQKRVLCMNKVDLVTKKK--DLLKVA-EQFK----  284 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~--~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~-~~~~----  284 (424)
                       ....+..+|++++|+|+++ ..........++.... .  ....+.|+++|+||+|+.....  ...+.+ +.+.    
T Consensus        72 -~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~  149 (214)
T 2fh5_B           72 -LDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV  149 (214)
T ss_dssp             -HHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhc
Confidence             1123678999999999964 1111222333333211 0  1123589999999999976421  111111 1111    


Q ss_pred             ---------------c-CCC-------------CCeEEEEecCCC------cChHHHHHHHHHhc
Q 014461          285 ---------------H-LPG-------------YERIFMTSGLKG------AGLKALTQYLMEQA  314 (424)
Q Consensus       285 ---------------~-~~~-------------~~~~~~iSA~~g------~gi~~L~~~i~~~l  314 (424)
                                     . ..+             ...+++|||++|      .||++++++|.+.+
T Consensus       150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                           1 111             335999999999      99999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.81  E-value=1.2e-19  Score=162.30  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=99.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|.+|||||||+|+|++......+..+.++.+.....+..++.  .+.+|||+|........     .     
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~-----~-----   74 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL-----H-----   74 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT-----G-----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH-----H-----
Confidence            45899999999999999999999644322333333333332233334443  56799999975421101     0     


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ...+..+|++++|+|+++..  ....+..|+..+... ...+.|+++|+||+|+...+.........+....+. .+++
T Consensus        75 -~~~~~~~~~~i~v~dv~~~~--s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e  150 (192)
T 2cjw_A           75 -DHCMQVGDAYLIVYSITDRA--SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIE  150 (192)
T ss_dssp             -GGHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             -HhhcccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEE
Confidence             11235579999999997532  122233333322211 123579999999999965322222233334333344 5999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      |||++|.||+++|++|.+.+.
T Consensus       151 ~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          151 TSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             eccccCCCHHHHHHHHHHHHH
Confidence            999999999999999998774

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.80  E-value=6.9e-19  Score=155.94  Aligned_cols=164  Identities=16%  Similarity=0.183  Sum_probs=102.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh---hhhhhHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVESA  216 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~---~~~~~~~~~~  216 (424)
                      ++|+++|.+|||||||+|+|++..+. .+..+++|........  .  .+.+|||||+..... ...   ..........
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMG-LPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTT-SCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEec--C--CEEEEECCCcccccc-CCHHHHHHHHHHHHHH
Confidence            57999999999999999999988754 4555666655443322  2  789999999753221 111   1112222233


Q ss_pred             Hhh-cccccEEEEEEeCCCCCCCchHHHH---------HHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461          217 WSA-VNLFEVLMVVFDVHRHLTSPDSRVI---------RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (424)
Q Consensus       217 ~~~-~~~aD~vl~VvD~~~~~~~~~~~~~---------~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~  286 (424)
                      +.. ...++++++|+|.+.. ......+.         +.+.....   .+.|+++|+||+|+....   .+..+.+...
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~---~~~~~~~~~~  148 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAA-PEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV---QEVINFLAEK  148 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHH-HHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH---HHHHHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchhh-hhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCcH---HHHHHHHHHH
Confidence            333 5567788888887421 00000110         11121111   247899999999998753   2223333333


Q ss_pred             CCCC------eEEEEecCCCcChHHHHHHHHHhccC
Q 014461          287 PGYE------RIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       287 ~~~~------~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      .+..      .++++||++|.|+++++++|.+.+..
T Consensus       149 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          149 FEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             HTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            3332      48999999999999999999988754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.80  E-value=1.1e-19  Score=164.31  Aligned_cols=161  Identities=14%  Similarity=0.153  Sum_probs=103.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...++|+++|.+|||||||+|+|.+..+.  .....|........+..+  ...+.+|||||...+...           
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------   92 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-----------   92 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT-----------
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH-----------
Confidence            45689999999999999999999987664  222222222222223333  356899999998654211           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE  281 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~  281 (424)
                       ....+..+|++++|+|+++..+  ...+ ..|+..+.... ++.|+++|+||+|+....            ....+...
T Consensus        93 -~~~~~~~~d~~ilv~D~~~~~s--~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  168 (205)
T 1gwn_A           93 -RPLSYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA  168 (205)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred             -HHhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence             1124678899999999975321  1222 23433332221 358999999999997431            11122234


Q ss_pred             HHhcCCCCCeEEEEecC-CCcChHHHHHHHHHhc
Q 014461          282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQA  314 (424)
Q Consensus       282 ~~~~~~~~~~~~~iSA~-~g~gi~~L~~~i~~~l  314 (424)
                      .+....+...+++|||+ +|.|++++++.|.+.+
T Consensus       169 ~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          169 NMAKQIGAATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            44444444469999999 6899999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.80  E-value=7.9e-19  Score=170.21  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=105.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.++|+++|.+|||||||+|+|.+..+....  +  |.......+...+..+.+|||||...+..         ...   
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~---  227 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWR---  227 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-----CC---------SHH---
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc--c--ccceEEEEEecCcEEEEEEECCCCHhHHH---------HHH---
Confidence            4569999999999999999999988764322  2  33344445667788999999999754421         111   


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CCCeEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIF  293 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~  293 (424)
                      ..+..+|++|+|+|+++..+  ...+..++..+ ......+.|+++|+||+|+.... ...+....+....   ...+++
T Consensus       228 ~~~~~ad~vilV~D~~~~~s--~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~  304 (329)
T 3o47_A          228 HYFQNTQGLIFVVDSNDRER--VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQ  304 (329)
T ss_dssp             HHHTTEEEEEEEEETTCSSS--HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEE
T ss_pred             HHhccCCEEEEEEECCchHH--HHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEE
Confidence            23567899999999975432  22333333332 22222358999999999998642 2333333333221   122589


Q ss_pred             EEecCCCcChHHHHHHHHHhccC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++||++|.||++++++|.+.+..
T Consensus       305 ~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          305 ATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             EEECCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999999988753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.79  E-value=2.5e-20  Score=176.60  Aligned_cols=159  Identities=24%  Similarity=0.367  Sum_probs=107.6

Q ss_pred             ChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcCC
Q 014461           23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERTD   85 (424)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~~   85 (424)
                      .+||-|||.++..|...  .+..+|+++++.|||.|.++ ++                |+||++.+..+.|..++.+.+.
T Consensus         3 i~w~PGhm~ka~~~~~~--~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~   80 (282)
T 1puj_A            3 IQWFPGHMAKARREVTE--KLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI   80 (282)
T ss_dssp             ------CTTHHHHHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTC
T ss_pred             CcCCchHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCC
Confidence            36778889888888877  77889999999999999998 53                6699988888899999988888


Q ss_pred             eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461           86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (424)
Q Consensus        86 ~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~  164 (424)
                      .+++.++ ++.|..++          .....+++....+.     ...+.......+|+++|.||||||||+|+|.+...
T Consensus        81 ~~i~iSA~~~~gi~~L----------~~~i~~~l~~~~~~-----~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A           81 RSLSINSVNGQGLNQI----------VPASKEILQEKFDR-----MRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CEEECCTTTCTTGGGH----------HHHHHHHHHHHHHH-----HHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             cEEEEECCCcccHHHH----------HHHHHHHHHHHHHH-----HHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce
Confidence            8888888 88888877          22222223222111     01122245678999999999999999999999988


Q ss_pred             eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       165 ~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      +.+++.+++|+......  . +..+.++||||+..+.
T Consensus       146 ~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          146 AKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPK  179 (282)
T ss_dssp             C------------CCEE--E-TTTEEEEECCCCCCSC
T ss_pred             eecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCC
Confidence            88999999998764322  2 4579999999998653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.79  E-value=1.3e-18  Score=168.18  Aligned_cols=164  Identities=14%  Similarity=0.152  Sum_probs=110.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCcc--EEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ--ICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ....++|+++|.+|+|||||++++++..+.  .....|+.......+..++..  +.+|||||...+...          
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------  219 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL----------  219 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT----------
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH----------
Confidence            345789999999999999999999977653  444555555554445555544  559999998654211          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHH
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVA  280 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~  280 (424)
                        ....+..+|++++|+|+++..+.  ..+. .|+..+.... ++.|+++|+||+|+.....            ......
T Consensus       220 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  294 (332)
T 2wkq_A          220 --RPLSYPQTDVFLICFSLVSPASF--HHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG  294 (332)
T ss_dssp             --GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred             --HHHhccCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence              11346789999999999753221  1221 2333322211 2589999999999965421            112233


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ..+....+..++++|||++|.|+++++++|.+.+..
T Consensus       295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            444545566569999999999999999999987743

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.79  E-value=8.8e-19  Score=168.31  Aligned_cols=168  Identities=18%  Similarity=0.198  Sum_probs=117.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ...+|+++|.+|||||||+|++++.....++..+++|.....+.+.. ++..+.+|||||...+.     ...  .....
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~--~~~~~   74 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM-----ENY--FTKQK   74 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH-----HHH--HTTTH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh-----hhh--hhhHH
Confidence            35799999999999999999999875555666778887776666553 56789999999976430     000  00111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCC--Chh----hHHHHHHHHhcCCCC
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKK----DLLKVAEQFKHLPGY  289 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~--~~~----~~~~~~~~~~~~~~~  289 (424)
                      ...+..+|++++|+|+++..+.... .+..++..+... .++.|+++|+||+|+..  .+.    ......+.+....++
T Consensus        75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~  153 (307)
T 3r7w_A           75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF  153 (307)
T ss_dssp             HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            2335678999999999764322221 334445544322 23589999999999987  222    333556667777774


Q ss_pred             --CeEEEEecCCCcChHHHHHHHHHhc
Q 014461          290 --ERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       290 --~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                        .+++++||++ .|+.+++..+...+
T Consensus       154 ~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          154 PNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             CSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             CCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence              5799999999 88999998888765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.65  E-value=1.2e-20  Score=170.06  Aligned_cols=162  Identities=13%  Similarity=0.143  Sum_probs=103.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+++|++..+.  .....++.......+..  ....+.+|||||...+..            
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR------------   93 (204)
Confidence            35689999999999999999999976653  23333333332222223  334567999999764321            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ  282 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~  282 (424)
                      .....+..+|++++|+|+++..+.... ...|+..+.... ++.|+++|+||+|+.....            ...+....
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  171 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  171 (204)
Confidence            111235678999999999764332221 113333332221 2578999999999976421            11122333


Q ss_pred             HhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +....+..++++|||++|.|+++++++|.+.+
T Consensus       172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            44444553589999999999999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.77  E-value=1.2e-18  Score=154.43  Aligned_cols=165  Identities=13%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEe-----cCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMT-----KADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~-----~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      .++|+++|.+|||||||+|+|.+......+....|. .+.....+.     .....+.+|||||...+...         
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------   72 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST---------   72 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT---------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh---------
Confidence            368999999999999999999985322122222221 121111111     23567899999997643211         


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH---HHHHHHHhcCCCC
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGY  289 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~---~~~~~~~~~~~~~  289 (424)
                      ..   ..+..+|++++|+|.+++.. ....+..|+.++.... ++.|+++|+||+|+.......   ....+.+....++
T Consensus        73 ~~---~~~~~~~~~i~v~d~~~~~~-s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  147 (184)
T 2zej_A           73 HP---HFMTQRALYLAVYDLSKGQA-EVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF  147 (184)
T ss_dssp             SH---HHHHHSEEEEEEEEGGGCHH-HHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred             hH---HHccCCcEEEEEEeCCcchh-HHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence            11   12456799999999975311 1223445555443221 358999999999997642211   2334556655566


Q ss_pred             C---eEEEEecCCCc-ChHHHHHHHHHhccCC
Q 014461          290 E---RIFMTSGLKGA-GLKALTQYLMEQAVQR  317 (424)
Q Consensus       290 ~---~~~~iSA~~g~-gi~~L~~~i~~~l~~~  317 (424)
                      .   .++++||++|. |+++|++.|.+.+...
T Consensus       148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          148 PAIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             cchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence            4   48999999996 9999999999887643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.77  E-value=8.6e-19  Score=179.63  Aligned_cols=117  Identities=19%  Similarity=0.269  Sum_probs=82.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcce---------------eec------CCCCceeeEEEEEEecCCccEEEEeCCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVS------RKTNTTTHEVLGVMTKADTQICIFDTPG  196 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~------~~~~tt~~~~~~~~~~~~~~i~l~DtpG  196 (424)
                      +..+|+++|++|+|||||+|+|++....               .+.      ...+.|.......+.+.+..+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            5689999999999999999999621100               011      1133444444445667889999999999


Q ss_pred             cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      +.++.            ..+...+..+|++|+|+|++++.......++..+...      +.|+++|+||+|+...
T Consensus        92 ~~df~------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~------~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           92 HADFT------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR------HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             STTCC------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT------TCCEEEEEECTTSCCS
T ss_pred             chhHH------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCccc
Confidence            87542            2244567789999999999887665555555444432      4789999999999753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.77  E-value=5.3e-18  Score=170.62  Aligned_cols=154  Identities=21%  Similarity=0.228  Sum_probs=103.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee------------------------------ecCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------------------------VSRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~  186 (424)
                      ....+|+++|++|+|||||+|+|++.....                              .....++|.+.....+...+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            456899999999999999999996532111                              11224667776666677788


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      .++.+|||||+..+            ...+...+..+|++++|+|++++..       .........+...      +.|
T Consensus        95 ~~~~iiDTPGh~~f------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~  156 (439)
T 3j2k_7           95 KHFTILDAPGHKSF------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVK  156 (439)
T ss_pred             eEEEEEECCChHHH------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCC
Confidence            89999999997543            3344455678999999999987643       2233333334433      255


Q ss_pred             -EEEEEecCCCCCC---hh---hHHHHHHHHhcCCCC-----CeEEEEecCCCcChHHHHH
Q 014461          260 -RVLCMNKVDLVTK---KK---DLLKVAEQFKHLPGY-----ERIFMTSGLKGAGLKALTQ  308 (424)
Q Consensus       260 -~ilV~NK~Dl~~~---~~---~~~~~~~~~~~~~~~-----~~~~~iSA~~g~gi~~L~~  308 (424)
                       +++|+||+|+...   ..   .+.+....+....++     .+++++||++|.|++++.+
T Consensus       157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             8999999999642   11   122222333333333     3599999999999999654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.77  E-value=1.9e-18  Score=172.30  Aligned_cols=164  Identities=19%  Similarity=0.249  Sum_probs=104.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE------EEE--------E-----ecCCccEEEEeCCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV------LGV--------M-----TKADTQICIFDTPG  196 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~------~~~--------~-----~~~~~~i~l~DtpG  196 (424)
                      ....++|+++|++|+|||||+|+|++...........++....      ...        .     ......+.+|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            4567899999999999999999999853321111111110000      000        0     00115789999999


Q ss_pred             cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh
Q 014461          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD  275 (424)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~  275 (424)
                      +..+            .......+..+|++++|+|++++. ..........+...+     ..|+++|+||+|+.+.. .
T Consensus        85 h~~~------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~-~  146 (403)
T 3sjy_A           85 HEVL------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKE-E  146 (403)
T ss_dssp             CGGG------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHH-H
T ss_pred             cHHH------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchH-H
Confidence            7533            334445667899999999998765 222334444555443     24799999999998742 2


Q ss_pred             HHHHH---HHHhcCCC--CCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          276 LLKVA---EQFKHLPG--YERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       276 ~~~~~---~~~~~~~~--~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      .....   ..+....+  ..+++++||++|.|+++|+++|.+.++..
T Consensus       147 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          147 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            22222   22222211  23599999999999999999999987543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.76  E-value=1.6e-18  Score=176.28  Aligned_cols=161  Identities=16%  Similarity=0.274  Sum_probs=107.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc----c--eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhh
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK----V--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV  209 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~----~--~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~  209 (424)
                      .++.++|+++|++|+|||||+|+|++..    .  ...+...++|.+.....+..++..+.+|||||+..+         
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~---------   86 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL---------   86 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH---------
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH---------
Confidence            3567899999999999999999999866    1  112334455555443345557789999999997432         


Q ss_pred             hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH---HHHHHHhcC
Q 014461          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL---KVAEQFKHL  286 (424)
Q Consensus       210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~---~~~~~~~~~  286 (424)
                         .......+..+|++++|+|++++........+.++...      +.|.++|+||+|+.+. ....   +.+..+...
T Consensus        87 ---~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~-~~~~~~~~~l~~~l~~  156 (482)
T 1wb1_A           87 ---IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF------NIPIIVVITKSDNAGT-EEIKRTEMIMKSILQS  156 (482)
T ss_dssp             ---HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT------TCCBCEEEECTTSSCH-HHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc------CCCEEEEEECCCcccc-hhHHHHHHHHHHHHhh
Confidence               34445567889999999999876655444555555543      3678999999999863 2222   222222221


Q ss_pred             C-C--CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          287 P-G--YERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       287 ~-~--~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      . +  ..+++++||++|.|+++|+++|.+.++
T Consensus       157 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          157 THNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            1 1  235999999999999999999998764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.76  E-value=7.4e-20  Score=185.15  Aligned_cols=150  Identities=17%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc--ce----------------------eecC------CCCceeeEEEEEEecCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------AVSR------KTNTTTHEVLGVMTKADT  187 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~--~~----------------------~~~~------~~~tt~~~~~~~~~~~~~  187 (424)
                      ..++|+++|++|+|||||+|+|++..  +.                      .+.+      ..+.|.+.....+...+.
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~   85 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence            46899999999999999999998531  10                      0001      134555444444566778


Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC-------chHHHHHHHHHhccCCCCCCc-
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQK-  259 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~-------~~~~~~~~l~~~~~~~~~~~p-  259 (424)
                      ++.+|||||+..+            .......+..+|++++|+|++++...       ........+...      +.| 
T Consensus        86 ~~~iiDtPGh~~f------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~  147 (458)
T 1f60_A           86 QVTVIDAPGHRDF------------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQ  147 (458)
T ss_dssp             EEEEEECCCCTTH------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCE
T ss_pred             eEEEEECCCcHHH------------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCe
Confidence            8999999997532            33455667899999999999753211       122222233322      244 


Q ss_pred             EEEEEecCCCCCC-hhhH---HHHHHHHhcCCCC----CeEEEEecCCCcChHH
Q 014461          260 RVLCMNKVDLVTK-KKDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKA  305 (424)
Q Consensus       260 ~ilV~NK~Dl~~~-~~~~---~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~  305 (424)
                      +++|+||+|+... ...+   .+.+..+....++    .+++++||++|.|+++
T Consensus       148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            8999999999842 2222   2223333222332    3699999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=170.43  Aligned_cols=189  Identities=15%  Similarity=0.233  Sum_probs=113.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCcee-------------------------eEEEEE----
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------------------------HEVLGV----  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~-------------------------~~~~~~----  181 (424)
                      .....|+++|+||||||||+|+|++      .++......+++..                         ....+.    
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            4478999999999999999999986      33333333332221                         000000    


Q ss_pred             ----------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc
Q 014461          182 ----------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG  251 (424)
Q Consensus       182 ----------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~  251 (424)
                                +...+.++.++||||+..+.               ......+|++++|+|++.+...  ..+..   .+.
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---------------~~l~~~~d~vl~V~d~~~~~~~--~~i~~---~il  211 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---------------FAVADMVDMFVLLLPPAGGDEL--QGIKR---GII  211 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--CH---------------HHHHTTCSEEEEEECCC-----------------C
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchhh---------------hhHHhhCCEEEEEEcCCcchhH--HHhHH---HHH
Confidence                      11356789999999975320               0113568999999999653211  11111   111


Q ss_pred             cCCCCCCcEEEEEecCCCCCChhhHHHHHHHH----hcCC-----CCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461          252 KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF----KHLP-----GYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       252 ~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~-----~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                           ..|.++|+||+|+... .........+    ....     ..++++++||++|.|+++|+++|.+.+..   .++
T Consensus       212 -----~~~~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~  282 (349)
T 2www_A          212 -----EMADLVAVTKSDGDLI-VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLA  282 (349)
T ss_dssp             -----CSCSEEEECCCSGGGH-HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHH
T ss_pred             -----hcCCEEEEeeecCCCc-hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---Hhh
Confidence                 2578999999999742 1111112222    2111     13468999999999999999999987743   122


Q ss_pred             CCCcchh---hHHHHHHHHHHHHHHhhcCccCCcc
Q 014461          323 PLTMSEE---VMKNISLEVVRERLLDHVHQEIPYS  354 (424)
Q Consensus       323 ~~~~~~~---~~~~~~~e~ire~l~~~l~~eip~~  354 (424)
                      ...+++.   ...+++.+.++++++..+.+++|+.
T Consensus       283 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (349)
T 2www_A          283 SGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVR  317 (349)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence            2333333   4556678999999999888888764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=154.47  Aligned_cols=174  Identities=16%  Similarity=0.188  Sum_probs=105.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCC--CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~--~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ....++|+++|.+|||||||+|+|++..... +..+  ++|...........+..+.+|||||+.....  ........+
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~--~~~~~~~~~  102 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV--PNAETSKEI  102 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-------CHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC--CHHHHHHHH
Confidence            3457899999999999999999999987743 3333  5666666666777888999999999875431  111122222


Q ss_pred             H-HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH-------HHHHHHhc
Q 014461          214 E-SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-------KVAEQFKH  285 (424)
Q Consensus       214 ~-~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~-------~~~~~~~~  285 (424)
                      . ........+|++|+|+|+++ .+..+..+..++.+..... ...|+++|+||+|+.... .+.       +.++.+.+
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHHH
Confidence            2 23334567899999999963 4444444444443221110 125899999999987642 111       12233333


Q ss_pred             CCCCCeEEEEecCCC-----cChHHHHHHHHHhccC
Q 014461          286 LPGYERIFMTSGLKG-----AGLKALTQYLMEQAVQ  316 (424)
Q Consensus       286 ~~~~~~~~~iSA~~g-----~gi~~L~~~i~~~l~~  316 (424)
                      ..+.. ++.+++..+     .|+.+|++.+.+.+..
T Consensus       180 ~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            33333 667766643     6899999999887754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.74  E-value=2.5e-17  Score=164.56  Aligned_cols=165  Identities=16%  Similarity=0.277  Sum_probs=106.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEec------------------C-----CccEE
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTK------------------A-----DTQIC  190 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~------------------~-----~~~i~  190 (424)
                      ....++|+++|++|+|||||+++|++.....  .....+.|..........                  +     ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            3456899999999999999999999753221  112234444322111111                  0     15799


Q ss_pred             EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCC
Q 014461          191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL  269 (424)
Q Consensus       191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl  269 (424)
                      +|||||+..+            .......+..+|++++|+|++++. .......+..+..++     ..|+++|+||+|+
T Consensus        87 iiDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl  149 (410)
T 1kk1_A           87 FIDAPGHEAL------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIEL  149 (410)
T ss_dssp             EEECSSHHHH------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGG
T ss_pred             EEECCChHHH------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccC
Confidence            9999997432            334455677889999999998764 223333334444443     2479999999999


Q ss_pred             CCChh--hHHHHHHHHhcC--CCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          270 VTKKK--DLLKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       270 ~~~~~--~~~~~~~~~~~~--~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      .....  ...+.+..+...  ....+++++||++|.|+++|+++|.+.++..
T Consensus       150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            87421  112222333322  1223699999999999999999999987643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.74  E-value=6.6e-17  Score=145.87  Aligned_cols=174  Identities=20%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~  213 (424)
                      ...+.+|+++|++|||||||+|+|++.. ...+.+.+++|.....  +...+ .+.+|||||+........ .......+
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            3467899999999999999999999876 3444566666654322  22223 788999999864211000 01111222


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCC-CC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPG-YE  290 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~-~~  290 (424)
                      ...+.....+|.+++++|++.+....+..+..++...      +.|+++|.||+|+....+  ........+....+ ..
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3333334678999999999876544334455555543      378999999999976421  11222333332222 34


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      .++++||+++.|+++++++|.+.+..++
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~~~~  201 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFSEMQ  201 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence            5899999999999999999998876543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.73  E-value=7.2e-18  Score=168.18  Aligned_cols=162  Identities=18%  Similarity=0.170  Sum_probs=109.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC--------cceee--c------CCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT--------KVAAV--S------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~--------~~~~~--~------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      ...++|+++|++|+|||||+|+|++.        .+...  .      ...+.|.......+...+..+.+|||||+..+
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45689999999999999999999873        11000  0      12344555444445666789999999998643


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---  276 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~---  276 (424)
                                  .......+..+|++++|+|++++.......++..+...      +.| +++|+||+|+.......   
T Consensus        89 ------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~  150 (405)
T 2c78_A           89 ------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLV  150 (405)
T ss_dssp             ------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHH
T ss_pred             ------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHH
Confidence                        23344556789999999999876554444444444443      367 88999999998532222   


Q ss_pred             HHHHHHHhcCCCC----CeEEEEecCCCcC------------------hHHHHHHHHHhccC
Q 014461          277 LKVAEQFKHLPGY----ERIFMTSGLKGAG------------------LKALTQYLMEQAVQ  316 (424)
Q Consensus       277 ~~~~~~~~~~~~~----~~~~~iSA~~g~g------------------i~~L~~~i~~~l~~  316 (424)
                      ......+....++    .+++++||++|.|                  +++|++.|.+.++.
T Consensus       151 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          151 EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            2223333333332    4699999999987                  88999999888764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.73  E-value=5.7e-17  Score=161.78  Aligned_cols=164  Identities=17%  Similarity=0.242  Sum_probs=98.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEEEEec---------------C--------CccEEE
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTK---------------A--------DTQICI  191 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~---------------~--------~~~i~l  191 (424)
                      ...++|+++|++++|||||+++|++......  ...++.|..........               .        ...+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            3568999999999999999999997542211  11233344322111100               1        157999


Q ss_pred             EeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      |||||+..+            .......+..+|++++|+|++++. .......+..+..++     ..|+++|+||+|+.
T Consensus        86 iDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~-----~~~iivv~NK~Dl~  148 (408)
T 1s0u_A           86 VDSPGHETL------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG-----IDKIIIVQNKIDLV  148 (408)
T ss_dssp             EECSSHHHH------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEECTTSS
T ss_pred             EECCCHHHH------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC-----CCeEEEEEEccCCC
Confidence            999997432            334455677889999999998764 222233333444332     24799999999997


Q ss_pred             CChh--hHHHHHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          271 TKKK--DLLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       271 ~~~~--~~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ....  ...+.+..+....  ...+++++||++|.|+++|+++|.+.++..
T Consensus       149 ~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          149 DEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             CTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            6432  2222333333321  223599999999999999999999987643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.73  E-value=1.9e-17  Score=156.47  Aligned_cols=169  Identities=15%  Similarity=0.187  Sum_probs=89.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCC-Chh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGY-SHK  207 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~-~~~  207 (424)
                      ..++|+++|.+|+|||||+|+|++........       .+.++.......+..++.  .+.+|||||+....... ...
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            35899999999999999999999877654332       222233333333444443  79999999986542211 111


Q ss_pred             hhh----hHHHHHHhh----------cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          208 DVK----VRVESAWSA----------VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       208 ~~~----~~~~~~~~~----------~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      .+.    ..+..++..          -..+|+++++++.+. +....+..+.   +.+..    +.|+++|+||+|+...
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l---~~l~~----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM---KRLHE----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHH---HHHTT----TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHH---HHHhc----cCCEEEEEeccCCCCH
Confidence            111    111222221          123678999997654 3444343443   43332    4789999999999764


Q ss_pred             hhhHHHH----HHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          273 KKDLLKV----AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       273 ~~~~~~~----~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                       ......    .+.+. ..+.. ++++||++|.|+++++++|.+.++.
T Consensus       160 -~e~~~~~~~i~~~l~-~~~i~-v~~~sa~~~~~~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          160 -EECQQFKKQIMKEIQ-EHKIK-IYEFPETDDEEENKLVKKIKDRLPL  204 (274)
T ss_dssp             -HHHHHHHHHHHHHHH-HTTCC-CCCC-----------CHHHHHTCSE
T ss_pred             -HHHHHHHHHHHHHHH-HcCCe-EEcCCCCCChhHHHHHHHHhcCCCc
Confidence             223222    22222 23443 8889999999999999999988754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.73  E-value=5.4e-19  Score=180.54  Aligned_cols=161  Identities=20%  Similarity=0.235  Sum_probs=109.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ++.++|+++|++|+|||||+|+|.+..+.. ...+++|.+.....+.. .+..+.||||||+..+....           
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~-----------   69 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR-----------   69 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH-----------
Confidence            356889999999999999999999877653 34555665543333333 56689999999986553211           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHh---cCC-CCC
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFK---HLP-GYE  290 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~---~~~-~~~  290 (424)
                       ...+..+|++++|+|++++........+..+...      +.|+++|+||+|+.... .........+.   ..+ +..
T Consensus        70 -~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~------~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~  142 (537)
T 3izy_P           70 -ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDA------HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV  142 (537)
T ss_dssp             -BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT------TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred             -HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHc------CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence             1345778999999999876554444444444332      47899999999997532 11111122221   111 223


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhccC
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +++++||++|.|+++|+++|...+..
T Consensus       143 ~iv~vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          143 QAVHVSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCchhHHHHHHHhhhc
Confidence            69999999999999999999987653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.73  E-value=2.4e-17  Score=147.77  Aligned_cols=161  Identities=18%  Similarity=0.199  Sum_probs=103.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .++|+++|++|||||||+++|.+..+..... +..+.....+.+..++  ..+.+|||||.......         ..  
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~---------~~--   72 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI---------TS--   72 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC---------CH--
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCchhhhhh---------hH--
Confidence            5789999999999999999999876643222 2222222333344444  35678999997654211         11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                       ..+..+|++++|+|+++..+  ...+..|+..+........|+++|+||+|+.............+....+. .++.+|
T Consensus        73 -~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~S  148 (199)
T 2f9l_A           73 -AYYRGAVGALLVYDIAKHLT--YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETS  148 (199)
T ss_dssp             -HHHTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             -HHHhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEEe
Confidence             12346799999999965322  12223344333222223578999999999965322222334445544555 489999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |+++.|+++++++|.+.+.
T Consensus       149 al~~~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          149 ALDSTNVEEAFKNILTEIY  167 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.2e-17  Score=174.17  Aligned_cols=153  Identities=17%  Similarity=0.225  Sum_probs=102.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecC------------------------------CCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR------------------------------KTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~------------------------------~~~tt~~~~~~~~~~~~  186 (424)
                      ...++|+++|++|+|||||+|+|++........                              ..++|.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999998753321111                              14666666555667788


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      .++.||||||+..+            ...+...+..+|++|+|+|++.+       ...........+...+     ..|
T Consensus       245 ~~~~iiDTPG~e~f------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-----i~~  307 (611)
T 3izq_1          245 ANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHN  307 (611)
T ss_dssp             CEEEEEECCSSSCH------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----CCE
T ss_pred             ceEEEEECCCCccc------------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----CCe
Confidence            89999999998542            45556678899999999999753       1222223333333322     245


Q ss_pred             EEEEEecCCCCCChh-hH---HHHHHHHhcCCC----CCeEEEEecCCCcChHHH
Q 014461          260 RVLCMNKVDLVTKKK-DL---LKVAEQFKHLPG----YERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       260 ~ilV~NK~Dl~~~~~-~~---~~~~~~~~~~~~----~~~~~~iSA~~g~gi~~L  306 (424)
                      +|+|+||+|+..... ..   ...+..+....+    ..++++|||++|.|++++
T Consensus       308 iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          308 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             EEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            999999999986321 11   222222222122    236999999999999865

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.73  E-value=3.1e-17  Score=161.16  Aligned_cols=145  Identities=15%  Similarity=0.173  Sum_probs=103.6

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|++|+|||||+++|+         ..+.|.+.....+...+.++.+|||||+.++            .......+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f------------~~~~~~~~   81 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT------------LKSLITAL   81 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC------------HHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH------------HHHHHHHH
Confidence            89999999999999999998         2234444444456677888999999998653            23334456


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEe-cCCCCCChhhHH---HHHHHHhcCCC--CCeEE
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMN-KVDLVTKKKDLL---KVAEQFKHLPG--YERIF  293 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~N-K~Dl~~~~~~~~---~~~~~~~~~~~--~~~~~  293 (424)
                      ..+|++++|+| +.+...........+...+      .|. ++|+| |+|+ .. ....   +.++.+....+  ..+++
T Consensus        82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~------i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii  152 (370)
T 2elf_A           82 NISDIAVLCIP-PQGLDAHTGECIIALDLLG------FKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECI  152 (370)
T ss_dssp             HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTT------CCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEE
T ss_pred             HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcC------CCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEE
Confidence            78999999999 7665544444545555443      566 89999 9999 43 2222   23334433332  24699


Q ss_pred             E--EecCC---CcChHHHHHHHHHhcc
Q 014461          294 M--TSGLK---GAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~--iSA~~---g~gi~~L~~~i~~~l~  315 (424)
                      +  +||++   |.|+++|++.|.+.++
T Consensus       153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          153 SLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             ECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             ecccccccCcCCCCHHHHHHHHHhhcc
Confidence            9  99999   9999999999998774

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.73  E-value=2.3e-17  Score=171.00  Aligned_cols=160  Identities=19%  Similarity=0.202  Sum_probs=99.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCccee--------ecC------CCCceeeEEEEEEecC-----CccEEEEeCCCcc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA--------VSR------KTNTTTHEVLGVMTKA-----DTQICIFDTPGLM  198 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~--------~~~------~~~tt~~~~~~~~~~~-----~~~i~l~DtpG~~  198 (424)
                      +..+|+++|++|+|||||+++|+......        +.+      ..+.|.......+.+.     +..+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35789999999999999999998522110        001      1233332222222221     3578999999986


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~  278 (424)
                      ++.         ..+.   ..+..+|++++|+|++++........+......      +.|+++|+||+|+....  ...
T Consensus        83 dF~---------~ev~---~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~------~ipiIvViNKiDl~~a~--~~~  142 (599)
T 3cb4_D           83 DFS---------YEVS---RSLAACEGALLVVDAGQGVEAQTLANCYTAMEM------DLEVVPVLNKIDLPAAD--PER  142 (599)
T ss_dssp             GGH---------HHHH---HHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT------TCEEEEEEECTTSTTCC--HHH
T ss_pred             HHH---------HHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEeeeccCccccc--HHH
Confidence            541         2222   345678999999999887665544333333222      47899999999998642  333


Q ss_pred             HHHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          279 VAEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       279 ~~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ..+++.+..+.  .+++++||++|.|+++|+++|.+.++..
T Consensus       143 v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          143 VAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             HHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence            34444443343  2589999999999999999999998653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.73  E-value=2.1e-17  Score=170.92  Aligned_cols=160  Identities=17%  Similarity=0.224  Sum_probs=102.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCccee--------ecC------CCCceeeEEEEEEec---C--CccEEEEeCCCcc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA--------VSR------KTNTTTHEVLGVMTK---A--DTQICIFDTPGLM  198 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~--------~~~------~~~tt~~~~~~~~~~---~--~~~i~l~DtpG~~  198 (424)
                      +..+|+++|++|+|||||+++|+......        +.+      ..+.|.......+.+   +  ...+.||||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            46789999999999999999997521110        001      112222211111211   2  2578899999987


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~  278 (424)
                      ++.         ..+.   ..+..+|++++|+|++++........+......      +.|+++|+||+|+...  ....
T Consensus        85 dF~---------~ev~---r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~------~ipiIvviNKiDl~~a--~~~~  144 (600)
T 2ywe_A           85 DFS---------YEVS---RALAACEGALLLIDASQGIEAQTVANFWKAVEQ------DLVIIPVINKIDLPSA--DVDR  144 (600)
T ss_dssp             GGH---------HHHH---HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT------TCEEEEEEECTTSTTC--CHHH
T ss_pred             hHH---------HHHH---HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC------CCCEEEEEeccCcccc--CHHH
Confidence            541         2222   335678999999999877654433333222222      4789999999999864  2344


Q ss_pred             HHHHHhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          279 VAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       279 ~~~~~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ..+++.+..++.  +++++||++|.|+++|+++|.+.++..
T Consensus       145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            455666655553  589999999999999999999998653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.73  E-value=2.3e-17  Score=164.09  Aligned_cols=161  Identities=17%  Similarity=0.162  Sum_probs=108.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcc-------e--------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKV-------A--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~-------~--------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      ..++|+++|++|+|||||+++|++...       .        ......+.|.......+...+..+.+|||||+..+  
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f--   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY--   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH--
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH--
Confidence            357899999999999999999986311       0        00112345555444445556788999999997532  


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhh---HHH
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKD---LLK  278 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~---~~~  278 (424)
                                .......+..+|++++|+|++++........+..+...      +.| +++|+||+|+......   ..+
T Consensus        80 ----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~  143 (397)
T 1d2e_A           80 ----------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVEL  143 (397)
T ss_dssp             ----------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred             ----------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHH
Confidence                      23444567889999999999876544444444444443      367 6899999999853222   122


Q ss_pred             HHHHHhcCCCC----CeEEEEecCCCcC----------hHHHHHHHHHhccC
Q 014461          279 VAEQFKHLPGY----ERIFMTSGLKGAG----------LKALTQYLMEQAVQ  316 (424)
Q Consensus       279 ~~~~~~~~~~~----~~~~~iSA~~g~g----------i~~L~~~i~~~l~~  316 (424)
                      ....+....++    .+++++||++|.|          +++|++.|.+.++.
T Consensus       144 ~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence            23333333332    3699999999775          89999999998864

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.72  E-value=4.7e-17  Score=168.04  Aligned_cols=163  Identities=18%  Similarity=0.236  Sum_probs=99.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE-------Ee----cCCccEEEEeCCCcccCCCCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-------MT----KADTQICIFDTPGLMLNKSGY  204 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~-------~~----~~~~~i~l~DtpG~~~~~~~~  204 (424)
                      .....+|+++|.+|||||||+|+|++..+.  .....|........       +.    ..+..+.+|||||........
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~  115 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH  115 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence            456799999999999999999999987753  11112211111111       11    125679999999975443211


Q ss_pred             ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK  284 (424)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~  284 (424)
                               .   ..+..+|++++|+|+++.  .....+...+....    ++.|+++|+||+|+........+..+.+.
T Consensus       116 ---------~---~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~~~~~~~~  177 (535)
T 3dpu_A          116 ---------Q---FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQKKINERF  177 (535)
T ss_dssp             ---------H---HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCHHHHHHHC
T ss_pred             ---------H---HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhC----CCCCEEEEEECCCcccccccCHHHHHHHH
Confidence                     0   124568999999999642  22334444455443    24799999999999765432233344444


Q ss_pred             cCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW  319 (424)
Q Consensus       285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~  319 (424)
                      ...+.. ++++||++|.|+++|+++|.+.+...+.
T Consensus       178 ~~~~~~-~~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          178 PAIENR-FHRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             GGGTTC-EEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             HhcCCc-eEEEecCcccCHHHHHHHHHHHHhcccc
Confidence            444443 9999999999999999999999876553

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.71  E-value=2.9e-17  Score=167.43  Aligned_cols=153  Identities=17%  Similarity=0.221  Sum_probs=98.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc------------------------------eeecCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV------------------------------AAVSRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~  186 (424)
                      ...++|+++|.+|+|||||+|+|++...                              .......+.|.+.....+...+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4578999999999999999999975411                              0112223556665555567778


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      .++.||||||+..+            .......+..+|++|+|+|++++..       .........+...+     ..|
T Consensus       111 ~~~~iiDTPG~~~f------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~  173 (483)
T 3p26_A          111 ANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHN  173 (483)
T ss_dssp             CEEEEECCCCCGGG------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCC
T ss_pred             ceEEEEECCCcHHH------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCc
Confidence            89999999998643            3444556788999999999986522       22223333343332     246


Q ss_pred             EEEEEecCCCCCChh-hHH---HHHHHHhcCCC----CCeEEEEecCCCcChHHH
Q 014461          260 RVLCMNKVDLVTKKK-DLL---KVAEQFKHLPG----YERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       260 ~ilV~NK~Dl~~~~~-~~~---~~~~~~~~~~~----~~~~~~iSA~~g~gi~~L  306 (424)
                      +++|+||+|+..... ...   +.+..+....+    ..+++++||++|.|++++
T Consensus       174 iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          174 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             EEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            999999999986322 222   22222221112    236899999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.71  E-value=1.6e-18  Score=180.30  Aligned_cols=161  Identities=18%  Similarity=0.233  Sum_probs=88.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee------------------------------cCCCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~  186 (424)
                      ...++|+++|++|+|||||+|+|++......                              ...+++|.+.....+...+
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            3457899999999999999999975321111                              1134667666655566677


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-------CCchHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      ..+.||||||+..+...            ....+..+|++|+|+|++.+.       ..........+...+      .|
T Consensus       255 ~~i~iiDTPGh~~f~~~------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lg------ip  316 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISG------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALG------IS  316 (592)
T ss_dssp             ----CCEEESSSEEEEE------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSS------CC
T ss_pred             eEEEEEECCChHHHHHH------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcC------CC
Confidence            88999999998765321            123456789999999998642       334444444555443      44


Q ss_pred             -EEEEEecCCCCCC-hhhHH---HHHHHHh-cCCCCC----eEEEEecCCCcChH--------------HHHHHHHHhcc
Q 014461          260 -RVLCMNKVDLVTK-KKDLL---KVAEQFK-HLPGYE----RIFMTSGLKGAGLK--------------ALTQYLMEQAV  315 (424)
Q Consensus       260 -~ilV~NK~Dl~~~-~~~~~---~~~~~~~-~~~~~~----~~~~iSA~~g~gi~--------------~L~~~i~~~l~  315 (424)
                       +|+|+||+|+... .....   ..+..+. ...++.    +++++||++|.|++              .|++.|...++
T Consensus       317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence             8999999999762 22222   2233333 334542    69999999999998              78888877654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.71  E-value=7.4e-17  Score=143.83  Aligned_cols=161  Identities=21%  Similarity=0.229  Sum_probs=103.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..++|+++|++|||||||+++|.+..+.... .+..+.+...+.+..++.  .+.+|||||........         . 
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~---------~-   96 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT---------S-   96 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC---------H-
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh---------H-
Confidence            4589999999999999999999987664322 222222333344445554  45679999986543211         1 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                        ..+..++++++|+|.++..+  ...+..|+..+........|+++|+||+|+.............+....+. .++.+
T Consensus        97 --~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld~  171 (191)
T 1oix_A           97 --AYYRGAVGALLVYDIAKHLT--YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIET  171 (191)
T ss_dssp             --HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             --HHhhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEE
Confidence              12355789999999864321  12222344333221223578999999999965322223344455554555 48999


Q ss_pred             ecCCCcChHHHHHHHHHhc
Q 014461          296 SGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l  314 (424)
                      ||+++.|++++++.|.+.+
T Consensus       172 Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          172 SALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.71  E-value=6.5e-17  Score=158.15  Aligned_cols=123  Identities=23%  Similarity=0.388  Sum_probs=88.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ..+|+++|.||||||||+|+|++.+ +.++++|+||+++..+.+...+.++.++||||+.....     .........+.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-----~~~~~g~~~l~  145 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-----DGRGRGKQVIA  145 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC----------CHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-----hhhHHHHHHHH
Confidence            4689999999999999999999987 45899999999999999999999999999999975421     12334566777


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL  269 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl  269 (424)
                      .++.||++++|+|++++... ...+...|....... ...|.++++||+|.
T Consensus       146 ~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          146 VARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRL-NKTPPDILIKKKEK  194 (376)
T ss_dssp             HHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEE-TCCCCCEEEEECSS
T ss_pred             HHHhcCccccccccCccHHH-HHHHHHHHHHhhHhh-ccCChhhhhhHhhh
Confidence            88999999999999753211 112222333332211 12455666777664

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.71  E-value=9e-17  Score=161.60  Aligned_cols=153  Identities=18%  Similarity=0.199  Sum_probs=99.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCccee----------ecCCC----------------------CceeeEEEEEEec
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA----------VSRKT----------------------NTTTHEVLGVMTK  184 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~----------~~~~~----------------------~tt~~~~~~~~~~  184 (424)
                      ...++|+++|++|+|||||+|+|++.....          .+..+                      +.|.+.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            345899999999999999999998643111          11112                      2233333334556


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .+..+.+|||||+..+            .......+..+|++++|+|++++...........+...+     ..|+++|+
T Consensus       102 ~~~~~~iiDtpGh~~f------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~-----~~~iIvvi  164 (434)
T 1zun_B          102 AKRKFIIADTPGHEQY------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLG-----IKHIVVAI  164 (434)
T ss_dssp             SSEEEEEEECCCSGGG------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCEEEEEE
T ss_pred             CCceEEEEECCChHHH------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEE
Confidence            6778999999997643            122234567899999999998766444444444444432     13689999


Q ss_pred             ecCCCCCCh-hh---HHHHHHHHhcCCC--C--CeEEEEecCCCcChHHH
Q 014461          265 NKVDLVTKK-KD---LLKVAEQFKHLPG--Y--ERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       265 NK~Dl~~~~-~~---~~~~~~~~~~~~~--~--~~~~~iSA~~g~gi~~L  306 (424)
                      ||+|+.... ..   ..+....+....+  .  .+++++||++|.|++++
T Consensus       165 NK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          165 NKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             EcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            999998632 22   2233344444444  2  36999999999999984

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.71  E-value=3.3e-18  Score=173.37  Aligned_cols=158  Identities=20%  Similarity=0.253  Sum_probs=106.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ++.++|+++|++|+|||||+++|.+..+. .+..++.|.+.....+..++..+.||||||+..+....            
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~------------   68 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR------------   68 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB------------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH------------
Confidence            36788999999999999999999875543 22334444443333344567789999999987653211            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHH---HhcCC-CCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ---FKHLP-GYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~---~~~~~-~~~~  291 (424)
                      ...+..+|++++|+|++++........+..+...      +.|+++++||+|+.... ..+...+..   +.+.+ +..+
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~  142 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQ  142 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCE
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCcc
Confidence            1346778999999999876655554444444433      47899999999997531 111100000   01111 1236


Q ss_pred             EEEEecCCCcChHHHHHHHHHh
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~  313 (424)
                      ++++||++|.|+++|+++|...
T Consensus       143 ~v~vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          143 FVHVSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             EEECCTTTCTTCTTHHHHTTTT
T ss_pred             EEEEeeeeccCcchhhhhhhhh
Confidence            9999999999999999999764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.70  E-value=6e-18  Score=165.76  Aligned_cols=188  Identities=18%  Similarity=0.234  Sum_probs=113.0

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCceeeE-------E----------EEE---------
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE-------V----------LGV---------  181 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~-------~----------~~~---------  181 (424)
                      +...+...|+++|.+|+|||||+++|.      |.++..+...++++...       .          ..+         
T Consensus        74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~  153 (355)
T 3p32_A           74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL  153 (355)
T ss_dssp             GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred             hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence            344567899999999999999999986      34444343333332200       0          000         


Q ss_pred             -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461          182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (424)
Q Consensus       182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~  248 (424)
                                   +...+.++.||||||+...            .   ...+..+|++++|+|++....  ...+..   
T Consensus       154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~------------~---~~~~~~aD~vl~V~d~~~~~~--~~~l~~---  213 (355)
T 3p32_A          154 GGVTRATRETVVLLEAAGFDVILIETVGVGQS------------E---VAVANMVDTFVLLTLARTGDQ--LQGIKK---  213 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH------------H---HHHHTTCSEEEEEEESSTTCT--TTTCCT---
T ss_pred             cchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH------------H---HHHHHhCCEEEEEECCCCCcc--HHHHHH---
Confidence                         1225678999999997532            0   112467899999999864321  111110   


Q ss_pred             HhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC----C----C-CCeEEEEecCCCcChHHHHHHHHHhccC--C
Q 014461          249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL----P----G-YERIFMTSGLKGAGLKALTQYLMEQAVQ--R  317 (424)
Q Consensus       249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----~----~-~~~~~~iSA~~g~gi~~L~~~i~~~l~~--~  317 (424)
                      .+     ...|+++|+||+|+... .........+...    .    + ..+++++||++|.|+++|+++|.+.+..  .
T Consensus       214 ~~-----~~~p~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~  287 (355)
T 3p32_A          214 GV-----LELADIVVVNKADGEHH-KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTG  287 (355)
T ss_dssp             TS-----GGGCSEEEEECCCGGGH-HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred             hH-----hhcCCEEEEECCCCcCh-hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhc
Confidence            00     12579999999999753 2222222222211    1    1 2459999999999999999999998754  1


Q ss_pred             CCCCCCCCcchhhHHHHHHHHHHHHHHhhcCc
Q 014461          318 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQ  349 (424)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~  349 (424)
                      +..++. . ......+++.+.+|+++++.+.+
T Consensus       288 ~~~~~~-~-r~~~~~~~~~e~i~e~l~~~~~~  317 (355)
T 3p32_A          288 AGEFDA-R-RRDQQVDWTWQLVRDAVLDRVWS  317 (355)
T ss_dssp             TTHHHH-H-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CchHHH-H-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111 1 11234556788999999887754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.68  E-value=1.7e-16  Score=164.56  Aligned_cols=160  Identities=18%  Similarity=0.277  Sum_probs=102.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec------------------CCccEEEEeCCCcc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------ADTQICIFDTPGLM  198 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------------------~~~~i~l~DtpG~~  198 (424)
                      .+.++|+++|++|+|||||+++|++..+.... ..+.|.+.....+..                  ....+.||||||+.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            45789999999999999999999976543111 112222211111111                  11259999999987


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh----
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK----  274 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~----  274 (424)
                      .+.....            ..+..+|++++|+|++++........+.++...      +.|+++|+||+|+.....    
T Consensus        82 ~F~~~~~------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~------~vPiIVViNKiDl~~~~~~~~~  143 (594)
T 1g7s_A           82 AFTTLRK------------RGGALADLAILIVDINEGFKPQTQEALNILRMY------RTPFVVAANKIDRIHGWRVHEG  143 (594)
T ss_dssp             CCTTSBC------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSTTCCCCTT
T ss_pred             HHHHHHH------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc------CCeEEEEecccccccccccccC
Confidence            6532111            235678999999999987665555555555542      478999999999964210    


Q ss_pred             ------------h----HH----HHHHHHhcC-------------CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          275 ------------D----LL----KVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       275 ------------~----~~----~~~~~~~~~-------------~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                                  .    +.    +....+.+.             ....+++++||++|.|+++|+++|...++
T Consensus       144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                        0    11    111222211             12236999999999999999999998764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.68  E-value=1.1e-17  Score=156.83  Aligned_cols=139  Identities=22%  Similarity=0.336  Sum_probs=97.6

Q ss_pred             hhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-C--------------CCCCCCCccChhhHHHHHHhcCCeEE
Q 014461           24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D--------------PQNNNAAKKQEPTWDEKYRERTDRIV   88 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~--------------~k~Dl~~~~~~~~~~~~~~~~~~~i~   88 (424)
                      +||-|||.++..+...  .+..+|+++++.|||.|.++ +              ||+||++++..+.|..++.+.|..+ 
T Consensus         2 ~w~PGhm~ka~~~~~~--~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-   78 (262)
T 3cnl_A            2 SWYPGHIEKAKRQIKD--LLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-   78 (262)
T ss_dssp             -------CCTTHHHHH--HHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred             CCCchHHHHHHHHHHH--HHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence            4778899999888877  88899999999999999988 5              3569998888889999998888888 


Q ss_pred             Eeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccc-eEEEEEecCCCChhHHHHhHhCCccee
Q 014461           89 FGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS-VAVGIIGAPNAGKSSIINYMVGTKVAA  166 (424)
Q Consensus        89 f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~v~vvG~~~~GKStLin~l~~~~~~~  166 (424)
                      +.++ ++.|...+                 ++.               .... .+++++|.||+|||||+|+|.+.....
T Consensus        79 ~iSa~~~~gi~~L-----------------~~~---------------l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~  126 (262)
T 3cnl_A           79 ITTHKGEPRKVLL-----------------KKL---------------SFDRLARVLIVGVPNTGKSTIINKLKGKRASS  126 (262)
T ss_dssp             EECCTTSCHHHHH-----------------HHH---------------CCCTTCEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred             EEECCCCcCHHHH-----------------HHH---------------HHHhhhheEEeCCCCCCHHHHHHHHhcccccc
Confidence            8887 77776655                 110               1111 689999999999999999999988877


Q ss_pred             ecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       167 ~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      +++.+++|+.....   ..+..+.+|||||+..+
T Consensus       127 ~~~~~g~T~~~~~~---~~~~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          127 VGAQPGITKGIQWF---SLENGVKILDTPGILYK  157 (262)
T ss_dssp             --------CCSCEE---ECTTSCEEESSCEECCC
T ss_pred             cCCCCCCccceEEE---EeCCCEEEEECCCcccC
Confidence            88888888765422   22457899999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.68  E-value=1e-16  Score=161.23  Aligned_cols=153  Identities=17%  Similarity=0.290  Sum_probs=95.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc--cee----------------------------ecCCCCceeeEEEEEEecCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK--VAA----------------------------VSRKTNTTTHEVLGVMTKADT  187 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~--~~~----------------------------~~~~~~tt~~~~~~~~~~~~~  187 (424)
                      ..++|+++|++|+|||||+++|++..  +..                            .....++|.+.....+...+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            46899999999999999999998531  110                            011345565555445667788


Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCcE
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQKR  260 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p~  260 (424)
                      .+.+|||||+..+            .......+..+|++++|+|++++       +..........+...+     ..|+
T Consensus        85 ~~~iiDtpG~~~f------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~-----~~~i  147 (435)
T 1jny_A           85 FFTIIDAPGHRDF------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-----LDQL  147 (435)
T ss_dssp             EEEECCCSSSTTH------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-----CTTC
T ss_pred             EEEEEECCCcHHH------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC-----CCeE
Confidence            9999999998643            23344567889999999999874       3333333333333332     1358


Q ss_pred             EEEEecCCCCCC---hh---hHHHHHHHHhcCCCC----CeEEEEecCCCcChHHHH
Q 014461          261 VLCMNKVDLVTK---KK---DLLKVAEQFKHLPGY----ERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       261 ilV~NK~Dl~~~---~~---~~~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~L~  307 (424)
                      ++|+||+|+...   ..   ...+.+..+....++    .+++++||++|.|+.+++
T Consensus       148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            999999999862   11   122233333333332    469999999999997543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.68  E-value=1e-16  Score=169.76  Aligned_cols=166  Identities=22%  Similarity=0.251  Sum_probs=108.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEE---------EEEe------------------cCC--
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL---------GVMT------------------KAD--  186 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~---------~~~~------------------~~~--  186 (424)
                      ....++|+|+|.+|+|||||+|+|+|..+..++..++|......         ..+.                  ..+  
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            44679999999999999999999999988777777766211000         0000                  000  


Q ss_pred             ----------------------------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC
Q 014461          187 ----------------------------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS  238 (424)
Q Consensus       187 ----------------------------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~  238 (424)
                                                  ..+.+|||||+....         .....+...+..+|++++|+|++.+.+.
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~---------~~~~~~~~~i~~aD~vL~Vvda~~~~s~  216 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE---------ARNELSLGYVNNCHAILFVMRASQPCTL  216 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH---------TCHHHHTHHHHSSSEEEEEEETTSTTCH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh---------hHHHHHHHHHHhCCEEEEEEeCCCccch
Confidence                                        469999999986531         1234455667889999999999876554


Q ss_pred             chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh----h---h-------HHHHH-HHHhcCC-------CCCeEEEEe
Q 014461          239 PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----K---D-------LLKVA-EQFKHLP-------GYERIFMTS  296 (424)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----~---~-------~~~~~-~~~~~~~-------~~~~~~~iS  296 (424)
                      .+...  +...+..   .+.|+++|+||+|+....    .   .       +.... ..+....       ...++++||
T Consensus       217 ~e~~~--l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vS  291 (695)
T 2j69_A          217 GERRY--LENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELS  291 (695)
T ss_dssp             HHHHH--HHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECC
T ss_pred             hHHHH--HHHHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEe
Confidence            43322  2222221   146799999999986532    1   1       11111 1122211       123599999


Q ss_pred             cC--------------CCcChHHHHHHHHHhcc
Q 014461          297 GL--------------KGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~--------------~g~gi~~L~~~i~~~l~  315 (424)
                      |+              +|.|+++|+++|.+.+.
T Consensus       292 Ak~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          292 SIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             ChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence            99              99999999999988764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=147.72  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=59.9

Q ss_pred             cccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC-CCCCeEEEEecCC
Q 014461          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL-PGYERIFMTSGLK  299 (424)
Q Consensus       222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~iSA~~  299 (424)
                      .+|++++|+|+++........+..|+..+... ...+.|+++|+||+|+...+ .. +..+.+... .+. .++++||++
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v-~~~~~~~~~~~~~-~~~e~SAk~  238 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-YI-RDAHTFALSKKNL-QVVETSARS  238 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-HH-HHHHHHHHTSSSC-CEEECBTTT
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH-HH-HHHHHHHHhcCCC-eEEEEECCC
Confidence            68999999999764112233344444443221 11257999999999997532 22 344455543 344 599999999


Q ss_pred             CcChHHHHHHHHHhc
Q 014461          300 GAGLKALTQYLMEQA  314 (424)
Q Consensus       300 g~gi~~L~~~i~~~l  314 (424)
                      |.|+++++++|.+.+
T Consensus       239 g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          239 NVNVDLAFSTLVQLI  253 (255)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.67  E-value=1.6e-16  Score=154.74  Aligned_cols=188  Identities=15%  Similarity=0.244  Sum_probs=113.5

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCceeeE--EEE--------------E----------
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE--VLG--------------V----------  181 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~--~~~--------------~----------  181 (424)
                      ....+...|+++|++|+|||||+|.|.      +.++..++..++++...  ..+              .          
T Consensus        51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l  130 (341)
T 2p67_A           51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL  130 (341)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred             cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCcccccc
Confidence            345677899999999999999999996      44555555555443310  000              0          


Q ss_pred             -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461          182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (424)
Q Consensus       182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~  248 (424)
                                   +...+.++.++||||+..+.      .         .....+|++++|+|++.+.....  +.... 
T Consensus       131 ~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~------~---------~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~-  192 (341)
T 2p67_A          131 GGASQRARELMLLCEAAGYDVVIVETVGVGQSE------T---------EVARMVDCFISLQIAGGGDDLQG--IKKGL-  192 (341)
T ss_dssp             -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH------H---------HHHTTCSEEEEEECC------CC--CCHHH-
T ss_pred             chhHHHHHHHHHHhhccCCCEEEEeCCCccchH------H---------HHHHhCCEEEEEEeCCccHHHHH--HHHhh-
Confidence                         01346789999999986431      1         02367899999999864311100  00000 


Q ss_pred             HhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCC-----CCeEEEEecCCCcChHHHHHHHHHhcc---C
Q 014461          249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPG-----YERIFMTSGLKGAGLKALTQYLMEQAV---Q  316 (424)
Q Consensus       249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~-----~~~~~~iSA~~g~gi~~L~~~i~~~l~---~  316 (424)
                       .      +.|.++|+||+|+... .......+.+..    ...     ..+++++||++|.|+++|+++|.+.+.   .
T Consensus       193 -~------~~p~ivv~NK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~  264 (341)
T 2p67_A          193 -M------EVADLIVINKDDGDNH-TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA  264 (341)
T ss_dssp             -H------HHCSEEEECCCCTTCH-HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred             -h------cccCEEEEECCCCCCh-HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh
Confidence             1      2568999999999763 223222222221    111     356899999999999999999998775   2


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCcc
Q 014461          317 RPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQE  350 (424)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~e  350 (424)
                      ++ .++ .... ....+.+.|.+++.+++.+.++
T Consensus       265 ~~-~~~-~~r~-~~~~~~~~e~i~e~l~~~~~~~  295 (341)
T 2p67_A          265 SG-RLQ-QVRQ-QQSVEWLRKQTEEEVLNHLFAN  295 (341)
T ss_dssp             TT-HHH-HHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CC-hHH-HHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence            21 111 1111 2244556788899888887665

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.67  E-value=1.2e-16  Score=152.64  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=102.8

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      ||+++|.+|||||||++++.+..........+.|.......+ .....+.+|||||+..+....        + .....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~--------l-~~~~yy   70 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPS--------Y-DSERLF   70 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCS--------H-HHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchh--------h-hhhhhc
Confidence            589999999999999998876543221111222221111112 234789999999998653110        0 011346


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-------hHHHHHHHHhcC----CCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-------DLLKVAEQFKHL----PGY  289 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-------~~~~~~~~~~~~----~~~  289 (424)
                      +.++++++|+|+++........+.+++...... .++.|+++|+||+|+.....       ...+..+++++.    .+.
T Consensus        71 r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i  149 (331)
T 3r7w_B           71 KSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV  149 (331)
T ss_dssp             TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred             cCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence            789999999999875222223444455543222 24689999999999987521       222334455553    233


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                       .++++||++ .+|.+.|..|.+.+.+
T Consensus       150 -~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          150 -SFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             -EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             -eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence             599999998 5899999999877654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.66  E-value=4.3e-16  Score=168.64  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      .....+|+++|++|+|||||+++|++....               ......+.|.+.....+...+..+.+|||||+..+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            345689999999999999999999863100               00112333433322234556788999999998642


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---  276 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~---  276 (424)
                                  .......+..+|++|+|+|++++........+..+...      +.| +|+|+||+|+....+..   
T Consensus       373 ------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i  434 (1289)
T 3avx_A          373 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELV  434 (1289)
T ss_dssp             ------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHH
T ss_pred             ------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHH
Confidence                        33445567889999999999887665555555555543      367 78999999998643222   


Q ss_pred             HHHHHHHhcCCCC----CeEEEEecCCC--------cChHHHHHHHHHhccC
Q 014461          277 LKVAEQFKHLPGY----ERIFMTSGLKG--------AGLKALTQYLMEQAVQ  316 (424)
Q Consensus       277 ~~~~~~~~~~~~~----~~~~~iSA~~g--------~gi~~L~~~i~~~l~~  316 (424)
                      ......+....++    .+++++||++|        .|+++|++.|.+.++.
T Consensus       435 ~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          435 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            2223333333332    36999999999        5799999999987753

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.66  E-value=4.4e-16  Score=159.71  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=76.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--ce-------------eecC------CCCceeeEEEEEEecCCccEEEEeCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA-------------AVSR------KTNTTTHEVLGVMTKADTQICIFDTP  195 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~-------------~~~~------~~~tt~~~~~~~~~~~~~~i~l~Dtp  195 (424)
                      .+..+|+++|++|+|||||+++|++..  ..             .+.+      ..+.|.......+.+.+..+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            356899999999999999999998531  10             0111      12222222223355678899999999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      |+..+.            ......+..+|++|+|+|++++.......+...+..      .+.|+++|+||+|+...
T Consensus        91 G~~df~------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~------~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFS------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL------RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCC------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT------TTCCEEEEEECTTSCCS
T ss_pred             CChhHH------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH------cCCCEEEEEcCcCCccc
Confidence            986542            123345778999999999987654333333333322      24789999999999764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.65  E-value=1.1e-16  Score=169.37  Aligned_cols=188  Identities=14%  Similarity=0.196  Sum_probs=115.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC--cce---------eecC------CCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA---------AVSR------KTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~--~~~---------~~~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~  199 (424)
                      .+..+|+++|++|+|||||+|+|++.  .+.         .+.+      ..++|.......+.+.+.++.+|||||+..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            35689999999999999999999842  110         0111      234444444445667788999999999875


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV  279 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~  279 (424)
                      +.         .   .....+..+|++++|+|++++.......++..+...      +.|+++|+||+|+...  +....
T Consensus        88 f~---------~---~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~------~~p~ilviNK~Dl~~~--~~~~~  147 (693)
T 2xex_A           88 FT---------V---EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY------GVPRIVFVNKMDKLGA--NFEYS  147 (693)
T ss_dssp             CC---------H---HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCCEEEEEECTTSTTC--CHHHH
T ss_pred             hH---------H---HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc------CCCEEEEEECCCcccc--chHHH
Confidence            42         1   122345668999999999877665555555545443      4789999999999864  23333


Q ss_pred             HHHHhc---CCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCC-C----CCcchhhHHHH-HHHHHHHHHHhhcCcc
Q 014461          280 AEQFKH---LPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED-P----LTMSEEVMKNI-SLEVVRERLLDHVHQE  350 (424)
Q Consensus       280 ~~~~~~---~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~-~----~~~~~~~~~~~-~~e~ire~l~~~l~~e  350 (424)
                      .+.+..   ......++++|+  |.|++.+++++.+..    +.|+ .    ...++.+.++. .++.+|+++++.+.++
T Consensus       148 ~~~l~~~l~~~~~~~~ipisa--~~~~~~l~d~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~  221 (693)
T 2xex_A          148 VSTLHDRLQANAAPIQLPIGA--EDEFEAIIDLVEMKC----FKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAET  221 (693)
T ss_dssp             HHHHHHHHCCCEEESEEEECC--GGGCCEEEETTTTEE----EECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCceeEEeeccc--CCCcceeeeeeccee----EEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhC
Confidence            333332   233345789998  777777777654433    2232 1    11222222222 4678899998887544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.65  E-value=1.3e-15  Score=161.14  Aligned_cols=118  Identities=22%  Similarity=0.280  Sum_probs=77.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--c---eee------cC------CCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--V---AAV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~---~~~------~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~  199 (424)
                      .+..+|+++|++|+|||||+|+|+...  +   ..+      .+      ..+.|.......+.+.+..+.+|||||+..
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            457899999999999999999998311  1   001      11      223444333444566788999999999865


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      +            .......+..+|++++|+|++++.......++..+...      +.|+++|+||+|+...
T Consensus        90 f------------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~------~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           90 F------------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY------KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             C------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCEEEEEECTTSTTC
T ss_pred             h------------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc------CCCEEEEEECCCcccC
Confidence            3            11223445678999999999877655544444444432      4789999999999764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.65  E-value=9.8e-16  Score=152.14  Aligned_cols=167  Identities=26%  Similarity=0.371  Sum_probs=111.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ...|+++|++|||||||+++|++... .+.+.+.+|.....+.+...+ ..+.++||||+.......  ..+.   ...+
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~--~~L~---~~fl  230 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG--KGLG---LEFL  230 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS--CCSC---HHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhh--hhhh---HHHH
Confidence            45689999999999999999998764 467778888777777776665 789999999986431100  0010   1122


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHH---HHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIR---LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~---~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      ..+..+|.+++|+|++   ......+..   .+..+... ....|.++|+||+|+... ..+....+.+. ..+. .+++
T Consensus       231 ~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~a-L~~~P~ILVlNKlDl~~~-~~~~~l~~~l~-~~g~-~vi~  303 (416)
T 1udx_A          231 RHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEE-EAVKALADALA-REGL-AVLP  303 (416)
T ss_dssp             HHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCH-HHHHHHHHHHH-TTTS-CEEE
T ss_pred             HHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHH-hhcCCEEEEEECCChhhH-HHHHHHHHHHH-hcCC-eEEE
Confidence            3456789999999996   222222222   22222100 013689999999999764 33333333333 2344 4999


Q ss_pred             EecCCCcChHHHHHHHHHhccCCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      +||+++.|+++|+++|.+.+...+
T Consensus       304 iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          304 VSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             EECCCccCHHHHHHHHHHHHHhcc
Confidence            999999999999999999987654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.64  E-value=2e-15  Score=141.58  Aligned_cols=134  Identities=22%  Similarity=0.245  Sum_probs=92.5

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ....+.++|+++|.+|+|||||+|+|++.....++..+++|.......+..++..+.+|||||+..+....  ......+
T Consensus        31 ~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~~~~~~i  108 (262)
T 3def_A           31 QKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--HQALELI  108 (262)
T ss_dssp             HTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--HHHHHHH
T ss_pred             hccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--HHHHHHH
Confidence            34456899999999999999999999998877778888888877777777888899999999997653211  1111112


Q ss_pred             HHHHhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      .+.+ ....+|++++|+|++.. ....+..+.+.+....... ...|+++|+||+|+..
T Consensus       109 ~~~l-~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          109 KGFL-VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHHT-TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred             HHHH-hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence            2222 12478999999988642 2223335666666543211 1148999999999964

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.64  E-value=1.1e-15  Score=150.08  Aligned_cols=167  Identities=17%  Similarity=0.223  Sum_probs=103.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE----------------------------------------
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE----------------------------------------  177 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~----------------------------------------  177 (424)
                      .-.+|+++|.+|||||||+|+|+|..+...+... +|+..                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  111 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET  111 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence            3458999999999999999999997653222211 11000                                        


Q ss_pred             ---------------EEEEEecCCccEEEEeCCCcccCCCC-CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH
Q 014461          178 ---------------VLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS  241 (424)
Q Consensus       178 ---------------~~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~  241 (424)
                                     ...+.......+.+|||||+...... .+..........+..++..+|++++|+|++.. .....
T Consensus       112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~  190 (360)
T 3t34_A          112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATS  190 (360)
T ss_dssp             HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGC
T ss_pred             HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCH
Confidence                           11112233557999999999765321 11112223344455567889999999987532 11223


Q ss_pred             HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHH
Q 014461          242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL  310 (424)
Q Consensus       242 ~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i  310 (424)
                      .+..++..+..   .+.|+++|+||+|+........+..+.+....+. .++++|+.++.|+++.+..+
T Consensus       191 ~~~~l~~~~~~---~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 DAIKISREVDP---SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             HHHHHHHHSCT---TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHhcc---cCCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence            44555665543   2468999999999987544444434433333344 48999999999988765543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.63  E-value=9.8e-16  Score=157.77  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=83.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-----ce----------eecC------CCCceeeEEEEEEecCCccEEEEeCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VA----------AVSR------KTNTTTHEVLGVMTKADTQICIFDTP  195 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~----------~~~~------~~~tt~~~~~~~~~~~~~~i~l~Dtp  195 (424)
                      .+..+|+|+|+.++|||||..+|+...     ..          .+.+      .-+.|.......+.+.+..++|+|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            456899999999999999999996210     00          1111      12333333333467889999999999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      |+.++.         ..+.++   ++.+|.+|+|+|+..+...+...+++.+.+.+      .|.++++||+|....
T Consensus       109 GHvDF~---------~Ev~ra---L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~------lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFS---------EDTYRV---LTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA------TPVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCS---------HHHHHH---HHSCSEEEEEEETTTBSCHHHHHHHHHHHHTT------CCEEEEEECTTSCCC
T ss_pred             CcHHHH---------HHHHHH---HHhcCceEEEeecCCCcccccHHHHHHHHHhC------CceEEEEecccchhc
Confidence            998763         234444   55679999999999988877777777777653      889999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.63  E-value=1.1e-16  Score=145.38  Aligned_cols=150  Identities=11%  Similarity=0.132  Sum_probs=81.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+.++|+++|++|+|||||+|+|.+..+.........+..     .......+.+|||||+....         .....
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~---------~~~~~   74 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLR---------YKLSD   74 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-----TTGGGSSCEEEECCCCGGGT---------HHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-----EEeeCceEEEEECCCcHHHH---------HHHHH
Confidence            34578999999999999999999998765321111111110     11245678999999986542         11111


Q ss_pred             HH-hhcccccEEEEEEeCC-CCCCCchHHHHHHHHHhccC----CCCCCcEEEEEecCCCCCChhh------HHHHHHHH
Q 014461          216 AW-SAVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKKKD------LLKVAEQF  283 (424)
Q Consensus       216 ~~-~~~~~aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~----~~~~~p~ilV~NK~Dl~~~~~~------~~~~~~~~  283 (424)
                      .+ .....+|++++|+|++ +..+  ......++.++...    ...+.|+++|+||+|+......      +.+....+
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~  152 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKK--LTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV  152 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTC--CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhccccCCEEEEEEECCCChHH--HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHH
Confidence            11 1223479999999997 3222  22222333332111    1235899999999999875321      12223333


Q ss_pred             hcCCCCCeEEEEecCCCcC
Q 014461          284 KHLPGYERIFMTSGLKGAG  302 (424)
Q Consensus       284 ~~~~~~~~~~~iSA~~g~g  302 (424)
                      ....+. .++++||++|.+
T Consensus       153 ~~~~~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          153 IERRKK-SLNEVERKINEE  170 (218)
T ss_dssp             HHHHHH-HHHC--------
T ss_pred             HHHHhc-cccccccccccc
Confidence            333232 478999998865

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.63  E-value=4.5e-15  Score=139.75  Aligned_cols=132  Identities=20%  Similarity=0.239  Sum_probs=90.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ...++|+++|.+|+|||||+|+|++..+..+++.+++|.......+...+..+.+|||||+..+... . ......+...
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~-~-~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI-N-DMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE-C-HHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc-h-HHHHHHHHHH
Confidence            4578999999999999999999999887777888888877766667778889999999999764311 1 1111122221


Q ss_pred             HhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          217 WSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                       .....+|++++|+|++.. +...+..+...+....... ...|+++|+||+|+...
T Consensus       115 -~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          115 -LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             -TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred             -hhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCc
Confidence             123578999999988642 2222334555554432110 11589999999999754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.62  E-value=1.2e-15  Score=154.69  Aligned_cols=153  Identities=16%  Similarity=0.177  Sum_probs=87.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--c----------------------eeecC------CCCceeeEEEEEEecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--V----------------------AAVSR------KTNTTTHEVLGVMTKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~----------------------~~~~~------~~~tt~~~~~~~~~~~~  186 (424)
                      ...++|+++|++|+|||||+++|+...  +                      +.+.+      ..+.|.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            356899999999999999999997411  1                      00111      23444444333455677


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                      ..+.+|||||+..+.            ......+..+|++|+|+|++++..       .........+...      +.|
T Consensus       121 ~~~~iiDtPGh~~f~------------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp  182 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYV------------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GIN  182 (467)
T ss_dssp             EEEEECCCCC-----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCS
T ss_pred             eEEEEEECCCcHHHH------------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCC
Confidence            889999999986542            223345678999999999986531       2222333333332      356


Q ss_pred             -EEEEEecCCCCCC---hhhHH---HHHHHHhcCC-CC-----CeEEEEecCCCcChHHHH
Q 014461          260 -RVLCMNKVDLVTK---KKDLL---KVAEQFKHLP-GY-----ERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       260 -~ilV~NK~Dl~~~---~~~~~---~~~~~~~~~~-~~-----~~~~~iSA~~g~gi~~L~  307 (424)
                       +++|+||+|+...   .+...   .....+.... ++     .+++++||++|.|+++++
T Consensus       183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             8999999999642   11111   1222222222 22     359999999999998865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.61  E-value=2e-15  Score=146.56  Aligned_cols=191  Identities=19%  Similarity=0.223  Sum_probs=115.7

Q ss_pred             hhhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCceee-----------------EEEEE--------
Q 014461          133 KEEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTH-----------------EVLGV--------  181 (424)
Q Consensus       133 ~~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt~~-----------------~~~~~--------  181 (424)
                      .....++..++++|++|||||||+|.|.      +.++...+..+.++..                 .....        
T Consensus        49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~  128 (337)
T 2qm8_A           49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT  128 (337)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred             CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccc
Confidence            3445678899999999999999999998      4454444433332211                 00000        


Q ss_pred             --------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHH
Q 014461          182 --------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI  247 (424)
Q Consensus       182 --------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l  247 (424)
                                    +...+.++.|+||||+..+.      .         .....+|++++|+|++.+..  ...+...+
T Consensus       129 l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~------~---------~v~~~~d~vl~v~d~~~~~~--~~~i~~~i  191 (337)
T 2qm8_A          129 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE------T---------AVADLTDFFLVLMLPGAGDE--LQGIKKGI  191 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH------H---------HHHTTSSEEEEEECSCC--------CCTTH
T ss_pred             ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch------h---------hHHhhCCEEEEEEcCCCccc--HHHHHHHH
Confidence                          12357899999999987431      0         11356899999999853211  00011111


Q ss_pred             HHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CC-----CCCeEEEEecCCCcChHHHHHHHHHhcc---
Q 014461          248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LP-----GYERIFMTSGLKGAGLKALTQYLMEQAV---  315 (424)
Q Consensus       248 ~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~-----~~~~~~~iSA~~g~gi~~L~~~i~~~l~---  315 (424)
                      .+        .|.++|+||+|+...........+.+..    ..     ..++++++||++|.|+++|++.|.+...   
T Consensus       192 ~~--------~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~  263 (337)
T 2qm8_A          192 FE--------LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLT  263 (337)
T ss_dssp             HH--------HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hc--------cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            11        3467888999986533222222222221    11     1356899999999999999999988764   


Q ss_pred             CCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccC
Q 014461          316 QRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEI  351 (424)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~ei  351 (424)
                      ..++ + ....+ ....+++.|++|+++++.+.++.
T Consensus       264 ~~~~-~-~~~r~-~~~~~~~~~~i~~~~~~~~~~~~  296 (337)
T 2qm8_A          264 ATGE-I-AGKRR-EQDVKWMWALVHERLHQRLVGSA  296 (337)
T ss_dssp             HTTH-H-HHHHH-HHHHHHHHHHHHHHHHHHHTSSH
T ss_pred             hCcH-H-HHHHH-HHHHHHHHHHHHHHHHHHHHhCc
Confidence            2221 1 11112 23356788999999999887653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.61  E-value=4.3e-15  Score=156.67  Aligned_cols=116  Identities=17%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcce-----ee------cC------CCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~-----~~------~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~  199 (424)
                      .+..+|+++|++|+|||||+++|++....     .+      .+      ..+.|.......+...+..+.+|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45788999999999999999999842211     00      00      112343334444566788899999999864


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      +            .......+..+|++++|+|++++.......+...+...      +.|+++|+||+|+.
T Consensus        87 f------------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~------~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 F------------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL------GLPRMVVVTKLDKG  139 (665)
T ss_dssp             G------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCEEEEEECGGGC
T ss_pred             h------------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc------cCCEEEEecCCchh
Confidence            3            12233455678999999999877655444454444442      47899999999997

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.60  E-value=1.1e-14  Score=154.38  Aligned_cols=118  Identities=17%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--ce---e------ecC------CCCceeeEEEEEEecCC-------ccEEEE
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA---A------VSR------KTNTTTHEVLGVMTKAD-------TQICIF  192 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~---~------~~~------~~~tt~~~~~~~~~~~~-------~~i~l~  192 (424)
                      .+..+|+++|++|+|||||+++|+...  +.   .      ..+      ..+.|.......+.+.+       ..+.||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            356899999999999999999997421  11   0      111      12334333333344444       789999


Q ss_pred             eCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       193 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ||||+.++.         .   .....+..+|++|+|+|++++.......++..+...      +.|+++|+||+|+...
T Consensus        88 DTPG~~df~---------~---~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~------~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFT---------I---EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY------KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchH---------H---HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc------CCCEEEEEeCCCcccc
Confidence            999987541         1   222345678999999999876554444444333322      4789999999998753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.59  E-value=1e-16  Score=157.50  Aligned_cols=217  Identities=14%  Similarity=0.110  Sum_probs=129.5

Q ss_pred             CCcEEEEeCCCCccCCC-----------------CCCCCCCCcc----ChhhHHHH-HHhcCC---eEEEeec-cccccc
Q 014461           45 DCDSVFDSSYFRIPTID-----------------DPQNNNAAKK----QEPTWDEK-YRERTD---RIVFGEE-AQKGKL   98 (424)
Q Consensus        45 ~~d~vie~~dar~p~~~-----------------~~k~Dl~~~~----~~~~~~~~-~~~~~~---~i~f~~~-~~~~~~   98 (424)
                      ..++++.+.|++.|..+                 .||+||.+.+    ....|... +...|.   .+++.|+ ++.|..
T Consensus        71 ~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~  150 (369)
T 3ec1_A           71 SKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMA  150 (369)
T ss_dssp             HCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHH
T ss_pred             cCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHH
Confidence            34677777777665543                 3377998764    34567654 455665   5788888 888887


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCc
Q 014461           99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNT  173 (424)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~t  173 (424)
                      .+.              ..+...+               ...+++++|.+|+|||||+|+|++.     ....++..++|
T Consensus       151 ~L~--------------~~I~~~~---------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt  201 (369)
T 3ec1_A          151 KVM--------------EAINRYR---------------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT  201 (369)
T ss_dssp             HHH--------------HHHHHHH---------------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS
T ss_pred             HHH--------------HHHHhhc---------------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe
Confidence            661              1111111               2357999999999999999999986     45668899999


Q ss_pred             eeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC
Q 014461          174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ  253 (424)
Q Consensus       174 t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~  253 (424)
                      |+......+   +..+.++||||+..... ............ +......|.+++++++............+++.     
T Consensus       202 T~~~~~~~~---~~~~~liDtPG~~~~~~-~~~~l~~~~l~~-~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~-----  271 (369)
T 3ec1_A          202 TLDMIEIPL---ESGATLYDTPGIINHHQ-MAHFVDARDLKI-ITPKREIHPRVYQLNEGQTLFFGGLARLDYIK-----  271 (369)
T ss_dssp             SCEEEEEEC---STTCEEEECCSCCCCSS-GGGGSCTTTHHH-HSCSSCCCCEEEEECTTEEEEETTTEEEEEEE-----
T ss_pred             EEeeEEEEe---CCCeEEEeCCCcCcHHH-HHHHHhHHHHHH-HhcccccCceEEEEcCCceEEECCEEEEEEcc-----
Confidence            988665332   33489999999975531 111111111211 11226679999999984211000000011111     


Q ss_pred             CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461          254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (424)
Q Consensus       254 ~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi  303 (424)
                       ..+.|+++++||+|.... .......+.+.+..+.. +.+.++..+.++
T Consensus       272 -~~~~~~~~v~~k~d~~~~-~~~~~~~~~~~~~~g~~-l~p~~~~~~~~~  318 (369)
T 3ec1_A          272 -GGRRSFVCYMANELTVHR-TKLEKADSLYANQLGEL-LSPPSKRYAAEF  318 (369)
T ss_dssp             -SSSEEEEEEECTTSCEEE-EEGGGHHHHHHHHBTTT-BCSSCGGGTTTC
T ss_pred             -CCCceEEEEecCCccccc-ccHHHHHHHHHHhcCCc-cCCCCchhhhhc
Confidence             124789999999998754 23333344444444433 555565554444

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.57  E-value=6.5e-15  Score=144.32  Aligned_cols=170  Identities=15%  Similarity=0.107  Sum_probs=77.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCC------Ccee--eEEEEEEecCCc--cEEEEeCCCcccCCCC---
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------NTTT--HEVLGVMTKADT--QICIFDTPGLMLNKSG---  203 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~------~tt~--~~~~~~~~~~~~--~i~l~DtpG~~~~~~~---  203 (424)
                      ...++|+++|++|+|||||+|+|++.........+      ..|.  ......+...+.  .+.+|||||+......   
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            34688999999999999999999876443222111      1122  111111222333  6899999999543210   


Q ss_pred             -CCh-hhhhhHHHHHHhhcc----------cccEEEEEEeCC-CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          204 -YSH-KDVKVRVESAWSAVN----------LFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       204 -~~~-~~~~~~~~~~~~~~~----------~aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                       ... ..+...+...+....          .+|+++|+++.+ ..+...+.   .+++.+.    .+.|+|+|+||+|+.
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~---~~~~~l~----~~~piIlV~NK~Dl~  187 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIH----NKVNIVPVIAKADTL  187 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH---HHHHHTC----S-SCEEEEEECCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH---HHHHHhc----cCCCEEEEEECCCCC
Confidence             000 111111122222211          235788888763 33332222   3444443    257899999999998


Q ss_pred             CChhhHH--HHHHHHhcCCCCCeEEEEecCCCcChHHH----HHHHHHhcc
Q 014461          271 TKKKDLL--KVAEQFKHLPGYERIFMTSGLKGAGLKAL----TQYLMEQAV  315 (424)
Q Consensus       271 ~~~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~L----~~~i~~~l~  315 (424)
                      ...+...  .....+....++. ++++||++|.| ++.    .+.|.+.++
T Consensus       188 ~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          188 TLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             CHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            7432211  2444555555654 89999999987 544    444544443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.57  E-value=5.1e-15  Score=134.65  Aligned_cols=153  Identities=19%  Similarity=0.206  Sum_probs=93.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCceeeE--------EEEEE------------------ecCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHE--------VLGVM------------------TKAD  186 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~tt~~~--------~~~~~------------------~~~~  186 (424)
                      +..+|+++|.+|||||||+++|++.     +.+.+...++++.+.        ....+                  ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            5678999999999999999999864     233344444322100        00001                  1234


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+.+|||+|......     .          ....++.+++|+|++.+..    ....+....      +.|.++|+||
T Consensus       109 ~d~iiidt~G~~~~~~-----~----------~~~~~~~~i~vvd~~~~~~----~~~~~~~~~------~~~~iiv~NK  163 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV-----D----------FDLGENYRVVMVSVTEGDD----VVEKHPEIF------RVADLIVINK  163 (221)
T ss_dssp             CSEEEEEEEEBSSGGG-----G----------CCCSCSEEEEEEEGGGCTT----HHHHCHHHH------HTCSEEEEEC
T ss_pred             CCEEEEeCCCCCCCCc-----h----------hccccCcEEEEEeCCCcch----hhhhhhhhh------hcCCEEEEec
Confidence            5788999999521100     0          0013578999999975421    111222222      2678999999


Q ss_pred             CCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          267 VDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       267 ~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +|+.... .......+.+.......+++++||++|.|+++++++|.+.+.
T Consensus       164 ~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          164 VALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             GGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             ccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            9986421 123333333333233346999999999999999999998774

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.56  E-value=1.2e-16  Score=156.92  Aligned_cols=195  Identities=14%  Similarity=0.154  Sum_probs=113.8

Q ss_pred             CCCCCCCCcc----ChhhHHHH-HHhcCC---eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 014461           62 DPQNNNAAKK----QEPTWDEK-YRERTD---RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV  132 (424)
Q Consensus        62 ~~k~Dl~~~~----~~~~~~~~-~~~~~~---~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  132 (424)
                      .||+||.+.+    ..+.|... +...|.   .++++|+ ++.|..++.              ..+....          
T Consensus       103 ~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~--------------~~l~~~~----------  158 (368)
T 3h2y_A          103 GNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELA--------------DAIEYYR----------  158 (368)
T ss_dssp             EECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHH--------------HHHHHHH----------
T ss_pred             EEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHH--------------hhhhhhc----------
Confidence            4588998765    35567554 455565   6788888 888887661              1111111          


Q ss_pred             hhhcccceEEEEEecCCCChhHHHHhHhCCc------ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh
Q 014461          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH  206 (424)
Q Consensus       133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~~~------~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~  206 (424)
                           ...+|+++|.+|+|||||+|+|++..      ...++..++||+......+   +..+.++||||+..... .. 
T Consensus       159 -----~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~-~~-  228 (368)
T 3h2y_A          159 -----GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQ-MA-  228 (368)
T ss_dssp             -----TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTS-GG-
T ss_pred             -----ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcHHH-HH-
Confidence                 23579999999999999999999853      4557889999987665432   22389999999976531 11 


Q ss_pred             hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461          207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (424)
Q Consensus       207 ~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~  286 (424)
                      ..+..............+.+++++|+............+++.      ..+.|+++++||+|.... .......+.+.+.
T Consensus       229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~------~~~~~~~~v~nk~d~~~~-~~~~~~~~~~~~~  301 (368)
T 3h2y_A          229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVS------GGRRAFTCHFSNRLTIHR-TKLEKADELYKNH  301 (368)
T ss_dssp             GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEE------SSSEEEEEEECTTSCEEE-EEHHHHHHHHHHH
T ss_pred             HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEec------CCCceEEEEecCcccccc-ccHHHHHHHHHHH
Confidence            111111111222246678999999884211100100011111      124789999999999864 3445555555555


Q ss_pred             CCCCeEEEEecC
Q 014461          287 PGYERIFMTSGL  298 (424)
Q Consensus       287 ~~~~~~~~iSA~  298 (424)
                      .+.. +.+.++.
T Consensus       302 ~g~~-l~p~~~~  312 (368)
T 3h2y_A          302 AGDL-LSPPTPE  312 (368)
T ss_dssp             BTTT-BCSSCHH
T ss_pred             hCCc-cCCCchh
Confidence            5543 4455544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=5.2e-15  Score=155.34  Aligned_cols=159  Identities=16%  Similarity=0.292  Sum_probs=110.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC-----cceee------cCCC------CceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT-----KVAAV------SRKT------NTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~-----~~~~~------~~~~------~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ..+|+|+|+.++|||||..+|+..     +...+      .+..      +.|.......+.+.+..++|+||||+.++.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            467999999999999999999721     11111      1111      233333333366788999999999998662


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHH
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE  281 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~  281 (424)
                               ..+.   ..++.+|++|+|+|+..+...+...+++.+.+.+      .|.++++||+|....+  .....+
T Consensus        82 ---------~Ev~---raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~------lp~i~~INKmDr~~a~--~~~~~~  141 (638)
T 3j25_A           82 ---------AEVY---RSLSVLDGAILLISAKDGVQAQTRILFHALRKMG------IPTIFFINKIDQNGID--LSTVYQ  141 (638)
T ss_dssp             ---------HHHH---HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT------CSCEECCEECCSSSCC--SHHHHH
T ss_pred             ---------HHHH---HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC------CCeEEEEeccccccCC--HHHHHH
Confidence                     2233   4456789999999999998888777777777764      7889999999986532  111111


Q ss_pred             HHhcC---------------------------------------------------------------CCCCeEEEEecC
Q 014461          282 QFKHL---------------------------------------------------------------PGYERIFMTSGL  298 (424)
Q Consensus       282 ~~~~~---------------------------------------------------------------~~~~~~~~iSA~  298 (424)
                      ++.+.                                                               ..+.+++..||+
T Consensus       142 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~  221 (638)
T 3j25_A          142 DIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAK  221 (638)
T ss_dssp             HHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCST
T ss_pred             HHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccc
Confidence            11110                                                               122357788999


Q ss_pred             CCcChHHHHHHHHHhccCC
Q 014461          299 KGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l~~~  317 (424)
                      +|.|++.|++.|.+.++..
T Consensus       222 ~~~Gv~~LLd~i~~~~p~p  240 (638)
T 3j25_A          222 SNIGIDNLIEVITNKFYSS  240 (638)
T ss_dssp             TCCSHHHHHHHHHHSCCCS
T ss_pred             cCCCchhHhhhhhccccCc
Confidence            9999999999999988643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.6e-14  Score=126.90  Aligned_cols=120  Identities=14%  Similarity=0.195  Sum_probs=73.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+.++|+++|.+|||||||+|+|.+..+...  +..+.++       ....+..+.+|||||.......     ....+ 
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~-  112 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYK-----LSDYL-  112 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-----HHHHH-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-------eeecCCeEEEEECCCCchHHHH-----HHHHH-
Confidence            4678999999999999999999998764321  1112121       1225678999999998755321     11111 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC----CCCCCcEEEEEecCCCCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~----~~~~~p~ilV~NK~Dl~~~  272 (424)
                        ...+..+|++++|+|++.. ......+..++..+...    ...+.|+++|+||+|+...
T Consensus       113 --~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          113 --KTRAKFVKGLIFMVDSTVD-PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             --HHHGGGEEEEEEEEETTCC-HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             --HhhcccCCEEEEEEECCCC-chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence              2233568999999999611 11222333333332111    1235899999999999865

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.52  E-value=1e-16  Score=160.23  Aligned_cols=239  Identities=16%  Similarity=0.137  Sum_probs=132.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC------CcceeecCCCC------------------------ceeeEE----EEEEec
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTN------------------------TTTHEV----LGVMTK  184 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~------------------------tt~~~~----~~~~~~  184 (424)
                      +..|+++|.+|+||||+++.|.+      .++..+...++                        ++++..    ......
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            46799999999999999999875      22322221111                        222110    000012


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCC-c-EEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ-K-RVL  262 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~-p-~il  262 (424)
                      .+.+++++||||.....     ......+. ....+..+|.+++|+|+..+.   +  .....+.+..    .. | ..+
T Consensus       179 ~~~D~vIIDT~G~~~~~-----~~l~~~l~-~i~~~~~~d~vllVvda~~g~---~--~~~~~~~~~~----~~~~i~gv  243 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEE-----KGLLEEMK-QIKEITNPDEIILVIDGTIGQ---Q--AGIQAKAFKE----AVGEIGSI  243 (432)
T ss_dssp             SSCSEEEEECCCSCSSH-----HHHHHHHH-HTTSSSCCSEEEEEEEGGGGG---G--HHHHHHHHHT----TSCSCEEE
T ss_pred             hCCCEEEEcCCCCcccc-----HHHHHHHH-HHHHHhcCcceeEEeeccccH---H--HHHHHHHHhh----cccCCeEE
Confidence            56789999999976321     11111121 233444689999999996532   1  2223333331    23 4 789


Q ss_pred             EEecCCCCCChhhHHHHHHHHh-------------cCCCCCeEEEEecCCCcC-hHHHHHHHHHhccCCCCCCCCCCcch
Q 014461          263 CMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQAVQRPWSEDPLTMSE  328 (424)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~~~~~~~~~~~~~~  328 (424)
                      |+||+|..............+.             ....+.+..++|+..|.| +..|++.+.+.+.       ... ++
T Consensus       244 VlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~-------e~~-~~  315 (432)
T 2v3c_C          244 IVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD-------EKT-EE  315 (432)
T ss_dssp             EEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC-------SSS-ST
T ss_pred             EEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH-------hhh-HH
Confidence            9999998653232333322221             111223344567777777 7777666655432       122 33


Q ss_pred             hhHHHHHHHHHHHHHHhhcCc------------cCCcceEE-EEEEEEeccCCeEEEEEEEE----eeCCCcccEEeccC
Q 014461          329 EVMKNISLEVVRERLLDHVHQ------------EIPYSIEH-RLIDWKDLRDGSLRIEQHLI----TNKLSQRKILVGKN  391 (424)
Q Consensus       329 ~~~~~~~~e~ire~l~~~l~~------------eip~~~~~-~~~~~~~~~~~~~~i~~~i~----~~~~s~k~ivig~~  391 (424)
                      ...+....++.++.+++.+.+            ++||.... ..+++...+++..++.+.|+    +||++|+-|    +
T Consensus       316 ~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i----~  391 (432)
T 2v3c_C          316 SIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII----K  391 (432)
T ss_dssp             THHHHCCSCCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC----C
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc----C
Confidence            333433446778888888886            99995332 22344322223467788888    999999943    7


Q ss_pred             CchHHHHHHHHHH
Q 014461          392 GSKIGRIGVEANE  404 (424)
Q Consensus       392 g~~i~~i~~~~~~  404 (424)
                      |+++++|+..|+.
T Consensus       392 ~sr~~rI~~gsg~  404 (432)
T 2v3c_C          392 ASRIRRIARGSGT  404 (432)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhcCC
Confidence            9999999999964

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.51  E-value=3.6e-14  Score=137.94  Aligned_cols=90  Identities=21%  Similarity=0.263  Sum_probs=62.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcccCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNK  201 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~  201 (424)
                      ..+|+++|.||||||||+|+|++.. +.+++.+++|.....+.+...+                 ..+.+|||||+....
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            3689999999999999999999877 4578888888876665555544                 469999999987542


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~  234 (424)
                      .     .........+..++.+|++++|+|+++
T Consensus        81 ~-----~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 S-----KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             H-----HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             c-----ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            1     001111223345678999999999975

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.51  E-value=2.1e-16  Score=160.24  Aligned_cols=249  Identities=14%  Similarity=0.099  Sum_probs=137.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCce-----------e--eEEEEE----------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-----------T--HEVLGV----------------  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt-----------~--~~~~~~----------------  181 (424)
                      .+...|+++|.+||||||+++.|.      |.++..++..+...           +  -.....                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346789999999999999999998      76665554422110           0  001110                


Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-  260 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-  260 (424)
                      +...+.+++||||||.....     ..+...+..... +..+|.+++|+|+..+..  .......+.+.       .|+ 
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-------~~i~  243 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-------VDVA  243 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-------HCCC
T ss_pred             HHHCCCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-------cCce
Confidence            01156789999999986421     111111222222 226899999999976432  22222223221       354 


Q ss_pred             EEEEecCCCCCChhhHHHHHHHHh-------------cCCCCCeEEEEecCCCcC-hHHHHHHHHHhccCCCCCCCCCCc
Q 014461          261 VLCMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQAVQRPWSEDPLTM  326 (424)
Q Consensus       261 ilV~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~~~~~~~~~~~~  326 (424)
                      .+|+||+|..............+.             ....+.+.+++|+..|.| +++|++++.+...+..........
T Consensus       244 gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~  323 (504)
T 2j37_W          244 SVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLK  323 (504)
T ss_dssp             CEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCT
T ss_pred             EEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999998754333333333221             111233456689999999 999999998762110101111111


Q ss_pred             chhhHHHHHHHHHHHHHH--------hhcCccCCcceE--EEEEEEEeccCCeEEEEEEEE----eeCCCcc-cEEeccC
Q 014461          327 SEEVMKNISLEVVRERLL--------DHVHQEIPYSIE--HRLIDWKDLRDGSLRIEQHLI----TNKLSQR-KILVGKN  391 (424)
Q Consensus       327 ~~~~~~~~~~e~ire~l~--------~~l~~eip~~~~--~~~~~~~~~~~~~~~i~~~i~----~~~~s~k-~ivig~~  391 (424)
                      +.+    +..+-+.+.+.        ..+-..+|+...  .....+...+++.-++.+.|.    .||++|+ +.|||++
T Consensus       324 ~g~----~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~  399 (504)
T 2j37_W          324 HGQ----FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQ  399 (504)
T ss_dssp             TSG----GGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHC
T ss_pred             cCC----CCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCC
Confidence            111    01111122222        224557888532  111111111122234444555    7899999 9999999


Q ss_pred             CchHHHHHHHHHH
Q 014461          392 GSKIGRIGVEANE  404 (424)
Q Consensus       392 g~~i~~i~~~~~~  404 (424)
                      |+++++|+..++.
T Consensus       400 ~sr~~ria~gsg~  412 (504)
T 2j37_W          400 PGRIQRVARGSGV  412 (504)
T ss_dssp             THHHHHHHHHTTC
T ss_pred             hHHHHHHHHhcCC
Confidence            9999999998875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.50  E-value=2.5e-14  Score=142.09  Aligned_cols=218  Identities=14%  Similarity=0.122  Sum_probs=98.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecC------CCCceeeEEEEE-EecCC--ccEEEEeCCCcccCCCCC-Chh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR------KTNTTTHEVLGV-MTKAD--TQICIFDTPGLMLNKSGY-SHK  207 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~------~~~tt~~~~~~~-~~~~~--~~i~l~DtpG~~~~~~~~-~~~  207 (424)
                      -.++|+++|++|||||||+|+|+|......+.      ...++.....+. +...+  ..+.+|||||+....... ...
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            35789999999999999999999876532111      111222111111 11122  258899999987542110 001


Q ss_pred             hhhh----HHHHH--------Hhhccc--ccEEEEEEeCC-CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          208 DVKV----RVESA--------WSAVNL--FEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       208 ~~~~----~~~~~--------~~~~~~--aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      .+..    .+...        ...+.+  +++++++++.+ .++...+   ..++..+..    +.|+|+|+||+|+...
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d---~~~lk~L~~----~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD---IEFMKRLHE----KVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH---HHHHHHHTT----TSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH---HHHHHHHhc----cCcEEEEEEcccCccH
Confidence            1100    11111        111233  34566666654 3443333   244555431    4789999999999864


Q ss_pred             hhhHH---HHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCc
Q 014461          273 KKDLL---KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQ  349 (424)
Q Consensus       273 ~~~~~---~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~  349 (424)
                      . .+.   ..+.......+.. ++++||+++.++++++..|                                     .+
T Consensus       183 ~-ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l-------------------------------------~~  223 (418)
T 2qag_C          183 E-ECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKI-------------------------------------KD  223 (418)
T ss_dssp             H-HHHHHHHHHHHHHHHHTCC-CCCCC-----------------------------------------------------
T ss_pred             H-HHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHH-------------------------------------Hh
Confidence            3 222   2222222223443 7888998888776544333                                     34


Q ss_pred             cCCcceEEEEEEEEeccCCeE----EEEEEEEeeCCCccc------EEeccCCchHHHHHHHH
Q 014461          350 EIPYSIEHRLIDWKDLRDGSL----RIEQHLITNKLSQRK------ILVGKNGSKIGRIGVEA  402 (424)
Q Consensus       350 eip~~~~~~~~~~~~~~~~~~----~i~~~i~~~~~s~k~------ivig~~g~~i~~i~~~~  402 (424)
                      ++||++......+.. .+..+    ++.+.+.|++++|..      ++||.+..-+++.....
T Consensus       224 ~iPfavv~s~~~~~~-~g~~vr~R~y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~  285 (418)
T 2qag_C          224 RLPLAVVGSNTIIEV-NGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNV  285 (418)
T ss_dssp             -CCEEECC--------------CEECSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHH
T ss_pred             hCCcceeecceeEec-CCceeecccccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence            455554322222221 11122    255678899999984      58899998888877654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.50  E-value=4.1e-14  Score=138.39  Aligned_cols=89  Identities=22%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---------------------CccEEEEeCCCcc
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---------------------DTQICIFDTPGLM  198 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---------------------~~~i~l~DtpG~~  198 (424)
                      ++|+++|.||||||||+|+|++.. +.+++.+++|.....+.....                     +..+.+|||||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            468999999999999999999865 346777777776655554322                     3469999999997


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~  234 (424)
                      ......  .   ......+..++.+|++++|+|+++
T Consensus        81 ~~a~~~--~---~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKG--E---GLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSS--S---CTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccc--c---hHHHHHHHHHHhCCEEEEEEECCC
Confidence            643210  1   112334456788999999999975

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.49  E-value=3.1e-14  Score=133.00  Aligned_cols=172  Identities=18%  Similarity=0.172  Sum_probs=100.4

Q ss_pred             cccceEEEEEecCCCChhHHHHhHh-----CCcceeecCCCCceee------------EEEEEE----------------
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNTTTH------------EVLGVM----------------  182 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~-----~~~~~~~~~~~~tt~~------------~~~~~~----------------  182 (424)
                      ..+...++++|.+|||||||++.|.     |.++..+...++.+..            ......                
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR   90 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence            3456788999999999999999998     7777666655542110            000000                


Q ss_pred             -------------e-cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHH-HHHH-
Q 014461          183 -------------T-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSR-VIRL-  246 (424)
Q Consensus       183 -------------~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~-~~~~-  246 (424)
                                   . ..+.++.+|||||...+..      ...........+.. +++++++|++......+.. .... 
T Consensus        91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~  163 (262)
T 1yrb_A           91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFL------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA  163 (262)
T ss_dssp             HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence                         0 0134799999999864310      00001122234456 8999999986433222211 1111 


Q ss_pred             HHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHH-------HHH------------------hcCCCCCeEEEEecCC
Q 014461          247 IERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA-------EQF------------------KHLPGYERIFMTSGLK  299 (424)
Q Consensus       247 l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~-------~~~------------------~~~~~~~~~~~iSA~~  299 (424)
                      ......   .+.|+++|+||+|+.....  ...+..       +.+                  .......+++++||++
T Consensus       164 ~~~~~~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~  240 (262)
T 1yrb_A          164 LLIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT  240 (262)
T ss_dssp             HHHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTT
T ss_pred             HHHhcc---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecC
Confidence            111111   1378999999999976421  111111       111                  1112222589999999


Q ss_pred             CcChHHHHHHHHHhccCC
Q 014461          300 GAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~~~  317 (424)
                      |.|+++|+++|.+.++.+
T Consensus       241 ~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          241 REGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhccc
Confidence            999999999999887644

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.45  E-value=6.9e-13  Score=140.96  Aligned_cols=117  Identities=20%  Similarity=0.273  Sum_probs=78.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-----ceeecC------------CCCceeeEEEEEEec-------CCccEEEE
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSR------------KTNTTTHEVLGVMTK-------ADTQICIF  192 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~------------~~~tt~~~~~~~~~~-------~~~~i~l~  192 (424)
                      .+..+|+|+|+.++|||||..+|+...     ...+..            .-+.|.......+.+       +++.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            356899999999999999999997311     111111            112222221112222       25689999


Q ss_pred             eCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       193 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ||||+.++.         ..+.+   .++.+|++|+|+|+..+...+...+++...+.+      .|.++++||+|...
T Consensus        91 DTPGHvDF~---------~Ev~~---aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~------lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFT---------IEVER---SLRVLDGAVVVFCGTSGVEPQSETVWRQANKYG------VPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCH---------HHHHH---HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHT------CCEEEEEECSSSTT
T ss_pred             eCCCCcccH---------HHHHH---HHHHhCeEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEccccccC
Confidence            999998762         22333   456679999999999988877777777666654      78999999999865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.40  E-value=4.9e-13  Score=127.70  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=78.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCC-------CCceeeEEEEE-EecC--CccEEEEeCCCcccCCCC-CCh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-------TNTTTHEVLGV-MTKA--DTQICIFDTPGLMLNKSG-YSH  206 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-------~~tt~~~~~~~-~~~~--~~~i~l~DtpG~~~~~~~-~~~  206 (424)
                      -.++|+++|++|||||||+|+|.+......+..       ..+......+. ....  ...+.+|||||+...... ...
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            468899999999999999999988632212111       01111111111 2212  346899999998432110 000


Q ss_pred             hhhhh----HHHHHHhhc----------ccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          207 KDVKV----RVESAWSAV----------NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       207 ~~~~~----~~~~~~~~~----------~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ..+..    .....+..+          ..+++++++.+.+.. +...+   .++++.+.    ...|+++|+||+|+..
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~---~~~l~~l~----~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD---VAFMKAIH----NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH---HHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH---HHHHHHHH----hcCCEEEEEEeCCCCC
Confidence            11111    111222211          123456666665432 33322   24555543    2368999999999986


Q ss_pred             Chh--hHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          272 KKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       272 ~~~--~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ..+  ...+....+....+. .++++||++| |++++++.+.+.+.
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhh
Confidence            422  122333444444455 4899999999 99999998887664

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.39  E-value=1.1e-12  Score=119.45  Aligned_cols=154  Identities=14%  Similarity=0.226  Sum_probs=84.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc-----ceeecCCCCceee--------EEEEEEe--------------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNTTTH--------EVLGVMT--------------------  183 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~~~~tt~~--------~~~~~~~--------------------  183 (424)
                      .+.++|+++|.+|||||||+++|+...     .+.+...++++.+        .....+.                    
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            356899999999999999999998642     2222222221100        0000011                    


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      ..+..++++||+|......             .+.  ...+.++.++|+......... ....   +      ..|.++|
T Consensus       116 ~~~~d~~~id~~g~i~~~~-------------s~~--~~~~~~~~v~~~~~~~~~~~~-~~~~---~------~~~~iiv  170 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICPA-------------DFD--LGTHKRIVVISTTEGDDTIEK-HPGI---M------KTADLIV  170 (226)
T ss_dssp             GGGCSEEEEECCSCSSGGG-------------GCC--CSCSEEEEEEEGGGCTTTTTT-CHHH---H------TTCSEEE
T ss_pred             cCCCCEEEEeCCCCccCcc-------------hhh--hccCcEEEEEecCcchhhHhh-hhhH---h------hcCCEEE
Confidence            0112567777777432100             000  123455677775322111111 0111   1      2578999


Q ss_pred             EecCCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          264 MNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       264 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +||+|+.... .......+.+.......+++++||++|.|+++++++|.+.+.
T Consensus       171 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          171 INKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            9999986421 122222223332223346999999999999999999987663

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.36  E-value=4.6e-13  Score=144.59  Aligned_cols=116  Identities=20%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecC---------------CCCceeeEEEEEEec----------------C
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR---------------KTNTTTHEVLGVMTK----------------A  185 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~---------------~~~tt~~~~~~~~~~----------------~  185 (424)
                      .+..+|+++|++|+|||||+++|++........               ..+.|.......+.+                .
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            356899999999999999999998642211111               112222211111222                2


Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +..+.||||||+.++.         ...   ...+..+|++|+|+|++++.......++..+...      +.|+++|+|
T Consensus        97 ~~~i~liDTPG~~df~---------~~~---~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~------~~p~ilviN  158 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFS---------SEV---TAALRVTDGALVVVDTIEGVCVQTETVLRQALGE------RIKPVVVIN  158 (842)
T ss_dssp             EEEEEEECCCCCCSSC---------HHH---HHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCEEEEEEE
T ss_pred             CceEEEEECcCchhhH---------HHH---HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCeEEEEE
Confidence            5679999999997652         112   2345678999999999877655544433333322      478999999


Q ss_pred             cCCCC
Q 014461          266 KVDLV  270 (424)
Q Consensus       266 K~Dl~  270 (424)
                      |+|+.
T Consensus       159 K~D~~  163 (842)
T 1n0u_A          159 KVDRA  163 (842)
T ss_dssp             CHHHH
T ss_pred             CCCcc
Confidence            99986

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.32  E-value=3.4e-13  Score=132.40  Aligned_cols=194  Identities=13%  Similarity=0.136  Sum_probs=92.1

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCc
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGL  197 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~  197 (424)
                      ....+.+|+++|.||||||||+|+|++... .+++.+++|.....+.+...+                 .++.+|||||+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl   96 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL   96 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence            345578999999999999999999999876 678889999877666655443                 24899999999


Q ss_pred             ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH
Q 014461          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL  277 (424)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~  277 (424)
                      ......     ........+..++.+|++++|+|+++.     ..+.. +...      ..|    +|++|.... +...
T Consensus        97 ~~~as~-----~~glg~~~l~~ir~aD~Il~VvD~~~~-----~~i~~-v~~~------~dP----~~di~~i~~-El~l  154 (396)
T 2ohf_A           97 VKGAHN-----GQGLGNAFLSHISACDGIFHLTRAFED-----DDITH-VEGS------VDP----IRDIEIIHE-ELQL  154 (396)
T ss_dssp             ---------------CCHHHHHHHTSSSEEEEEEC------------------------CTT----HHHHHHHHH-HHHH
T ss_pred             ccccch-----hhHHHHHHHHHHHhcCeEEEEEecCCC-----cchhh-hcCC------CCh----HHHHHHhhh-hhhh
Confidence            764321     011112344567889999999999631     11111 1110      123    455554432 1111


Q ss_pred             HHHHHHhcCCCCCeEEEEe--cCCCcChHHHHHHHHHhccCC-CCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcc
Q 014461          278 KVAEQFKHLPGYERIFMTS--GLKGAGLKALTQYLMEQAVQR-PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYS  354 (424)
Q Consensus       278 ~~~~~~~~~~~~~~~~~iS--A~~g~gi~~L~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~  354 (424)
                      ...+.+............|  ++.+.+..++++.+.+.+.++ ++......++.+     ..+++ +.++....+++||.
T Consensus       155 ~d~~~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~-----e~e~i-~~~~llt~KPviy~  228 (396)
T 2ohf_A          155 KDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDK-----EIEVL-NKHLFLTSKPMVYL  228 (396)
T ss_dssp             HHHHHHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHH-----HHHHH-HHHCCGGGSCEEEE
T ss_pred             hhHHHHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHH-----HHHHH-HHHHHHhCCceEEE
Confidence            1111111111111122344  577788999999999998776 432100112222     12344 45555667778776


Q ss_pred             eEE
Q 014461          355 IEH  357 (424)
Q Consensus       355 ~~~  357 (424)
                      +.+
T Consensus       229 ~Nv  231 (396)
T 2ohf_A          229 VNL  231 (396)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.28  E-value=5.2e-11  Score=117.90  Aligned_cols=193  Identities=17%  Similarity=0.158  Sum_probs=113.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc----ceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK----VAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKV  211 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~----~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~  211 (424)
                      .....++++|++|||||||+|.|.|..    .........+|+...  ++... ..++.++|+||+....     .....
T Consensus        67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~-----~~~~~  139 (413)
T 1tq4_A           67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN-----FPPDT  139 (413)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS-----CCHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH-----HHHHH
Confidence            456789999999999999999999832    211222222333211  22222 2368999999986431     11111


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC-----------ChhhHHHHH
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-----------KKKDLLKVA  280 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~-----------~~~~~~~~~  280 (424)
                      .+...  .+...+..++ ++... .......+...+...      +.|+++|+||.|+.-           .+..+.+.+
T Consensus       140 ~L~~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l  209 (413)
T 1tq4_A          140 YLEKM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI  209 (413)
T ss_dssp             HHHHT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             HHHHc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence            12111  2334455555 77642 233344555566554      378999999998741           123344444


Q ss_pred             HHHh-----cC-CCCCeEEEEec--CCCcChHHHHHHHHHhccCCCCCCC-----C-CCcchhhHHHHHHHHHHHHHHhh
Q 014461          281 EQFK-----HL-PGYERIFMTSG--LKGAGLKALTQYLMEQAVQRPWSED-----P-LTMSEEVMKNISLEVVRERLLDH  346 (424)
Q Consensus       281 ~~~~-----~~-~~~~~~~~iSA--~~g~gi~~L~~~i~~~l~~~~~~~~-----~-~~~~~~~~~~~~~e~ire~l~~~  346 (424)
                      ..+.     +. .....+|++|+  .++.|+++|.+.|.+.++++++.+.     . ...+.+..+....+.+++..+..
T Consensus       210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~a  289 (413)
T 1tq4_A          210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAA  289 (413)
T ss_dssp             HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            4442     22 23446899999  6777899999999999998875542     2 22223444555667777766544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.27  E-value=1.2e-11  Score=121.66  Aligned_cols=94  Identities=19%  Similarity=0.264  Sum_probs=71.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLM  198 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~  198 (424)
                      ...+.+++++|.||||||||+|+|++...+.+++.|++|.....+.+...+                 ..+.++||||+.
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            345789999999999999999999998876789999999888777766554                 358999999987


Q ss_pred             cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (424)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~  234 (424)
                      ......  +.+   ....+..+..+|++++|+|+.+
T Consensus        97 ~~~s~~--e~L---~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTG--VGL---GNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSS--SSS---CHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHH--HHH---HHHHHHHHHHHHHHHHHHhccc
Confidence            543211  111   1223455678899999999864

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.24  E-value=8.7e-12  Score=121.33  Aligned_cols=122  Identities=14%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC--------CchHHHHHHHHHhccC
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT--------SPDSRVIRLIERMGKQ  253 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~--------~~~~~~~~~l~~~~~~  253 (424)
                      +..++..+.+|||+|.......            ....+.+++++|+|+|+++.-+        .....+..++..+...
T Consensus       188 ~~~~~~~l~iwDt~GQe~~r~~------------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~  255 (353)
T 1cip_A          188 FTFKDLHFKMFDVGGQRSERKK------------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN  255 (353)
T ss_dssp             EEETTEEEEEEEECCSGGGGGG------------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             EeeCCeeEEEEeCCCchhhhHH------------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence            4456778999999998754321            1235678999999999975211        1223455566555432


Q ss_pred             -CCCCCcEEEEEecCCCCCCh----------------hhHHHHHH----HHhcC-----CCCCeEEEEecCCCcChHHHH
Q 014461          254 -APPKQKRVLCMNKVDLVTKK----------------KDLLKVAE----QFKHL-----PGYERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       254 -~~~~~p~ilV~NK~Dl~~~~----------------~~~~~~~~----~~~~~-----~~~~~~~~iSA~~g~gi~~L~  307 (424)
                       ...+.|+++|+||+|+...+                ....+..+    .+...     .....++++||++|.||+++|
T Consensus       256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF  335 (353)
T 1cip_A          256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF  335 (353)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence             22458999999999985211                11111111    11122     112258899999999999999


Q ss_pred             HHHHHhcc
Q 014461          308 QYLMEQAV  315 (424)
Q Consensus       308 ~~i~~~l~  315 (424)
                      +++.+.+.
T Consensus       336 ~~v~~~i~  343 (353)
T 1cip_A          336 DAVTDVII  343 (353)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.20  E-value=5.5e-12  Score=120.08  Aligned_cols=121  Identities=17%  Similarity=0.162  Sum_probs=82.3

Q ss_pred             CCCCcEEEEeCCCCccCCC-C--------------------CCCCCCCccC----hhhHHHHHHhcCCeEEEeec-cccc
Q 014461           43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ----EPTWDEKYRERTDRIVFGEE-AQKG   96 (424)
Q Consensus        43 ~~~~d~vie~~dar~p~~~-~--------------------~k~Dl~~~~~----~~~~~~~~~~~~~~i~f~~~-~~~~   96 (424)
                      +..+|.++++.|++.|.++ +                    ||+||++++.    .+.|..+|...|+.+++.++ ++.|
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g  163 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDS  163 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred             HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            4578999999999987776 3                    2669988754    68899999999999999988 7777


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-----
Q 014461           97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----  171 (424)
Q Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-----  171 (424)
                      ...+                                 .....+..++++|++|||||||+|.|.+.....++...     
T Consensus       164 ~~~L---------------------------------~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~  210 (307)
T 1t9h_A          164 LADI---------------------------------IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGR  210 (307)
T ss_dssp             CTTT---------------------------------GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------
T ss_pred             HHHH---------------------------------HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCC
Confidence            7766                                 11123568999999999999999999986543332222     


Q ss_pred             --CceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          172 --NTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       172 --~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                        ++|+....  +...  ...++||||+..+
T Consensus       211 G~~tt~~~~~--~~~~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          211 GKHTTRHVEL--IHTS--GGLVADTPGFSSL  237 (307)
T ss_dssp             ----CCCCCE--EEET--TEEEESSCSCSSC
T ss_pred             CcccccHHHH--hhcC--CEEEecCCCcccc
Confidence              34443221  1121  3489999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.09  E-value=5.8e-11  Score=115.20  Aligned_cols=121  Identities=18%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             CCCCcEEEEeCCCCccCCC---------------------CCCCCCCCccC---hhhHHHHHHhcCCeEEEeec-ccccc
Q 014461           43 ENDCDSVFDSSYFRIPTID---------------------DPQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKGK   97 (424)
Q Consensus        43 ~~~~d~vie~~dar~p~~~---------------------~~k~Dl~~~~~---~~~~~~~~~~~~~~i~f~~~-~~~~~   97 (424)
                      ...+|.++.+ +|+.|.++                     .||+||++++.   .+.|..+|...|+.+++.++ ++.|.
T Consensus       128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl  206 (358)
T 2rcn_A          128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGL  206 (358)
T ss_dssp             EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTH
T ss_pred             HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCH
Confidence            3467777755 66666554                     33779988765   66899999999999999998 77777


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcc-eeecCCC-----
Q 014461           98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT-----  171 (424)
Q Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~-~~~~~~~-----  171 (424)
                      ..+          .        ..               ..+..++++|++|||||||+|.|.|... ...+...     
T Consensus       207 ~~L----------~--------~~---------------~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~  253 (358)
T 2rcn_A          207 KPL----------E--------EA---------------LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL  253 (358)
T ss_dssp             HHH----------H--------HH---------------HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------
T ss_pred             HHH----------H--------Hh---------------cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCC
Confidence            666          0        00               1245789999999999999999998654 3222211     


Q ss_pred             --CceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          172 --NTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       172 --~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                        ++|+....+.+..+   ..++||||+.++
T Consensus       254 g~~tt~~~~i~~v~q~---~~l~dtpgv~e~  281 (358)
T 2rcn_A          254 GQHTTTAARLYHFPHG---GDVIDSPGVREF  281 (358)
T ss_dssp             -----CCCEEEECTTS---CEEEECHHHHTC
T ss_pred             CccceEEEEEEEECCC---CEecCcccHHHh
Confidence              13333333333222   267999998653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.06  E-value=2.6e-10  Score=109.44  Aligned_cols=123  Identities=12%  Similarity=0.098  Sum_probs=76.6

Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC-------CCC-CCchHHHHHHHHHhccC
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH-------RHL-TSPDSRVIRLIERMGKQ  253 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~-------~~~-~~~~~~~~~~l~~~~~~  253 (424)
                      +..++..+.+|||+|....+..            ....+++++++|+|+|.+       +.. .........++..+...
T Consensus       162 ~~~~~v~l~iwDtgGQe~~R~~------------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~  229 (327)
T 3ohm_A          162 FDLQSVIFRMVDVGGQRSERRK------------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY  229 (327)
T ss_dssp             EEETTEEEEEEEECCSHHHHTT------------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred             EEeeceeeEEEEcCCchhHHHH------------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence            5556788999999998643211            123568899999999875       211 12223455555554332


Q ss_pred             -CCCCCcEEEEEecCCCCCCh-----------------hhHHHHH----HHHhcCC----CCCeEEEEecCCCcChHHHH
Q 014461          254 -APPKQKRVLCMNKVDLVTKK-----------------KDLLKVA----EQFKHLP----GYERIFMTSGLKGAGLKALT  307 (424)
Q Consensus       254 -~~~~~p~ilV~NK~Dl~~~~-----------------~~~~~~~----~~~~~~~----~~~~~~~iSA~~g~gi~~L~  307 (424)
                       ...+.|+++++||+|+...+                 ....+..    ..+....    ....++++||+++.||+.+|
T Consensus       230 ~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF  309 (327)
T 3ohm_A          230 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVF  309 (327)
T ss_dssp             GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred             hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHH
Confidence             22458999999999985421                 1112111    1222211    11236789999999999999


Q ss_pred             HHHHHhccC
Q 014461          308 QYLMEQAVQ  316 (424)
Q Consensus       308 ~~i~~~l~~  316 (424)
                      +.+.+.+..
T Consensus       310 ~~v~~~Il~  318 (327)
T 3ohm_A          310 AAVKDTILQ  318 (327)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.96  E-value=1.5e-09  Score=103.43  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=79.7

Q ss_pred             CCCCcEEEEeCCCCccC--------------------CC-CCCCCCCCcc---ChhhHHHHHHhcCCeEEEeec-ccccc
Q 014461           43 ENDCDSVFDSSYFRIPT--------------------ID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGK   97 (424)
Q Consensus        43 ~~~~d~vie~~dar~p~--------------------~~-~~k~Dl~~~~---~~~~~~~~~~~~~~~i~f~~~-~~~~~   97 (424)
                      ...+|.++.+-|++.|.                    +. .||+||.+..   ....|..++...++.++++|+ ++.|.
T Consensus        77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi  156 (302)
T 2yv5_A           77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGI  156 (302)
T ss_dssp             EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence            33677777777776554                    33 4688998765   257788888888888999999 88887


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC------
Q 014461           98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------  171 (424)
Q Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~------  171 (424)
                      ..+                                 .....+..++++|++|||||||+|.|. ......+...      
T Consensus       157 ~~L---------------------------------~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G  202 (302)
T 2yv5_A          157 DEL---------------------------------VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERG  202 (302)
T ss_dssp             HHH---------------------------------HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-------
T ss_pred             HHH---------------------------------HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCC
Confidence            766                                 111234568999999999999999998 5433222222      


Q ss_pred             -CceeeEEEEEEecCCccEEEEeCCCccc
Q 014461          172 -NTTTHEVLGVMTKADTQICIFDTPGLML  199 (424)
Q Consensus       172 -~tt~~~~~~~~~~~~~~i~l~DtpG~~~  199 (424)
                       ++|+.....  ... .--.++||||+..
T Consensus       203 ~~~t~~~~~~--~~~-~~g~v~d~pg~~~  228 (302)
T 2yv5_A          203 RHTTTGVRLI--PFG-KGSFVGDTPGFSK  228 (302)
T ss_dssp             --CCCCEEEE--EET-TTEEEESSCCCSS
T ss_pred             CCceeeEEEE--EcC-CCcEEEECcCcCc
Confidence             244433221  111 2247899999864

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.96  E-value=2.2e-09  Score=103.38  Aligned_cols=79  Identities=15%  Similarity=0.119  Sum_probs=51.2

Q ss_pred             EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC--------CCCchHHHHHHHHHhcc
Q 014461          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--------LTSPDSRVIRLIERMGK  252 (424)
Q Consensus       181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~--------~~~~~~~~~~~l~~~~~  252 (424)
                      .+..++..+.+|||+|....            -......++.++++|+|+|.++-        ..........++..+..
T Consensus       155 ~~~~~~v~l~iwDtaGQe~~------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~  222 (340)
T 4fid_A          155 DFVVKDIPFHLIDVGGQRSE------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT  222 (340)
T ss_dssp             EEESSSCEEEEEECCSCHHH------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred             EEEeeeeeeccccCCCcccc------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence            35567788999999998532            11223457899999999999720        11222344455554432


Q ss_pred             C-CCCCCcEEEEEecCCCCC
Q 014461          253 Q-APPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       253 ~-~~~~~p~ilV~NK~Dl~~  271 (424)
                      . ...+.|+++++||+|+..
T Consensus       223 ~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          223 NEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             CGGGTTSEEEEEEECHHHHH
T ss_pred             hhccCCCeEEEEEECchhhh
Confidence            2 224589999999999854

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.95  E-value=1.7e-09  Score=107.08  Aligned_cols=126  Identities=16%  Similarity=0.191  Sum_probs=67.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCccee---ecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCC-CChhh----h
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSG-YSHKD----V  209 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~---~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~-~~~~~----~  209 (424)
                      ++++++|++|+|||||+|.|+|..+..   ....++.++..........+  ..+.++|+||+...... .....    +
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            449999999999999999999875321   11123444433322232222  26899999998643110 00000    1


Q ss_pred             hhHHHHHHhhc----------cccc---EEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          210 KVRVESAWSAV----------NLFE---VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       210 ~~~~~~~~~~~----------~~aD---~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ...+...+...          .+++   +++|++|+..+++..+..+.+.|   .    .+.|+|+|+||+|....
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L---~----~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL---D----SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT---C----SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH---h----hCCCEEEEEcchhccch
Confidence            11122222211          1222   46677787666665554444433   3    24789999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.86  E-value=1.2e-08  Score=95.63  Aligned_cols=126  Identities=13%  Similarity=0.251  Sum_probs=68.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeec-------CCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCC-hhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYS-HKD  208 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~-------~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~-~~~  208 (424)
                      ++++++|++|+|||||+|.|+|......+       +.+.++.....+.+...   ...+.++|+||+........ ...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            68999999999999999999975432211       11222222222222221   13679999999865322111 111


Q ss_pred             hhhHHH----HHH-h----------hcccccEEEEEEeCC-CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          209 VKVRVE----SAW-S----------AVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       209 ~~~~~~----~~~-~----------~~~~aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      +.....    ..+ .          .+..+++.++++|.. .++...+..+...+.+       ..++++|+||+|....
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~-------~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-------VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-------TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-------cCcEEEEEeccccCCH
Confidence            111111    111 0          123458889999964 4555444444444433       1679999999998874

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.82  E-value=6.4e-09  Score=107.14  Aligned_cols=105  Identities=21%  Similarity=0.267  Sum_probs=61.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE-------ecCCccEEEEeCCCcccCCCCCChhh
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-------TKADTQICIFDTPGLMLNKSGYSHKD  208 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~-------~~~~~~i~l~DtpG~~~~~~~~~~~~  208 (424)
                      ..+..+|+|+|.||+|||||+|+|+|.....  +.+++|+..+.+.+       ...+..+.++||||+..........+
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~  112 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND  112 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH
Confidence            3456889999999999999999999987531  33444433333332       23567899999999986432111111


Q ss_pred             hhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461          209 VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (424)
Q Consensus       209 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~  248 (424)
                      . ..+  ++..+- ++  ++|+|+...++..+...+.++.
T Consensus       113 ~-~~f--ala~ll-ss--~lv~n~~~~i~~~dl~~l~~v~  146 (592)
T 1f5n_A          113 S-WIF--ALAVLL-SS--TFVYNSIGTINQQAMDQLYYVT  146 (592)
T ss_dssp             H-HHH--HHHHHH-CS--EEEEEEESCSSHHHHHTTHHHH
T ss_pred             H-HHH--HHHHHh-cC--eEEEECCCCccHHHHHHHHHHH
Confidence            1 111  111111 23  5667776666665554444433

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.76  E-value=3.6e-08  Score=93.91  Aligned_cols=137  Identities=18%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             HHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          154 SIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       154 tLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      +|+++++...+.. .....|.-+...... ..+..+.+|||  +..+..      +   .   ...+..+|++++|+|++
T Consensus        32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~-~~~~~~~iwD~--qer~~~------l---~---~~~~~~ad~vilV~D~~   95 (301)
T 1u0l_A           32 ERILCKLRGKFRL-QNLKIYVGDRVEYTP-DETGSGVIENV--LHRKNL------L---T---KPHVANVDQVILVVTVK   95 (301)
T ss_dssp             CEEEEEECGGGTT-TTCCCCTTCEEEEEC-CCSSSEEEEEE--CCCSCE------E---T---TTTEESCCEEEEEECSS
T ss_pred             cEEEEEEcccccc-cCCCCCCccEEEEEE-cCCCeEEEEEE--ccccce------e---e---ccccccCCEEEEEEeCC
Confidence            5677766655531 111112112222112 22347999999  332211      1   0   13578899999999998


Q ss_pred             CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHH
Q 014461          234 RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM  311 (424)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~  311 (424)
                      ++.. ....+..|+..+..   .+.|+++|+||+|+.+...  ...+..+.+...   ..++++||++|.|++++++.+.
T Consensus        96 ~~~~-s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~---~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A           96 MPET-STYIIDKFLVLAEK---NELETVMVINKMDLYDEDDLRKVRELEEIYSGL---YPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             TTCC-CHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT---SCEEECCTTTCTTHHHHHHHHS
T ss_pred             CCCC-CHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh---CcEEEEECCCCcCHHHHHHHhc
Confidence            6532 22344555554432   2589999999999976432  123333333322   3599999999999999999886


Q ss_pred             Hh
Q 014461          312 EQ  313 (424)
Q Consensus       312 ~~  313 (424)
                      ..
T Consensus       169 ge  170 (301)
T 1u0l_A          169 GK  170 (301)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.75  E-value=1e-08  Score=100.03  Aligned_cols=122  Identities=11%  Similarity=0.170  Sum_probs=73.3

Q ss_pred             EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC--------CCchHHHHHHHHHhcc
Q 014461          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMGK  252 (424)
Q Consensus       181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~--------~~~~~~~~~~l~~~~~  252 (424)
                      .+..++..+.+|||+|........            ...+..++++|||+|+++.-        .........++..+..
T Consensus       195 ~~~~~~~~l~i~Dt~Gq~~~r~~w------------~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~  262 (362)
T 1zcb_A          195 DFEIKNVPFKMVDVGGQRSERKRW------------FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN  262 (362)
T ss_dssp             EEEETTEEEEEEEECC-------C------------TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             EeeeCCeEEEEEeccchhhhhhhH------------HHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence            345567889999999986543211            23467889999999997521        1122344455555433


Q ss_pred             C-CCCCCcEEEEEecCCCCCCh-----------------hhHHHHHH----HHhcCC-----CCCeEEEEecCCCcChHH
Q 014461          253 Q-APPKQKRVLCMNKVDLVTKK-----------------KDLLKVAE----QFKHLP-----GYERIFMTSGLKGAGLKA  305 (424)
Q Consensus       253 ~-~~~~~p~ilV~NK~Dl~~~~-----------------~~~~~~~~----~~~~~~-----~~~~~~~iSA~~g~gi~~  305 (424)
                      . ...+.|+|+|+||+|+...+                 ....+...    .|....     ....++++||++|.||++
T Consensus       263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~  342 (362)
T 1zcb_A          263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL  342 (362)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence            2 22458999999999985211                 11122111    121211     112478999999999999


Q ss_pred             HHHHHHHhc
Q 014461          306 LTQYLMEQA  314 (424)
Q Consensus       306 L~~~i~~~l  314 (424)
                      +|+++.+.+
T Consensus       343 vF~~v~~~i  351 (362)
T 1zcb_A          343 VFRDVKDTI  351 (362)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.71  E-value=1.8e-08  Score=95.98  Aligned_cols=121  Identities=21%  Similarity=0.151  Sum_probs=74.4

Q ss_pred             CCCCcEEEEeCCCCccCC--------------------C-CCCCCCCCccC---hhhHHHHHHhcCCeEEEeec-ccccc
Q 014461           43 ENDCDSVFDSSYFRIPTI--------------------D-DPQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKGK   97 (424)
Q Consensus        43 ~~~~d~vie~~dar~p~~--------------------~-~~k~Dl~~~~~---~~~~~~~~~~~~~~i~f~~~-~~~~~   97 (424)
                      ...+|+++.+-|++.|.+                    . .||+||.+...   .+.|...+... ..++.+|+ ++.|.
T Consensus        82 ~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv  160 (301)
T 1u0l_A           82 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGI  160 (301)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTH
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCH
Confidence            446788888888776543                    2 45788876543   45677666554 66777888 77777


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCC-------
Q 014461           98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-------  170 (424)
Q Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-------  170 (424)
                      .++                 +.                ......++++|++|+|||||+|.|.|......+..       
T Consensus       161 ~~l-----------------f~----------------~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g  207 (301)
T 1u0l_A          161 EEL-----------------KE----------------YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRG  207 (301)
T ss_dssp             HHH-----------------HH----------------HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----------
T ss_pred             HHH-----------------HH----------------HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCC
Confidence            665                 11                11245689999999999999999998654322221       


Q ss_pred             CCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          171 TNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       171 ~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      ..+|+....  .... .--.++|+||+...
T Consensus       208 ~~~t~~~~~--~~~~-~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          208 RHTTTTAQL--LKFD-FGGYVVDTPGFANL  234 (301)
T ss_dssp             --CCCSCCE--EECT-TSCEEESSCSSTTC
T ss_pred             CCceeeeEE--EEcC-CCCEEEECcCCCcc
Confidence            123332211  1111 12378999998643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.63  E-value=5.8e-10  Score=111.33  Aligned_cols=239  Identities=15%  Similarity=0.114  Sum_probs=114.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHh-------CCcceeecCCCCcee--------------eEEEE---------------E
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV-------GTKVAAVSRKTNTTT--------------HEVLG---------------V  181 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~-------~~~~~~~~~~~~tt~--------------~~~~~---------------~  181 (424)
                      ++..|+++|.+|+||||++..|.       |.++..+...++...              +....               .
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            45788999999999999999987       555443333321110              00000               0


Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-E
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-R  260 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~  260 (424)
                      ....++.++++||||.....     ......+.. ...+..+|.+++|+|+..+ .. .   ...++.+...    .+ .
T Consensus       179 ~~~~~~D~VIIDTpG~l~~~-----~~l~~~L~~-~~~~~~p~~vllVvda~~g-~~-~---~~~~~~f~~~----l~i~  243 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHVD-----EAMMDEIKQ-VHASINPVETLFVVDAMTG-QD-A---ANTAKAFNEA----LPLT  243 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTTC-----HHHHHHHHH-HHHHSCCSEEEEEEETTBC-TT-H---HHHHHHHHHH----SCCC
T ss_pred             HHhCCCCEEEEECCCccccc-----HHHHHHHHH-HHHhhcCcceeEEeecchh-HH-H---HHHHHHHhcc----CCCe
Confidence            01246789999999975321     111111111 1223467899999999643 11 1   2223333211    22 3


Q ss_pred             EEEEecCCCCCChhhHHHHHHHHhcC-------CCCCeEE------EEecCCCcC-hHHHHHHHHHhccCCCCCCCCCCc
Q 014461          261 VLCMNKVDLVTKKKDLLKVAEQFKHL-------PGYERIF------MTSGLKGAG-LKALTQYLMEQAVQRPWSEDPLTM  326 (424)
Q Consensus       261 ilV~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~------~iSA~~g~g-i~~L~~~i~~~l~~~~~~~~~~~~  326 (424)
                      -+|+||+|..............+..-       .....+.      .+|+..|.| +..|++.+.+.+....        
T Consensus       244 gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~--------  315 (433)
T 2xxa_A          244 GVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQ--------  315 (433)
T ss_dssp             CEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHH--------
T ss_pred             EEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhh--------
Confidence            46899999864333333333333100       0001111      124445555 6666666554321100        


Q ss_pred             chhhH-HHHHH-HHHHHHHHhhcCc------------cCCcceEEEEEEEEe--ccCCeEEEEEEEE----eeCCCcccE
Q 014461          327 SEEVM-KNISL-EVVRERLLDHVHQ------------EIPYSIEHRLIDWKD--LRDGSLRIEQHLI----TNKLSQRKI  386 (424)
Q Consensus       327 ~~~~~-~~~~~-e~ire~l~~~l~~------------eip~~~~~~~~~~~~--~~~~~~~i~~~i~----~~~~s~k~i  386 (424)
                      .++.. +...- +..++.+++.+.+            ++|+.... ...+..  .++...++.+.|.    .||++++.|
T Consensus       316 ~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~-~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~  394 (433)
T 2xxa_A          316 AEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII  394 (433)
T ss_dssp             HHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC
T ss_pred             hHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchh-hhhhhccccHHHHHHHHHHHHcCCHHHhcCcccc
Confidence            00000 00001 1333344444433            78986432 123321  1111234555565    788888877


Q ss_pred             EeccCCchHHHHHHHHHH
Q 014461          387 LVGKNGSKIGRIGVEANE  404 (424)
Q Consensus       387 vig~~g~~i~~i~~~~~~  404 (424)
                          +|+++++|+..++.
T Consensus       395 ----~~sr~~ria~gsg~  408 (433)
T 2xxa_A          395 ----KGSRKRRIAAGSGM  408 (433)
T ss_dssp             ----CHHHHHHHHHHHTC
T ss_pred             ----CHHHHHHHHccCCC
Confidence                79999999998873

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.62  E-value=4.2e-08  Score=95.31  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC--------CCCCchHHHHHHHHHhccC-CCC
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR--------HLTSPDSRVIRLIERMGKQ-APP  256 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~--------~~~~~~~~~~~~l~~~~~~-~~~  256 (424)
                      ...+.+|||+|...+...            ....++.++++|+|+|.+.        ........+..++..+... ...
T Consensus       182 ~v~l~iwDtaGQe~~r~~------------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~  249 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRK------------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  249 (354)
T ss_dssp             --EEEEEEECCSTTGGGG------------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS
T ss_pred             ceeeEEEECCCchhhhHH------------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC
Confidence            467899999998754321            1235678999999999861        1122233455566554432 124


Q ss_pred             CCcEEEEEecCCCCCChh---------------------hHHHHHHHH-hc----C----------CCCCeEEEEecCCC
Q 014461          257 KQKRVLCMNKVDLVTKKK---------------------DLLKVAEQF-KH----L----------PGYERIFMTSGLKG  300 (424)
Q Consensus       257 ~~p~ilV~NK~Dl~~~~~---------------------~~~~~~~~~-~~----~----------~~~~~~~~iSA~~g  300 (424)
                      +.|+++|+||+|+...+.                     ...+....+ ..    .          .....++++||++|
T Consensus       250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~  329 (354)
T 2xtz_A          250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ  329 (354)
T ss_dssp             SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred             CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence            589999999999843110                     001112222 11    0          11123689999999


Q ss_pred             cChHHHHHHHHHhc
Q 014461          301 AGLKALTQYLMEQA  314 (424)
Q Consensus       301 ~gi~~L~~~i~~~l  314 (424)
                      .||+++|+++.+.+
T Consensus       330 ~nV~~vF~~v~~~I  343 (354)
T 2xtz_A          330 KLVKKTFKLVDETL  343 (354)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999988765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.62  E-value=3.1e-07  Score=91.24  Aligned_cols=148  Identities=20%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCce-------------eeEEEEE----------------E
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-------------THEVLGV----------------M  182 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt-------------~~~~~~~----------------~  182 (424)
                      ++..|+++|.+|+||||++..|.      |.++..+...+...             .......                .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999987      44443333221100             0000000                0


Q ss_pred             ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (424)
Q Consensus       183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il  262 (424)
                      ...++.++++||||.....     ......+... .....+|.+++|+|+..+  ......   ...+...   -.+..+
T Consensus       179 ~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i-~~~~~pd~vlLVvDA~~g--q~a~~~---a~~f~~~---~~i~gV  244 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKED-----KALIEEMKQI-SNVIHPHEVILVIDGTIG--QQAYNQ---ALAFKEA---TPIGSI  244 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCC-----HHHHHHHHHH-HHHHCCSEEEEEEEGGGG--GGHHHH---HHHHHHS---CTTEEE
T ss_pred             HhCCCCEEEEECCCcccch-----HHHHHHHHHH-HHhhcCceEEEEEeCCCc--hhHHHH---HHHHHhh---CCCeEE
Confidence            1135789999999975321     1111222222 223357999999999642  112222   2333211   134678


Q ss_pred             EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                      |+||+|..........    +....+.+ +..++.  |+++++|
T Consensus       245 IlTKlD~~~~gG~~ls----~~~~~g~P-I~fig~--Ge~vddL  281 (443)
T 3dm5_A          245 IVTKLDGSAKGGGALS----AVAATGAP-IKFIGT--GEKIDDI  281 (443)
T ss_dssp             EEECCSSCSSHHHHHH----HHHTTCCC-EEEEEC--SSSTTCE
T ss_pred             EEECCCCcccccHHHH----HHHHHCCC-EEEEEc--CCChHHh
Confidence            9999998764333222    22234554 666764  8877664

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.57  E-value=1.2e-07  Score=93.28  Aligned_cols=121  Identities=15%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC--------CCCchHHHHHHHHHhccC
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--------LTSPDSRVIRLIERMGKQ  253 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~--------~~~~~~~~~~~l~~~~~~  253 (424)
                      +..++..+.+|||+|...+...            ....++.++++|+|+|+++-        .......+..|+..+...
T Consensus       212 ~~~~~v~l~iwDtaGQe~~r~~------------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          212 FQVDKVNFHMFDVGGQRDERRK------------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             EEETTEEEEEEEECCSGGGGGG------------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eecCCccceecccchhhhhhhh------------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            4556788999999998754321            12356789999999999751        012233556667665443


Q ss_pred             -CCCCCcEEEEEecCCCCCChh---h---------------------------HHHHHHHH-----hcC-----CC--CC
Q 014461          254 -APPKQKRVLCMNKVDLVTKKK---D---------------------------LLKVAEQF-----KHL-----PG--YE  290 (424)
Q Consensus       254 -~~~~~p~ilV~NK~Dl~~~~~---~---------------------------~~~~~~~~-----~~~-----~~--~~  290 (424)
                       ...+.|+++|+||+|+...+.   .                           ..+....|     ...     .+  ..
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence             234689999999999843211   0                           01112222     111     01  12


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhc
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .++++||+++.||+++|+++.+.+
T Consensus       360 ~~~~TSA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          360 YPHFTCAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCcCHHHHHHHHHHHH
Confidence            367899999999999999987765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.54  E-value=3.3e-07  Score=86.27  Aligned_cols=94  Identities=16%  Similarity=0.274  Sum_probs=69.2

Q ss_pred             hHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461          211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       211 ~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (424)
                      ...+..+..+..+|++++|+|+..+.+.....+.+++        .++|.++|+||+|+.+. .....+.+.+.. .++ 
T Consensus        12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~-~~~~~~~~~~~~-~g~-   80 (282)
T 1puj_A           12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA-AVTQQWKEHFEN-QGI-   80 (282)
T ss_dssp             HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH-HHHHHHHHHHHT-TTC-
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH-HHHHHHHHHHHh-cCC-
Confidence            3466777889999999999999877665544444443        14789999999999873 334444444433 344 


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhcc
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +++++||++|.|+++|++.+.+.+.
T Consensus        81 ~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           81 RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cEEEEECCCcccHHHHHHHHHHHHH
Confidence            4899999999999999998877653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.43  E-value=3.7e-07  Score=86.83  Aligned_cols=89  Identities=19%  Similarity=0.311  Sum_probs=60.7

Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-h-HHHHHHHHhcCCCCCeEEEEe
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-D-LLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      .+.++|++++|+|++++... ...+..|+..+..   .+.|+++|+||+|+.+... . ..+..+.+.. .++ +++++|
T Consensus        76 ~~~naD~vliV~d~~~p~~s-~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-~g~-~~~~~S  149 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFN-NYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRD-AGY-DVLKVS  149 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCC-HHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-TTC-EEEECC
T ss_pred             HHHhcCEEEEEEECCCCCCC-HHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-CCC-eEEEEE
Confidence            57889999999999864322 2334455544332   2488999999999986421 1 2333333333 355 599999


Q ss_pred             cCCCcChHHHHHHHHHh
Q 014461          297 GLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~  313 (424)
                      |++|.|+++|++.+...
T Consensus       150 A~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          150 AKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             TTTCTTHHHHHHHTTTC
T ss_pred             CCCCCCHHHHHhhccCc
Confidence            99999999999987654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.38  E-value=1.2e-06  Score=86.88  Aligned_cols=148  Identities=16%  Similarity=0.205  Sum_probs=78.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHh------CCcceeecCCC----------------CceeeEEE-----------E--EE
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKT----------------NTTTHEVL-----------G--VM  182 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~----------------~tt~~~~~-----------~--~~  182 (424)
                      ++..|+++|++|+||||++..|.      |.++..+....                +.......           .  ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46788999999999999999987      33332222110                10000000           0  00


Q ss_pred             ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (424)
Q Consensus       183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il  262 (424)
                      ...++.++++||||......  . ......+......+ ..|.+++|+|+..+  .......+.+.+..      .+..+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~--d-~~lm~el~~i~~~~-~pd~vlLVlDa~~g--q~a~~~a~~f~~~~------~~~gV  243 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGE--E-TKLLEEMKEMYDVL-KPDDVILVIDASIG--QKAYDLASRFHQAS------PIGSV  243 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCC--T-THHHHHHHHHHHHH-CCSEEEEEEEGGGG--GGGHHHHHHHHHHC------SSEEE
T ss_pred             HhcCCCEEEEECCCCccccC--C-HHHHHHHHHHHHhh-CCcceEEEEeCccc--hHHHHHHHHHhccc------CCcEE
Confidence            12367899999999653100  0 11112222222222 46899999999643  22223333333221      34788


Q ss_pred             EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChH
Q 014461          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK  304 (424)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~  304 (424)
                      |+||+|....-.........    .+. ++..++.  |++++
T Consensus       244 IlTKlD~~a~~G~als~~~~----~g~-Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          244 IITKMDGTAKGGGALSAVVA----TGA-TIKFIGT--GEKID  278 (433)
T ss_dssp             EEECGGGCSCHHHHHHHHHH----HTC-EEEEEEC--CSSSS
T ss_pred             EEecccccccchHHHHHHHH----HCC-CEEEEEC--CCChH
Confidence            99999987543333333332    233 3666765  66654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.33  E-value=9.2e-07  Score=86.50  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=63.0

Q ss_pred             HHHHHhhc-ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHHHHHHhcCCC
Q 014461          213 VESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLPG  288 (424)
Q Consensus       213 ~~~~~~~~-~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~~  288 (424)
                      +...+..+ ..++++++|+|+++........+    .+..    .+.|+++|+||+|+....   ....+....+....+
T Consensus        61 f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l----~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g  132 (369)
T 3ec1_A           61 FLSMLHRIGESKALVVNIVDIFDFNGSFIPGL----PRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG  132 (369)
T ss_dssp             HHHHHHHHHHHCCEEEEEEETTCSGGGCCSSH----HHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhccCcEEEEEEECCCCCCchhhHH----HHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC
Confidence            34444444 66789999999976432221122    2221    147899999999998642   223344444444455


Q ss_pred             C--CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          289 Y--ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       289 ~--~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .  ..++.+||++|.|+++|++.|.+...
T Consensus       133 ~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          133 LCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             CCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5  36899999999999999999987653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.23  E-value=4.4e-06  Score=74.06  Aligned_cols=97  Identities=11%  Similarity=0.048  Sum_probs=58.7

Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC--CCCCcEEEEEecC-CCCCChhhHHHHHHHHh--cCCCCCeEE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKV-DLVTKKKDLLKVAEQFK--HLPGYERIF  293 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~-Dl~~~~~~~~~~~~~~~--~~~~~~~~~  293 (424)
                      ++..+|++|||+|+++........-+..+..+....  ..+.|++|+.||. |+... -...++.+.+.  .....-.+.
T Consensus       122 Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-ms~~EI~e~L~L~~l~R~W~Iq  200 (227)
T 3l82_B          122 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-MPCFYLAHELHLNLLNHPWLVQ  200 (227)
T ss_dssp             HHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-CCHHHHHHHTTGGGGCSCEEEE
T ss_pred             HhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-CCHHHHHHHcCCcCCCCCEEEE
Confidence            456789999999998653222111111122222111  2458999999996 67543 12223333321  111222589


Q ss_pred             EEecCCCcChHHHHHHHHHhccC
Q 014461          294 MTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +|||++|+|+.+-++||.+.+..
T Consensus       201 ~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          201 DTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             EEETTTCTTHHHHHHHHTTTTTT
T ss_pred             EeECCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999999987743

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.21  E-value=9.3e-07  Score=88.11  Aligned_cols=63  Identities=24%  Similarity=0.402  Sum_probs=44.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC---------------cceeecCCCCceeeEEEEEEecC-----------CccEE
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT---------------KVAAVSRKTNTTTHEVLGVMTKA-----------DTQIC  190 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~---------------~~~~~~~~~~tt~~~~~~~~~~~-----------~~~i~  190 (424)
                      .+...|+|+|.+++|||||+|.|+|.               +....+.. ++|+..+.+++.+.           +.+++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv  143 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceEE
Confidence            46788999999999999999999864               22223322 25555556665442           35699


Q ss_pred             EEeCCCcccC
Q 014461          191 IFDTPGLMLN  200 (424)
Q Consensus       191 l~DtpG~~~~  200 (424)
                      ++||||+..+
T Consensus       144 llDTeG~~~~  153 (447)
T 3q5d_A          144 LMDTQGTFDS  153 (447)
T ss_dssp             EEEEECCCSS
T ss_pred             EEcCCccccc
Confidence            9999999765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.20  E-value=2.7e-06  Score=83.07  Aligned_cols=94  Identities=18%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             HHHHHhhc-ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCC
Q 014461          213 VESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPG  288 (424)
Q Consensus       213 ~~~~~~~~-~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~  288 (424)
                      +...+..+ +.+|++++|+|+++.    ...+...+.++.    .+.|+++|+||+|+.....   ...+....+....+
T Consensus        59 f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g  130 (368)
T 3h2y_A           59 FLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG  130 (368)
T ss_dssp             HHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence            33444333 456799999999652    223333344432    1478999999999976431   23333333333345


Q ss_pred             C--CeEEEEecCCCcChHHHHHHHHHhc
Q 014461          289 Y--ERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       289 ~--~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +  ..++.+||++|.|+++|++.|.+..
T Consensus       131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          131 LKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             CCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            5  2699999999999999999997754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.20  E-value=9.3e-06  Score=76.87  Aligned_cols=148  Identities=16%  Similarity=0.155  Sum_probs=78.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCce--------------eeEEEE------------E---Ee
Q 014461          139 SVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT--------------THEVLG------------V---MT  183 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt--------------~~~~~~------------~---~~  183 (424)
                      +..++++|.+|+||||++..|.      +.++..+...+...              ......            .   ..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999987      33333222221100              000000            0   01


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVL  262 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~il  262 (424)
                      ..++.++++||||.....  . .......+.. +..+..+|.+++|+|+..+  .   .....++.+..    ..| ..+
T Consensus       178 ~~~~D~ViIDTpg~~~~~--~-~~~l~~el~~-i~~~~~~d~vllVvda~~g--~---~~~~~~~~~~~----~~~i~gv  244 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYG--E-EAALLEEMKN-IYEAIKPDEVTLVIDASIG--Q---KAYDLASKFNQ----ASKIGTI  244 (297)
T ss_dssp             HTTCSEEEEECCCSCCTT--C-HHHHHHHHHH-HHHHHCCSEEEEEEEGGGG--G---GHHHHHHHHHH----TCTTEEE
T ss_pred             hCCCCEEEEeCCCCcccc--c-HHHHHHHHHH-HHHHhcCCEEEEEeeCCch--H---HHHHHHHHHHh----hCCCCEE
Confidence            156789999999986410  0 0111111111 1223357999999998632  1   12223333322    134 678


Q ss_pred             EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                      |+||+|........    ..+....+.+ +..++  +|++++++
T Consensus       245 Vlnk~D~~~~~g~~----~~~~~~~~~p-i~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          245 IITKMDGTAKGGGA----LSAVAATGAT-IKFIG--TGEKIDEL  281 (297)
T ss_dssp             EEECGGGCTTHHHH----HHHHHTTTCC-EEEEE--CSSSTTCE
T ss_pred             EEeCCCCCcchHHH----HHHHHHHCcC-EEEEe--CCCChhhc
Confidence            99999986532222    2233444554 66665  67777653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.15  E-value=2.6e-05  Score=81.14  Aligned_cols=81  Identities=12%  Similarity=0.268  Sum_probs=42.4

Q ss_pred             CccEEEEeCCCcccC-CCCCChhhhhhHHHHHHhh-cc-cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461          186 DTQICIFDTPGLMLN-KSGYSHKDVKVRVESAWSA-VN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~-~~~~~~~~~~~~~~~~~~~-~~-~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il  262 (424)
                      ...+.++|.||+... ..++... ....+...... +. ...+++++++++....  ......++..+...   +.+.|+
T Consensus       146 ~p~LlLlDePGi~~~~t~~LD~~-~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~~---g~rtI~  219 (608)
T 3szr_A          146 VPDLTLIDLPGITRVAVGNQPAD-IGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDPE---GDRTIG  219 (608)
T ss_dssp             SCCEEEEECCC------CCSSCS-HHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCSS---CCSEEE
T ss_pred             CCceeEeeCCCccccccCCCCHH-HHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhhc---CCceEE
Confidence            356999999997653 1222221 12223333332 22 3356667776643322  22345556665432   357999


Q ss_pred             EEecCCCCCC
Q 014461          263 CMNKVDLVTK  272 (424)
Q Consensus       263 V~NK~Dl~~~  272 (424)
                      |+||.|+...
T Consensus       220 VlTK~Dlv~~  229 (608)
T 3szr_A          220 ILTKPDLVDK  229 (608)
T ss_dssp             EEECGGGSSS
T ss_pred             EecchhhcCc
Confidence            9999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.12  E-value=1.4e-06  Score=81.01  Aligned_cols=87  Identities=18%  Similarity=0.247  Sum_probs=62.2

Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                      .+..+..+..+|++++|+|+..+.......+. ++         ++|.++|+||+|+.+. .......+.+.. .+.. +
T Consensus        12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~-~~~~~~~~~~~~-~g~~-v   78 (262)
T 3cnl_A           12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADE-KTTKKWVEFFKK-QGKR-V   78 (262)
T ss_dssp             THHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCH-HHHHHHHHHHHH-TTCC-E
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCH-HHHHHHHHHHHH-cCCe-E
Confidence            45566778899999999999876554332221 21         4789999999999873 334444455543 2454 6


Q ss_pred             EEEecCCCcChHHHHHHHHHh
Q 014461          293 FMTSGLKGAGLKALTQYLMEQ  313 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~  313 (424)
                       ++||++|.|+++|++.+.+.
T Consensus        79 -~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           79 -ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             -EECCTTSCHHHHHHHHCCCT
T ss_pred             -EEECCCCcCHHHHHHHHHHh
Confidence             99999999999999888664

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.88  E-value=6.2e-05  Score=72.16  Aligned_cols=149  Identities=14%  Similarity=0.202  Sum_probs=77.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC------cceeecCCCCc-----------eeeEEEEEE-----------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKTNT-----------TTHEVLGVM-----------------  182 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~------~~~~~~~~~~t-----------t~~~~~~~~-----------------  182 (424)
                      .++..++++|++||||||+++.|.+.      ++...+.....           .+.....+.                 
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            45778999999999999999998852      22111111000           000000000                 


Q ss_pred             -ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 014461          183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (424)
Q Consensus       183 -~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (424)
                       ...+..+.++||+|.......+    . ..+... ...-..|-.++++|+..+     ..+.+.++.+....   ....
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l----~-~eL~~i-~ral~~de~llvLDa~t~-----~~~~~~~~~~~~~~---~it~  272 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNL----M-DEMKKI-ARVTKPNLVIFVGDALAG-----NAIVEQARQFNEAV---KIDG  272 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCH----H-HHHHHH-HHHHCCSEEEEEEEGGGT-----THHHHHHHHHHHHS---CCCE
T ss_pred             HHhccchhhHHhhccchhHHHHH----H-HHHHHH-HHHhcCCCCEEEEecHHH-----HHHHHHHHHHHHhc---CCCE
Confidence             0124567899999985432211    1 111111 112236889999998643     12333333332111   1247


Q ss_pred             EEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       262 lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                      +++||.|....-..........    +.+ +..++  +|++++++
T Consensus       273 iilTKlD~~a~~G~~l~~~~~~----~~p-i~~i~--~Ge~v~dl  310 (328)
T 3e70_C          273 IILTKLDADARGGAALSISYVI----DAP-ILFVG--VGQGYDDL  310 (328)
T ss_dssp             EEEECGGGCSCCHHHHHHHHHH----TCC-EEEEE--CSSSTTCE
T ss_pred             EEEeCcCCccchhHHHHHHHHH----CCC-EEEEe--CCCCcccc
Confidence            8899999754333333333333    333 66676  77777553

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.83  E-value=2.6e-05  Score=72.55  Aligned_cols=95  Identities=8%  Similarity=0.022  Sum_probs=58.5

Q ss_pred             hcccccEEEEEEeCCCCCCCchH-HHH---HHHHHhccCCCCCCcEEEEEec-CCCCCChhhHHHHHHHHh--cCCCCCe
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDS-RVI---RLIERMGKQAPPKQKRVLCMNK-VDLVTKKKDLLKVAEQFK--HLPGYER  291 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~-~~~---~~l~~~~~~~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~~--~~~~~~~  291 (424)
                      ++..+|++|||+|+++....... ++.   .++.+-.  ...+.|++|..|| .|+... -...++.+.+.  .....-.
T Consensus       207 Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~--~l~~apLLVfANKkQDlp~A-ms~~EI~e~L~L~~l~r~W~  283 (312)
T 3l2o_B          207 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF--GSSGRPLLVLSCISQGDVKR-MPCFYLAHELHLNLLNHPWL  283 (312)
T ss_dssp             HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHH--HCTTCCEEEEEEESSTTSCB-CCHHHHHHHTTGGGGCSCEE
T ss_pred             HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchh--hcCCCeEEEEeCCcccccCC-CCHHHHHHHcCCccCCCcEE
Confidence            45678999999999865432211 111   2222110  0125789999997 588653 12223333321  1112225


Q ss_pred             EEEEecCCCcChHHHHHHHHHhccC
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      +.+|||.+|+|+.+-++||.+.+..
T Consensus       284 Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          284 VQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             EEecccCCCcCHHHHHHHHHHHHHh
Confidence            8999999999999999999998753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.82  E-value=9.7e-05  Score=70.04  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..++++|++|||||||++.|.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            466899999999999999999874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.76  E-value=0.00013  Score=73.22  Aligned_cols=153  Identities=18%  Similarity=0.246  Sum_probs=76.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-----------eeEEEEEE-----------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-----------THEVLGVM-----------------  182 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-----------~~~~~~~~-----------------  182 (424)
                      .++..++|+|.+|+|||||++.|.+      +++..........           +..+..+.                 
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            3566899999999999999999875      2222211111100           00000000                 


Q ss_pred             -ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc
Q 014461          183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK  259 (424)
Q Consensus       183 -~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p  259 (424)
                       ...+..++++||+|.......+. ..+.. +......+  ...+-+++|+|++.+   .  .....++.+....   ..
T Consensus       371 a~~~~~DvVLIDTaGrl~~~~~lm-~EL~k-iv~iar~l~~~~P~evLLvLDattG---q--~al~~ak~f~~~~---~i  440 (503)
T 2yhs_A          371 AKARNIDVLIADTAGRLQNKSHLM-EELKK-IVRVMKKLDVEAPHEVMLTIDASTG---Q--NAVSQAKLFHEAV---GL  440 (503)
T ss_dssp             HHHTTCSEEEECCCCSCCCHHHHH-HHHHH-HHHHHHTTCTTCSSEEEEEEEGGGT---H--HHHHHHHHHHHHT---CC
T ss_pred             HHhcCCCEEEEeCCCccchhhhHH-HHHHH-HHHHHHHhccCCCCeeEEEecCccc---H--HHHHHHHHHHhhc---CC
Confidence             01356789999999753321000 01111 11111111  235678999998642   1  1222333332111   12


Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          260 RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       260 ~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                      ..+|+||+|-...-.........+    +.+ +.++  -+|+++++|
T Consensus       441 tgvIlTKLD~takgG~~lsi~~~~----~~P-I~fi--g~Ge~vdDL  480 (503)
T 2yhs_A          441 TGITLTKLDGTAKGGVIFSVADQF----GIP-IRYI--GVGERIEDL  480 (503)
T ss_dssp             SEEEEECGGGCSCCTHHHHHHHHH----CCC-EEEE--ECSSSGGGE
T ss_pred             CEEEEEcCCCcccccHHHHHHHHH----CCC-EEEE--ecCCChhhc
Confidence            467899999754434444444433    333 5444  467777653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.60  E-value=3.2e-05  Score=73.33  Aligned_cols=86  Identities=17%  Similarity=0.388  Sum_probs=58.8

Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCCCCeEEEE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      .+..+|.+++|+|+..+..... .+.+++.....   .++|.++|+||+|+.+...   ....+.+.+... ++ +++.+
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~-~v~~~  156 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GY-DVYLT  156 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TC-CEEEC
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CC-eEEEE
Confidence            4678899999999975544443 45555543221   1478899999999987632   134444555332 45 48999


Q ss_pred             ecCCCcChHHHHHHH
Q 014461          296 SGLKGAGLKALTQYL  310 (424)
Q Consensus       296 SA~~g~gi~~L~~~i  310 (424)
                      ||.+|.|+++|++.+
T Consensus       157 sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          157 SSKDQDSLADIIPHF  171 (307)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCCCCCHHHHHhhc
Confidence            999999999877644

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.44  E-value=0.00028  Score=66.88  Aligned_cols=24  Identities=13%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+..++++|++|+||||++..|.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            456789999999999999998874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.39  E-value=0.0017  Score=61.83  Aligned_cols=25  Identities=16%  Similarity=0.319  Sum_probs=21.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..++++|.+|+||||++..|.+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999998864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.33  E-value=0.00056  Score=64.50  Aligned_cols=119  Identities=13%  Similarity=0.183  Sum_probs=62.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC-------CcceeecCCCCc-e---------------eeEEE-------EEEecCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG-------TKVAAVSRKTNT-T---------------THEVL-------GVMTKADT  187 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~-------~~~~~~~~~~~t-t---------------~~~~~-------~~~~~~~~  187 (424)
                      ++..++++|++|+||||++..|.+       .++..+...+.. +               .....       ......+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            466899999999999999998863       122222111110 0               00000       00012456


Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      +++++||||.....     .   ..+......+  ...|.+++|+|++..    ...+.++...+...    ...-+|+|
T Consensus       184 dlvIiDT~G~~~~~-----~---~~~~el~~~l~~~~~~~~~lVl~at~~----~~~~~~~~~~~~~l----~~~giVlt  247 (296)
T 2px0_A          184 DHVFVDTAGRNFKD-----P---QYIDELKETIPFESSIQSFLVLSATAK----YEDMKHIVKRFSSV----PVNQYIFT  247 (296)
T ss_dssp             SEEEEECCCCCTTS-----H---HHHHHHHHHSCCCTTEEEEEEEETTBC----HHHHHHHTTTTSSS----CCCEEEEE
T ss_pred             CEEEEeCCCCChhh-----H---HHHHHHHHHHhhcCCCeEEEEEECCCC----HHHHHHHHHHHhcC----CCCEEEEe
Confidence            89999999976321     1   1111111122  235778999998632    22333333333311    12346779


Q ss_pred             cCCCCCC
Q 014461          266 KVDLVTK  272 (424)
Q Consensus       266 K~Dl~~~  272 (424)
                      |+|....
T Consensus       248 k~D~~~~  254 (296)
T 2px0_A          248 KIDETTS  254 (296)
T ss_dssp             CTTTCSC
T ss_pred             CCCcccc
Confidence            9998654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.25  E-value=0.0018  Score=62.63  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++-.++++|++||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            466889999999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.25  E-value=0.00027  Score=62.38  Aligned_cols=114  Identities=13%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             EEEEE-ecCCCChhHHHHhHh------CCcceeecCCCCceeeE-------EEEEEe-------------cCCccEEEEe
Q 014461          141 AVGII-GAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE-------VLGVMT-------------KADTQICIFD  193 (424)
Q Consensus       141 ~v~vv-G~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~-------~~~~~~-------------~~~~~i~l~D  193 (424)
                      .|+|. +..|+||||+.-.|.      |.++..+.-.++.+...       ....+.             ...+.++++|
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD   82 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD   82 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence            35566 578899999988765      33433333222211000       000111             1357899999


Q ss_pred             CCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       194 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                      ||+....              .....+..+|.+++++..+... .....+.+.+++.... .++.++.+|+|++|..
T Consensus        83 ~~~~~~~--------------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           83 GAGSLSV--------------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAY-SRKVEARFLITRKIEM  143 (206)
T ss_dssp             CCSSSSH--------------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCG-GGCCEEEEEECSBCTT
T ss_pred             CCCCCCH--------------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHh-CCCCcEEEEEeccCCC
Confidence            9986521              1122345579999999986433 3333455666655422 2335678999999954

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.12  E-value=0.0016  Score=62.90  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=54.5

Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEEEe
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      .+..+|.+++|... .+ ......+..+|......   ++|.++|+||+|+.+...  ....+...|.. .++. ++.+|
T Consensus       127 i~anvD~v~iv~a~-~P-~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G~~-v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LP-ELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IGYR-VLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEES-TT-TCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TTCC-EEECB
T ss_pred             HHhcCCEEEEEEeC-CC-CCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHh-CCCc-EEEEe
Confidence            35778999977544 33 22233444444321111   367899999999987422  13344555543 4665 89999


Q ss_pred             cCCCcChHHHHHHH
Q 014461          297 GLKGAGLKALTQYL  310 (424)
Q Consensus       297 A~~g~gi~~L~~~i  310 (424)
                      |.+|.|+++|...+
T Consensus       200 a~~~~gl~~L~~~~  213 (358)
T 2rcn_A          200 SHTQDGLKPLEEAL  213 (358)
T ss_dssp             TTTTBTHHHHHHHH
T ss_pred             cCCCcCHHHHHHhc
Confidence            99999999988765

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.05  E-value=0.0027  Score=59.95  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++-.++++|++||||||+++.|.+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3466889999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.04  E-value=0.003  Score=62.46  Aligned_cols=24  Identities=13%  Similarity=0.130  Sum_probs=20.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..++++|.+|+||||++..|.+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998873

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.94  E-value=8.9e-05  Score=65.58  Aligned_cols=58  Identities=21%  Similarity=0.182  Sum_probs=36.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc-eeecCCCCceeeEEEEEEecCCccEEEEeCCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKTNTTTHEVLGVMTKADTQICIFDTPG  196 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG  196 (424)
                      .++..++++|++|||||||++.|.+... ......+.||+....+.  .++..+.++|...
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~   75 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE   75 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence            4566789999999999999999986432 12344455665543221  2344455555544

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.87  E-value=0.0083  Score=56.38  Aligned_cols=24  Identities=13%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..++++|.+|+||||++..|.+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998874

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.61  E-value=0.0043  Score=61.51  Aligned_cols=24  Identities=38%  Similarity=0.648  Sum_probs=20.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      .+...|+|+|..++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            356778999999999999999664

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.38  E-value=0.0014  Score=56.94  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=20.2

Q ss_pred             EEEEEecCCCChhHHHHhHhCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~  162 (424)
                      +++++|++|+|||||++.+.|.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.31  E-value=0.0013  Score=58.09  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      +..++++|++|+|||||++.|.+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            456899999999999999999863

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.30  E-value=0.0042  Score=55.17  Aligned_cols=110  Identities=11%  Similarity=0.102  Sum_probs=60.2

Q ss_pred             EEEE-ecCCCChhHHHHhHh------CCcceeecCCCCceeeEEE-------EEEe-------cCCccEEEEeCCCc-cc
Q 014461          142 VGII-GAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHEVL-------GVMT-------KADTQICIFDTPGL-ML  199 (424)
Q Consensus       142 v~vv-G~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~~~-------~~~~-------~~~~~i~l~DtpG~-~~  199 (424)
                      |+|. +..|+||||+.-.|.      | ++..+.-.++.+.....       ..+.       ...+.++++|||+. ..
T Consensus         3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~   81 (209)
T 3cwq_A            3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPED   81 (209)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSS
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCc
Confidence            5554 678999999988775      3 44333322221100000       0010       23567999999986 42


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      .       .    .   ...+..+|.+++++..+...-.....+.+.++...     +.++.+|+|++|...
T Consensus        82 ~-------~----~---~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~-----~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           82 E-------D----L---EALADGCDLLVIPSTPDALALDALMLTIETLQKLG-----NNRFRILLTIIPPYP  134 (209)
T ss_dssp             S-------H----H---HHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTC-----SSSEEEEECSBCCTT
T ss_pred             H-------H----H---HHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhcc-----CCCEEEEEEecCCcc
Confidence            2       1    1   12345679999999874211111123334444432     245889999999754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.29  E-value=0.0017  Score=56.16  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+..++++|++|||||||++.|.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3457899999999999999999863

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.18  E-value=0.0044  Score=57.06  Aligned_cols=67  Identities=6%  Similarity=0.006  Sum_probs=39.4

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      .+.++++|||+....              .+...+..+|.+++++..+.........+.+.++..+    .+.++.+|+|
T Consensus       144 ~yD~viiD~pp~~~~--------------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~----~~~~~~vv~N  205 (267)
T 3k9g_A          144 KYDYIVIDTNPSLDV--------------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLN----LFLPIFLIIT  205 (267)
T ss_dssp             TCSEEEEEECSSCSH--------------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTT----CCCCEEEEEE
T ss_pred             CCCEEEEECcCCccH--------------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHh----ccCCEEEEEe
Confidence            467899999985421              1123345589999999985311111123344444442    2356789999


Q ss_pred             cCCCC
Q 014461          266 KVDLV  270 (424)
Q Consensus       266 K~Dl~  270 (424)
                      +++..
T Consensus       206 ~~~~~  210 (267)
T 3k9g_A          206 RFKKN  210 (267)
T ss_dssp             EECTT
T ss_pred             cccCc
Confidence            99543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.15  E-value=0.0031  Score=54.69  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ++..++++|++|+|||||++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4567999999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.11  E-value=0.0025  Score=56.50  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=23.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++..|+|+|++|+|||||++.|.+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            346788999999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.11  E-value=0.0025  Score=56.03  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+..++++|++|||||||++.|.+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3557899999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.08  E-value=0.0025  Score=56.44  Aligned_cols=26  Identities=19%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++-.++++|++|||||||++.|.|.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34567899999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.01  E-value=0.0028  Score=56.89  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+++..++++|++|||||||++.|.+.
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            345677899999999999999999874

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.99  E-value=0.0036  Score=56.78  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            456679999999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.97  E-value=0.0025  Score=57.12  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++..++++|++|+|||||++.|.+.
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34667899999999999999999873

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.95  E-value=0.0038  Score=56.18  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=23.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345678999999999999999998853

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.87  E-value=0.0042  Score=55.09  Aligned_cols=26  Identities=12%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ++..++++|++|||||||++.|.+..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            45678999999999999999998653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.84  E-value=0.0046  Score=52.97  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++-.++++|++|+|||||++.+.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc
Confidence            456789999999999999998664

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.84  E-value=0.0041  Score=54.95  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=22.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ++..|+++|++|+|||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.80  E-value=0.0049  Score=56.00  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456679999999999999999998853

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.78  E-value=0.0053  Score=55.97  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456689999999999999999999853

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.76  E-value=0.0051  Score=56.77  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456678999999999999999998853

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.74  E-value=0.005  Score=52.22  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|+.|+|||||++.|.+.-
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            456679999999999999999998743

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.72  E-value=0.0051  Score=56.61  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356679999999999999999998853

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.72  E-value=0.0036  Score=54.67  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=24.8

Q ss_pred             EEEEecCCCChhHHHHhHhCCcc-eeecCCCCceeeE
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKV-AAVSRKTNTTTHE  177 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~-~~~~~~~~tt~~~  177 (424)
                      |+|+|++|||||||++.|+.... ......+.||+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p   40 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP   40 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence            78999999999999999975321 1123345566543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.72  E-value=0.005  Score=57.27  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|-.
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            456678999999999999999998843

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.71  E-value=0.0051  Score=56.90  Aligned_cols=27  Identities=33%  Similarity=0.534  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            456679999999999999999999853

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.71  E-value=0.0051  Score=55.98  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCc
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      -.++++|++|+|||||++.+.|-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999853

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=95.71  E-value=0.0073  Score=56.53  Aligned_cols=72  Identities=17%  Similarity=0.137  Sum_probs=39.8

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEE
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCM  264 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i-lV~  264 (424)
                      .+.++++|||+....           ...   ..+..+|.+++++..+.........+.+.+........++.+++ +|+
T Consensus       154 ~yD~IiiD~pp~~~~-----------~~~---~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~  219 (298)
T 2oze_A          154 DYDLIIIDTVPTPSV-----------YTN---NAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVP  219 (298)
T ss_dssp             GCSEEEEEECSSCSH-----------HHH---HHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCCEEEEECCCCccH-----------HHH---HHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence            356899999986421           011   12335899999998853211112234444544321111235544 899


Q ss_pred             ecCCCCC
Q 014461          265 NKVDLVT  271 (424)
Q Consensus       265 NK~Dl~~  271 (424)
                      |++|...
T Consensus       220 n~~~~~~  226 (298)
T 2oze_A          220 YLVDTDS  226 (298)
T ss_dssp             EESCTTC
T ss_pred             EEECCCc
Confidence            9999654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.71  E-value=0.0053  Score=55.46  Aligned_cols=27  Identities=22%  Similarity=0.526  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|..
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356679999999999999999999853

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.70  E-value=0.0047  Score=54.23  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ++..++++|++||||||+++.|.+..
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45679999999999999999998643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.70  E-value=0.0053  Score=56.17  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|-.
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356679999999999999999998853

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.66  E-value=0.0059  Score=56.41  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=23.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|-
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            45667999999999999999999885

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.65  E-value=0.0047  Score=55.19  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .+-.++++|++|+|||||++.|.|-.
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45578999999999999999998853

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.63  E-value=0.0061  Score=56.19  Aligned_cols=26  Identities=19%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|-
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            45668999999999999999999874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.63  E-value=0.0058  Score=55.61  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            355679999999999999999998853

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.63  E-value=0.0062  Score=56.02  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456679999999999999999999853

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=95.62  E-value=0.0048  Score=55.83  Aligned_cols=66  Identities=12%  Similarity=0.190  Sum_probs=38.7

Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      ...+.++++|||+.....           .   ...+..+|.+++|++.+...-.....+.+++...+.     ..+.+|
T Consensus       129 ~~~yD~viiD~pp~~~~~-----------~---~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~v  189 (254)
T 3kjh_A          129 LDKKEAVVMDMGAGIEHL-----------T---RGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI-----KKVRYV  189 (254)
T ss_dssp             HTCCSEEEEEECTTCTTC-----------C---HHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC-----SCEEEE
T ss_pred             cCCCCEEEEeCCCcccHH-----------H---HHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC-----ccEEEE
Confidence            346789999998754321           0   123466899999998742111111233344444431     347789


Q ss_pred             EecCC
Q 014461          264 MNKVD  268 (424)
Q Consensus       264 ~NK~D  268 (424)
                      +|+++
T Consensus       190 ~N~~~  194 (254)
T 3kjh_A          190 INKVR  194 (254)
T ss_dssp             EEEEC
T ss_pred             EeCCC
Confidence            99998

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.61  E-value=0.006  Score=55.86  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345678999999999999999998853

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.56  E-value=0.0067  Score=56.28  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456679999999999999999998853

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.54  E-value=0.0069  Score=56.08  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|-
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45667999999999999999999985

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.54  E-value=0.0065  Score=55.63  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=22.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|-
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567899999999999999999985

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.51  E-value=0.0067  Score=56.55  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|..
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            356679999999999999999998853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.50  E-value=0.0053  Score=54.61  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=21.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      +-.++++|++|+|||||++.+.|.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            556899999999999999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.49  E-value=0.0074  Score=55.82  Aligned_cols=27  Identities=19%  Similarity=0.402  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            356679999999999999999998853

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.48  E-value=0.007  Score=55.53  Aligned_cols=27  Identities=22%  Similarity=0.589  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345678999999999999999999853

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.47  E-value=0.0066  Score=56.01  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++..++++|++|+|||||++.+.+.
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHh
Confidence            45678999999999999999999873

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.47  E-value=0.006  Score=57.53  Aligned_cols=28  Identities=32%  Similarity=0.471  Sum_probs=24.2

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...++-.++|+|++|+|||||++.|.|-
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            4456778999999999999999999863

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.38  E-value=0.0069  Score=53.18  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+..|+++|++|+|||||++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.36  E-value=0.0085  Score=54.47  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ++..|+++|++|+|||||++.|.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999998

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.33  E-value=0.0076  Score=57.12  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=23.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++..|+|+|++|+|||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            456788999999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.31  E-value=0.0095  Score=55.82  Aligned_cols=27  Identities=22%  Similarity=0.526  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|-.
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            456679999999999999999999853

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.24  E-value=0.006  Score=54.90  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=17.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh-CC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV-GT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~-~~  162 (424)
                      ..+..++++|++|||||||++.|. +.
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345678999999999999999998 64

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.24  E-value=0.011  Score=51.81  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++..|+++|++|+||||+.+.|.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.23  E-value=0.0066  Score=57.35  Aligned_cols=26  Identities=23%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|-
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcC
Confidence            45678999999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.23  E-value=0.0092  Score=50.96  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+..++++|++|+||||+++.|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.21  E-value=0.0081  Score=52.92  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+++|++|||||||++.|..
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999975

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.20  E-value=0.0069  Score=51.55  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..|+++|++|+||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.17  E-value=0.0099  Score=54.85  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      +-.++++|++|+|||||++.|.|..
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            5578999999999999999999854

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.14  E-value=0.0092  Score=51.71  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..++++|++|+|||||++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            3578999999999999999974

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.14  E-value=0.013  Score=51.66  Aligned_cols=29  Identities=24%  Similarity=0.483  Sum_probs=24.5

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCC
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      +...++..|+++|.+|+||||+++.|.+.
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34455678999999999999999999874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.12  E-value=0.01  Score=54.02  Aligned_cols=25  Identities=20%  Similarity=0.502  Sum_probs=22.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+++|++|+|||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999876

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.08  E-value=0.0074  Score=52.79  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEEecCCCChhHHHHhHhCC
Q 014461          141 AVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999864

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=95.08  E-value=0.27  Score=45.64  Aligned_cols=67  Identities=12%  Similarity=0.082  Sum_probs=38.7

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      +.++++|||+.....             .+......+|.+++|+..............+.++..+.     ..+-+|+|+
T Consensus       202 yD~VIIDtpp~~~~~-------------da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~-----~~~GvVlN~  263 (286)
T 3la6_A          202 YDLVLIDTPPILAVT-------------DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGI-----PVKGVILNS  263 (286)
T ss_dssp             CSEEEEECCCTTTCT-------------HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTC-----CCCEEEEEE
T ss_pred             CCEEEEcCCCCcchH-------------HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCC-----CEEEEEEcC
Confidence            458999999865320             11223456899999999853211111234444544431     234578999


Q ss_pred             CCCCC
Q 014461          267 VDLVT  271 (424)
Q Consensus       267 ~Dl~~  271 (424)
                      +|...
T Consensus       264 v~~~~  268 (286)
T 3la6_A          264 IFRRA  268 (286)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            98654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.04  E-value=0.012  Score=56.85  Aligned_cols=27  Identities=33%  Similarity=0.462  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            456679999999999999999999853

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.01  E-value=0.03  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.-+++.|+||+|||+|+.++..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345677889999999999999874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.98  E-value=0.013  Score=56.44  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            345678999999999999999999843

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.98  E-value=0.026  Score=52.81  Aligned_cols=27  Identities=15%  Similarity=0.118  Sum_probs=23.1

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++..|+|+|++|+|||||++.|.+
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999998875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.96  E-value=0.012  Score=52.45  Aligned_cols=27  Identities=11%  Similarity=0.208  Sum_probs=23.3

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++-.++++|++|+|||||++.+.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999999986

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.94  E-value=0.013  Score=50.51  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.91  E-value=0.013  Score=49.50  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=18.5

Q ss_pred             eEEEEEecCCCChhHHHHhH
Q 014461          140 VAVGIIGAPNAGKSSIINYM  159 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l  159 (424)
                      ..|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.83  E-value=0.0064  Score=52.28  Aligned_cols=23  Identities=26%  Similarity=0.626  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++|+|++|+|||||++.|.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.82  E-value=0.2  Score=47.30  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....|++.|+||+|||+|+.++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            346799999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.81  E-value=0.016  Score=49.92  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|+++|.+|+||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999863

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.79  E-value=0.016  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..|++.|.||+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.79  E-value=0.014  Score=55.08  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+|+|++|+|||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999976

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.78  E-value=0.015  Score=56.06  Aligned_cols=27  Identities=19%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            345678999999999999999999843

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.77  E-value=0.011  Score=50.77  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+..++++|++|+|||||++++.+.
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.76  E-value=0.015  Score=56.07  Aligned_cols=27  Identities=26%  Similarity=0.666  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            355678999999999999999999853

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.75  E-value=0.015  Score=49.12  Aligned_cols=21  Identities=14%  Similarity=0.077  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|++.|.+||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.75  E-value=0.016  Score=56.03  Aligned_cols=27  Identities=19%  Similarity=0.458  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            355678999999999999999999853

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.73  E-value=0.013  Score=52.17  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|+++|++|+||||+.+.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.72  E-value=0.019  Score=49.65  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|++.|.+|+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.72  E-value=0.016  Score=56.27  Aligned_cols=27  Identities=22%  Similarity=0.486  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            345678999999999999999999843

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.70  E-value=0.014  Score=51.12  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..|+++|.+|+||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999976

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.69  E-value=0.014  Score=56.51  Aligned_cols=25  Identities=12%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+..++++|++|+|||||++.|.+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4567999999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.67  E-value=0.018  Score=49.75  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=20.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|++.|.+|+||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998853

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.67  E-value=0.015  Score=56.17  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ....++|+|++|+|||||++++++.
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3458999999999999999999863

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.66  E-value=0.019  Score=50.37  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|++.|.+|+||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.66  E-value=0.017  Score=50.72  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+++|.+|+|||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.65  E-value=0.018  Score=49.10  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|.+.|.+|+||||+.+.|..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.65  E-value=0.018  Score=50.55  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..|+++|++|+||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.64  E-value=0.016  Score=52.12  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++..|+|.|.+|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45678999999999999999999764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.64  E-value=0.016  Score=49.96  Aligned_cols=24  Identities=8%  Similarity=0.252  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...++++|++|+|||||+++|++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            356899999999999999999863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.62  E-value=0.018  Score=55.91  Aligned_cols=26  Identities=15%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.+.|-
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcC
Confidence            35667899999999999999999984

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=94.62  E-value=0.25  Score=44.66  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....+++.|+||+|||+++.++..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999999865

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.60  E-value=0.018  Score=50.39  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...|+++|++|+||||+...|..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.58  E-value=0.017  Score=56.03  Aligned_cols=27  Identities=15%  Similarity=0.412  Sum_probs=23.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            345678999999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.53  E-value=0.02  Score=52.31  Aligned_cols=24  Identities=17%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      .++..|+|+|++|+||||+++.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999998

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=94.49  E-value=0.018  Score=54.75  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+++.|+++|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.46  E-value=0.017  Score=55.19  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+..++++|++|+|||||++.|.+.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457999999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.45  E-value=0.018  Score=55.98  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+..++++|++|+|||||++.|.+.
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34667999999999999999999863

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.43  E-value=0.013  Score=56.71  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+++|+|++|+|||||++.|.|.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.42  E-value=0.022  Score=49.20  Aligned_cols=25  Identities=28%  Similarity=0.575  Sum_probs=21.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +++..|+++|.+|+||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.40  E-value=0.022  Score=55.59  Aligned_cols=26  Identities=23%  Similarity=0.514  Sum_probs=23.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..+-.++++|++|+|||||++.|.|-
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            45667999999999999999999984

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.40  E-value=0.018  Score=50.41  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|+++|.+|+||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.37  E-value=0.034  Score=50.42  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=22.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++.+|++.|+|||||||+...|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999999863

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.36  E-value=0.023  Score=48.87  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..|++.|.+|+||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.36  E-value=0.015  Score=55.93  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            345678999999999999999999853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.36  E-value=0.023  Score=49.63  Aligned_cols=24  Identities=13%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|++.|.+|+||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.35  E-value=0.036  Score=50.59  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+..|+++|.||+||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.34  E-value=0.017  Score=48.35  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+..++++|++|+|||||++.+.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999863

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.34  E-value=0.59  Score=46.08  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+.-|++.|+||+|||+|+.++.+
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            34456799999999999999999975

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.29  E-value=0.047  Score=50.91  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=22.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+..|++.|+|||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999863

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.26  E-value=0.023  Score=49.52  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.26  E-value=0.026  Score=49.61  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|++.|.+|+||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.22  E-value=0.027  Score=48.72  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|++.|.+|+||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999863

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.17  E-value=0.028  Score=49.46  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|++.|.+|+||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.16  E-value=0.028  Score=48.41  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=22.4

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+++..|+++|.+|+||||+.+.|..
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            34567899999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.15  E-value=0.024  Score=50.09  Aligned_cols=21  Identities=24%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.13  E-value=0.38  Score=45.41  Aligned_cols=25  Identities=16%  Similarity=0.193  Sum_probs=22.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..+.+.|+||+|||++++.++.
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~   67 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMD   67 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4677899999999999999999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.11  E-value=0.014  Score=56.20  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345678999999999999999999853

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.07  E-value=0.92  Score=44.16  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.-|++.|+||+|||+|+.++.+
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHH
Confidence            3445689999999999999999975

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.06  E-value=0.03  Score=47.94  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|+++|.+|+||||+.+.|.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467799999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.04  E-value=0.024  Score=48.55  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ++...|++.|.+|+||||+.+.|.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            345679999999999999999986

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.04  E-value=0.028  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      +...|++.|.+||||||+.+.|.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999986

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.04  E-value=0.028  Score=56.97  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+..++|+|++|+|||||+++|++.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3456999999999999999999863

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.02  E-value=0.028  Score=49.89  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|+++|.+|+||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.01  E-value=0.027  Score=49.83  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      +|++.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.00  E-value=0.033  Score=48.43  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .+...|+++|.+|+||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35678999999999999999998753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.99  E-value=0.65  Score=42.32  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .....+.+.|+||+|||+|+.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4567899999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.99  E-value=0.03  Score=48.92  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+..|++.|.+|+||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.99  E-value=0.025  Score=55.78  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ++..++|+|++|+|||||++++++.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhh
Confidence            4567999999999999999999863

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=93.91  E-value=0.04  Score=55.03  Aligned_cols=29  Identities=21%  Similarity=0.333  Sum_probs=24.5

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ....+-.++++|++|+|||||++.|.|-.
T Consensus       134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34467789999999999999999998743

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=93.88  E-value=0.031  Score=48.02  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|+++|++|+||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.81  E-value=0.034  Score=47.58  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++++|.+|+|||||+++|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.81  E-value=0.029  Score=49.90  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...|+|+|.+|+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.78  E-value=0.024  Score=48.46  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=16.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ++..|++.|.+||||||+.+.|.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999999986

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.76  E-value=0.033  Score=56.78  Aligned_cols=27  Identities=19%  Similarity=0.600  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|..
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            345678999999999999999999853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.75  E-value=0.029  Score=53.92  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=23.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++-+++++|++|+|||||++.|.+.
T Consensus        68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           68 CGIGQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            356788999999999999999999874

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=93.72  E-value=0.029  Score=53.17  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...++++|..|+|||||+|.|.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            356799999999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.69  E-value=0.033  Score=47.68  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+|+|++|+|||||+.+|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.69  E-value=0.025  Score=52.39  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=19.2

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      ++++|+||+|||||++++.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999976

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=93.67  E-value=1.8  Score=41.17  Aligned_cols=84  Identities=14%  Similarity=0.067  Sum_probs=43.5

Q ss_pred             ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEecCCCCCChh--------hHHHHHHHHhcCCCCC--e
Q 014461          223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMNKVDLVTKKK--------DLLKVAEQFKHLPGYE--R  291 (424)
Q Consensus       223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~--~  291 (424)
                      .+.+++|...............+.++..+      .|+ -+|+|++.-.....        ......+.+.+.++..  .
T Consensus       237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~------i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~  310 (349)
T 3ug7_A          237 RTAFRLVVIPEEMSILESERAMKALQKYG------IPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIA  310 (349)
T ss_dssp             TEEEEEEECSSHHHHHHHHHHHHHHHHTT------CCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEE
T ss_pred             CceEEEEECCCccHHHHHHHHHHHHHHCC------CCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            36788887663210011113334444433      455 57899997653201        1233344555545443  2


Q ss_pred             EEEEecCCCcChHHHHHHHHH
Q 014461          292 IFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      .+|.....-.|++.|......
T Consensus       311 ~iPl~~~e~~g~~~L~~~~~~  331 (349)
T 3ug7_A          311 YVPLLRTEAKGIETLKQIAKI  331 (349)
T ss_dssp             EEECCSSCSCSHHHHHHHHHH
T ss_pred             EecCCCCCCCCHHHHHHHHHH
Confidence            456677777888877654433

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.67  E-value=0.039  Score=48.94  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...|++.|.+|+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999853

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.63  E-value=0.036  Score=57.16  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            456689999999999999999998753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.60  E-value=0.021  Score=50.31  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|+|.|.+|+||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999874

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=93.60  E-value=0.36  Score=43.93  Aligned_cols=72  Identities=11%  Similarity=0.117  Sum_probs=37.3

Q ss_pred             CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEE
Q 014461          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCM  264 (424)
Q Consensus       186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~  264 (424)
                      .+.++++||||..... .+        .. . .....+|.+++++..+...-.....+.+.+..+...  .+.++ -+|+
T Consensus       115 ~yD~iiiD~~~~~~~~-~~--------~~-~-~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~--~~~~~~gvv~  181 (269)
T 1cp2_A          115 DLDYVFYDVLGDVVCG-GF--------AM-P-IREGKAQEIYIVASGEMMALYAANNISKGIQKYAKS--GGVRLGGIIC  181 (269)
T ss_dssp             TCSEEEEEEECSSCST-TT--------TH-H-HHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTT--BBCEEEEEEE
T ss_pred             CCCEEEEeCCchhhhh-hh--------hh-h-hhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhc--CCCcEEEEEe
Confidence            4679999999854211 00        00 0 012457999999887421001111234445544321  12443 5889


Q ss_pred             ecCCCC
Q 014461          265 NKVDLV  270 (424)
Q Consensus       265 NK~Dl~  270 (424)
                      |+++..
T Consensus       182 N~~~~~  187 (269)
T 1cp2_A          182 NSRKVA  187 (269)
T ss_dssp             ECCSSS
T ss_pred             ecCCcc
Confidence            999753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.56  E-value=0.043  Score=47.92  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...|++.|.+|+||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999863

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.51  E-value=0.037  Score=56.46  Aligned_cols=27  Identities=30%  Similarity=0.645  Sum_probs=23.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456689999999999999999999853

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.50  E-value=0.04  Score=48.72  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      +|++.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.50  E-value=0.042  Score=47.63  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|++.|.+|+||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=93.47  E-value=0.043  Score=48.55  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|+|.|.+|+||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=93.41  E-value=0.031  Score=50.83  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      ++++|++|+|||||++++.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999976

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.41  E-value=0.035  Score=49.30  Aligned_cols=27  Identities=15%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++-.++++|++|+|||||++.+.+.
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            345667899999999999999999853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.40  E-value=0.04  Score=46.37  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      +|++.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=93.38  E-value=0.065  Score=47.23  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+++|.+|+||||+.+.|.+
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.32  E-value=0.045  Score=50.14  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|++.|.||+||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.29  E-value=0.039  Score=56.87  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.|.|-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456689999999999999999998743

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.27  E-value=0.054  Score=46.50  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|++.|.+|+||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.24  E-value=0.04  Score=56.98  Aligned_cols=27  Identities=22%  Similarity=0.501  Sum_probs=23.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            456789999999999999999998743

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.18  E-value=0.045  Score=47.11  Aligned_cols=21  Identities=14%  Similarity=0.272  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=93.12  E-value=0.21  Score=47.16  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....+++.|+||+|||+|+.++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.12  E-value=0.054  Score=48.70  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|++.|.+|+||||+++.|..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3577899999999999999999874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.12  E-value=0.042  Score=54.50  Aligned_cols=28  Identities=18%  Similarity=0.349  Sum_probs=24.3

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...++-+++++|++|+|||||++.|.+.
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3456788999999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.046  Score=56.53  Aligned_cols=27  Identities=22%  Similarity=0.578  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            346689999999999999999999854

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=93.09  E-value=0.035  Score=57.22  Aligned_cols=27  Identities=30%  Similarity=0.479  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            456789999999999999999998743

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.08  E-value=0.052  Score=49.41  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...|+|.|.+|+||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.07  E-value=0.045  Score=51.03  Aligned_cols=28  Identities=11%  Similarity=0.144  Sum_probs=23.5

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...++-.++++|+||+|||||++.+.+.
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3445667899999999999999998864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.06  E-value=0.052  Score=52.45  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=21.7

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHh
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ...+..+|+++|.+|+||||++..+.
T Consensus        29 ~~~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           29 RSARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             HhcCccEEEEECCCCCcHHHHHHHHH
Confidence            34567999999999999999999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=93.06  E-value=0.23  Score=46.03  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....+++.|+||+|||++++++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            356799999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.05  E-value=0.04  Score=46.90  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      +|+++|++|+||||+...|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=92.98  E-value=0.076  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++++|+||+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999863

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.93  E-value=1.3  Score=43.84  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.-|++.|+||+|||+|+.++.+
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHh
Confidence            4566799999999999999999975

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.93  E-value=0.053  Score=48.95  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ++..|++.|++|+||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.90  E-value=0.042  Score=55.06  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      -.++++|++|+|||||++.|.|
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            5689999999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.89  E-value=0.052  Score=56.18  Aligned_cols=27  Identities=26%  Similarity=0.628  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            456689999999999999999999854

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.87  E-value=0.046  Score=56.44  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++-.++++|++|+|||||++.|.|-
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.86  E-value=0.054  Score=48.33  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|++.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=92.85  E-value=0.061  Score=45.70  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ...+++.|++|+|||+|++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=92.85  E-value=0.055  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|.++|+|||||+|....|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=92.77  E-value=0.064  Score=47.85  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+...|.++|+|||||+|....|..
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34455677899999999999998874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=92.75  E-value=0.062  Score=48.21  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..+|++.|.+|+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.75  E-value=0.044  Score=50.64  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      ++++|++|+|||||++++.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            99999999999999999986

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=92.71  E-value=0.053  Score=47.72  Aligned_cols=27  Identities=15%  Similarity=0.055  Sum_probs=23.3

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++-.++++|++|+|||||+..+.+
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345567799999999999999999986

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.70  E-value=0.31  Score=47.96  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.-|++.|+||+|||+|+.++.+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445699999999999999999975

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.69  E-value=0.046  Score=46.89  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|+++|.+|+||||+...|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998853

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=92.68  E-value=0.058  Score=44.96  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.5

Q ss_pred             eEEEEEecCCCChhHHHHhHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~  160 (424)
                      .-.+|+|++|+||||++.++.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            356899999999999999976

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=92.66  E-value=0.068  Score=49.64  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      +...|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=92.62  E-value=0.055  Score=49.38  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|+++|++|+|||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=92.52  E-value=0.07  Score=51.77  Aligned_cols=26  Identities=15%  Similarity=0.139  Sum_probs=22.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+..++++|++|+|||||++.|.+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            44566899999999999999999985

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=92.52  E-value=0.059  Score=45.51  Aligned_cols=21  Identities=14%  Similarity=0.305  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|++.|.+|+||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.52  E-value=0.061  Score=54.84  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ++-.++++|++|+|||||++.|.|..
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34568999999999999999999854

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.44  E-value=0.055  Score=49.39  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|+++|++|+||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=92.43  E-value=0.056  Score=48.37  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=23.3

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++-.++++|++|+|||||+..+.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence            345667899999999999999999986

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=92.42  E-value=0.22  Score=47.96  Aligned_cols=20  Identities=30%  Similarity=0.390  Sum_probs=18.2

Q ss_pred             EEEEEecCCCChhHHHHhHh
Q 014461          141 AVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~  160 (424)
                      -.+|+|++|+|||||+++++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.37  E-value=0.065  Score=54.65  Aligned_cols=25  Identities=24%  Similarity=0.656  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      +-.++++|++|+|||||++.|.|..
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999854

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.30  E-value=0.26  Score=48.59  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+.-|++.|+||+|||+|+.++.+
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            34456799999999999999999975

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.08  E-value=0.079  Score=44.64  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|++.|.+|+||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998853

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.04  E-value=0.074  Score=55.00  Aligned_cols=25  Identities=24%  Similarity=0.656  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      +-.++++|++|+|||||++.|.|..
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4468999999999999999999854

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=91.92  E-value=0.091  Score=47.17  Aligned_cols=27  Identities=22%  Similarity=0.497  Sum_probs=22.3

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++..|+++|.+|+||||+.+.|.+
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445677899999999999999999864

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=91.92  E-value=0.096  Score=48.60  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=22.6

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      +.++++|||+....              .+...+..+|.+++++..+
T Consensus       104 yD~viiD~p~~~~~--------------~~~~~l~~aD~viiv~~~~  136 (286)
T 2xj4_A          104 CDFILIDTPGGDSA--------------ITRMAHGRADLVVTPMNDS  136 (286)
T ss_dssp             CSEEEEECCSSCCH--------------HHHHHHHTCSEEEEEEESS
T ss_pred             CCEEEEcCCCCccH--------------HHHHHHHHCCEEEEEEcCC
Confidence            56899999986421              1123355679999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=91.80  E-value=0.099  Score=45.59  Aligned_cols=25  Identities=20%  Similarity=0.498  Sum_probs=21.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .....|++.|.+|+||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=91.77  E-value=0.077  Score=44.97  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+++.|++|+|||+|+..+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=91.72  E-value=0.14  Score=44.83  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .+..|+|+|++|+|||||...|....
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            35668999999999999999997643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=91.67  E-value=0.27  Score=47.14  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|++.|+||+|||+|+.++..
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHH
Confidence            34589999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=91.61  E-value=0.097  Score=46.45  Aligned_cols=24  Identities=17%  Similarity=0.309  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....+++.|++|+|||||+..+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.57  E-value=2.2  Score=41.81  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.-|++.|+||+|||+|+.++.+
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHH
Confidence            3456699999999999999999975

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=91.54  E-value=0.084  Score=53.90  Aligned_cols=27  Identities=22%  Similarity=0.382  Sum_probs=23.4

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++..++++|.+|+|||||++.|.+.
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHh
Confidence            446778999999999999999999764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=91.50  E-value=0.085  Score=48.69  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=22.0

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++-.++++|++|+|||||+..+.+
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4566789999999999999999886

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.48  E-value=0.091  Score=54.33  Aligned_cols=24  Identities=21%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKV  164 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~  164 (424)
                      .++++|++|+|||||++.|.|...
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            479999999999999999998543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=91.46  E-value=0.63  Score=46.02  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....+++.|+||+|||+|+.++..
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=91.44  E-value=0.091  Score=47.71  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+++.|+||+|||||++++.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34599999999999999999975

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=91.23  E-value=0.18  Score=41.52  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....|.+.|++|+|||++..++..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            455699999999999999999864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=91.23  E-value=0.11  Score=45.07  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.+.|++|+|||+|+.++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=91.22  E-value=0.077  Score=60.02  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++-+|++||++|+|||||++.|.+-
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcC
Confidence            45678999999999999999999863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=91.19  E-value=0.13  Score=46.32  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|++.|.+|+||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=91.19  E-value=0.48  Score=45.91  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....+++.|++|+|||+|+.++..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=91.14  E-value=0.09  Score=48.07  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+|.|.+|+||||+++.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=91.11  E-value=0.12  Score=48.14  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..|++.|.||+||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=90.99  E-value=0.13  Score=45.54  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +++..|+|-|.+|+||||+++.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4678899999999999999999863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=90.91  E-value=0.15  Score=43.72  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      +.-|++.|++|+|||||.-.|....
T Consensus        16 G~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            4568999999999999999987543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.88  E-value=0.13  Score=44.65  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|++.|.+|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=90.71  E-value=0.11  Score=45.79  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...+++.|+||+||||++.+|..
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            344589999999999999888764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=90.64  E-value=0.018  Score=51.92  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHhHhCCc
Q 014461          142 VGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ++|+|++|+|||||++++.+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            4688999999999999998743

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.61  E-value=0.11  Score=56.43  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ++-.++++|++|+|||||++.|.++.
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578999999999999999998643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=90.57  E-value=0.3  Score=45.36  Aligned_cols=23  Identities=13%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+++.|+||+|||+++.++.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHH
Confidence            35799999999999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.54  E-value=0.074  Score=57.78  Aligned_cols=26  Identities=38%  Similarity=0.618  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .+-.++++|++|+|||||++.|.|..
T Consensus       698 ~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          698 LSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34579999999999999999999853

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.47  E-value=0.13  Score=58.07  Aligned_cols=26  Identities=27%  Similarity=0.548  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      +++-.++++|++|+|||||++.|.|.
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhccc
Confidence            45678999999999999999999874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=90.46  E-value=0.15  Score=47.94  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..-|+|+|++|+|||||...|..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            45689999999999999999974

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=90.44  E-value=0.13  Score=45.10  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.5

Q ss_pred             eEEEEEecCCCChhHHHHhHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~  160 (424)
                      .-.+|+|++|+||||++.++.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            456899999999999999875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=90.36  E-value=0.092  Score=48.99  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=17.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...|+|.|++|+||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=90.28  E-value=0.14  Score=49.16  Aligned_cols=27  Identities=11%  Similarity=0.211  Sum_probs=23.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++-.+.++|++|+|||||+..+.+.
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            446678899999999999999999863

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=90.24  E-value=0.16  Score=45.37  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=21.8

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++-.++++|+||+|||||+..++.
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344566789999999999999887753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=90.20  E-value=0.14  Score=46.02  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=19.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+|.|.+|+||||+++.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999999999864

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=90.14  E-value=0.2  Score=47.18  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      +.-|++.|++|+||||+...|....
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~g  168 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKRG  168 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence            5679999999999999999998654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.14  E-value=0.3  Score=44.87  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .....+.+.|+||+|||+|+.++..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3456699999999999999999864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=90.06  E-value=0.21  Score=41.03  Aligned_cols=23  Identities=13%  Similarity=0.224  Sum_probs=20.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|.+.|++|+|||++..++..
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCcEEEECCCCccHHHHHHHHHH
Confidence            45699999999999999999864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.05  E-value=0.18  Score=45.55  Aligned_cols=27  Identities=30%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+++..|++.|.+|+||||+++.|..
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999999864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.01  E-value=0.13  Score=45.23  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|++.|.+|+||||+...|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998854

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=89.94  E-value=0.19  Score=44.63  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|+|-|.+|+||||+++.|..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=89.84  E-value=0.48  Score=44.13  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+..+++.|+||+|||+|++++.+
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHH
Confidence            3456799999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=89.75  E-value=0.16  Score=44.09  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.+.|++|+|||+|+..+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=89.74  E-value=0.069  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      .+ .++++|++|+|||||+++|.
T Consensus        60 ~G-~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           60 GG-FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             SS-EEEEEESHHHHHHHHTHHHH
T ss_pred             CC-cEEEECCCCCCHHHHHHHHH
Confidence            44 88999999999999998874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=89.71  E-value=0.16  Score=44.70  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+++.|++|+|||||+..+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=89.68  E-value=0.15  Score=57.49  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=22.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++-.++++|++|+|||||++.|.|.
T Consensus       414 ~~G~~~~ivG~sGsGKSTl~~ll~g~  439 (1284)
T 3g5u_A          414 KSGQTVALVGNSGCGKSTTVQLMQRL  439 (1284)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45668999999999999999999874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.62  E-value=0.18  Score=45.21  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+.+++|.||+||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d1wf3a2	118	d.52.3.1 (A:181-298) GTPase Era C-terminal domain	5e-21
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-19
d1egaa2	113	d.52.3.1 (A:183-295) GTPase Era C-terminal domain	4e-18
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	4e-17
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	5e-17
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	4e-16
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-15
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	6e-15
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	8e-15
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-14
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	5e-13
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-11
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-11
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	4e-11
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-11
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-08
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-07
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	2e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-06
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-06
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	6e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-06
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-05
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-05
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	3e-05
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	6e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	8e-05
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-04
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-04
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-04
d1f5na2	277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	2e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-04
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-04
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-04
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	3e-04
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-04
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	6e-04
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	8e-04
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	0.001
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	0.001
d1kk1a3	195	c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su	0.002
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	0.002
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	0.002
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.003
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	0.003
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	0.004

>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 118

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: GTPase Era C-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 85.6 bits (212), Expect = 5e-21
 Identities = 25/98 (25%), Positives = 54/98 (55%)

Query: 326 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRK 385
            S++       E++RE  +  +  E+PY++  ++ +  +  +G L I+  L   + SQ+ 
Sbjct: 4   KSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKA 63

Query: 386 ILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
           I++G+ G KI  IG    ++L ++  + V+L L+V++ 
Sbjct: 64  IVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVY 101

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 81.6 bits (200), Expect = 6e-19
 Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 9/182 (4%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           VG++G PNAGKSS++  M             T +  +  V    + +  + D PG++   
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
           S     + K         +    VL+ V D           + + +         +   +
Sbjct: 64  S-----EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SL 117

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
           + +NKVDL+ ++          +       +   S L GAGL AL + L       P  E
Sbjct: 118 VALNKVDLLEEEAVKALADALARE---GLAVLPVSALTGAGLPALKEALHALVRSTPPPE 174

Query: 322 DP 323
            P
Sbjct: 175 MP 176

>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: GTPase Era C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 77.2 bits (190), Expect = 4e-18
 Identities = 27/93 (29%), Positives = 56/93 (60%)

Query: 331 MKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGK 390
            + ++ E++RE+L+  +  E+PYS+   +  +     G   I   ++  +  Q+K+++G 
Sbjct: 8   QRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGN 67

Query: 391 NGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423
            G+KI  IG+EA ++++ +F+  VHL L V++K
Sbjct: 68  KGAKIKTIGIEARKDMQEMFEAPVHLELWVKVK 100

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 76.9 bits (188), Expect = 4e-17
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 7/189 (3%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           VG++G P+ GKS++++ +   K         T    +  V T       + D PGL+   
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                  +  +         +   ++ +  +       D   I            ++ ++
Sbjct: 64  H--QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
           +  NK+D+    ++L       + L     +F  S +   GL+ L   +  Q    P  E
Sbjct: 122 IVANKMDMPEAAENLEAFK---EKLTDDYPVFPISAVTREGLRELLFEVANQLENTP--E 176

Query: 322 DPLTMSEEV 330
            PL   EE+
Sbjct: 177 FPLYDEEEL 185

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 76.3 bits (186), Expect = 5e-17
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 10/185 (5%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDT 194
           +      + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    DT
Sbjct: 1   DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 60

Query: 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA 254
           PG             ++  ++A S++   E+++ V +  R     +         + K  
Sbjct: 61  PG---LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDE-------MVLNKLR 110

Query: 255 PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
             K   +L +NKVD V +K DLL   +       +  I   S   G  +  +   + +  
Sbjct: 111 EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 170

Query: 315 VQRPW 319
            +   
Sbjct: 171 PEATH 175

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 73.5 bits (179), Expect = 4e-16
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 15/172 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I+G PN GKS+++N ++    A V+    TT   +   +        I DT G+    
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
           +    +     +E     +   ++++ V D    L   D            +   ++ + 
Sbjct: 63  NDLVERLG---IERTLQEIEKADIVLFVLDASSPLDEED------------RKILERIKN 107

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
                V       + +   E    L     +   S LKG GL+ L + +  +
Sbjct: 108 KRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 159

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 71.0 bits (172), Expect = 4e-15
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 4/171 (2%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V   G  NAGKSS +N +   K  A + KT   T  +         ++      G     
Sbjct: 19  VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVP 78

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                +  +    +    +   + L  +  +            ++IE            +
Sbjct: 79  ----EEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
              +K+    +K  L  V E      G  ++   S LK  G+  L Q L  
Sbjct: 135 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 185

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.5 bits (171), Expect = 6e-15
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 2/180 (1%)

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
           K E   ++ V I+G PN GKS++ N ++  + A VS    TT   V   +     +    
Sbjct: 2   KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DT GL            K        ++   +V+++V D  + +T  D R+  L+ER G+
Sbjct: 62  DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGR 121

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
            +     +   +   +   +  +  K+  +  +   Y  +  TS  KG  +  +   +  
Sbjct: 122 ASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 70.2 bits (170), Expect = 8e-15
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 11/185 (5%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDT 194
           E   S  V I+G PN GKS+++N ++G KVA +S +  TT   + G++T+   QI   DT
Sbjct: 1   EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60

Query: 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA 254
           PGL            +      + A+     ++ V D+    T  D  V R ++ +  + 
Sbjct: 61  PGLHKPMDALGEFMDQEV----YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKV 116

Query: 255 PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
           P         NK+D     ++ +K   +           M S L    +  L   L+   
Sbjct: 117 PILL----VGNKLDAAKYPEEAMKAYHELLP---EAEPRMLSALDERQVAELKADLLALM 169

Query: 315 VQRPW 319
            + P+
Sbjct: 170 PEGPF 174

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 68.6 bits (166), Expect = 2e-14
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I G PNAGKSS++N + G + A V+    TT   +   +      + I DT GL    
Sbjct: 4   VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR--- 60

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
              S +  ++ +E AW  +   + ++ + D              +      + P K    
Sbjct: 61  -EASDEVERIGIERAWQEIEQADRVLFMVDGTTT---DAVDPAEIWPEFIARLPAKLPIT 116

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
           +  NK D+  +   + +V            +   S   G G+  L  +L + 
Sbjct: 117 VVRNKADITGETLGMSEV--------NGHALIRLSARTGEGVDVLRNHLKQS 160

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 66.4 bits (161), Expect = 5e-13
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 12/165 (7%)

Query: 115 KALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
                A   +  E    +K+ED  S+ + ++G    GKSS +N ++G +V ++S   +  
Sbjct: 8   NTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG 67

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234
              V+   ++A   + I DTPGL+  + GY +      ++S      +  +L V      
Sbjct: 68  PRPVMVSRSRAGFTLNIIDTPGLI--EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY 125

Query: 235 HLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLK 278
            + + D  V + I    GK            NK  +         
Sbjct: 126 RVDNLDKLVAKAITDSFGKGI---------WNKAIVALTHAQFSP 161

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.9 bits (146), Expect = 1e-11
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 16/187 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           +   G  N GKS++I  + G KV    ++   T       +        I D PG     
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----IEIEWKNHKIIDMPGFGFMM 57

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP----- 256
                   +++ E      +  + + V   V     +P+                     
Sbjct: 58  GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117

Query: 257 ---KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMTSGLKGAGLKALTQYL 310
                  ++ +NK+D +   ++++    +   +P     +     S   G  ++ L   +
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177

Query: 311 MEQAVQR 317
            E   +R
Sbjct: 178 FEVIRER 184

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.8 bits (143), Expect = 2e-11
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 12/172 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS++ N +V  K A V  +   T   V   +        + DT G+  N 
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                + +K    +     +L   ++                                 +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITK---------EDESLADFLRKSTVDTI 113

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
           L  NK + +  ++   +V  +   L G+      S      L  + + ++++
Sbjct: 114 LVANKAENL--REFEREVKPELYSL-GFGEPIPVSAEHNINLDTMLETIIKK 162

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 59.8 bits (143), Expect = 4e-11
 Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 11/174 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
           + + G  N GKSS IN ++  K +A  S K   T      ++      + +       ++
Sbjct: 26  IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260
           KS        +                 +  V + +    +     ++            
Sbjct: 86  KSEREAWGRMIETYITTR--------EELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV 137

Query: 261 VLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
           ++   K D + K K     KV  Q  ++   + + + S     G       + +
Sbjct: 138 IVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 23/184 (12%)

Query: 95  KGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSS 154
               +I  +E        +    +Q       +  +E+   D   + V + G   +GKSS
Sbjct: 15  NTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEI---DSSVLNVAVTGETGSGKSS 71

Query: 155 IINYMVGTKV----AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK 210
            IN + G       AA +     T              +  +D PG+             
Sbjct: 72  FINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGI---------GSTN 121

Query: 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270
              ++    +  +E    +          D  + + I  M K      +      KVD  
Sbjct: 122 FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK------EFYFVRTKVDSD 175

Query: 271 TKKK 274
              +
Sbjct: 176 ITNE 179

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 3/177 (1%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
           +K+  +  +G  NAGK+++++ +   ++       + T+ E+        T         
Sbjct: 11  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 70

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
             + K+     +  V +        L E    +  +    T  +  ++ L  ++ +    
Sbjct: 71  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
            ++R+  M  +   T  K  + + E          +FM S LK  G     +++ + 
Sbjct: 131 SEERLREMFGLYGQTTGKGSVSLKELNAR---PLEVFMCSVLKRQGYGEGFRWMAQY 184

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 8/171 (4%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           +  +G  NAGK+++++ +   ++A +    + T+ E+     K  T           L K
Sbjct: 3   LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
             +   +  V +  A       E  + +  +       D   +            K    
Sbjct: 63  DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV--------ILGNKIDAP 114

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
             +++ +L +    L     Q         +FM S +   G     Q+L +
Sbjct: 115 NAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 19/182 (10%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           + + + ++G  NAGK++I+    G  V  +S     T    +  +     ++ I+D  G 
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTIS----PTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +S + +                 + +       +               + ++    
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ-------------SLLVEERLAG 103

Query: 258 QKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315
              ++  NK DL        + +  E       + RI   S + G  L     +L++   
Sbjct: 104 ATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

Query: 316 QR 317
            R
Sbjct: 164 SR 165

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 15/133 (11%)

Query: 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK 184
           ++ +    K    +++   IIG PN GKS++IN +    +A    +   TT +      K
Sbjct: 98  EKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ---QWVK 154

Query: 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI 244
              ++ + DTPG++  K       +++ V  A            + D   +L       +
Sbjct: 155 VGKELELLDTPGILWPKFEDELVGLRLAVTGA------------IKDSIINLQDVAVFGL 202

Query: 245 RLIERMGKQAPPK 257
           R +E    +   +
Sbjct: 203 RFLEEHYPERLKE 215

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 11/187 (5%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I G  N+GK+S++  +    V     +    + E L       + + + D PG +  +
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
              S       +++    V     ++      + LT+    ++ ++             +
Sbjct: 61  YKLSD-----YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
           +  NK +L T  +   K+ +  +             L     K   +   E  +    S 
Sbjct: 116 IACNKSELFT-ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 174

Query: 322 DPLTMSE 328
           D    + 
Sbjct: 175 DGFKFAN 181

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 24/186 (12%), Positives = 61/186 (32%), Gaps = 19/186 (10%)

Query: 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI 189
            ++K    + V + ++G  NAGK++++  +    ++ ++         V     K +   
Sbjct: 7   RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWD 66

Query: 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249
                      +S + + D+ + V  +       E    + ++          V+     
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL----- 121

Query: 250 MGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307
                       +  NK DL+T     ++ +            +I   S L G G++   
Sbjct: 122 ------------IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

Query: 308 QYLMEQ 313
            ++ + 
Sbjct: 170 NWVCKN 175

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 14/194 (7%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
           V ++G  + GK+++++++ G+ VA      +++    T   +  +       +  F    
Sbjct: 8   VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
            +           +           L ++ +++ D++          + ++         
Sbjct: 68  TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP--- 124

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316
               V+  NK+D +      +     F      + I +   L    +  L   L E+  +
Sbjct: 125 ---FVVAANKIDRI--HGWRVHEGRPFMETFSKQDIQVQQKLD-TKVYELVGKLHEEGFE 178

Query: 317 RPWSEDPLTMSEEV 330
               +     + +V
Sbjct: 179 SERFDRVTDFASQV 192

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 9e-06
 Identities = 21/170 (12%), Positives = 50/170 (29%), Gaps = 15/170 (8%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           ++G   AGK++I+  +   ++      T  T    +  +   +    ++D  G    +  
Sbjct: 5   MVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263
           + H     +        N  E +    +            +R++     +          
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREEL----------MRMLAEDELRDAVLLVFANK 110

Query: 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
            +  + +   +   K+         +  I  T    G GL     +L  Q
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLDWLSNQ 159

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 24/190 (12%)

Query: 134 EEDQKSVAVGIIGAPNAGKSSIIN-YMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
           E+   ++ + IIG    GKSS++  +   T    ++             +     ++ I+
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 193 DTPGL----MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           DT G      L  S Y      + V          ++   + ++  + T  D   +    
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM---- 117

Query: 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308
            +      K+ R +  N+     +K  +L                  S     G++   +
Sbjct: 118 -LVGNKIDKENREVDRNEGLKFARKHSML--------------FIEASAKTCDGVQCAFE 162

Query: 309 YLMEQAVQRP 318
            L+E+ +Q P
Sbjct: 163 ELVEKIIQTP 172

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 29/178 (16%), Positives = 59/178 (33%), Gaps = 24/178 (13%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGL----M 198
           +IG    GKS++++     +    S+ T         +       +  I+DT G      
Sbjct: 9   LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 68

Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258
           +  + Y      +                +V+D+ +HLT  +    R ++ +   A    
Sbjct: 69  ITSAYYRGAVGAL----------------LVYDIAKHLTYENVE--RWLKELRDHADSNI 110

Query: 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316
             +L  NK DL   +      A  F           TS L    ++   + ++ +  +
Sbjct: 111 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYR 167

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 24/179 (13%), Positives = 63/179 (35%), Gaps = 7/179 (3%)

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTP 195
           D K++ +GI G  + GK+++   +  T++A+ S        +  G+           +  
Sbjct: 2   DFKNINLGIFGHIDHGKTTLSKVL--TEIASTSAHDKLPESQKRGITIDIGFSAFKLENY 59

Query: 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
            + L  +      ++       SA ++ ++ ++V D      +     + +++       
Sbjct: 60  RITLVDAPGHADLIRAV----VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 115

Query: 256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
               +       + + + + ++K   Q  H      I   S   G G+  L   ++   
Sbjct: 116 VVITKSDNAGT-EEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 173

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 44/307 (14%), Positives = 98/307 (31%), Gaps = 46/307 (14%)

Query: 110 HRALAKA--LLQAALERQEEEEEEVKEE----DQKSVAVGIIGAPNAGKSSIINYMV--- 160
              LA+A  L+++   R +    ++ +        ++ +G+ G P AGKS+ +       
Sbjct: 19  RATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 78

Query: 161 ---GTKVAAV-----SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK---DV 209
              G KVA +     S  T  +       M         F  P       G + +   ++
Sbjct: 79  IREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRAREL 138

Query: 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL------- 262
            +  E+A   V + E + V           D  +   I   G      +K ++       
Sbjct: 139 MLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIV 198

Query: 263 -----CMNKVDLVTKKKDLLKVAEQFKHLPG--YERIFMTSGLKGAGLKALTQYLMEQAV 315
                  N  ++   +          +        R+   S L+  G+  +   +++   
Sbjct: 199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258

Query: 316 QRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQH 375
                   LT S  + +       +++ ++ + ++    + + L   +D      +    
Sbjct: 259 A-------LTASGRLQQVR-----QQQSVEWLRKQTEEEVLNHLFANEDFDRYYRQTLLA 306

Query: 376 LITNKLS 382
           +  N LS
Sbjct: 307 VKNNTLS 313

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 14/135 (10%)

Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
           AV  +G  ++GK+ +   ++  +       T T+  +   +    + +            
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRD----TQTSITDSSAIYKVNNNRGNSLTLI----- 52

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL--IERMGKQAPPKQ 258
                     +R +      +    ++ V D              L  +           
Sbjct: 53  ---DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 109

Query: 259 KRVLCMNKVDLVTKK 273
             ++  NK D+   K
Sbjct: 110 SLLIACNKQDIAMAK 124

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 24/179 (13%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGL----M 198
           +IG    GKS +++  +  K    S  T         +       ++ I+DT G      
Sbjct: 10  VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69

Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258
           + +S Y      + V    S      +   + D     +     ++      G +     
Sbjct: 70  VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL-----CGNKKDLDA 124

Query: 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
            R +   +     ++ +L                  TS L G  ++        + + +
Sbjct: 125 DREVTFLEASRFAQENEL--------------MFLETSALTGENVEEAFVQCARKILNK 169

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 23/193 (11%), Positives = 53/193 (27%), Gaps = 26/193 (13%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +++   ++G    GK+ ++              TN    E +  +    +   + D   +
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYT----------TNAFPGEYIPTVFDNYSANVMVDGKPV 53

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
            L     + ++   R+           ++           +  ++    +       P  
Sbjct: 54  NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-- 111

Query: 258 QKRVLCMNKVDLVTKKKDLLK------------VAEQFKHLPGYERIFMTSGLKGAGLKA 305
              +L   K+DL   K  + K                     G  +    S L   GLK 
Sbjct: 112 --IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169

Query: 306 LTQYLMEQAVQRP 318
           +    +   +  P
Sbjct: 170 VFDEAIRAVLCPP 182

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 24/184 (13%), Positives = 63/184 (34%), Gaps = 21/184 (11%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            K + + I+G   AGK++I+  +   +V      T  T    +  ++  + ++ ++D  G
Sbjct: 15  NKELRILILGLDGAGKTTILYRLQIGEVV----TTKPTIGFNVETLSYKNLKLNVWDLGG 70

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
               +  +                     ++ V D         +    L   + ++   
Sbjct: 71  QTSIRPYWRCYYADTA------------AVIFVVDSTDK-DRMSTASKELHLMLQEEELQ 117

Query: 257 KQKRVLCMNKVDL---VTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
               ++  NK D    ++  +   ++         +  I  +S +KG G+     +L++ 
Sbjct: 118 DAALLVFANKQDQPGALSASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGLDWLIDV 176

Query: 314 AVQR 317
             + 
Sbjct: 177 IKEE 180

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 11/182 (6%)

Query: 122 LERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEV-- 178
           L    E  + +    Q  V V I+G    GKS ++N + G K   ++     + T  +  
Sbjct: 15  LMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM 74

Query: 179 --LGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236
             +    K    + + DT GL          D +        AV L    +       + 
Sbjct: 75  WCVPHPKKPGHILVLLDTEGL----GDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQ 130

Query: 237 TSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294
            + D    V  L  R+  ++ P +      +  D V+   D +     F      +   +
Sbjct: 131 QAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPL 190

Query: 295 TS 296
           T 
Sbjct: 191 TP 192

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 16/179 (8%), Positives = 43/179 (24%), Gaps = 18/179 (10%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           + + + ++G   +GK++ +N +   +       T       +           I   P  
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
                 Y      +      +     E                   +             
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV------------- 107

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQA 314
              ++  NK DL     +   + +             +  S  +   +    Q+L++ +
Sbjct: 108 ---LVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 15/180 (8%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           + + + I+G   AGK++I+  +   +V             V     K         T   
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +  YS+ D  + V  +     +      +  +        + ++             
Sbjct: 64  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN--------- 114

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
                  +    +T  +    +         ++ IF TS  KG GL    ++L+E    R
Sbjct: 115 -----KQDMEQAMTSSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETLKSR 168

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 21/180 (11%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            +   V I+G  NAGK++I+      +V      T+ T    +  +   +T+  ++D  G
Sbjct: 13  HQEHKVIIVGLDNAGKTTILYQFSMNEVV----HTSPTIGSNVEEIVINNTRFLMWDIGG 68

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
               +S ++                                        L + +  +   
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVD-------------STDRERISVTREELYKMLAHEDLR 115

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER---IFMTSGLKGAGLKALTQYLMEQ 313
           K   ++  NK D+  +   + ++++  K     +    I     L G GL    +++M +
Sbjct: 116 KAGLLIFANKQDVK-ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 47/312 (15%), Positives = 96/312 (30%), Gaps = 55/312 (17%)

Query: 110 HRALAKAL------LQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIIN------ 157
             ALA+A+               +  + V  +  +++ VGI G P  GKS+ I+      
Sbjct: 16  RAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 75

Query: 158 YMVGTKVAAVSRKTNTT-------THEVLGVMTKADTQICIFDTPGLMLNKSGYS----H 206
              G KVA ++   ++T         +        D    I  +P         +     
Sbjct: 76  TAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRET 135

Query: 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK 259
             +          V    V      V          +       ++ I++   +      
Sbjct: 136 MLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELA---- 191

Query: 260 RVLCMNKVDLVTKKKDLLKVAEQF---------KHLPGYERIFMTSGLKGAGLKALTQYL 310
            ++ +NK D    ++     A ++                 +   SGL G GL +L   +
Sbjct: 192 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRI 251

Query: 311 MEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSL 370
            +           LT + E+         RE+ +  +   +   +  RL+   ++R  + 
Sbjct: 252 EDH-------RSKLTATGEIAGKR-----REQDVKWMWALVHERLHQRLVGSAEVRQATA 299

Query: 371 RIEQHLITNKLS 382
             E+ +   + S
Sbjct: 300 EAERAVAGGEHS 311

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 25/179 (13%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGL----M 198
           +IG    GKS ++   V  K       T     ++  V       ++ I+DT G      
Sbjct: 7   LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 66

Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258
           +  + Y                     +++V+D+    T  + +              + 
Sbjct: 67  ITTAYYRGAM----------------GIILVYDITDERTFTNIKQWFKTVNEHANDEAQL 110

Query: 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
             V   + ++      D  +   +   +P  E    +S      +  +   L +   ++
Sbjct: 111 LLVGNKSDMETRVVTADQGEALAKELGIPFIE----SSAKNDDNVNEIFFTLAKLIQEK 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 16/175 (9%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKS 202
           IIG  + GK+S +              T     +V  +       ++ I+DT G      
Sbjct: 10  IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG------ 63

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262
               +   +       A       ++++D+        + V     ++   +    + +L
Sbjct: 64  --QERYRTITTAYYRGA----MGFILMYDITNE--ESFNAVQDWSTQIKTYSWDNAQVLL 115

Query: 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
             NK D+  ++    +   Q     G+E  F  S      +K   + L++   ++
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICEK 169

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 30/202 (14%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTP 195
            Q  V +G++G  + GK++++  + G   +  S +        LG              P
Sbjct: 5   VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKP 64

Query: 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
              + +            +       +      V        +       L+    +  P
Sbjct: 65  EAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP 124

Query: 256 PKQKRV--------------LCMNKVDLVTKKKDLLKVAEQFKHLPGYE----RIFMTSG 297
             Q R               +  NKVD+V+K++ L +  +  +   G       I   S 
Sbjct: 125 QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184

Query: 298 LKGAGLKALTQYLMEQAVQRPW 319
           L    + +L +  +E+ ++ P+
Sbjct: 185 LHKINIDSLIEG-IEEYIKTPY 205

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 17/77 (22%)

Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD------------ 186
           ++  GI+G PN GKS+    +  + +   +     T       +   D            
Sbjct: 10  NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKP 69

Query: 187 -----TQICIFDTPGLM 198
                  + +FD  GL 
Sbjct: 70  KSRVPAFLTVFDIAGLT 86

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 23/176 (13%), Positives = 59/176 (33%), Gaps = 16/176 (9%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKS 202
           +IG    GK+ ++         +    T     ++  +       ++ I+DT G      
Sbjct: 11  LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG------ 64

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262
               +  +    + +        +M+V+D+    +     +   I  + + A    ++++
Sbjct: 65  ---QERFRTITTAYYRGAM---GIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMI 116

Query: 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP 318
             NK D+  K++   +  E+     G  +   TS      ++     L      + 
Sbjct: 117 LGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIKAKM 171

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 35/258 (13%), Positives = 62/258 (24%), Gaps = 33/258 (12%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAA-------------VSRKTNTTTHEVLGVMTK---- 184
           +G++G PN GKS+  +      V               V+        + LG        
Sbjct: 3   IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62

Query: 185 ------ADTQICIFDTPGLMLNKS-----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233
                 A   + + D  GL+         G    D      +    V+            
Sbjct: 63  EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPT 122

Query: 234 RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293
            +    +       E          K      K   + K K    +AE    + G     
Sbjct: 123 DYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGI-GVNEND 181

Query: 294 MTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEV----MKNISLEVVRERLLDHVHQ 349
           +   +    L        +  +    SE        V      + + +   +RL+    +
Sbjct: 182 VWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEK 241

Query: 350 EIPYSIEHRLIDWKDLRD 367
                I         LR 
Sbjct: 242 RGYIVIPTSAAAELTLRK 259

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 24/190 (12%), Positives = 62/190 (32%), Gaps = 15/190 (7%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGT---KVAAVSRKTNTTTHEVLGVMTKADTQICIFD 193
           Q  V +G++G  + GK+++   + G      +   R+  T          +       + 
Sbjct: 3   QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYS 62

Query: 194 TPGLMLNKSGYSHKDVKV----------RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRV 243
           T  +       +    +V           + +  +  +L +  ++V   +     P +R 
Sbjct: 63  TSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 122

Query: 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM-TSGLKGAG 302
             +  ++  Q          +  VD     ++  ++ E  +         +  S L GA 
Sbjct: 123 HLMALQIIGQ-KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGAN 181

Query: 303 LKALTQYLME 312
           +  L + + +
Sbjct: 182 IDVLVKAIED 191

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 97  KLRIFQEEEEERKHRALAKALLQA-----ALERQEEEEEEVKEEDQKSVAVGIIGAPNAG 151
           K+ + ++++ E   +A A+              ++++         +       G    G
Sbjct: 50  KMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVG 109

Query: 152 KSSIINYMVGT---KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           KSS++N +      +   +S       H    V     +   + DTPG 
Sbjct: 110 KSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF 158

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 16/174 (9%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKS 202
           +IG    GK+ ++              T      +  V    +  ++ I+DT G      
Sbjct: 10  LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG------ 63

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262
               +   +      SA  L     +  +           +   +  + + A  K   VL
Sbjct: 64  --QERFRSITQSYYRSANALILTYDITCEESFR------CLPEWLREIEQYASNKVITVL 115

Query: 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316
             NK+DL  +++   + AE+F           TS  +   ++ L   L  + + 
Sbjct: 116 VGNKIDLAERREVSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLIS 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 10/176 (5%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G    GK+S++N  V        +K +      +G        +       + +  
Sbjct: 5   VIILGDSGVGKTSLMNQYVN-------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 57

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
           +    +   + V     A     V  V         + DS     + +   + P     V
Sbjct: 58  TAGQERFQSLGVAFYRGADCCVLVFDV--TAPNTFKTLDSWRDEFLIQASPRDPENFPFV 115

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
           +  NK+DL  ++    +              F TS  +   ++   Q +   A+++
Sbjct: 116 VLGNKIDLENRQVATKRAQAWCYSKNNI-PYFETSAKEAINVEQAFQTIARNALKQ 170

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 13/177 (7%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNK 201
           I+G    GK+S+++  V  K +   + T         V         + ++DT G     
Sbjct: 7   ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG----- 61

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                ++    +  A+       VL+          +  S     +      +P     V
Sbjct: 62  -----QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 116

Query: 262 LCMNKVDLVTKKKDLLKVAEQ-FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
           +  NK+D    KK + + + Q      G   +F+TS      +    + +   A+Q+
Sbjct: 117 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 46/220 (20%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-------------- 185
           V VG IG  + GK+++   +  T VAA                                 
Sbjct: 4   VNVGTIGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE 61

Query: 186 ----DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS 241
                      D PG         H D    + +  + ++    ++VV            
Sbjct: 62  YETAKRHYSHVDCPG---------HADYIKNMITGAAQMDG--AILVV-SAADGPMPQTR 109

Query: 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK------HLPGYERIFMT 295
             I L  ++G         V+ MNKVD+V   + L  V  + +        PG E   + 
Sbjct: 110 EHILLARQVGVPYI-----VVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIR 164

Query: 296 -SGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNI 334
            S L    L+ + +    +  +  W +    + + + + I
Sbjct: 165 GSALL--ALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 202

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1egaa2	113	GTPase Era C-terminal domain {Escherichia coli [Ta	99.94
d1wf3a2	118	GTPase Era C-terminal domain {Thermus thermophilus	99.93
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.88
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.87
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.87
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.85
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.85
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.85
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.85
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.85
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.85
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.84
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.84
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.84
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.84
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.83
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.83
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.82
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.81
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.81
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.81
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.8
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.79
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.75
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.64
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.63
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.62
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.56
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.55
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.53
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.52
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.5
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.5
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.49
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.46
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.46
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.38
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.35
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.3
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.29
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.18
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.99
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.95
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.26
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.18
d1okkd2	207	GTPase domain of the signal recognition particle r	98.14
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.09
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.9
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.82
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.62
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.57
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.44
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.43
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.4
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.61
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.6
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.47
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.4
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.22
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.17
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.09
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.08
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.07
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.06
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.05
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.04
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.98
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.98
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.91
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.91
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.89
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.87
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.86
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.84
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.74
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.73
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.63
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.59
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.57
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.57
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.56
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.56
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.52
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.5
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.49
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.48
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.46
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.4
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.39
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.38
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.35
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.33
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.32
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.24
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.22
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.19
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.19
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.18
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.18
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.14
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.14
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.13
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.13
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.13
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.07
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.93
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.92
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.91
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.88
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.77
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.63
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.62
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.58
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.39
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.38
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.38
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.37
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.35
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.27
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.16
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.04
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.91
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.88
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.81
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.66
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.57
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.37
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.9
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.69
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.62
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.49
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.3
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.26
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.25
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	92.23
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	92.14
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	91.92
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.91
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.77
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.53
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.39
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.36
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.25
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	90.65
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	90.38
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	90.36
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	90.33
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.28
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.07
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.07
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	89.83
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.63
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	89.52
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.43
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	89.34
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.32
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.23
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.06
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.02
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	88.97
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	88.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	88.1
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	88.1
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	87.64
d1tuea_	205	Replication protein E1 helicase domain {Human papi	87.56
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.75
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	86.61
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	86.39
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	86.1
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	86.07
d2uubc1	105	Ribosomal protein S3 N-terminal domain {Thermus th	85.77
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.49
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	85.46
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.15
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	84.89
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	84.58
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	84.36
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	84.32
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	84.12
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	83.26
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	83.04
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	81.66
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	81.63
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.63
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	81.38
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	80.82
d1xpua3	289	Transcription termination factor Rho, ATPase domai	80.55
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	80.34
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	80.14

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=4.9e-28  Score=212.24  Aligned_cols=175  Identities=26%  Similarity=0.325  Sum_probs=141.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ....|+++|.+|||||||+|+|++.+...++..+++|...........+.++.++||||+.....    .....+...++
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~----~~~~~~~~~~~   79 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD----ALGEFMDQEVY   79 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS----HHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeeccccccccccc----ccchhcccccc
Confidence            45689999999999999999999998888899999999888888888889999999999875432    11223455566


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|++.+....+..+.++++...    .+.|+++|+||+|+....+   +..+.+....+...+++|||
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~----~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA  152 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPEDELVARALKPLV----GKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSA  152 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT----TTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCT
T ss_pred             cccccccceeeeechhhhhcccccchhhheeccc----cchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEEec
Confidence            7788999999999998776665556666665543    2478999999999977532   33455666667778999999


Q ss_pred             CCCcChHHHHHHHHHhccCCCCCCCC
Q 014461          298 LKGAGLKALTQYLMEQAVQRPWSEDP  323 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~~~~~~~~  323 (424)
                      ++|.|+++|+++|.+.++++||.||.
T Consensus       153 ~~~~gi~~L~~~i~~~lpe~p~~~p~  178 (178)
T d1wf3a1         153 LDERQVAELKADLLALMPEGPFFYPE  178 (178)
T ss_dssp             TCHHHHHHHHHHHHTTCCBCCCSSCT
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999988863

>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: GTPase Era C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.1e-27  Score=189.22  Aligned_cols=100  Identities=27%  Similarity=0.574  Sum_probs=96.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCchHHHHHHHHHH
Q 014461          325 TMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANE  404 (424)
Q Consensus       325 ~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~  404 (424)
                      ++|+.+.+++++|++||+++..+++|+||++++.++.|.+.+++.++|.+.|+|+++|||+||||++|++||+||..||.
T Consensus         2 ~~Td~~~~~~i~EiIRE~il~~l~~EiPY~~~v~i~~~~~~~~~~~~I~a~I~V~~~sqk~IiIGk~G~~ik~I~~~ar~   81 (113)
T d1egaa2           2 YITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARK   81 (113)
T ss_dssp             CCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhcccccCeEEEEEEEEEeecccceEEEEEEEEECCcchhhhhhcccchHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999987778899999999999999999999999999999999999


Q ss_pred             HHHHhcCCceEEEEEEEEeC
Q 014461          405 ELRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       405 ~l~~~~~~~v~l~l~vkv~~  424 (424)
                      +|+++|+++|+|+|+|||++
T Consensus        82 ~le~~~~~kV~L~L~VKV~~  101 (113)
T d1egaa2          82 DMQEMFEAPVHLELWVKVKS  101 (113)
T ss_dssp             HHHHHTTSCEEEEEEEEETT
T ss_pred             HHHHHhCCCeEEEEEEEECC
Confidence            99999999999999999985

>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: GTPase Era C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=7.1e-27  Score=186.74  Aligned_cols=99  Identities=25%  Similarity=0.492  Sum_probs=95.5

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCchHHHHHHHHHHH
Q 014461          326 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEE  405 (424)
Q Consensus       326 ~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~  405 (424)
                      .||++++++++|++||+++..+++|+||++++.++.|.+..++.++|.+.|+|+++|||+||||++|++||+||++||++
T Consensus         4 ~TDq~~~~~i~EiIREkil~~l~~EiPY~~~v~ie~~~e~~~~~l~I~~~I~V~~~sqK~IiIGk~G~~ik~Ig~~aR~~   83 (118)
T d1wf3a2           4 KSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQ   83 (118)
T ss_dssp             SBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEeeecCCceEEEEEEEEeCccchhhhhhccCchhHHHHHHHHHHH
Confidence            47888999999999999999999999999999999999877889999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEEEEEEEEeC
Q 014461          406 LRSIFKRDVHLILQVRLKT  424 (424)
Q Consensus       406 l~~~~~~~v~l~l~vkv~~  424 (424)
                      |+++|+|+|+|+|+|||+|
T Consensus        84 le~~~~~kV~L~L~VKV~k  102 (118)
T d1wf3a2          84 LEALLGKKVYLDLEVKVYP  102 (118)
T ss_dssp             HHHHHTSEEEEEEEEEECT
T ss_pred             HHHHhCCCeEEEEEEEECC
Confidence            9999999999999999986

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.5e-24  Score=185.40  Aligned_cols=166  Identities=20%  Similarity=0.273  Sum_probs=117.2

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      .|+++|++|||||||+|+|+|.....++..+++|+....+.+...+.++.++||||+........   .......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII---SQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC---CHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccc---cccccccccccc
Confidence            58999999999999999999988888899999999888888888889999999999865432111   123345556667


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g  300 (424)
                      ..+|++++++|++.+....+..+.++++..+      .|+++|+||+|+.+.  .-.+...++.+. ++.+++++||++|
T Consensus        79 ~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~------~pviiv~NK~Dl~~~--~~~~~~~~~~~~-~~~~~i~iSAk~g  149 (171)
T d1mkya1          79 READLVLFVVDGKRGITKEDESLADFLRKST------VDTILVANKAENLRE--FEREVKPELYSL-GFGEPIPVSAEHN  149 (171)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHHHT------CCEEEEEESCCSHHH--HHHHTHHHHGGG-SSCSCEECBTTTT
T ss_pred             ccCcEEEEeeccccccccccccccccccccc------ccccccchhhhhhhh--hhhHHHHHHHhc-CCCCeEEEecCCC
Confidence            8899999999998777666666777776643      789999999999752  222333344333 4456899999999


Q ss_pred             cChHHHHHHHHHhccCCC
Q 014461          301 AGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       301 ~gi~~L~~~i~~~l~~~~  318 (424)
                      .|+++|+++|.+.+++..
T Consensus       150 ~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         150 INLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             BSHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHhCCCCC
Confidence            999999999999987654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.5e-24  Score=187.75  Aligned_cols=176  Identities=24%  Similarity=0.310  Sum_probs=122.2

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      |....+++|+++|++|||||||+|+|++.+...+++.+++|+....+.+..++..+.++||||+................
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchh
Confidence            44556799999999999999999999999988889999999888777788889999999999986432211111111223


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh-HHHHHHHHh---cCCCC
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-LLKVAEQFK---HLPGY  289 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~---~~~~~  289 (424)
                      ..+...+..+|++++|+|++.+.......+..+++..      +.|+|+|+||+|+...... ..+..+.+.   ...++
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~------~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc------CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence            3445556788999999999877666666666666654      3789999999998765432 222222222   22345


Q ss_pred             CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          290 ERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+++++||++|.|+++|++.|.+.+.
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999977653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1e-23  Score=180.90  Aligned_cols=160  Identities=23%  Similarity=0.324  Sum_probs=123.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +++|+++|.+|||||||+|+|++.+...++..+++++......+...+.++.++||||+.....    ......+..+..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~~~~~~~~   76 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD----EVERIGIERAWQ   76 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS----HHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccc----cchhHHHHHHHH
Confidence            4789999999999999999999998888888999998888888888899999999999876432    223345666777


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      .+..+|++++++|+........... .+.+....    ...|+++|+||+|+.......       .+ ....+++++||
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~iilv~NK~Dl~~~~~~~-------~~-~~~~~~~~iSA  144 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP----AKLPITVVRNKADITGETLGM-------SE-VNGHALIRLSA  144 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCEE-------EE-ETTEEEEECCT
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhcc----cccceeeccchhhhhhhHHHH-------HH-hCCCcEEEEEC
Confidence            7888999999999986555444333 34444432    247899999999987643221       11 23346999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.||++|+++|.+.+
T Consensus       145 k~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.7e-24  Score=181.92  Aligned_cols=159  Identities=22%  Similarity=0.388  Sum_probs=121.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      ++|+++|.||||||||+|+|+|.+...++..+++|+......+...+..+.++||||+.........   ..++..++..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE---RLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC---CCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHH---HHHHHHHHHH
Confidence            4899999999999999999999888888999999988877778888999999999998654332211   1235566777


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +..+|++++|+|++++....+..+...+   .     ..++++++||+|+... ....+..+.+.   ...+++++||++
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~~~~~~---~-----~~~~i~~~~k~d~~~~-~~~~~~~~~~~---~~~~~~~vSA~~  145 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRKILERI---K-----NKRYLVVINKVDVVEK-INEEEIKNKLG---TDRHMVKISALK  145 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHHHHHH---T-----TSSEEEEEEECSSCCC-CCHHHHHHHHT---CSTTEEEEEGGG
T ss_pred             HHhCCEEEEEEeCCCCcchhhhhhhhhc---c-----cccceeeeeeccccch-hhhHHHHHHhC---CCCcEEEEECCC
Confidence            8889999999999876554433333222   1     3679999999999875 33444444443   233599999999


Q ss_pred             CcChHHHHHHHHHh
Q 014461          300 GAGLKALTQYLMEQ  313 (424)
Q Consensus       300 g~gi~~L~~~i~~~  313 (424)
                      |.|+++|+++|.+.
T Consensus       146 g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         146 GEGLEKLEESIYRE  159 (160)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2e-23  Score=182.74  Aligned_cols=169  Identities=23%  Similarity=0.309  Sum_probs=113.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      .|+++|.+|||||||+|+|++...........+++..........+.++.+|||||+.....     ........++..+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~-----~~~~~~~~~l~~~   77 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS-----EGKGLGLEFLRHI   77 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGG-----GSCCSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCch-----HHHHHHHHHHHHH
Confidence            48999999999999999999988764444444444333333445677899999999865321     1112234556677


Q ss_pred             ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g  300 (424)
                      ..+|++++++|+..........+..++...... ..+.|+++|+||+|+... .......+.+.. .+. ++|++||++|
T Consensus        78 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~-~~~~~~~~~~~~-~~~-~~~~iSA~tg  153 (180)
T d1udxa2          78 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEE-EAVKALADALAR-EGL-AVLPVSALTG  153 (180)
T ss_dssp             TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCH-HHHHHHHHHHHT-TTS-CEEECCTTTC
T ss_pred             Hhhhhhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhH-HHHHHHHHHHHh-cCC-eEEEEEcCCC
Confidence            888999999998643222222333333332211 113689999999999874 344444455543 344 4999999999


Q ss_pred             cChHHHHHHHHHhccCCC
Q 014461          301 AGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       301 ~gi~~L~~~i~~~l~~~~  318 (424)
                      .|+++|++.|.+.+...+
T Consensus       154 ~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         154 AGLPALKEALHALVRSTP  171 (180)
T ss_dssp             TTHHHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHhhcC
Confidence            999999999999886554

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=3.7e-23  Score=181.12  Aligned_cols=164  Identities=13%  Similarity=0.241  Sum_probs=110.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce------eeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK  210 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt------~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~  210 (424)
                      .+.++|+++|++|+|||||+|+|++.......+...++      .......+...+..+.++|+||...           
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------   71 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-----------   71 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-----------
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccc-----------
Confidence            45689999999999999999999975543333322222      2222222455677899999999753           


Q ss_pred             hHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHh-cCC
Q 014461          211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFK-HLP  287 (424)
Q Consensus       211 ~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~-~~~  287 (424)
                       ....++..+..+|++++|+|++.+.......+..++...      +.|+++|+||+|+.....  ......+.+. ...
T Consensus        72 -~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~------~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~  144 (179)
T d1wb1a4          72 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH  144 (179)
T ss_dssp             -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             -cccchhhhhhhccccccccccccccchhhhhhhhhhhhc------CCcceeccccccccCHHHHHHHHHHHHHHHHHhh
Confidence             245556677889999999999887766556666666654      378999999999987421  1122222222 222


Q ss_pred             C--CCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          288 G--YERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       288 ~--~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      +  ..++++|||++|+|+++|+++|.+.+++.+
T Consensus       145 ~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~e  177 (179)
T d1wb1a4         145 NLKNSSIIPISAKTGFGVDELKNLIITTLNNAE  177 (179)
T ss_dssp             SGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSC
T ss_pred             cCCCCeEEEEEccCCcCHHHHHHHHHhcCCccc
Confidence            2  236999999999999999999999887543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.4e-22  Score=176.07  Aligned_cols=164  Identities=17%  Similarity=0.230  Sum_probs=111.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhh---h-hhHHHHH
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKD---V-KVRVESA  216 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~---~-~~~~~~~  216 (424)
                      .|+++|.||||||||+|+|++.+.. +++.+++|++....    ....+.++||||+..... .....   . .......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~----~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEI----EWKNHKIIDMPGFGFMMG-LPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEE----EETTEEEEECCCBSCCTT-SCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeeccccc----ccccceecccCCceeccc-cccccccccchhhhhhh
Confidence            5899999999999999999998774 78899999875432    234578999999753322 11111   1 1122233


Q ss_pred             HhhcccccEEEEEEeCCC-----------CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH-HHHh
Q 014461          217 WSAVNLFEVLMVVFDVHR-----------HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA-EQFK  284 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~-~~~~  284 (424)
                      ...+..+|++++|+|++.           +....+..+.+.+...      +.|+++|+||+|+....+...... +.+.
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~------~~p~iiv~NK~D~~~~~~~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL------DIPTIVAVNKLDKIKNVQEVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT------TCCEEEEEECGGGCSCHHHHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc------CCCEEEEEeeeehhhhHHHHHHHHHHHhc
Confidence            345677899999999852           2333444555556554      378999999999987544333322 2222


Q ss_pred             cCCC--CCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          285 HLPG--YERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       285 ~~~~--~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ....  ...++++||++|.|+++|+++|.+.+++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2111  1248999999999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.1e-22  Score=175.57  Aligned_cols=174  Identities=26%  Similarity=0.395  Sum_probs=130.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhh-hHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK-VRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~-~~~~~~  216 (424)
                      ....|+++|.+|||||||+|+|++.+.+.++..+.+++....+....+...+.++|+||......    .... ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   79 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK----RAINRLMNKAA   79 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH----HHHHHHHTCCT
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecch----hhhhhhhhhcc
Confidence            35679999999999999999999999888888888888888888888888889999999753210    0000 000011


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ......+|+++++.|.++. ......+...+.+.      ..|.++|+||+|....+.++....+.+....+..+++++|
T Consensus        80 ~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~l~~~------~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vS  152 (179)
T d1egaa1          80 SSSIGDVELVIFVVEGTRW-TPDDEMVLNKLREG------KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS  152 (179)
T ss_dssp             TSCCCCEEEEEEEEETTCC-CHHHHHHHHHHHSS------SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             ccchhhcceeEEEEecCcc-chhHHHHHHHhhhc------cCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEe
Confidence            1123567889999998642 22222333333321      3678999999999887777777777778777877899999


Q ss_pred             cCCCcChHHHHHHHHHhccCCCCCCC
Q 014461          297 GLKGAGLKALTQYLMEQAVQRPWSED  322 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~~~~~  322 (424)
                      |++|.|+++|+++|.+.++++++.||
T Consensus       153 A~~g~gi~~L~~~i~~~lpe~~~~yp  178 (179)
T d1egaa1         153 AETGLNVDTIAAIVRKHLPEATHHFP  178 (179)
T ss_dssp             TTTTTTHHHHHHHHHTTCCBCCCSSC
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999988776

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=4.9e-23  Score=181.03  Aligned_cols=169  Identities=19%  Similarity=0.228  Sum_probs=113.8

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe-cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .|+++|.||||||||+|+|++.+.. +.+.+++|+....+... .++..+.+|||||+......     .......++..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~-----~~~~~~~~l~~   76 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ-----GVGLGHQFLRH   76 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC-----TTTTHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchH-----HHHHHHHHHHH
Confidence            5999999999999999999998875 55666666655454444 45567999999998543211     11234555666


Q ss_pred             cccccEEEEEEeCCCCCCCchH---HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~---~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      +..++.++++++..........   ...............++|+++|+||+|+...........+.+.   ...+++++|
T Consensus        77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~v~~iS  153 (185)
T d1lnza2          77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT---DDYPVFPIS  153 (185)
T ss_dssp             HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC---SCCCBCCCS
T ss_pred             HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc---cCCcEEEEE
Confidence            7778999999987533222221   1122222223233335799999999999875333333333332   223589999


Q ss_pred             cCCCcChHHHHHHHHHhccCCC
Q 014461          297 GLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      |++|.|+++|++.|.+.+.+.|
T Consensus       154 A~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         154 AVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSCC
T ss_pred             CCCCCCHHHHHHHHHHhhhhCC
Confidence            9999999999999999997655

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-22  Score=173.79  Aligned_cols=160  Identities=17%  Similarity=0.160  Sum_probs=110.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +||+++|.+|||||||++++++.++..... +..+..........+  ...+.+|||+|...+..         ..   .
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~---~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ-ATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS---------LI---P   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCC-CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGG---------GH---H
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccc-cceeeeccceeeccCCCceeeeecccCCcchhcc---------ch---H
Confidence            589999999999999999999877653222 222222222223333  35678999999865421         11   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|.++..  ....+..++........++.|+++|+||+|+.+......+....+....+.. +++|||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~--s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~SA  144 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVN--SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSA  144 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCT
T ss_pred             HHhhccceEEEeecccccc--chhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCE-EEEecC
Confidence            2467789999999997532  2233444554433333346899999999999764444444556666666664 999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.||+++|++|.+.++
T Consensus       145 k~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         145 KAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             TTCTTHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHhhC
Confidence            999999999999999986

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.8e-22  Score=173.64  Aligned_cols=162  Identities=14%  Similarity=0.126  Sum_probs=106.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+||+++|.+|||||||+++|.+..+..... ..+.+..............+.+|||||...+.         . +  .-
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~---------~-~--~~   72 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYR---------T-I--TT   72 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---------H-H--HH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhH---------H-H--HH
Confidence            4789999999999999999999876543222 22222222222222233468899999975431         1 1  12


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..++.+|++|+|+|+++..  ....+..+............|+++|+||+|+........+..+.+.+..++ ++++|||
T Consensus        73 ~~~~~ad~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sa  149 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEE--SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASA  149 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHH--HHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred             HHHhcCCEEEEEEECccch--hhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCC-EEEEecC
Confidence            3478899999999997532  222233333333333344588999999999876433333344455555565 4999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.||+++|++|.+.+.
T Consensus       150 k~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         150 KDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-22  Score=173.59  Aligned_cols=161  Identities=15%  Similarity=0.113  Sum_probs=108.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ++.+||+++|.+|||||||+++++++.+..  ....+..+........+  ...+.+||++|.....            .
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------------~   66 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA------------S   66 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH------------H
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCC--ccCCceeeeeeeeeecCcceEeeccccCCCccccc------------c
Confidence            357899999999999999999999877642  22223222222223333  3467899999976431            1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                      .....+..+|++++|+|+++.  .....+..|...... ...++.|+++|+||+|+...+....+....+.+..+.. ++
T Consensus        67 ~~~~~~~~a~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~  143 (167)
T d1kaoa_          67 MRDLYIKNGQGFILVYSLVNQ--QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FM  143 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCH--HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EE
T ss_pred             chHHHhhcccceeeeeeecch--hhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCe-EE
Confidence            122345678999999999753  223344555544332 22345899999999998764433334455555555554 99


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +|||++|.||+++|+.|.+.+
T Consensus       144 e~Sak~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         144 ETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             EECTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCcCHHHHHHHHHHHH
Confidence            999999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.87  E-value=2.1e-21  Score=168.81  Aligned_cols=163  Identities=15%  Similarity=0.200  Sum_probs=111.8

Q ss_pred             hhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      +....+..||+++|.+|||||||+|+|.+..+..+....+.+..    .+...+..+.+||+||.....           
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~----~i~~~~~~~~i~d~~g~~~~~-----------   74 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKIR-----------   74 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSCGGGH-----------
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEE----EeccCCeeEeEeeccccccch-----------
Confidence            34556789999999999999999999999888766655554433    345677889999999976431           


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHh--c-CCC
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--H-LPG  288 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~-~~~  288 (424)
                       ......+..+|++++|+|+++..  .......++..... ....+.|+++|+||+|+.... ......+.+.  . ...
T Consensus        75 -~~~~~~~~~~~~ii~v~d~~d~~--s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~  150 (176)
T d1fzqa_          75 -PYWRSYFENTDILIYVIDSADRK--RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDR  150 (176)
T ss_dssp             -HHHHHHHTTCSEEEEEEETTCGG--GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSS
T ss_pred             -hHHHHHhhccceeEEeecccccc--chhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc-cHHHHHHHHHHHHHHhc
Confidence             11223467789999999997632  22333344443322 223358999999999998642 2222222221  1 112


Q ss_pred             CCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          289 YERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       289 ~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ...+++|||++|+|++++++||.+.+
T Consensus       151 ~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         151 VWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            23589999999999999999998753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.4e-22  Score=172.73  Aligned_cols=162  Identities=17%  Similarity=0.202  Sum_probs=111.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEE-EEEec--CCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL-GVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~-~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ++.+||+++|.+|||||||+++|.+.++..  ....|+..... .....  ....+.+|||+|......      +   .
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~---~   70 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA------L---A   70 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------G---T
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccccccccccccccccceeeeecCCchhhhH------H---H
Confidence            467899999999999999999999877642  22222222211 12222  233467999999865421      1   1


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                         ...+..+|++++|+|.++.  .....+..|+........++.|+++|+||+|+.+.+....+..+.+....+. .++
T Consensus        71 ---~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  144 (167)
T d1z0ja1          71 ---PMYYRGSAAAIIVYDITKE--ETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFV  144 (167)
T ss_dssp             ---HHHHTTCSEEEEEEETTCH--HHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred             ---HHHHhhccceEEEeeechh--hhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCC-EEE
Confidence               1235678999999999652  2233444454444433445689999999999976544445556667666666 499


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +|||++|.||+++|..|.+.++
T Consensus       145 e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         145 ETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEecCCCCCHHHHHHHHHHhCC
Confidence            9999999999999999999885

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.9e-22  Score=171.40  Aligned_cols=160  Identities=16%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+||+++|.+|||||||+++|++..+.. ...+.++.......+...+  ..+.+|||||...+.            ...
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~------------~~~   71 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR------------SIT   71 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH------------HHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCC-cccccccceEEEEEEEECCEEEEEEEEECCCchhhH------------HHH
Confidence            4789999999999999999999876642 2233333333333333333  457899999975321            111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...++.+|++++|+|.++..  ....+.+++..+........|+++|+||+|+........+..+.+.+..++. +++||
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~S  148 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEE--SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETS  148 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECC
T ss_pred             HHHHhccceEEEeeecccch--hhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCE-EEEEc
Confidence            23568899999999997532  2223333444333333345899999999998754333344455566655664 99999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.||+++|..|...+
T Consensus       149 Aktg~gV~e~f~~l~~~l  166 (171)
T d2ew1a1         149 AKESDNVEKLFLDLACRL  166 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999999887665

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.1e-22  Score=173.27  Aligned_cols=163  Identities=15%  Similarity=0.128  Sum_probs=112.6

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~  213 (424)
                      ..+.+||+++|.+|||||||++++++..+.  .....+..+.....+..++  ..+.+|||+|...+...         .
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---------~   71 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM---------R   71 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC---------H
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCC--cccccccccceeeEeccCCeeeeeeccccccccccccc---------c
Confidence            345789999999999999999999987764  3334444444333444444  45778999998765321         1


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (424)
                         ...+..+|++++|+|.++.  .....+..|+..+.. ....+.|+++|+||+|+...+....+..+.+....+.. +
T Consensus        72 ---~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~  145 (173)
T d2fn4a1          72 ---EQYMRAGHGFLLVFAINDR--QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-Y  145 (173)
T ss_dssp             ---HHHHHHCSEEEEEEETTCH--HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-E
T ss_pred             ---chhhccceeeeeecccccc--cccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCE-E
Confidence               1234568999999999753  222334455443321 12235799999999998764444445566666666664 9


Q ss_pred             EEEecCCCcChHHHHHHHHHhcc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|||++|.||+++|+.|.+.+.
T Consensus       146 ~e~Sak~g~gv~e~f~~l~~~i~  168 (173)
T d2fn4a1         146 FEASAKLRLNVDEAFEQLVRAVR  168 (173)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.3e-22  Score=172.29  Aligned_cols=160  Identities=17%  Similarity=0.152  Sum_probs=107.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+||+++|.+|||||||+|+|.+..+... .+..+.+..............+.+|||+|........            .
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------------~   69 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT------------K   69 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC------------H
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhh------------h
Confidence            47899999999999999999997665321 1111222222222222233467899999987653211            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..++.+|++++|+|.++..+  ...+..|+.++.... ++.|+++|+||+|+...+....+..+.+.+..+. ++++|||
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa  145 (164)
T d1z2aa1          70 AYYRGAQACVLVFSTTDRES--FEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSV  145 (164)
T ss_dssp             HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBT
T ss_pred             hhhccCceEEEEEeccchhh--hhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCC-EEEEecc
Confidence            23567899999999975322  233444555443221 2589999999999976544334445566665566 5999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.||+++|+.|.+.+
T Consensus       146 k~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         146 KEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             TTTBSSHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.5e-22  Score=171.61  Aligned_cols=157  Identities=15%  Similarity=0.172  Sum_probs=99.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +||+++|.+|||||||++++.+........   ++.......+..  ....+.+|||||...+..         ..   .
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~---------~~---~   66 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAE---AAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW---------LP---G   66 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC------------CEEEEEEEEETTEEEEEEEEECC----------------CH---H
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCC---eeeeeecceeeccccccceeeeecccccccce---------ec---c
Confidence            689999999999999999999876543222   222222222333  345688999999764421         01   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..++.+|++++|+|+++.  .....+..|+.++... .....|+++|+||+|+...++......+.+....+. ++++||
T Consensus        67 ~~~~~~d~~ilv~d~t~~--~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S  143 (168)
T d2gjsa1          67 HCMAMGDAYVIVYSVTDK--GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETS  143 (168)
T ss_dssp             HHHTSCSEEEEEEETTCH--HHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTS-EEEECB
T ss_pred             cchhhhhhhceecccccc--ccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCC-EEEEEe
Confidence            246788999999999753  2233444555544322 233579999999999976543334445556655565 499999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.||+++|+.|.+.+
T Consensus       144 ak~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         144 AALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999999998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=169.21  Aligned_cols=160  Identities=18%  Similarity=0.173  Sum_probs=108.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+||+++|.+|||||||++++++..+..... +.++..........++  ..+.+|||||...+.      .   ...  
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~---~~~--   71 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR------A---VTR--   71 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCT-TSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC------H---HHH--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccc-ccccccceeEEEEECCEEEEEEEeccCCchhHH------H---HHH--
Confidence            4789999999999999999999877653222 2222222222233333  478899999976432      1   111  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                       ..++.+|++++|+|.++..  ....+..++...........|+++|+||+|+........+..+.+.+..+. ++++||
T Consensus        72 -~~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S  147 (166)
T d1z0fa1          72 -SYYRGAAGALMVYDITRRS--TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEAS  147 (166)
T ss_dssp             -HHHHTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             -HHhcCCcEEEEEeccCchH--HHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCC-EEEEEe
Confidence             2356789999999997532  222333444443333344689999999999865444444455666666666 599999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.||+++|+.|.+.+
T Consensus       148 aktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         148 AKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-21  Score=169.60  Aligned_cols=162  Identities=17%  Similarity=0.135  Sum_probs=107.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+||+++|.+|||||||++++++..+.  .....|...........++  ..+.+|||+|...+.            ...
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~--~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------------~~~   67 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP------------AMQ   67 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH------------HHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCC--CccCcceeeccccceeeccccceecccccccccccc------------ccc
Confidence            478999999999999999999987754  2333333333333333444  357789999986541            111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ...+..+|++++|+|+++..+... ..+...+.+... ...+.|+++|+||+|+...+....+..+.+++..+. ++++|
T Consensus        68 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~-~~~e~  145 (171)
T d2erxa1          68 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFMET  145 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred             cccccceeEEEEEeecccccchhcccchhhhhhhhhc-cCCCCcEEEEeecccccccccccHHHHHHHHHHcCC-eEEEE
Confidence            234567899999999975322111 122222333221 223589999999999965443334445666665565 49999


Q ss_pred             ecCCCcChHHHHHHHHHhccC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ||++|.||+++|+.|.+.+..
T Consensus       146 Sak~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         146 SAKLNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             BTTTTBSHHHHHHHHHHTCCS
T ss_pred             cCCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999987643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=8.9e-21  Score=167.84  Aligned_cols=166  Identities=17%  Similarity=0.229  Sum_probs=110.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChh-hhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK-DVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~-~~~~~~~~~  216 (424)
                      ..+|+++|+||||||||+|+|+|.+ .+.++..+++|.......   ....+.++|++|........... .........
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---INDELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc---ccccceEEEEEeeccccccccccchhhhHHhhh
Confidence            4589999999999999999999865 445666677766554432   24567889999876543221111 112334455


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH---HhcCCCCCeEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ---FKHLPGYERIF  293 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~  293 (424)
                      +.....+|++++|+|++.+....+..+.+++...+      .|+++|+||+|+... ....+..+.   ........+++
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~------~piivv~NK~D~~~~-~~~~~~~~~~~~~l~~~~~~~~~  172 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYG------IPVIVIATKADKIPK-GKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT------CCEEEEEECGGGSCG-GGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             hccccchhhhhhhhhcccccccccccccccccccc------CcceechhhccccCH-HHHHHHHHHHHHHhcccCCCCEE
Confidence            56677889999999998877776677777777653      789999999998764 333333332   22333455799


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++||++|.|+++|+++|.+.+
T Consensus       173 ~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999998876

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.85  E-value=4.8e-21  Score=164.84  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=105.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.+||+++|.+|||||||+++|.+..+....    +|.......+...+..+.+|||||......            ...
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------------~~~   64 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTIS----PTLGFNIKTLEHRGFKLNIWDVGGQKSLRS------------YWR   64 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCC----CCSSEEEEEEEETTEEEEEEEECCSHHHHT------------TGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCccc----ceEeeeeeeccccccceeeeecCcchhhhh------------HHH
Confidence            3578999999999999999999987764332    233333444567888999999999653211            112


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHH-HHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh--cC-CCCCeEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLI-ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HL-PGYERIF  293 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l-~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~~  293 (424)
                      ..+..+|++++|+|+++....  .....++ ..+......+.|+++|+||+|+..... ..+....+.  .. .....++
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~  141 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRM--QDCQRELQSLLVEERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQ  141 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEE
T ss_pred             hhhhhhhcceeeeecccchhH--HHHHHhhhhhhhhcccCCCceEEEEeccccccccC-HHHHHHHHHhhhhhcCCCEEE
Confidence            346778999999999763222  2222222 222222334589999999999976422 222222221  11 1122589


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +|||++|+|+++++++|.+.+.
T Consensus       142 ~~Sa~~g~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         142 GCSAVTGEDLLPGIDWLLDDIS  163 (165)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=169.29  Aligned_cols=160  Identities=18%  Similarity=0.169  Sum_probs=106.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      -+||+++|.+|||||||++++.++.+........++. .....+..++  ..+.+|||||...+....            
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~------------   70 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE-FATRSIQVDGKTIKAQIWDTAGQERYRRIT------------   70 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCE-EEEEEEEETTEEEEEEEEECSSGGGTTCCC------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccce-eeeEEEEECCEEEEEEecccCCcHHHHHHH------------
Confidence            3789999999999999999999877653333222222 2222233333  468899999976543211            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|.++.  .....+.+++..+.....++.|+++|+||+|+.+...........+....+. ++++||
T Consensus        71 ~~~~~~~~~~i~v~d~~~~--~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S  147 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKH--LTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETS  147 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCH--HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             HHHhhccCeEEEEEECCCc--ccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCc-eEEEEe
Confidence            1235678999999999753  2223344455544433345689999999999976433333333444444444 599999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.|++++|+.|.+.+
T Consensus       148 a~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         148 ALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHHHHHHH
Confidence            999999999999988765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-21  Score=168.91  Aligned_cols=161  Identities=17%  Similarity=0.165  Sum_probs=107.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+||+++|.+|||||||++++.+.++....... +.+..............+.+|||||...+            .....
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------~~~~~   72 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF------------RSVTR   72 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG------------HHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhh------------hhhHH
Confidence            378999999999999999999977664222211 11111111112223446889999997543            11123


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..+..+|++++|+|.++.  .....+..++.........+.|+++|+||+|+.............+....++. +++|||
T Consensus        73 ~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa  149 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSR--ETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSA  149 (174)
T ss_dssp             TTSTTCSEEEEEEETTCH--HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCT
T ss_pred             HHhhhCCEEEEEEecccc--hhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCE-EEEeeC
Confidence            457789999999999753  22233334444433333446899999999998654444444555665555554 999999


Q ss_pred             CCCcChHHHHHHHHHhc
Q 014461          298 LKGAGLKALTQYLMEQA  314 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l  314 (424)
                      ++|.||+++|++|.+.+
T Consensus       150 k~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         150 LTGENVEEAFVQCARKI  166 (174)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999988765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=4.6e-22  Score=185.69  Aligned_cols=153  Identities=25%  Similarity=0.399  Sum_probs=111.0

Q ss_pred             HHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcCCeEEEee
Q 014461           29 RFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERTDRIVFGE   91 (424)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~~~i~f~~   91 (424)
                      ||+++..|...  .++.+|+|++++|||+|+++ ++                |+||++++..+.|..+|...+...++.+
T Consensus         1 Hm~ka~r~i~~--~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           1 HMAKARREVTE--KLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             CTTHHHHHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CHHHHHHHHHH--HHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceee
Confidence            67888888777  77889999999999999999 65                6699999999999999999988888888


Q ss_pred             c-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCC
Q 014461           92 E-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK  170 (424)
Q Consensus        92 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~  170 (424)
                      + .+.+..++          ......++...++...     .+.......+|+|+|.||||||||+|+|.+.+.+.+++.
T Consensus        79 a~~~~~~~~~----------~~~~~~~l~~~~~~~~-----~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~  143 (273)
T d1puja_          79 SVNGQGLNQI----------VPASKEILQEKFDRMR-----AKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR  143 (273)
T ss_dssp             TTTCTTGGGH----------HHHHHHHHHHHHHHHH-----HTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-----
T ss_pred             cccCCCcccc----------chhhhhhhhhhhhhhh-----hccCCCCceEEEEEecCccchhhhhhhhhccceEEECCc
Confidence            8 77777766          2223333333322211     233445689999999999999999999999999999999


Q ss_pred             CCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       171 ~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ||+|++....   ..+..+.++||||+..+.
T Consensus       144 pG~Tr~~~~i---~~~~~~~l~DTPGi~~p~  171 (273)
T d1puja_         144 PGITTSQQWV---KVGKELELLDTPGILWPK  171 (273)
T ss_dssp             -------CCE---EETTTEEEEECCCCCCSC
T ss_pred             ccccccceEE---ECCCCeEEecCCCccccC
Confidence            9999986542   235679999999998664

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=168.19  Aligned_cols=161  Identities=14%  Similarity=0.069  Sum_probs=108.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .+..||+++|.+|||||||+++|++..+.  .....|........+..++  ..+.+|||+|...+....          
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~----------   69 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP----------   69 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC----------
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCC--cccCcceecccceEEecCcEEEEeeeccccccccccccc----------
Confidence            35689999999999999999999877653  2222222222222333444  457789999987653211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|.++..  ....+..|+..+.. ....+.|+++|+||+|+...+....+..+.+.+..+.. ++
T Consensus        70 --~~~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~-~~  144 (167)
T d1xtqa1          70 --QTYSIDINGYILVYSVTSIK--SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FL  144 (167)
T ss_dssp             --GGGTSSCCEEEEEEETTCHH--HHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EE
T ss_pred             --chhhhhhhhhhhhcccchhh--hhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCE-EE
Confidence              12457799999999997532  22344444444322 12235899999999998764333344455566555654 99


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +|||++|.||+++|+.|+..+
T Consensus       145 e~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         145 ESSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHh
Confidence            999999999999999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=168.93  Aligned_cols=160  Identities=18%  Similarity=0.161  Sum_probs=106.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +||+++|.+|||||||++++++.++......+.++....... .......+.+||++|.........            .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~------------~   71 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR------------S   71 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH------------H
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHH------------H
Confidence            689999999999999999999877654333333232222222 222335689999999876532111            2


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~  298 (424)
                      .+..+|++++|+|.++..  ....+..++..+......+.|+++|+||+|+...+....+....+....++. +++|||+
T Consensus        72 ~~~~~d~~ilv~d~~~~~--sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~-~~e~Sa~  148 (173)
T d2a5ja1          72 YYRGAAGALLVYDITRRE--TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAK  148 (173)
T ss_dssp             HHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTT
T ss_pred             HhhccCEEEEEEeecChH--HHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCE-EEEecCC
Confidence            346789999999997532  2233444544443333446899999999998654333444455555555554 9999999


Q ss_pred             CCcChHHHHHHHHHhc
Q 014461          299 KGAGLKALTQYLMEQA  314 (424)
Q Consensus       299 ~g~gi~~L~~~i~~~l  314 (424)
                      +|.||+++|..|.+.+
T Consensus       149 tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         149 TACNVEEAFINTAKEI  164 (173)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.85  E-value=2.1e-21  Score=167.96  Aligned_cols=161  Identities=17%  Similarity=0.081  Sum_probs=105.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+||+++|.+|||||||+++++++++.  .....|........+..+  ...+.+|||+|.....         ...  
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~--~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~---------~~~--   69 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---------AIR--   69 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---------HHH--
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCC--cccCCccccccccccccccccccccccccccccchh---------hhh--
Confidence            3579999999999999999999877653  233333333322223333  3467899999986431         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ...++.+|++++|+|.++..  ....+..|+.++... ..++.|+++|+||+|+...+....+..+.+.+..+. .+++
T Consensus        70 -~~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e  145 (168)
T d1u8za_          70 -DNYFRSGEGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVE  145 (168)
T ss_dssp             -HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             -hhcccccceeEEEeeccchh--hhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCC-eEEE
Confidence             12356789999999997532  233444555443221 234589999999999865433333445555555555 4999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      |||++|.||+++|++|.+.+.
T Consensus       146 ~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         146 TSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999988764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-21  Score=167.60  Aligned_cols=162  Identities=13%  Similarity=0.087  Sum_probs=107.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ++.+||+++|.+|||||||+++++++++.  .....+........+..  ....+.+||++|......          ..
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~   68 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----------MR   68 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----------HH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccccceeEEeeeeEEEeccccccCcccccc----------cc
Confidence            35689999999999999999999987764  22233322222222333  334588999999875421          11


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (424)
                        ...+..+|++++|+|+++..  ....+..|+..... ...++.|+++|+||+|+........+....+........++
T Consensus        69 --~~~~~~~~~~ilv~d~~~~~--sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  144 (167)
T d1c1ya_          69 --DLYMKNGQGFALVYSITAQS--TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL  144 (167)
T ss_dssp             --HHHHHHCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEE
T ss_pred             --cccccccceeEEeeeccchh--hhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEE
Confidence              12356789999999997632  22334445444322 12345899999999999764333333344444333334599


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +|||++|.||+++|++|.+.+
T Consensus       145 e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         145 ESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHh
Confidence            999999999999999998865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-21  Score=168.31  Aligned_cols=164  Identities=16%  Similarity=0.176  Sum_probs=109.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      ..+||+++|.+|||||||+++|++.++... ....+.+..............+.+|||+|...+.         ....  
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~--   73 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---------SLAP--   73 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---------GGHH--
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhh---------hhHH--
Confidence            357999999999999999999997765422 1122222221221122223468899999986542         1111  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                       ..+..+|++++|+|.++..  ....+..+...+.....++.|+++|+||+|+...+....+..+.+....+. ++++||
T Consensus        74 -~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~-~~~e~S  149 (170)
T d1r2qa_          74 -MYYRGAQAAIVVYDITNEE--SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETS  149 (170)
T ss_dssp             -HHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             -HHhhCcceEEEEeccchhh--HHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCC-EEEEee
Confidence             2357789999999986532  222333444433333345689999999999876544444556666666565 499999


Q ss_pred             cCCCcChHHHHHHHHHhccC
Q 014461          297 GLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~~  316 (424)
                      |++|.||+++|+.|.+.+..
T Consensus       150 Ak~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         150 AKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTTCTTHHHHHHHHHHTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999988753

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.7e-21  Score=166.79  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=106.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.+||+++|.+|||||||+|+|++..+..  ....+...........  ....+.+||++|...+.            ..
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~------------~~   67 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS------------AM   67 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH------------HH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCccceeeccceeeeceeeeeeeeeccCccccc------------cc
Confidence            45899999999999999999999876642  2222222222222222  23458899999986531            11


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      ....+..++++++|+|.++..  ....+..|+..+... ..++.|+++|+||+|+... ....+..+.+.+..++. +++
T Consensus        68 ~~~~~~~~~~~iiv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~e  143 (166)
T d1ctqa_          68 RDQYMRTGEGFLCVFAINNTK--SFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVESRQAQDLARSYGIP-YIE  143 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTCC-EEE
T ss_pred             hhhhhhcccccceeecccccc--cHHHHHHHHHHHHHhcCCCCCeEEEEecccccccc-cccHHHHHHHHHHhCCe-EEE
Confidence            112356789999999997532  223344444433221 1235799999999999764 23334455666666664 999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      |||++|.||+++|++|.+.+.
T Consensus       144 ~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         144 TSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=167.91  Aligned_cols=160  Identities=18%  Similarity=0.188  Sum_probs=107.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .+||+++|.+|||||||+++++++++..  ....|.. .........+  ...+.+|||+|.......            
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------------   68 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFND--KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL------------   68 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCS--SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccchheeeeccCCccceeeeeccCCcceeccc------------
Confidence            4799999999999999999999877642  2222221 2222223333  356889999998654221            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ....+..+|++++|+|.++..  ....+..++...........|+++|+||+|+...+....+..+.+.+..+.. +++|
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~--Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~-~~e~  145 (167)
T d1z08a1          69 GPIYYRDSNGAILVYDITDED--SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHT  145 (167)
T ss_dssp             -CCSSTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEE
T ss_pred             chhhccCCceeEEEEeCCchh--HHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCe-EEEE
Confidence            113467899999999997532  2234444544333222235789999999999765444445556666666764 9999


Q ss_pred             ecCCCcChHHHHHHHHHhcc
Q 014461          296 SGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~  315 (424)
                      ||++|.||+++|++|.+.+.
T Consensus       146 Sak~~~~v~e~F~~l~~~i~  165 (167)
T d1z08a1         146 SAKQNKGIEELFLDLCKRMI  165 (167)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             ecCCCcCHHHHHHHHHHHHh
Confidence            99999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.6e-21  Score=167.74  Aligned_cols=157  Identities=13%  Similarity=0.141  Sum_probs=104.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .||+++|.+|||||||++++.+..+..  ....|..........  .....+.+|||+|...+...            ..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~------------~~   68 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL------------RP   68 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT------------GG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCC--CcCCceeeeccccccccccceeeeccccCccchhccc------------ch
Confidence            689999999999999999999877642  222222222222222  33446899999998754321            11


Q ss_pred             hhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH------------HHHHHHH
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQF  283 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~------------~~~~~~~  283 (424)
                      ..+..+|++++|+|.++..+...  ..+...+...    .++.|+++|+||+|+.......            .+..+.+
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~  144 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM  144 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh----CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHH
Confidence            34678999999999975322111  1122333332    2458999999999997653211            2233445


Q ss_pred             hcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       284 ~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      .+..+..++++|||++|.||+++|+.+.+.+
T Consensus       145 a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         145 ANRIGAFGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            5555656799999999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=7.1e-21  Score=168.51  Aligned_cols=163  Identities=17%  Similarity=0.148  Sum_probs=108.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      -+||+|+|.+|||||||+++|++..+... ....+++.......+......+.+|||||...+....            .
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~------------~   73 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT------------S   73 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC------------G
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHH------------H
Confidence            47899999999999999999997665422 1222233222222233344568899999987553211            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..++.+|++++|+|+++..  .......+...+......+.|+++|+||+|+........+....+....+.. +++|||
T Consensus        74 ~~~~~a~~~i~v~d~t~~~--s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~SA  150 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQE--SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSA  150 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCT
T ss_pred             HHhccCCEEEEEEeCcchh--hhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcc-eEEEec
Confidence            2457889999999997532  2223333333333233446899999999999875444444445555555555 999999


Q ss_pred             CCCcChHHHHHHHHHhccC
Q 014461          298 LKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~~  316 (424)
                      ++|.||+++|+.|.+.+..
T Consensus       151 k~g~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         151 LDSTNVEDAFLTMARQIKE  169 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CcCccHHHHHHHHHHHHHH
Confidence            9999999999999987754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.84  E-value=3.6e-20  Score=162.03  Aligned_cols=162  Identities=15%  Similarity=0.180  Sum_probs=108.0

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...+.++|+++|.+|||||||+++|.+.......+..+...    ......+..+.+|||||........          
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~----------   78 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTSIRPYW----------   78 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC----CCTTG----------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEE----EEEeeCCEEEEEEecccccccchhH----------
Confidence            34568999999999999999999999887765544333332    2345678889999999987543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH-hccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--CC-CCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--LP-GYE  290 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~-~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~-~~~  290 (424)
                        ...+..+|++++|+|+++..+.  .....++.. .......+.|+++|+||+|+.... ...+..+.+..  .. ...
T Consensus        79 --~~~~~~~~~ii~v~d~~d~~s~--~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  153 (182)
T d1moza_          79 --RCYYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSKELNLVELKDRSW  153 (182)
T ss_dssp             --GGTTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHHHTTTTTCCSSCE
T ss_pred             --HhhhccceeEEEEeeecccccc--hhHHHHHHHHHHhhccCCcceEEEEEeecccccc-CHHHHHHHHHHHHHhhCCC
Confidence              1245678999999999764332  334444443 333344468999999999997532 22233333221  11 122


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhcc
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      .+++|||++|+||++++++|.+.+.
T Consensus       154 ~~~e~SA~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         154 SIVASSAIKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             EEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.1e-21  Score=164.75  Aligned_cols=161  Identities=15%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+||+++|.+|||||||++++++.++......+.+........+...+  ..+.+|||||.......            .
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~------------~   73 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV------------T   73 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHH------------H
Confidence            478999999999999999999887654222222222222222233344  46789999997644210            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...+..+|++++|+|.++..  ....+..+............|+++|+||+|+........+....+.+..+.. +++||
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~-~~e~S  150 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKA--SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETS  150 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECC
T ss_pred             HHhhcCCceeEEEecCCccc--chhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCE-EEEEe
Confidence            12467889999999997532  2233334433332222345789999999999875443344455555555654 99999


Q ss_pred             cCCCcChHHHHHHHHHhc
Q 014461          297 GLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l  314 (424)
                      |++|.||+++|++|.+.+
T Consensus       151 ak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         151 AKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHc
Confidence            999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.8e-21  Score=166.45  Aligned_cols=162  Identities=18%  Similarity=0.168  Sum_probs=100.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      -+||+++|.+|||||||+++|++.++..... ..+.+....... .......+.+|||||......            ..
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------------~~   69 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS------------LG   69 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhh------------HH
Confidence            3789999999999999999999876542211 111111111111 111223578999999754321            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh----ccCCCCCCcEEEEEecCCCCCChh-hHHHHHHHHhcCCCCCe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM----GKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPGYER  291 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~----~~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~  291 (424)
                      ...++.+|++++|+|+++..+.  ..+..|+.++    ......+.|+++|+||+|+...+. ...+..+.+....+..+
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~  147 (175)
T d1ky3a_          70 VAFYRGADCCVLVYDVTNASSF--ENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP  147 (175)
T ss_dssp             -CCSTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred             HHHhhccceEEEEeeccccccc--chhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCe
Confidence            2346789999999999754322  2233333332    223334689999999999976422 23345556665556556


Q ss_pred             EEEEecCCCcChHHHHHHHHHhc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +++|||++|.||+++|++|.+.+
T Consensus       148 ~~e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         148 LFLTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.8e-21  Score=167.94  Aligned_cols=162  Identities=14%  Similarity=0.136  Sum_probs=106.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ++.+||+++|.+|||||||+++|+++.+.  .....|........+.  .....+.+||++|...+....          
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~--~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----------   70 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR----------   70 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTG----------
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCC--cccccceeeceeeeeeccCcceEEEeecccccccchhhh----------
Confidence            56789999999999999999999987764  2333333333222222  333457899999986543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH------------HH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK------------VA  280 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~--~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~------------~~  280 (424)
                        ...+..+|++++|+|+++..+....  .+...++..    ..+.|+++|+||+|+...+.....            ..
T Consensus        71 --~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~  144 (183)
T d1mh1a_          71 --PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG  144 (183)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred             --hhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh----CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHH
Confidence              1246789999999999753222111  122223322    235899999999998765332211            22


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      ..+.+..+...+++|||++|.||+++|+.|.+.+..
T Consensus       145 ~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         145 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcC
Confidence            233333454569999999999999999999987643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.84  E-value=2.9e-20  Score=161.35  Aligned_cols=159  Identities=14%  Similarity=0.119  Sum_probs=107.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.++|+++|.+|||||||++++.+........    |..............+.+|||||....            -...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~~   73 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQDKI------------RPLW   73 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEE----ETTEEEEEEEETTEEEEEEEESCCGGG------------HHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccc----eeeeeEEEeeccceeeEEecCCCcchh------------hhHH
Confidence            457899999999999999999999877654332    333333445567788999999997643            1122


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHH--hcCCC-CCeE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLPG-YERI  292 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~  292 (424)
                      ...+..+|++++|+|+++.  .....+..++... ......+.|+++|+||+|+.... ...+....+  ..... ...+
T Consensus        74 ~~~~~~~~~ii~v~D~s~~--~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~  150 (173)
T d1e0sa_          74 RHYYTGTQGLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYV  150 (173)
T ss_dssp             GGGTTTCCEEEEEEETTCG--GGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEE
T ss_pred             HhhhcccceEEEEEecccc--hhHHHHHHHHHHHhhhcccccceeeeeeecccccccc-cHHHHHHHHHHHHHHhCCCEE
Confidence            3457889999999999753  2223333444332 22233458999999999997642 122222222  11111 1258


Q ss_pred             EEEecCCCcChHHHHHHHHHhc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++|||++|+||++++++|.+.+
T Consensus       151 ~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         151 QPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEeeCCCCcCHHHHHHHHHHhc
Confidence            8999999999999999999875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.1e-21  Score=165.81  Aligned_cols=161  Identities=14%  Similarity=0.100  Sum_probs=106.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.+||+++|.+|||||||+++++++.+.  .....|..+.....+..++  ..+.+|||+|......         ..  
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~---------~~--   70 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGA---------MR--   70 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCH---------HH--
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCC--cccCcccccceeeeeeecccccccccccccccccccc---------cc--
Confidence            3589999999999999999999987653  2333333333333333333  4688999999875421         11  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ...+..+|++++|+|.++..  ....+..|+..... ......|+++|+||+|+...+....+..+.+.+..+.. +++
T Consensus        71 -~~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e  146 (171)
T d2erya1          71 -EQYMRTGEGFLLVFSVTDRG--SFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVT-YME  146 (171)
T ss_dssp             -HHHHHHCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCE-EEE
T ss_pred             -cccccccceEEEeecccccc--chhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCE-EEE
Confidence             12356789999999997532  22233444433221 12235789999999999765444445566666666664 999


Q ss_pred             EecCCCcChHHHHHHHHHhcc
Q 014461          295 TSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      |||++|.||+++|+.|.+.+.
T Consensus       147 ~Sak~~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         147 ASAKIRMNVDQAFHELVRVIR  167 (171)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999988763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.5e-21  Score=167.44  Aligned_cols=160  Identities=14%  Similarity=0.129  Sum_probs=105.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      ...+||+++|.+|||||||+++|+.+.+.  .....|............+  ..+.+|||+|...+....          
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~----------   74 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR----------   74 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTG----------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhh----------
Confidence            45689999999999999999999987654  3333333333333333333  457899999986543211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHH
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVA  280 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~  280 (424)
                        ...+..+|++++|+|+++..+...  ..+...++..    .++.|+++|+||+|+.+...            ...+..
T Consensus        75 --~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~----~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~  148 (185)
T d2atxa1          75 --PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY----APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG  148 (185)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH
T ss_pred             --hhcccccceeeeccccchHHHHHHHHHHHHHHHHhc----CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHH
Confidence              134678999999999976322111  1222333322    23589999999999976421            112233


Q ss_pred             HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +.+....+...+++|||++|.||+++|+.+.+.+
T Consensus       149 ~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         149 QKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence            4454444555699999999999999999988765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.5e-21  Score=166.88  Aligned_cols=160  Identities=16%  Similarity=0.171  Sum_probs=103.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .+||+++|.+|||||||+++++++.+..  ....|. .+.....+..  ....+.+|||||...+....           
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~-----------   69 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR-----------   69 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----C--CEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCG-----------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccceeccccccccccccccccccccccccccccceec-----------
Confidence            4789999999999999999999876542  111111 1112222323  34568999999976543211           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                       ...+..+|++++|+|+++..+.  ..+..|+...... .++.|+++|+||+|+......  .....+....+. ++++|
T Consensus        70 -~~~~~~~~~~ilv~d~~~~~Sf--~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~-~~~e~  142 (170)
T d1i2ma_          70 -DGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNL-QYYDI  142 (170)
T ss_dssp             -GGGTTTCCEEEEEEETTSGGGG--TTHHHHHHHHHHH-HCSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSS-EEEEE
T ss_pred             -chhcccccchhhcccccccccc--chhHHHHHHHhhc-cCCCceeeecchhhhhhhhhh--hHHHHHHHHcCC-EEEEE
Confidence             1246789999999999864332  2344444433221 135899999999999765322  122345555555 49999


Q ss_pred             ecCCCcChHHHHHHHHHhccCCC
Q 014461          296 SGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      ||++|.||+++|++|.+.+...+
T Consensus       143 Sak~~~~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         143 SAKSNYNFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             BTTTTBTTTHHHHHHHHHHHTCT
T ss_pred             eCCCCCCHHHHHHHHHHHHccCC
Confidence            99999999999999998886543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.2e-21  Score=164.29  Aligned_cols=161  Identities=14%  Similarity=0.076  Sum_probs=108.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.+||+++|.+|||||||++++++..+..  ....+...........  ....+.+||++|.......         .  
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---------~--   69 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVP--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM---------R--   69 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCT--TCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS---------H--
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCc--ccCcceeeccccccccccccccccccccccccccccc---------h--
Confidence            46899999999999999999999876542  2222222222222223  3356789999998755321         1  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                       ...++.+|++++|+|+++..  ....+..|+..+... ...+.|+++|+||+|+...+....+...++.+..++. +++
T Consensus        70 -~~~~~~~~~~llv~d~~d~~--Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~-~~e  145 (169)
T d1x1ra1          70 -EQYMRTGDGFLIVYSVTDKA--SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIE  145 (169)
T ss_dssp             -HHHHHHCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEE
T ss_pred             -hhhhhhccEEEEecccccch--hhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCE-EEE
Confidence             12356789999999997632  222344444443221 2235899999999999876544444566666666764 999


Q ss_pred             EecCCCc-ChHHHHHHHHHhcc
Q 014461          295 TSGLKGA-GLKALTQYLMEQAV  315 (424)
Q Consensus       295 iSA~~g~-gi~~L~~~i~~~l~  315 (424)
                      |||++|. ||+++|+.|.+.+.
T Consensus       146 ~Sak~~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         146 TSAKDPPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             EBCSSSCBSHHHHHHHHHHHHH
T ss_pred             EcCCCCCcCHHHHHHHHHHHHH
Confidence            9999986 99999999988763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.3e-21  Score=167.27  Aligned_cols=164  Identities=17%  Similarity=0.111  Sum_probs=107.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.+||+++|.+|||||||+++++++.+.  .....|............  ...+.+|||+|...+....           
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~-----------   68 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR-----------   68 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG-----------
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCC--CCcCCceeeecceeEeeCCceeeeeccccccchhhhhhh-----------
Confidence            4689999999999999999999987764  233233333322223333  3468899999987543211           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHH
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQF  283 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~  283 (424)
                       ...+..+|++++|+|+++..  ....+..+.........++.|+++|+||+|+.....            ...+..+.+
T Consensus        69 -~~~~~~~~~~ilv~d~~~~~--Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  145 (191)
T d2ngra_          69 -PLSYPQTDVFLVCFSVVSPS--SFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL  145 (191)
T ss_dssp             -GGGCTTCSEEEEEEETTCHH--HHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             -hhcccccceeecccccchHH--HHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHH
Confidence             13467899999999997632  222333222221112234589999999999875422            122334445


Q ss_pred             hcCCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461          284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       284 ~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~  317 (424)
                      ....+...+++|||++|.||+++|+.+...+...
T Consensus       146 ~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         146 ARDLKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             HHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             HHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            4444444599999999999999999998876543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-20  Score=162.74  Aligned_cols=163  Identities=15%  Similarity=0.116  Sum_probs=107.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+||+++|.+|||||||++++.+.........+.+..+.....+..+  ...+.+||+||....          ..+ .
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~----------e~~-~   70 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----------NEW-L   70 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----------HHH-H
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccc----------ccc-c
Confidence            358999999999999999999998665433333322222222223333  345789998874311          011 1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                      ....+..+|++++|+|+++.  .....+..|...+... ..++.|+++|+||+|+...++...+..+.+....+. ++++
T Consensus        71 ~~~~~~~~~~~ilvfd~t~~--~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          71 HDHCMQVGDAYLIVYSITDR--ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             HHCCCCCCSEEEEEEETTCH--HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             ccccccccceeeeeeccccc--chhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCC-eEEE
Confidence            22457889999999999753  2233445555444322 234589999999999876543334445556655566 4999


Q ss_pred             EecCCCcChHHHHHHHHHhc
Q 014461          295 TSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l  314 (424)
                      |||++|.||+++|+.|++.+
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i  167 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQV  167 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHH
Confidence            99999999999999998876

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8e-21  Score=164.97  Aligned_cols=161  Identities=14%  Similarity=0.129  Sum_probs=84.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      -+||+++|.+|||||||+++|++..+.. ...+..+.......+..++  ..+.+|||||...+....            
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~------------   72 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------------   72 (173)
T ss_dssp             EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCC-ccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHH------------
Confidence            4789999999999999999999876532 1112222222233344444  457789999976543211            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ...++.+|++++|+|+++..  ....+..+...+......+.|+++|+||+|+.............+....+. ++++||
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~-~~~e~S  149 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEK--SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETS  149 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEECC
T ss_pred             HHhccCCCEEEEEEECCChh--hHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCC-EEEEEe
Confidence            12367889999999997532  223444444444433445689999999999987544333334444444455 499999


Q ss_pred             cCCCcChHHHHHHHHHhcc
Q 014461          297 GLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       297 A~~g~gi~~L~~~i~~~l~  315 (424)
                      |++|.||+++|++|.+.+.
T Consensus       150 a~~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         150 AKANINVENAFFTLARDIK  168 (173)
T ss_dssp             C---CCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=4.1e-20  Score=162.03  Aligned_cols=160  Identities=19%  Similarity=0.167  Sum_probs=103.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      +||+++|.+|||||||+++++++++..... ..+.+..............+.+|||||.........            .
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------------~   70 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV------------A   70 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC------------G
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccccc------------c
Confidence            689999999999999999999877542111 112222222222223344688999999876543221            2


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHh----ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh-cCCCCCeEE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM----GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-HLPGYERIF  293 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~----~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~  293 (424)
                      .+..+|++++|+|.++..  ....+..|+.++    ......+.|+++|+||+|+..... ..+....+. ...+. +++
T Consensus        71 ~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~-~~~  146 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPN--TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV-ATKRAQAWCYSKNNI-PYF  146 (184)
T ss_dssp             GGTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS-CHHHHHHHHHHTTSC-CEE
T ss_pred             cccCccEEEEeecccchh--hhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccch-hHHHHHHHHHHhcCC-eEE
Confidence            356789999999996522  222233333322    222233579999999999876533 333334443 33344 599


Q ss_pred             EEecCCCcChHHHHHHHHHhcc
Q 014461          294 MTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      +|||++|.||+++|++|.+.+.
T Consensus       147 e~Sak~~~gI~e~f~~l~~~i~  168 (184)
T d1vg8a_         147 ETSAKEAINVEQAFQTIARNAL  168 (184)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999987653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.82  E-value=4.6e-20  Score=158.59  Aligned_cols=158  Identities=13%  Similarity=0.111  Sum_probs=105.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .+||+++|++|||||||+++|.+.++..  .. ..|.......+..++..+.+||+||.....            .....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~--~~-~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~------------~~~~~   66 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNE--DM-IPTVGFNMRKITKGNVTIKLWDIGGQPRFR------------SMWER   66 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCC--SC-CCCCSEEEEEEEETTEEEEEEEECCSHHHH------------TTHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCC--cc-cccceeeeeeeeeeeEEEEEeecccccccc------------ccccc
Confidence            4789999999999999999998876542  22 223333334456778899999999975321            11123


Q ss_pred             hcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCCCCeEEE
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIFM  294 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~  294 (424)
                      .+..+|++++|+|+++..  .......++..+ .....++.|+++|+||+|+.... ...+..+.+..   ......+++
T Consensus        67 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~e  143 (164)
T d1zd9a1          67 YCRGVSAIVYMVDAADQE--KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREICCYS  143 (164)
T ss_dssp             HHTTCSEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             cccccchhhccccccccc--ccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh-hHHHHHHHHHHHHHHhCCCEEEE
Confidence            457789999999997532  222333333332 22233468999999999997542 22333333321   111235899


Q ss_pred             EecCCCcChHHHHHHHHHhc
Q 014461          295 TSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +||++|.|+++++++|.+++
T Consensus       144 ~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         144 ISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC
T ss_pred             EeCcCCcCHHHHHHHHHHcc
Confidence            99999999999999999865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.3e-20  Score=158.22  Aligned_cols=160  Identities=18%  Similarity=0.129  Sum_probs=103.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .-+||+++|.+|||||||+|++++.++..  ....|+... ........  ...+.+|||+|....            ..
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------------~~   70 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF------------RS   70 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEETTEEEEEEEEECCCCGGG------------HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCC--ccccceeeeeeeeeeeecCceeeEeeecccCccee------------hh
Confidence            45799999999999999999999876542  222222111 12222223  345789999997543            11


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH---h-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER---M-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~---~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (424)
                      .....+..+|++++++|.++..+  ...+..|+++   . ......+.|+++|+||+|+.+. ....+..+.+....+..
T Consensus        71 ~~~~~~~~~~~~i~~~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~-~v~~~~~~~~~~~~~~~  147 (174)
T d1wmsa_          71 LRTPFYRGSDCCLLTFSVDDSQS--FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-QVSTEEAQAWCRDNGDY  147 (174)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-SSCHHHHHHHHHHTTCC
T ss_pred             hhhhhhhccceEEEEEeeecccc--cchhhhHHHHHHHHhccccCCCceEEEeccccchhhc-cCcHHHHHHHHHHcCCC
Confidence            22245678899999999975322  2223333332   2 2233345899999999999653 32333344555444433


Q ss_pred             eEEEEecCCCcChHHHHHHHHHhc
Q 014461          291 RIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       291 ~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++++|||++|.||+++|++|.+.+
T Consensus       148 ~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         148 PYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHH
Confidence            599999999999999999998765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.4e-20  Score=162.79  Aligned_cols=160  Identities=15%  Similarity=0.134  Sum_probs=106.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec------------CCccEEEEeCCCcccCCCCCCh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------ADTQICIFDTPGLMLNKSGYSH  206 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------------~~~~i~l~DtpG~~~~~~~~~~  206 (424)
                      .+||+++|.+|||||||+++|++..+..... +..+.......+..            ....+.+|||||...+      
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~------   77 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFI-TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF------   77 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEE-EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccC-CcccceeeEEEEEEecccccccccccceEEeccccCCcchhh------
Confidence            4789999999999999999999876532111 11111111111111            1245889999997532      


Q ss_pred             hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc
Q 014461          207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH  285 (424)
Q Consensus       207 ~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~  285 (424)
                         ....   ...+..+|++++|+|+++.  .....+..|+..+... .....|+++|+||+|+...+....+....+.+
T Consensus        78 ---~~~~---~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~  149 (186)
T d2f7sa1          78 ---RSLT---TAFFRDAMGFLLMFDLTSQ--QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD  149 (186)
T ss_dssp             ---HHHH---HHHHTTCCEEEEEEETTCH--HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ---HHHH---HHHHhcCCEEEEEEecccc--ccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH
Confidence               1111   1235789999999999652  2334555666655443 23447899999999997654444445566666


Q ss_pred             CCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          286 LPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       286 ~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ..++. +++|||++|.||++++++|.+.+
T Consensus       150 ~~~~~-~~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         150 KYGIP-YFETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             HTTCC-EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCE-EEEEeCCCCCCHHHHHHHHHHHH
Confidence            66664 99999999999999999998865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=2.8e-20  Score=164.42  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=115.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCc---------------ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTK---------------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~---------------~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~  203 (424)
                      ..+|+++|+.++|||||+++|++.-               ........+.|.+.....+.+.+..+.++||||+..+   
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f---   79 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY---   79 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH---
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHH---
Confidence            4789999999999999999997410               0112233356666666667788899999999997543   


Q ss_pred             CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH---HH
Q 014461          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK---VA  280 (424)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~---~~  280 (424)
                               .......+..+|++++|+|+.++...+.......+..++     ..|+|+++||+|+....+....   .+
T Consensus        80 ---------~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~-----~~~iIv~iNK~D~~~~~~~~~~i~~~i  145 (196)
T d1d2ea3          80 ---------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG-----VEHVVVYVNKADAVQDSEMVELVELEI  145 (196)
T ss_dssp             ---------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCCEEEEEECGGGCSCHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhc-----CCcEEEEEecccccccHHHHHHHHHHH
Confidence                     455566788899999999999888777666666666655     2578999999999865332222   22


Q ss_pred             HHHhcCCCC----CeEEEEecCCC----------cChHHHHHHHHHhcc
Q 014461          281 EQFKHLPGY----ERIFMTSGLKG----------AGLKALTQYLMEQAV  315 (424)
Q Consensus       281 ~~~~~~~~~----~~~~~iSA~~g----------~gi~~L~~~i~~~l~  315 (424)
                      +.+....++    .+++++||++|          .|+.+|++.|.+++|
T Consensus       146 ~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            222222233    36999999998          588889988888775

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.82  E-value=2.3e-20  Score=169.34  Aligned_cols=157  Identities=18%  Similarity=0.318  Sum_probs=104.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEE-----------------EecCCccEEEEeCCCcccC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGV-----------------MTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~-----------------~~~~~~~i~l~DtpG~~~~  200 (424)
                      .+.|+|+|++|+|||||+|+|++..... ....++|... ....                 +...+.++.++||||+..+
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSAVAS-REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSC-C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhcchh-eecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            3459999999999999999998754432 1111122111 0000                 2345678999999998654


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-----h
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----D  275 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-----~  275 (424)
                      ..            .....+..+|++++|+|+..++......+..++...+      .|+|+|+||+|+.....     .
T Consensus        84 ~~------------~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~------~p~iivlNK~D~~~~~~~~~~~~  145 (227)
T d1g7sa4          84 TT------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR------TPFVVAANKIDRIHGWRVHEGRP  145 (227)
T ss_dssp             TT------------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTT------CCEEEEEECGGGSTTCCCCTTCC
T ss_pred             cc------------cchhcccccceEEEEEecccCcccchhHHHHHhhcCC------CeEEEEEECccCCCchhhhhhHH
Confidence            22            1123467789999999999888887777777777654      78999999999875321     0


Q ss_pred             ---------------H----HHHHHHHhc-------------CCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          276 ---------------L----LKVAEQFKH-------------LPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       276 ---------------~----~~~~~~~~~-------------~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                                     .    .+....+..             .....+++++||++|.|+++|++.|....
T Consensus       146 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence                           0    000111111             01223689999999999999999987754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.5e-20  Score=161.45  Aligned_cols=164  Identities=16%  Similarity=0.200  Sum_probs=110.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ..+||+++|.+|||||||+++|.+.++..... +..+.......+..  ....+.+|||||......         ... 
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~-   74 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA-ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT---------LTP-   74 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC---------SHH-
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccc-cceeecceeEEEEEeccccEEEEEECCCchhhHH---------HHH-
Confidence            46899999999999999999999877642221 22222222222333  345689999999865421         011 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (424)
                        ..+..+|++++|+|+++.  .....+..++.++.... ....|+++++||.|.... .........+....++ .+++
T Consensus        75 --~~~~~~~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~-~v~~~~~~~~~~~~~~-~~~e  148 (177)
T d1x3sa1          75 --SYYRGAQGVILVYDVTRR--DTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR-EVDRNEGLKFARKHSM-LFIE  148 (177)
T ss_dssp             --HHHTTCCEEEEEEETTCH--HHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC-CSCHHHHHHHHHHTTC-EEEE
T ss_pred             --HHHhcCCEEEEEEECCCc--cccccchhhhhhhcccccccceeeEEEeeccccccc-cccHHHHHHHHHHCCC-EEEE
Confidence              235678999999998752  22334555666554322 234789999999998764 3333344555555566 4999


Q ss_pred             EecCCCcChHHHHHHHHHhccCCC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      |||++|.||+++|++|.+.+...|
T Consensus       149 ~Sa~tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         149 ASAKTCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             EeCCCCCCHHHHHHHHHHHHccCc
Confidence            999999999999999999887655

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.4e-20  Score=161.10  Aligned_cols=158  Identities=17%  Similarity=0.210  Sum_probs=103.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+||+++|.+|||||||++++++..+.  .....|...........++  ..+.+|||+|...+.          ..   
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~--~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~---   66 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI----------QR---   66 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH----------HH---
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeccccccccccccceEEEEeecccccccc----------cc---
Confidence            368999999999999999999987764  2333332222222233333  468899999975321          01   


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (424)
                      ...+..+|++++|+|+++..+.... .+..+.....  ...+.|+++|+||+|+...+....+..+.+.+..++ ++++|
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~  143 (168)
T d2atva1          67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFYEC  143 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEEEC
T ss_pred             hhhhcccccceeecccCCccchhhhhhhcccccccc--cccCcceeeeccchhhhhhccCcHHHHHHHHHHhCC-eEEEE
Confidence            1235678999999999763222111 1222222222  223589999999999975433334445555555566 49999


Q ss_pred             ecCCCcC-hHHHHHHHHHhc
Q 014461          296 SGLKGAG-LKALTQYLMEQA  314 (424)
Q Consensus       296 SA~~g~g-i~~L~~~i~~~l  314 (424)
                      ||++|.| |+++|..|.+.+
T Consensus       144 Saktg~gnV~e~F~~l~~~i  163 (168)
T d2atva1         144 SACTGEGNITEIFYELCREV  163 (168)
T ss_dssp             CTTTCTTCHHHHHHHHHHHH
T ss_pred             ccccCCcCHHHHHHHHHHHH
Confidence            9999985 999999998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=6.8e-20  Score=157.78  Aligned_cols=159  Identities=15%  Similarity=0.151  Sum_probs=104.8

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +||+++|.+|||||||++++++.++... ..+.++.......+..++  ..+.+|||||...+....         .   
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~---------~---   69 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPS-FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT---------T---   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC---------H---
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc-cCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHH---------H---
Confidence            6899999999999999999998765421 122222232223344444  457789999986553211         1   


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA  297 (424)
                      ..++.+|++++|+|.++..  ....+..+............|++++.||.|+... ....+..+.+....+. ++++|||
T Consensus        70 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa  145 (166)
T d1g16a_          70 AYYRGAMGIILVYDITDER--TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVTADQGEALAKELGI-PFIESSA  145 (166)
T ss_dssp             HHHTTEEEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-CSCHHHHHHHHHHHTC-CEEECBT
T ss_pred             HHHhcCCEEEEEEECCCcc--CHHHHHhhhhhhhccccCcceeeeecchhhhhhh-hhhHHHHHHHHHhcCC-eEEEECC
Confidence            2357789999999997632  2222333333333333345789999999998764 3334445556655566 4999999


Q ss_pred             CCCcChHHHHHHHHHhcc
Q 014461          298 LKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       298 ~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|.||+++|++|.+.+.
T Consensus       146 ~~~~~v~e~f~~l~~~i~  163 (166)
T d1g16a_         146 KNDDNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3.5e-20  Score=160.27  Aligned_cols=160  Identities=21%  Similarity=0.221  Sum_probs=107.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      .+||+++|.+|||||||+++++++++..  ....|.. ......+...  ...+.+|||+|.....      ..   .  
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~--~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~------~~---~--   69 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE--NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA------SL---A--   69 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG------GG---H--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCc--cccccccceeeccccccccccccccccccCCchhHH------HH---H--
Confidence            5799999999999999999999877643  2222221 1112223333  3568999999986432      11   1  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC---hhhHHHHHHHHhcCCCCCeE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~  292 (424)
                       ...+..+|++++|+|.++..  ....+..+............|+++|+||+|+.+.   +....+..+.+.+..++ ++
T Consensus        70 -~~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~-~~  145 (170)
T d1ek0a_          70 -PMYYRNAQAALVVYDVTKPQ--SFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGL-LF  145 (170)
T ss_dssp             -HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EE
T ss_pred             -HHHHhccceEEEEEeCCccc--chhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCC-EE
Confidence             12467889999999997532  2233444444433333445789999999998543   22233344555555566 59


Q ss_pred             EEEecCCCcChHHHHHHHHHhcc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ++|||++|.||+++|+.|.+.++
T Consensus       146 ~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         146 FETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             EECCTTTCTTHHHHHHHHHTTSC
T ss_pred             EEecCCCCcCHHHHHHHHHHHhc
Confidence            99999999999999999998875

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=1.3e-19  Score=161.69  Aligned_cols=163  Identities=21%  Similarity=0.322  Sum_probs=103.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCc-------eeeEEEEEE-----------------------ecCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-------TTHEVLGVM-----------------------TKAD  186 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~t-------t~~~~~~~~-----------------------~~~~  186 (424)
                      .+..+|+++|+.++|||||+++|++............       ......+..                       ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4568999999999999999999987322111110000       000000000                       0011


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMN  265 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~N  265 (424)
                      ..+.++||||+.++            ...+...+..+|++|+|+|+.++.... .......+..++     ..|+|+++|
T Consensus        86 r~~~iiD~PGH~df------------~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~-----i~~iIV~vN  148 (205)
T d2qn6a3          86 RRISFIDAPGHEVL------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQN  148 (205)
T ss_dssp             EEEEEEECSCHHHH------------HHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEE
T ss_pred             EEEEEeccchHHHH------------HhhhhcceeccccccccccccccccchhHHHHHHHHHHcC-----Cceeeeccc
Confidence            35889999997643            455667788899999999998876333 234445555544     247899999


Q ss_pred             cCCCCCChhhH--HHHHHHHhcCCC--CCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461          266 KVDLVTKKKDL--LKVAEQFKHLPG--YERIFMTSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       266 K~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      |+|+.......  ......+.....  ..+++++||++|.||++|++.|.+++|.
T Consensus       149 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         149 KVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            99998753211  122222222222  2358999999999999999999999874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=4.7e-20  Score=158.53  Aligned_cols=158  Identities=18%  Similarity=0.180  Sum_probs=104.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCc-eeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~t-t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .+||+++|.+|||||||++++++.++......... ...............+.+||++|......        ...   .
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~   70 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK--------SMV---Q   70 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT--------TTH---H
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhcc--------ccc---e
Confidence            57899999999999999999998776533322222 22222222334456788999999753211        001   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (424)
                      ..+..+|++++|+|+++..  ....+..|+.++.. ...++.|+++|+||+|+....+...+..+.+.+..+.. +++||
T Consensus        71 ~~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~S  147 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMA--SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETS  147 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECC
T ss_pred             eeecCCCceEEEEEeehhh--hhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCE-EEEEe
Confidence            2357889999999997632  22233444444322 12345899999999999765444455566677767774 99999


Q ss_pred             cCCC---cChHHHHHHH
Q 014461          297 GLKG---AGLKALTQYL  310 (424)
Q Consensus       297 A~~g---~gi~~L~~~i  310 (424)
                      |++|   .||+++|++|
T Consensus       148 Akt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         148 AKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             SSSGGGGSCHHHHHHHH
T ss_pred             cccCCcCcCHHHHHHHh
Confidence            9974   5999999876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-19  Score=157.29  Aligned_cols=157  Identities=13%  Similarity=0.113  Sum_probs=104.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      +.+||+++|.+|||||||++++++..+....   .++.......+..++  ..+.+|||+|....               
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~---~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~---------------   65 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLE---KTESEQYKKEMLVDGQTHLVLIREEAGAPDA---------------   65 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCC---CSSCEEEEEEEEETTEEEEEEEEECSSCCCH---------------
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcC---CccceeEEEEeecCceEEEEEEeeccccccc---------------
Confidence            4689999999999999999999988764322   222222233333444  56889999997532               


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCC--hhhHHHHHHHHhcCCCCCeE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~  292 (424)
                        ..++.+|++|+|+|+++..+... ..+..++..+........|+++|+||.|+...  +....+..+.+........+
T Consensus        66 --~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~  143 (175)
T d2bmja1          66 --KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSY  143 (175)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEE
T ss_pred             --ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeE
Confidence              12456899999999976322211 23344455555444456799999999887442  22233445556433333459


Q ss_pred             EEEecCCCcChHHHHHHHHHhc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++|||++|.|++++|..|.+.+
T Consensus       144 ~e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         144 YETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeCCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999988766

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.80  E-value=3.9e-19  Score=151.12  Aligned_cols=155  Identities=15%  Similarity=0.116  Sum_probs=102.1

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      +||+++|.+|||||||+|+|.+.++.........    ...........+.+||+||....            .......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~------------~~~~~~~   64 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDKI------------RPLWRHY   64 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC----CEEEEECSSCEEEEEECCCCGGG------------HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee----EEEEEeeeeEEEEEecCCCcccc------------hhhhhhh
Confidence            4799999999999999999998776433222221    12234567788999999997643            1122244


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHH----HhcCCCCCeEEE
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ----FKHLPGYERIFM  294 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~  294 (424)
                      ...++++++++|.++..  .......++.+. ........|+++++||+|+..... ..+....    +....+ ..+++
T Consensus        65 ~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-~~~i~~~~~~~~~~~~~-~~~~~  140 (160)
T d1r8sa_          65 FQNTQGLIFVVDSNDRE--RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRN-WYIQA  140 (160)
T ss_dssp             TTTCSEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCC-EEEEE
T ss_pred             hccceeEEEEEEecChH--HHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-HHHHHHHHHHHHHhhCC-CEEEE
Confidence            67789999999997532  222333333332 222233578999999999876422 1122111    222223 35999


Q ss_pred             EecCCCcChHHHHHHHHHhc
Q 014461          295 TSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l  314 (424)
                      |||++|+||++++++|.+++
T Consensus       141 ~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         141 TCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC
T ss_pred             eECCCCCCHHHHHHHHHhcC
Confidence            99999999999999998864

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.79  E-value=5.8e-19  Score=156.15  Aligned_cols=161  Identities=17%  Similarity=0.288  Sum_probs=103.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEE-----------------------EecCCccEEEE
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGV-----------------------MTKADTQICIF  192 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~-----------------------~~~~~~~i~l~  192 (424)
                      ...+|+++|+.++|||||+|+|++.....  .....+.|.......                       .......+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            45789999999999999999998743211  111122222111000                       01112358999


Q ss_pred             eCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       193 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ||||+..+            ...+...+..+|++++|+|+..+.... .......+...+     ..++++++||+|+.+
T Consensus        84 DtPGh~~f------------~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-----~~~iiv~inK~D~~d  146 (195)
T d1kk1a3          84 DAPGHEAL------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIELVD  146 (195)
T ss_dssp             ECSSHHHH------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSC
T ss_pred             ccchhhhh------------hHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-----Cccceeeeecccchh
Confidence            99997532            445556678899999999998765443 234445555544     235788999999987


Q ss_pred             Chhh--HHHHHHHHhcCCC--CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461          272 KKKD--LLKVAEQFKHLPG--YERIFMTSGLKGAGLKALTQYLMEQAV  315 (424)
Q Consensus       272 ~~~~--~~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~L~~~i~~~l~  315 (424)
                      ....  .......+.....  ..+++|+||++|.|+++|++.|.+.+|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         147 KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            4211  1122233333222  236899999999999999999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.9e-19  Score=157.08  Aligned_cols=160  Identities=14%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      .||+++|.+|||||||+++++.+.+.  .....|...........  ....+.+|||+|........            .
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------------~   68 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR------------P   68 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTG------------G
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC--CccCCceeecccccccccceEEeeccccccccccccccc------------c
Confidence            68999999999999999999987764  22223322222222333  33457899999976543211            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHhc
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKH  285 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~~  285 (424)
                      ..+..+|++++|+|.++..+  ...+..+.........++.|+++|+||+|+.....            ...+....+.+
T Consensus        69 ~~~~~~~~~ilv~d~~~~~S--f~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~  146 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK  146 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred             chhhhhhhhheeeecccCCC--HHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH
Confidence            34678999999999975322  22222222221111223689999999999865321            11222334444


Q ss_pred             CCCCCeEEEEecCCCc-ChHHHHHHHHHhcc
Q 014461          286 LPGYERIFMTSGLKGA-GLKALTQYLMEQAV  315 (424)
Q Consensus       286 ~~~~~~~~~iSA~~g~-gi~~L~~~i~~~l~  315 (424)
                      ..+...+++|||++|. |++++|+.+...+.
T Consensus       147 ~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         147 QIGAATYIECSALQSENSVRDIFHVATLACV  177 (179)
T ss_dssp             HHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             HhCCCeEEEEeCCCCCcCHHHHHHHHHHHHh
Confidence            4455569999999998 59999999887653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.79  E-value=1.6e-18  Score=150.19  Aligned_cols=160  Identities=20%  Similarity=0.229  Sum_probs=104.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+.+||+++|.+|||||||+|+|.+.++.......+++...    ....+.++.++|++|.......         ..  
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~---------~~--   77 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQESLRSS---------WN--   77 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEE----EEETTEEEEEEECCC----CGG---------GH--
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEE----EeecceEEEEeccccccccccc---------hh--
Confidence            45689999999999999999999998887666555544332    3356788999999997543210         11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh--c-CCCCCeEE
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--H-LPGYERIF  293 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~-~~~~~~~~  293 (424)
                       .....++++++++|.++......... ..............|+++|+||+|+..... ..+..+.+.  . .....+++
T Consensus        78 -~~~~~~~~~i~v~d~~d~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~  154 (177)
T d1zj6a1          78 -TYYTNTEFVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHIQ  154 (177)
T ss_dssp             -HHHTTCCEEEEEEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEEEE
T ss_pred             -hhhccceeeeeecccccccchhhhhh-hhhhhhhcccccceEEEEEEEcccccccCc-HHHHHHHHHHHhhHhcCCEEE
Confidence             12456799999999976433322211 111112222223589999999999976422 222222222  1 12223699


Q ss_pred             EEecCCCcChHHHHHHHHHhc
Q 014461          294 MTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       294 ~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +|||++|+|+++++++|.+.+
T Consensus       155 ~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         155 ACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999876

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=6.4e-19  Score=156.82  Aligned_cols=145  Identities=19%  Similarity=0.205  Sum_probs=102.3

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCc-----------ceeec-----CCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTK-----------VAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~-----------~~~~~-----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      +.++|+++|++++|||||+++|+...           .....     ...+.|.+.....+.+.+.++.|+||||+.++ 
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df-   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh-
Confidence            35799999999999999999997310           00011     11267777777778889999999999998654 


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHHHHH
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLKVA  280 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~~  280 (424)
                                 +..+...+..+|++|+|+|+..+...+....+..+...+      .| +++++||+|+.+..+.+....
T Consensus        81 -----------~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~g------i~~iiv~iNK~D~~~~~~~~~~~~  143 (204)
T d2c78a3          81 -----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG------VPYIVVFMNKVDMVDDPELLDLVE  143 (204)
T ss_dssp             -----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTT------CCCEEEEEECGGGCCCHHHHHHHH
T ss_pred             -----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEEecccCCCHHHHHHHH
Confidence                       445556778899999999999988887777777777764      44 677899999987543333332


Q ss_pred             HHHh---cCCC----CCeEEEEecCCC
Q 014461          281 EQFK---HLPG----YERIFMTSGLKG  300 (424)
Q Consensus       281 ~~~~---~~~~----~~~~~~iSA~~g  300 (424)
                      +++.   ...+    ...++++||..|
T Consensus       144 ~~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         144 MEVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             HHHHHHHHhcCCCcccceeeeeechhh
Confidence            2222   1112    235888888754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3.9e-18  Score=145.02  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=102.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (424)
                      .||+++|.+|||||||+|+|.+.+++.+.+..+++.    ......+....++|++|.......            ....
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~   64 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS----EELAIGNIKFTTFDLGGHIQARRL------------WKDY   64 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEE----EEECCTTCCEEEEECCCSGGGGGG------------GGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeE----EEeccCCeeEEEEeeccchhhhhh------------Hhhh
Confidence            479999999999999999999988765554444333    345567788999999997643210            1123


Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC----------CCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL----------PGY  289 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----------~~~  289 (424)
                      ...++++++++|.++..... .....+..........+.|+++++||.|+.... ...+..+.+...          ...
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~  142 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFD-EARVELDALFNIAELKDVPFVILGNKIDAPNAV-SEAELRSALGLLNTTGSQRIEGQRP  142 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHH-HHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC-CHHHHHHHHTCSSCCC---CCSSCC
T ss_pred             hhheeeeeeeccccchhhhh-hhhHHHHhhhhhhccCCceEEEEeccccccccC-CHHHHHHHhhhhhhhHHHhhcccCC
Confidence            56689999999997532221 112222222233334458899999999997642 222222332111          112


Q ss_pred             CeEEEEecCCCcChHHHHHHHHH
Q 014461          290 ERIFMTSGLKGAGLKALTQYLME  312 (424)
Q Consensus       290 ~~~~~iSA~~g~gi~~L~~~i~~  312 (424)
                      ..+++|||++|+|++++++||.+
T Consensus       143 ~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         143 VEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CEEEEeeCCCCCCHHHHHHHHhC
Confidence            25899999999999999999975

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=8.8e-18  Score=146.39  Aligned_cols=172  Identities=20%  Similarity=0.188  Sum_probs=97.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (424)
                      ....++|+++|.||||||||+|+|++.+........+++...........+......++++......... .........
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   91 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMK-RKWQRALGE   91 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCH-HHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhh-hhhhhhhhh
Confidence            4457999999999999999999999988766666666666555555555555555555554433221111 111111222


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCCCCeE
Q 014461          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERI  292 (424)
Q Consensus       216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~  292 (424)
                      ........+.++.+.+...............+...      ..++++++||+|+.....   ......+.+....+..++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhheeEEEEeecccccchhHHHHHHHHhhhc------cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence            22234455667777777654433333333333332      367899999999987421   222333444444556679


Q ss_pred             EEEecCCCcChHHHHHHHHHhc
Q 014461          293 FMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       293 ~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +++||++|.|+++|++.|.+.+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999997754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.75  E-value=1.7e-17  Score=141.79  Aligned_cols=161  Identities=19%  Similarity=0.190  Sum_probs=106.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.++|+++|.+|||||||+|++++.++..+..    |..........++..+.++|++|......            ...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~   67 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIP----TIGFNVETVTYKNLKFQVWDLGGLTSIRP------------YWR   67 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEEETTEEEEEEEECCCGGGGG------------GGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceec----ccceeeeeeccCceEEEEeeccccccccc------------cch
Confidence            46899999999999999999999887754333    22233334556788899999999764321            111


Q ss_pred             hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCCCCeEEE
Q 014461          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIFM  294 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~  294 (424)
                      .....++.+++++|..+.... ......+............|+++|+||.|+..... ..+.......   .....++++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~  145 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRI-GISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFK  145 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTH-HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEE
T ss_pred             hhhhhhhhhhhhhhhhhcchh-hhccchhhhhhhhhccccceEEEEEeecccccccc-HHHHHHHHHHHHHhcCCCEEEE
Confidence            335667999999998643322 22222223333333334578999999999976532 2222222211   112236999


Q ss_pred             EecCCCcChHHHHHHHHHhccC
Q 014461          295 TSGLKGAGLKALTQYLMEQAVQ  316 (424)
Q Consensus       295 iSA~~g~gi~~L~~~i~~~l~~  316 (424)
                      |||++|.||++++++|.+.+..
T Consensus       146 ~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         146 TSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.73  E-value=3e-17  Score=142.54  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=98.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (424)
                      .+..||+++|.+|||||||+|+|.+..+.......+.+...    ....+..+.++|++|.......            .
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------------~   74 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHIQARRV------------W   74 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE----EEETTEEEEEEEECC----CCG------------G
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE----EEecccccccccccchhhhhhH------------H
Confidence            56789999999999999999999998876544433333322    3456778899999997654221            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC----------
Q 014461          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL----------  286 (424)
Q Consensus       217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----------  286 (424)
                      .......+.+++++|.++..... .....+..........+.|+++++||.|+.... ......+.+...          
T Consensus        75 ~~~~~~~~~~~~~~d~~d~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~-~~~~i~~~~~~~~~~~~~~~~~  152 (186)
T d1f6ba_          75 KNYLPAINGIVFLVDCADHERLL-ESKEELDSLMTDETIANVPILILGNKIDRPEAI-SEERLREMFGLYGQTTGKGSVS  152 (186)
T ss_dssp             GGGGGGCSEEEEEEETTCGGGHH-HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC-CHHHHHHHHTCTTTCCCSSCCC
T ss_pred             hhhhcccceeeeeeeccCccchH-HHHHHHHHhhcccccCCCceEEEEeccCccccC-CHHHHHHHHhhcccchhhhhhh
Confidence            13456679999999986532221 112122222222233458999999999997642 222222222110          


Q ss_pred             -----CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          287 -----PGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       287 -----~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                           .....+++|||++|+|++|+++||.+++
T Consensus       153 ~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         153 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                 0112589999999999999999999875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.2e-16  Score=147.31  Aligned_cols=116  Identities=23%  Similarity=0.311  Sum_probs=84.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC-----Ccceee------------cCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG-----TKVAAV------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~-----~~~~~~------------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~  200 (424)
                      +..+|+++|+.++|||||+.+|+.     .+...+            ....+.|.......+.+.+.+++++||||+.++
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            346899999999999999999962     111111            111233444445567889999999999999876


Q ss_pred             CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      ..            .+...+..+|.+|+|+|+.++.......+++.+.+.      +.|.++++||+|...
T Consensus        85 ~~------------e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~------~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          85 TI------------EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY------KVPRIAFANKMDKTG  137 (276)
T ss_dssp             ST------------THHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT------TCCEEEEEECTTSTT
T ss_pred             HH------------HHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHc------CCCEEEEEecccccc
Confidence            32            222345667999999999998887777777777765      389999999999865

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.68  E-value=2.5e-16  Score=141.45  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=100.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc--c--------eeecCC----------------------CCceeeEEEEEEec
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--V--------AAVSRK----------------------TNTTTHEVLGVMTK  184 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~--------~~~~~~----------------------~~tt~~~~~~~~~~  184 (424)
                      ...++|+++|+.++|||||+++|+...  +        ...+..                      .+.|.......+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            356789999999999999999996311  0        001111                      11222222333556


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (424)
Q Consensus       185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~  264 (424)
                      .+..+.++||||+..+            +......+..+|++++|+|+..+...+....+..+..++.     ..+|+++
T Consensus        87 ~~~~~~iiD~PGH~df------------v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv-----~~iiv~v  149 (222)
T d1zunb3          87 AKRKFIIADTPGHEQY------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGI-----KHIVVAI  149 (222)
T ss_dssp             SSEEEEEEECCCSGGG------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTC-----CEEEEEE
T ss_pred             cceEEEEEeccchhhh------------hhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCC-----CEEEEEE
Confidence            6788999999998754            4445556778999999999998887776666666666541     3488999


Q ss_pred             ecCCCCCChhh-HHH---HHHHHhcCCCCC----eEEEEecCCCcChHH
Q 014461          265 NKVDLVTKKKD-LLK---VAEQFKHLPGYE----RIFMTSGLKGAGLKA  305 (424)
Q Consensus       265 NK~Dl~~~~~~-~~~---~~~~~~~~~~~~----~~~~iSA~~g~gi~~  305 (424)
                      ||+|+....+. ...   .+..+.+..++.    +++|+||++|.|+.+
T Consensus       150 NK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         150 NKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             ECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             EccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            99999874322 222   223333344442    579999999999854

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.65  E-value=9.3e-16  Score=141.07  Aligned_cols=134  Identities=21%  Similarity=0.285  Sum_probs=98.0

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~  214 (424)
                      .....++|+++|.+|||||||+|+|+|...+.++..+++|+..........+.++.++||||+.+...  ........+.
T Consensus        28 ~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~--~~~~~~~~i~  105 (257)
T d1h65a_          28 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY--INDMALNIIK  105 (257)
T ss_dssp             TTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcc--hHHHHHHHHH
Confidence            34567999999999999999999999999988899899999888888888999999999999976432  1122212222


Q ss_pred             HHHhhcccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          215 SAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       215 ~~~~~~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      . .......|+++||++.+. .++..+....+.+........ ..++++|+||+|....
T Consensus       106 ~-~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~-~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         106 S-FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI-WNKAIVALTHAQFSPP  162 (257)
T ss_dssp             H-HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECCSCCCG
T ss_pred             H-HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh-hhCEEEEEECcccCCc
Confidence            2 223456799999998864 345555566666665432111 1468999999998764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.1e-15  Score=147.37  Aligned_cols=165  Identities=18%  Similarity=0.208  Sum_probs=106.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcc----eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV----AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~----~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~  212 (424)
                      ..+++|+++|.||||||||+|+|+|...    .......+||++.... ...++..+.+|||||+.....  ..+   ..
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~-~~~~~~~~~l~DtPG~~~~~~--~~~---~~  127 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-KHPNIPNVVFWDLPGIGSTNF--PPD---TY  127 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-ECSSCTTEEEEECCCGGGSSC--CHH---HH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee-eccCCCeEEEEeCCCcccccc--cHH---HH
Confidence            4579999999999999999999998543    2233344566655443 334566799999999975431  111   11


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----------hh-hHHHH-
Q 014461          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----------KK-DLLKV-  279 (424)
Q Consensus       213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-----------~~-~~~~~-  279 (424)
                      .  .......+|+++++.|.  .++..+..+...+.+.+      +|+++|+||+|....           .+ .+... 
T Consensus       128 ~--~~~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~------k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir  197 (400)
T d1tq4a_         128 L--EKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMMK------KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR  197 (400)
T ss_dssp             H--HHTTGGGCSEEEEEESS--CCCHHHHHHHHHHHHTT------CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred             H--HHhhhhcceEEEEecCC--CCCHHHHHHHHHHHHcC------CCEEEEEeCcccccchhhhcccccccHHHHHHHHH
Confidence            1  12245678988888775  56666667777777653      789999999996311           11 11111 


Q ss_pred             ---HHHHhcC-CCCCeEEEEecCC--CcChHHHHHHHHHhccCC
Q 014461          280 ---AEQFKHL-PGYERIFMTSGLK--GAGLKALTQYLMEQAVQR  317 (424)
Q Consensus       280 ---~~~~~~~-~~~~~~~~iSA~~--g~gi~~L~~~i~~~l~~~  317 (424)
                         ...+... ...+++|.+|+..  ..|+++|.+.+.+.++..
T Consensus       198 ~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         198 LNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence               2222222 2344689999754  568999999999998753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=1.8e-15  Score=139.03  Aligned_cols=113  Identities=18%  Similarity=0.267  Sum_probs=84.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCc-----ceeec------C------CCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTK-----VAAVS------R------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~-----~~~~~------~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~  202 (424)
                      .+|+++|+.++|||||+.+|+...     ...+.      +      ..+.|.......+.+.+.+++++||||+.++  
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF--   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF--   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG--
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhh--
Confidence            579999999999999999996211     11111      1      1234555555567789999999999998765  


Q ss_pred             CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (424)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~  270 (424)
                                ...+...+..+|.+|+|+|+..+.......+.+.+.+.+      .|.++++||+|..
T Consensus        81 ----------~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~------~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 ----------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLG------LPRMVVVTKLDKG  132 (267)
T ss_dssp             ----------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT------CCEEEEEECGGGC
T ss_pred             ----------hhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcc------ccccccccccccc
Confidence                      334445667789999999999888887777777777654      7899999999975

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.1e-15  Score=133.96  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (424)
                      +|+++|++|||||||+|+|++.++.......+++.... ......+..+.+||+||....           ........+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~d~~g~~~~-----------~~~~~~~~~   69 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIY-KVNNNRGNSLTLIDLPGHESL-----------RFQLLDRFK   69 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEE-ECSSTTCCEEEEEECCCCHHH-----------HHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEE-EEeeeeeeeeeeeeccccccc-----------cchhhhhhh
Confidence            69999999999999999999887754433222222211 111234567999999997532           111222345


Q ss_pred             ccccEEEEEEeCCCCCCCch---HHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          221 NLFEVLMVVFDVHRHLTSPD---SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       221 ~~aD~vl~VvD~~~~~~~~~---~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ..+|.+++|+|+++......   ..+.+++..... .....|+++|+||+|+...
T Consensus        70 ~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~-~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          70 SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA-LKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-STTCCEEEEEEECTTSTTC
T ss_pred             hhccccceEEEcccccccHHHHHHHHHHHHHhHHH-hhcCCcEEEEEECcccCCC
Confidence            78899999999975321111   122233332221 1234789999999999764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=2.9e-15  Score=132.83  Aligned_cols=121  Identities=15%  Similarity=0.236  Sum_probs=80.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .++|+++|+||||||||+|+|++.++.     +++|+......+..++..+.+|||||.....     ...   ......
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~-----~~~---~~~~~~   69 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR-----YKL---SDYLKT   69 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGT-----HHH---HHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEEeCCeEEEEEecccccchh-----hHH---HHHHHH
Confidence            358999999999999999999987653     3455555556667788889999999986532     111   222223


Q ss_pred             hcccccEEEEEEeCCCCCCCchH---HHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461          219 AVNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~~~---~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~  272 (424)
                      ....++.+++++|+.........   .+.+++.........+.|+++|+||+|+...
T Consensus        70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            45667999999998643332221   1222222222223345899999999999764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=4.6e-15  Score=133.57  Aligned_cols=150  Identities=17%  Similarity=0.212  Sum_probs=90.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcc------------------------------eeecCCCCceeeEEEEEEecCCcc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKV------------------------------AAVSRKTNTTTHEVLGVMTKADTQ  188 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~~~  188 (424)
                      ..+|+++|+.++|||||+.+|+...-                              .......+.|.......+...+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            57999999999999999999863100                              001122234444444446678889


Q ss_pred             EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCcEE
Q 014461          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQKRV  261 (424)
Q Consensus       189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p~i  261 (424)
                      +.++||||+.++            .......+..+|++|+|+|+..+..       .+..+.+.....++     ..++|
T Consensus        83 i~iiDtPGH~df------------~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~-----~~~iI  145 (224)
T d1jnya3          83 FTIIDAPGHRDF------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-----LDQLI  145 (224)
T ss_dssp             EEECCCSSSTTH------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-----CTTCE
T ss_pred             eEEeeCCCcHHH------------HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC-----CCceE
Confidence            999999998754            4445566788999999999987532       12222223333332     24588


Q ss_pred             EEEecCCCCCCh---hhHH---HHHHHHhcCC----CCCeEEEEecCCCcChHH
Q 014461          262 LCMNKVDLVTKK---KDLL---KVAEQFKHLP----GYERIFMTSGLKGAGLKA  305 (424)
Q Consensus       262 lV~NK~Dl~~~~---~~~~---~~~~~~~~~~----~~~~~~~iSA~~g~gi~~  305 (424)
                      +++||+|+....   ....   ..+..+....    ....++|+||.+|.|+.+
T Consensus       146 v~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         146 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             EEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            999999997531   1122   2222222222    223689999999999854

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=4.3e-15  Score=135.38  Aligned_cols=165  Identities=18%  Similarity=0.266  Sum_probs=92.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC---Ccc---------------------e------eecCCCCceeeEEEEEEecCCc
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG---TKV---------------------A------AVSRKTNTTTHEVLGVMTKADT  187 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~---~~~---------------------~------~~~~~~~tt~~~~~~~~~~~~~  187 (424)
                      ..++|+++|+.++|||||+.+|+.   .-.                     +      ......+.|.......+...+.
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            457899999999999999999952   100                     0      0111112233322333556778


Q ss_pred             cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-------CCchHHHHHHHHHhccCCCCCCcE
Q 014461          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKR  260 (424)
Q Consensus       188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~~~~~l~~~~~~~~~~~p~  260 (424)
                      .+.++||||+..+            .......+..+|++++|+|+..+.       ..+....+..+..++     -.++
T Consensus       103 ~i~~iDtPGH~df------------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~-----i~~i  165 (245)
T d1r5ba3         103 RFSLLDAPGHKGY------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG-----INHL  165 (245)
T ss_dssp             EEEECCCCC-----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT-----CSSE
T ss_pred             eeeeecccccccc------------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC-----CCeE
Confidence            8999999998765            333445567889999999997653       112334444455443     1247


Q ss_pred             EEEEecCCCCCCh---hhHHHHHHHH----hcCCCC-----CeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCC
Q 014461          261 VLCMNKVDLVTKK---KDLLKVAEQF----KHLPGY-----ERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPL  324 (424)
Q Consensus       261 ilV~NK~Dl~~~~---~~~~~~~~~~----~~~~~~-----~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~  324 (424)
                      ++++||+|+....   ....+..+++    .+..++     .+++|+||++|.||.++++..     ..||+.++.
T Consensus       166 iv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~-----~~~wy~G~t  236 (245)
T d1r5ba3         166 VVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS-----VCPWYQGPS  236 (245)
T ss_dssp             EEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTT-----TCSSCCSCC
T ss_pred             EEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhcc-----CCCCCCCch
Confidence            8999999997431   2222222222    121122     258999999999998866532     246765544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=4e-15  Score=134.92  Aligned_cols=150  Identities=17%  Similarity=0.230  Sum_probs=97.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC---Cc---------------------------ceeecCCCCceeeEEEEEEecCCcc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG---TK---------------------------VAAVSRKTNTTTHEVLGVMTKADTQ  188 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~---~~---------------------------~~~~~~~~~tt~~~~~~~~~~~~~~  188 (424)
                      .++|+++|+.++|||||+.+|+.   .-                           ........+.|.+.....+.+.+.+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            47999999999999999999862   10                           0001122345555555557788899


Q ss_pred             EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-------CCchHHHHHHHHHhccCCCCCCcEE
Q 014461          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKRV  261 (424)
Q Consensus       189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~~~~~l~~~~~~~~~~~p~i  261 (424)
                      +.|+||||+.++            .......+..+|++|+|+|+..+.       ..+....+..+..++.     .++|
T Consensus        86 i~iiDtPGH~df------------~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv-----~~ii  148 (239)
T d1f60a3          86 VTVIDAPGHRDF------------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV-----RQLI  148 (239)
T ss_dssp             EEEEECCCCTTH------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC-----CEEE
T ss_pred             EEEEECCCcHHH------------HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCC-----CeEE
Confidence            999999998754            455566788899999999997541       1223333444444431     3478


Q ss_pred             EEEecCCCCCChh-hHHHHHH---HHhcCCCC----CeEEEEecCCCcChHH
Q 014461          262 LCMNKVDLVTKKK-DLLKVAE---QFKHLPGY----ERIFMTSGLKGAGLKA  305 (424)
Q Consensus       262 lV~NK~Dl~~~~~-~~~~~~~---~~~~~~~~----~~~~~iSA~~g~gi~~  305 (424)
                      +++||+|+.+... ...+..+   .+....++    ..++++||..|.|+-+
T Consensus       149 v~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         149 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            8999999986432 2222222   22222122    3579999999999754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.7e-14  Score=126.11  Aligned_cols=156  Identities=16%  Similarity=0.116  Sum_probs=98.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      ..||+++|..|||||||+++|....++.+    +    .....+......+.+|||.|.......            ...
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~----~----~~~~~~~~~~~~~~i~D~~Gq~~~~~~------------~~~   61 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT----G----IVETHFTFKDLHFKMFDVGGQRSERKK------------WIH   61 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC----S----EEEEEEEETTEEEEEEEECCSGGGGGG------------GGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc----c----EEEEEEEeeeeeeeeeccccccccccc------------hhh
Confidence            57899999999999999999986554321    1    122335667888999999998754211            113


Q ss_pred             hcccccEEEEEEeCCCCCCCc--------h-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh----------------
Q 014461          219 AVNLFEVLMVVFDVHRHLTSP--------D-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------------  273 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~--------~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----------------  273 (424)
                      .+..++++++|+|.++.....        . .....+...+........|+++++||+|+...+                
T Consensus        62 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~  141 (195)
T d1svsa1          62 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS  141 (195)
T ss_dssp             GCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSC
T ss_pred             cccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCc
Confidence            467899999999986432221        1 122223333333334457999999999863210                


Q ss_pred             hhH----HHHHHHHhcCCC-----CCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          274 KDL----LKVAEQFKHLPG-----YERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       274 ~~~----~~~~~~~~~~~~-----~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ...    ......+.+...     ...++++||++|.||+++|+.+.+.+
T Consensus       142 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         142 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             SSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence            011    112223332211     11366899999999999999987754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.6e-15  Score=130.31  Aligned_cols=160  Identities=13%  Similarity=0.092  Sum_probs=100.2

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +.+||+++|.+|||||||++++....+..   .  .|.......+......+.+|||+|.......            ..
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~~---~--pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~------------~~   63 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGSG---V--PTTGIIEYPFDLQSVIFRMVDVGGQRSERRK------------WI   63 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSSC---C--CCCSCEEEEEECSSCEEEEEECCCSTTGGGG------------GG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCCC---C--ceeeEEEEEEeccceeeeecccccccccccc------------cc
Confidence            35799999999999999999998765531   1  2222223335567788999999998654211            12


Q ss_pred             hhcccccEEEEEEeCCCCCCC---------chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--------------
Q 014461          218 SAVNLFEVLMVVFDVHRHLTS---------PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--------------  274 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~~---------~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--------------  274 (424)
                      ..+..++.+++++|.++....         .......|...+......+.|+++++||+|+...+.              
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~  143 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG  143 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCS
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccC
Confidence            346788999999998653211         111222333333333344689999999999743110              


Q ss_pred             ---hHH---H-HHHHHhcCCCC----CeEEEEecCCCcChHHHHHHHHHhc
Q 014461          275 ---DLL---K-VAEQFKHLPGY----ERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       275 ---~~~---~-~~~~~~~~~~~----~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                         +..   . ....+.+....    ..++++||++|.||+++|+.|.+.+
T Consensus       144 ~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         144 PQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence               000   1 11222222111    1367899999999999999987665

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.7e-14  Score=123.93  Aligned_cols=158  Identities=13%  Similarity=0.156  Sum_probs=93.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .+||+++|.+|||||||++++..   .  .. ...|.......+...+..+.+||++|+......            ...
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f---~--~~-~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~------------~~~   63 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI---I--HG-QDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKR------------WFE   63 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH---H--HS-CCCCSSEEEEEEEETTEEEEEEEECC-------------------CTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc---C--CC-CCCeeeeEEEEEeeeeeeeeeecccceeeeccc------------ccc
Confidence            57999999999999999999932   1  11 112333333446678889999999998654321            123


Q ss_pred             hcccccEEEEEEeCCCCCCCc--------hHHHHHHHHH-hccCCCCCCcEEEEEecCCCCCCh----------------
Q 014461          219 AVNLFEVLMVVFDVHRHLTSP--------DSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKK----------------  273 (424)
Q Consensus       219 ~~~~aD~vl~VvD~~~~~~~~--------~~~~~~~l~~-~~~~~~~~~p~ilV~NK~Dl~~~~----------------  273 (424)
                      ....++++++++|.++.....        ......++.. +......+.|+++++||+|+....                
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~  143 (200)
T d1zcba2          64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD  143 (200)
T ss_dssp             SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred             cccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCC
Confidence            456789999999987643321        1122233332 222223468999999999974210                


Q ss_pred             -hhHHH----HHHHHhcCCC---C--CeEEEEecCCCcChHHHHHHHHHhc
Q 014461          274 -KDLLK----VAEQFKHLPG---Y--ERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       274 -~~~~~----~~~~~~~~~~---~--~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                       .+...    ..+.+.....   .  .-++.+||+++.||+++|+.+.+.+
T Consensus       144 ~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         144 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence             11111    1222322211   1  1245699999999999999887654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=2.8e-14  Score=134.96  Aligned_cols=156  Identities=15%  Similarity=0.238  Sum_probs=90.9

Q ss_pred             hhhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCceeeE--EEE-----------------------E
Q 014461          133 KEEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE--VLG-----------------------V  181 (424)
Q Consensus       133 ~~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~--~~~-----------------------~  181 (424)
                      .+...+..+|+|.|+||||||||+++|.      |.+++.+...|.++...  ..+                       .
T Consensus        48 ~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~  127 (327)
T d2p67a1          48 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGH  127 (327)
T ss_dssp             GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC---
T ss_pred             hhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccc
Confidence            3556679999999999999999999997      45555444444332210  000                       0


Q ss_pred             --------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHH
Q 014461          182 --------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI  247 (424)
Q Consensus       182 --------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l  247 (424)
                                    +...+..++++.|.|....               .......+|.+++|++...+  +........+
T Consensus       128 lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~---------------e~~i~~~aD~~l~v~~P~~G--d~iq~~k~gi  190 (327)
T d2p67a1         128 LGGASQRARELMLLCEAAGYDVVIVETVGVGQS---------------ETEVARMVDCFISLQIAGGG--DDLQGIKKGL  190 (327)
T ss_dssp             --CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH---------------HHHHHTTCSEEEEEECC--------CCCCHHH
T ss_pred             cccchhhhhHHHHHHHhcCCCeEEEeecccccc---------------chhhhhccceEEEEecCCCc--hhhhhhchhh
Confidence                          0112345677777776431               01234567999999887432  2111122223


Q ss_pred             HHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh-------c--CCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-------H--LPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       248 ~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-------~--~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      -+.        +-++|+||+|+.... ........+.       .  ....++++.|||++|.|+++|++.|.++.
T Consensus       191 ~e~--------aDi~VvNKaD~~~~~-~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         191 MEV--------ADLIVINKDDGDNHT-NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHH--------CSEEEECCCCTTCHH-HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             hcc--------ccEEEEEeecccchH-HHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            332        358999999987632 1211112211       1  12234799999999999999999998765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=6.8e-16  Score=137.31  Aligned_cols=132  Identities=18%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             HhhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCccChhhHHHHHH--hcCCeEEEeec-cccccchhhhHHHH
Q 014461           31 YSAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQEPTWDEKYR--ERTDRIVFGEE-AQKGKLRIFQEEEE  106 (424)
Q Consensus        31 ~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~~~~~~~~~~~--~~~~~i~f~~~-~~~~~~~l~~~~~~  106 (424)
                      +..+|.++.  .. +.++++.++++.+|++. .||+||.+++..+.|...+.  ..++.+++.++ ++.|...+      
T Consensus        19 s~~~P~~~~--~~-ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L------   89 (225)
T d1u0la2          19 TVKMPETST--YI-IDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEEL------   89 (225)
T ss_dssp             CSSTTCCCH--HH-HHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH------
T ss_pred             eCCCCCCCH--HH-HHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchhHhhH------
Confidence            334565555  55 56788888899999988 99999998877766665544  45678888888 78787666      


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcce---ee----cCCCCceeeEEE
Q 014461          107 ERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA---AV----SRKTNTTTHEVL  179 (424)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~---~~----~~~~~tt~~~~~  179 (424)
                                  +..+               ++...+++|++|||||||+|+|.+....   .+    ....+||+....
T Consensus        90 ------------~~~l---------------~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l  142 (225)
T d1u0la2          90 ------------KEYL---------------KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL  142 (225)
T ss_dssp             ------------HHHH---------------SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE
T ss_pred             ------------HHHh---------------cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeE
Confidence                        1111               3456899999999999999999975432   22    233457777665


Q ss_pred             EEEecCCccEEEEeCCCcccCC
Q 014461          180 GVMTKADTQICIFDTPGLMLNK  201 (424)
Q Consensus       180 ~~~~~~~~~i~l~DtpG~~~~~  201 (424)
                      ..+..++   .++||||+....
T Consensus       143 ~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2         143 LKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EECTTSC---EEESSCSSTTCC
T ss_pred             EEECCCc---EEEeCCcccccc
Confidence            5444344   899999998664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.46  E-value=1.6e-15  Score=135.23  Aligned_cols=173  Identities=17%  Similarity=0.130  Sum_probs=106.7

Q ss_pred             hhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCccC----hhhHHHHHHhcCCeEEEeec-cccccchhhhHHH
Q 014461           32 SAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQ----EPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEE  105 (424)
Q Consensus        32 ~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~~----~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~  105 (424)
                      +.+|.++.  .. +.++++.++++.++++. .||+||.+.+.    .+.|...|...|+.+++.++ ++.|...+     
T Consensus        20 ~~~P~~~~--~~-idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L-----   91 (231)
T d1t9ha2          20 AVQPSFST--AL-LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI-----   91 (231)
T ss_dssp             STTTTCCH--HH-HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTT-----
T ss_pred             CCCCCCCH--HH-HHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCChhHHHHH-----
Confidence            34555554  55 56788888888888888 99999987654    34567778889999999999 88888877     


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcce---eecCC----CCceeeEE
Q 014461          106 EERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA---AVSRK----TNTTTHEV  178 (424)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~---~~~~~----~~tt~~~~  178 (424)
                                                  ....+....+++|++|||||||+|+|.+....   .++..    -+||+...
T Consensus        92 ----------------------------~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~  143 (231)
T d1t9ha2          92 ----------------------------IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE  143 (231)
T ss_dssp             ----------------------------GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC
T ss_pred             ----------------------------HHhhccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEE
Confidence                                        11123456789999999999999999986432   23322    24666554


Q ss_pred             EEEEecCCccEEEEeCCCcccCCCC-CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH
Q 014461          179 LGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (424)
Q Consensus       179 ~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~  249 (424)
                      ...  .++  -.++||||+..+... .....+...+.........|-.    -|++ +..++...+.+.++.
T Consensus       144 l~~--~~g--g~iiDTPG~r~~~l~~~~~~~l~~~F~ei~~~~~~CkF----~dC~-H~~EpgCaV~~av~~  206 (231)
T d1t9ha2         144 LIH--TSG--GLVADTPGFSSLEFTDIEEEELGYTFPDIREKSSSCKF----RGCL-HLKEPKCAVKQAVED  206 (231)
T ss_dssp             EEE--ETT--EEEESSCSCSSCCCTTCCHHHHGGGSHHHHHHGGGCSS----TTCC-SSSCSSCHHHHHHHH
T ss_pred             EEe--cCC--CEEEECCccccccccccCcccchhhhhhHHHHhCCCCC----CCCC-CCCCCCchHHHHHHc
Confidence            432  233  278999999876532 2333344344443333333211    1332 445566677666664

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.46  E-value=4.6e-14  Score=133.29  Aligned_cols=192  Identities=18%  Similarity=0.226  Sum_probs=109.0

Q ss_pred             hhhcccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCcee-----------------eEEEEE--------
Q 014461          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-----------------HEVLGV--------  181 (424)
Q Consensus       133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~-----------------~~~~~~--------  181 (424)
                      .+...+..+|+|.|+||||||||+++|..      .+++.+...|.++.                 +....+        
T Consensus        45 ~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~  124 (323)
T d2qm8a1          45 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT  124 (323)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred             hhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccc
Confidence            45566889999999999999999999873      33333332222211                 000000        


Q ss_pred             --------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHH
Q 014461          182 --------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI  247 (424)
Q Consensus       182 --------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l  247 (424)
                                    +...+..+.|+.|.|.....           .    .....+|..++|+....+  +.......-+
T Consensus       125 ~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e-----------~----~~~~~~D~~v~v~~p~~G--D~iQ~~k~gi  187 (323)
T d2qm8a1         125 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE-----------T----AVADLTDFFLVLMLPGAG--DELQGIKKGI  187 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----------H----HHHTTSSEEEEEECSCC--------CCTTH
T ss_pred             ccchhHHHHHHHHhhccCCCCeEEEeehhhhhhh-----------h----hhhcccceEEEEeeccch--hhhhhhhhhH
Confidence                          12245678899999876431           0    123457999999988532  2111111112


Q ss_pred             HHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---------CCCCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461          248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---------LPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP  318 (424)
Q Consensus       248 ~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~  318 (424)
                      -+        .+-++|+||+|+.+...........+..         ....++++.+||++|.|+++|+++|.++.....
T Consensus       188 lE--------~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~  259 (323)
T d2qm8a1         188 FE--------LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLT  259 (323)
T ss_dssp             HH--------HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hh--------hhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            22        2359999999988764332222222211         113357999999999999999999987653211


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHhhcCc
Q 014461          319 WSEDPLTMSEEVMKNISLEVVRERLLDHVHQ  349 (424)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~  349 (424)
                      ....-.....+....+..+.+++.+.+.+.+
T Consensus       260 ~~G~l~~rR~~q~~~w~~~~V~e~L~~~~~~  290 (323)
T d2qm8a1         260 ATGEIAGKRREQDVKWMWALVHERLHQRLVG  290 (323)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0000000111233444566777777776654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.38  E-value=4.3e-13  Score=121.26  Aligned_cols=119  Identities=14%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+.++|+||+..+..      ....... +......+.+++++|+......... ....+...........|.++|+||
T Consensus        95 ~~~~~id~~g~~~~~~------~~~~~~~-~~~~~~~~~~v~vvd~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ivvinK  166 (244)
T d1yrba1          95 NDYVLIDTPGQMETFL------FHEFGVR-LMENLPYPLVVYISDPEILKKPNDY-CFVRFFALLIDLRLGATTIPALNK  166 (244)
T ss_dssp             CSEEEEECCSSHHHHH------HSHHHHH-HHHTSSSCEEEEEECGGGCCSHHHH-HHHHHHHHHHHHHHTSCEEEEECC
T ss_pred             cceeeeccccchhHHH------HHHHHHH-HHhhccCceEEEEeccccccCchhH-hhHHHHHHHHHHHhCCCceeeeec
Confidence            4589999999875411      0011111 1122345789999998644332221 111111100000013689999999


Q ss_pred             CCCCCChhhHHHHH----------H------------------HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461          267 VDLVTKKKDLLKVA----------E------------------QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       267 ~Dl~~~~~~~~~~~----------~------------------~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      +|+..... .....          .                  ...+..+..+++++||++|+|+++|++.|.+..
T Consensus       167 ~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         167 VDLLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GGGCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            99987421 11100          0                  011223344689999999999999999998763

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=6e-13  Score=124.58  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=72.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCccc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLML  199 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~  199 (424)
                      ...++|++||.||||||||+|+|++...+.++++|+||.++..+++...+                 .++.++|.||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            35689999999999999999999988777789999999988777765443                 3588999999875


Q ss_pred             CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~  234 (424)
                      ..+.     ....-...+..++.+|++++|+|+..
T Consensus        88 gA~~-----g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GAST-----GVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCS-----SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccc-----ccccHHHHHHHhhccceeEEEEeccC
Confidence            4321     01112345667889999999999864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=2.6e-12  Score=121.51  Aligned_cols=115  Identities=19%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEe----------------cCC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMT----------------KAD  186 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~----------------~~~  186 (424)
                      ...+|+++|+.++|||||+.+|+...-.               ......+.|.......+.                ..+
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            3457999999999999999999721100               000111222222111121                123


Q ss_pred             ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (424)
Q Consensus       187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK  266 (424)
                      ..+.++||||+.++.            ..+...++.+|++++|+|+..+.......+++...+.      +.|+++++||
T Consensus        96 ~~inliDtPGh~dF~------------~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~------~~p~i~viNK  157 (341)
T d1n0ua2          96 FLINLIDSPGHVDFS------------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE------RIKPVVVINK  157 (341)
T ss_dssp             EEEEEECCCCCCSSC------------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCEEEEEEEC
T ss_pred             eEEEEEcCCCcHHHH------------HHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc------CCCeEEEEEC
Confidence            458999999998762            2233445668999999999988887777776666554      3789999999


Q ss_pred             CCCC
Q 014461          267 VDLV  270 (424)
Q Consensus       267 ~Dl~  270 (424)
                      +|..
T Consensus       158 iDr~  161 (341)
T d1n0ua2         158 VDRA  161 (341)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9964

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=3.5e-12  Score=114.09  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=74.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      +..||+++|.+|||||||++++....+.   +    |.......+..++..+.+||++|........            .
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~---p----TiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w------------~   65 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV---L----TSGIFETKFQVDKVNFHMFDVGGQRDERRKW------------I   65 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC---C----CCSCEEEEEEETTEEEEEEECCCSTTTTTGG------------G
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC---C----CCCeEEEEEEECcEEEEEEecCccceeccch------------h
Confidence            3689999999999999999999654332   1    2222223355678899999999987543211            1


Q ss_pred             hhcccccEEEEEEeCCCCCC--------CchHHHHHHHHH-hccCCCCCCcEEEEEecCCCCC
Q 014461          218 SAVNLFEVLMVVFDVHRHLT--------SPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVT  271 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~~~~~--------~~~~~~~~~l~~-~~~~~~~~~p~ilV~NK~Dl~~  271 (424)
                      .....++++++|+|.+....        .........+.. +......+.|+++++||+|+..
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            34577899999999864211        111122222222 2222334589999999999865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=2.8e-12  Score=118.78  Aligned_cols=89  Identities=21%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcccCC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNK  201 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~  201 (424)
                      +++|++||.||||||||+|+|++.+. .++++|.||..+..+++...+                 .++.++|.||.....
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            46899999999999999999998775 478999999888877765543                 247899999987532


Q ss_pred             CCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~  233 (424)
                      +     .....-...+..++.+|++++|+|+.
T Consensus        81 ~-----~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 S-----KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             H-----HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             c-----cCCCccHHHHHHHHhccceEEEeecc
Confidence            1     11111223456788999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=6.4e-12  Score=118.69  Aligned_cols=89  Identities=21%  Similarity=0.296  Sum_probs=48.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe------------------------cCCccEEEEeCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT------------------------KADTQICIFDTP  195 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~------------------------~~~~~i~l~Dtp  195 (424)
                      ++|+++|.||||||||+|+|++.+. .++++|+||.++..++..                        ....++.++|+|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~-~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCC-chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            4799999999999999999999865 589999999877655432                        011358999999


Q ss_pred             CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (424)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~  234 (424)
                      |+.....     .........+..++.+|++++|+|+..
T Consensus        80 Gli~ga~-----~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          80 GLVPGAH-----EGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------------CCCSSTTCSEEEEEEETTC
T ss_pred             Ccccchh-----cccchHHHHHHhhccceEEEEEecccc
Confidence            9875421     112334455667889999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=3.8e-09  Score=98.19  Aligned_cols=135  Identities=19%  Similarity=0.302  Sum_probs=78.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE-------------------------------------
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG-------------------------------------  180 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~-------------------------------------  180 (424)
                      ..++|+|+|..++|||||+|+|+|..+..++..+.|...+...                                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            3568999999999999999999998865444444321111100                                     


Q ss_pred             --------------EEecCCccEEEEeCCCcccCCCCCChhhhhhH-HHHHHhhccccc-EEEEEEeCCCCCCCchHHHH
Q 014461          181 --------------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVR-VESAWSAVNLFE-VLMVVFDVHRHLTSPDSRVI  244 (424)
Q Consensus       181 --------------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~~~aD-~vl~VvD~~~~~~~~~~~~~  244 (424)
                                    .....-..+.++||||+............... ...+..++..++ ++++|.++...+...  ...
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~--~~~  182 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS--DAL  182 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGC--HHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhh--HHH
Confidence                          00112235889999999765332221111111 222333444455 566777776544332  344


Q ss_pred             HHHHHhccCCCCCCcEEEEEecCCCCCChhhHH
Q 014461          245 RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL  277 (424)
Q Consensus       245 ~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~  277 (424)
                      .+++.+...   ..++++|+||+|.........
T Consensus       183 ~~~~~~~~~---~~r~i~Vltk~D~~~~~~~~~  212 (299)
T d2akab1         183 KIAKEVDPQ---GQRTIGVITKLDLMDEGTDAR  212 (299)
T ss_dssp             HHHHHHCTT---CSSEEEEEECGGGSCTTCCCH
T ss_pred             HHHHHhCcC---CCceeeEEeccccccchhhHH
Confidence            556655432   256999999999987544333

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.95  E-value=3.1e-09  Score=99.13  Aligned_cols=135  Identities=16%  Similarity=0.276  Sum_probs=71.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE--------------------------------------
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG--------------------------------------  180 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~--------------------------------------  180 (424)
                      .++|+|+|..++|||||+|+|+|..+..++..+.|.......                                      
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            468999999999999999999997764444333221111100                                      


Q ss_pred             ---------------------EEecCCccEEEEeCCCcccCCCCCChh-hhhhHHHHHHhhcccccEEE-EEEeCCCCCC
Q 014461          181 ---------------------VMTKADTQICIFDTPGLMLNKSGYSHK-DVKVRVESAWSAVNLFEVLM-VVFDVHRHLT  237 (424)
Q Consensus       181 ---------------------~~~~~~~~i~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~~~~~aD~vl-~VvD~~~~~~  237 (424)
                                           .....-..+.++||||+......-... ........+..++..++.++ +|.++...+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                                 011122458899999997543211100 11111222334456677644 4556654433


Q ss_pred             CchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461          238 SPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (424)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~  278 (424)
                      ...  ...+++.+...   ..++++|+||+|......+...
T Consensus       184 ~~~--~~~~~~~~~~~---~~r~i~Vitk~D~~~~~~~~~~  219 (306)
T d1jwyb_         184 NSD--ALQLAKEVDPE---GKRTIGVITKLDLMDKGTDAME  219 (306)
T ss_dssp             TCS--HHHHHHHHCSS---CSSEEEEEECTTSSCSSCCCHH
T ss_pred             ccH--HHHHHHHhCcC---CCeEEEEEeccccccchhHHHH
Confidence            332  34556665432   2469999999999875444433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=1.2e-06  Score=79.89  Aligned_cols=92  Identities=16%  Similarity=0.293  Sum_probs=69.7

Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (424)
Q Consensus       212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (424)
                      ..+.....+..+|+|++|+|+..+.+..+..+.++++        ++|.|+|+||+|+.+. .....+.+.|... ++ .
T Consensus         5 a~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--------~Kp~IlVlNK~DLv~~-~~~~~w~~~f~~~-~~-~   73 (273)
T d1puja_           5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--------NKPRIMLLNKADKADA-AVTQQWKEHFENQ-GI-R   73 (273)
T ss_dssp             HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--------SSCEEEEEECGGGSCH-HHHHHHHHHHHTT-TC-C
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--------CCCeEEEEECccCCch-HHHHHHHHHHHhc-CC-c
Confidence            3455566788999999999998888877766555442        3789999999999874 4556666667644 33 3


Q ss_pred             EEEEecCCCcChHHHHHHHHHhc
Q 014461          292 IFMTSGLKGAGLKALTQYLMEQA  314 (424)
Q Consensus       292 ~~~iSA~~g~gi~~L~~~i~~~l  314 (424)
                      ++++||.++.|..++.+.+.+.+
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~~l   96 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKEIL   96 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHH
T ss_pred             cceeecccCCCccccchhhhhhh
Confidence            78999999999988877776554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=1.2e-05  Score=69.84  Aligned_cols=150  Identities=16%  Similarity=0.209  Sum_probs=77.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCc-------------eeeEEEEE----------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT-------------TTHEVLGV----------------  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~t-------------t~~~~~~~----------------  181 (424)
                      .++..|+++|++||||||.+-.|..      .++..++-....             ..-.....                
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   88 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH   88 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHH
Confidence            4566789999999999999877752      222211111000             00000000                


Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc-----cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN-----LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~  256 (424)
                      ....+..++|+||||.....     ......+........     ..+-+++|+|++.+    ...+.+....+...   
T Consensus        89 ~~~~~~d~ilIDTaGr~~~d-----~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~----~~~~~~~~~~~~~~---  156 (213)
T d1vmaa2          89 ALARNKDVVIIDTAGRLHTK-----KNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG----QNGLVQAKIFKEAV---  156 (213)
T ss_dssp             HHHTTCSEEEEEECCCCSCH-----HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH----HHHHHHHHHHHHHS---
T ss_pred             HHHcCCCEEEEeccccccch-----HHHHHHHHHHHhhhhhccccccceeEEeeccccC----cchhhhhhhhcccc---
Confidence            00135679999999975431     121122222222222     14678999999532    22233333332211   


Q ss_pred             CCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       257 ~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                       .+-=++++|.|....-..+.......    +.+ +..++  +|+++++|
T Consensus       157 -~~~~lI~TKlDe~~~~G~~l~~~~~~----~~P-i~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         157 -NVTGIILTKLDGTAKGGITLAIAREL----GIP-IKFIG--VGEKAEDL  198 (213)
T ss_dssp             -CCCEEEEECGGGCSCTTHHHHHHHHH----CCC-EEEEE--CSSSGGGE
T ss_pred             -CCceEEEecccCCCcccHHHHHHHHH----CCC-EEEEe--CCCCcccC
Confidence             13457899999876444444444333    333 55565  67777653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.14  E-value=1.3e-05  Score=69.33  Aligned_cols=150  Identities=19%  Similarity=0.211  Sum_probs=76.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-------------eeEEEEE----------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------------THEVLGV----------------  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-------------~~~~~~~----------------  181 (424)
                      .++..++++|++||||||.+-.|..      .++..++.....-             .-.....                
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   83 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA   83 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence            3566789999999999999877752      2222211111000             0000000                


Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc-----ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~  256 (424)
                      ....+..++|+||||.....     ......+.......     ...+-+++|+|++.+.. ....+......++     
T Consensus        84 ~~~~~~d~ilIDTaGr~~~d-----~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~-----  152 (207)
T d1okkd2          84 MKARGYDLLFVDTAGRLHTK-----HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEAVG-----  152 (207)
T ss_dssp             HHHHTCSEEEECCCCCCTTC-----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHHHC-----
T ss_pred             HHHCCCCEEEcCccccchhh-----HHHHHHHHHHHHHhhhcccCCCceEEEEeecccCch-HHHHHHHhhhccC-----
Confidence            00125679999999975432     11111122222221     23467899999965321 1123333333332     


Q ss_pred             CCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       257 ~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                        +-=++++|.|....-..+.......    +.+ +..+|  +|++.++|
T Consensus       153 --~~~lI~TKlDet~~~G~~l~~~~~~----~~P-i~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         153 --LTGVIVTKLDGTAKGGVLIPIVRTL----KVP-IKFVG--VGEGPDDL  193 (207)
T ss_dssp             --CSEEEEECTTSSCCCTTHHHHHHHH----CCC-EEEEE--CSSSTTCE
T ss_pred             --CceEEEeccCCCCCccHHHHHHHHH----CCC-EEEEe--CCCChHhC
Confidence              2357899999876544555444433    333 55555  46655443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.3e-05  Score=67.85  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=76.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCC----------------ceeeEEE------EE-------E
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTN----------------TTTHEVL------GV-------M  182 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~----------------tt~~~~~------~~-------~  182 (424)
                      ++..|+++|++||||||.+-.|..      .++..++....                .......      ..       .
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a   87 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA   87 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHH
Confidence            456789999999999999988762      22221111110                0000000      00       0


Q ss_pred             ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc-----cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCC
Q 014461          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN-----LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK  257 (424)
Q Consensus       183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~  257 (424)
                      ...+..++|+||||.....     ......+......+.     ..+-+++|+|++.+    ...+.+....+...    
T Consensus        88 ~~~~~d~ilIDTaGr~~~d-----~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~----~~~~~~~~~~~~~~----  154 (211)
T d2qy9a2          88 KARNIDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG----QNAVSQAKLFHEAV----  154 (211)
T ss_dssp             HHTTCSEEEECCCCCGGGH-----HHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT----HHHHHHHHHHHHHS----
T ss_pred             HHcCCCEEEeccCCCcccc-----HHHHHHHHHHHHHHhhhcccCcceeeeehhcccC----cchHHHHhhhhhcc----
Confidence            0235678999999975321     111122222222222     24688999999642    22222222222211    


Q ss_pred             CcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHH
Q 014461          258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (424)
Q Consensus       258 ~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~  305 (424)
                      .+-=++++|.|-...-..+.......    +.+ +..+|  +|+++++
T Consensus       155 ~~~~lIlTKlDe~~~~G~~l~~~~~~----~~P-i~~i~--~Gq~v~D  195 (211)
T d2qy9a2         155 GLTGITLTKLDGTAKGGVIFSVADQF----GIP-IRYIG--VGERIED  195 (211)
T ss_dssp             CCCEEEEECCTTCTTTTHHHHHHHHH----CCC-EEEEE--CSSSGGG
T ss_pred             CCceEEEeecCCCCCccHHHHHHHHH----CCC-EEEEe--CCCCccc
Confidence            12457899999876544444444333    333 55565  6787765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.09  E-value=1.3e-05  Score=69.45  Aligned_cols=151  Identities=16%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-------------eeEEEEE----------------
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------------THEVLGV----------------  181 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-------------~~~~~~~----------------  181 (424)
                      ..+..|+++|++||||||.+-.|..      .++..++.....-             .-.....                
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~   89 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK   89 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence            3466789999999999999887752      2222111111000             0000000                


Q ss_pred             EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 014461          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (424)
Q Consensus       182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (424)
                      ....+..++|+||||......   .......+...... ...+-+++|+|++.+... ...+.......       .+-=
T Consensus        90 ~~~~~~d~IlIDTaGr~~~~~---~~~~~~el~~~~~~-~~~~~~~LVl~a~~~~~~-~~~~~~~~~~~-------~~~~  157 (211)
T d1j8yf2          90 FLSEKMEIIIVDTAGRHGYGE---EAALLEEMKNIYEA-IKPDEVTLVIDASIGQKA-YDLASKFNQAS-------KIGT  157 (211)
T ss_dssp             HHHTTCSEEEEECCCSCCTTC---HHHHHHHHHHHHHH-HCCSEEEEEEEGGGGGGH-HHHHHHHHHHC-------TTEE
T ss_pred             hhccCCceEEEecCCcCccch---hhHHHHHHHHHHhh-cCCceEEEEEecccCcch-HHHHhhhhccc-------Ccce
Confidence            012456899999999743210   00111122222222 235788999999643211 11222222221       1234


Q ss_pred             EEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461          262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (424)
Q Consensus       262 lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L  306 (424)
                      +++||.|....-..+....    ...+.+ +..+|  +|+++++|
T Consensus       158 lI~TKlDet~~~G~~l~~~----~~~~lP-i~~it--~Gq~v~DL  195 (211)
T d1j8yf2         158 IIITKMDGTAKGGGALSAV----AATGAT-IKFIG--TGEKIDEL  195 (211)
T ss_dssp             EEEECTTSCSCHHHHHHHH----HTTTCC-EEEEE--CSSSTTCE
T ss_pred             EEEecccCCCcccHHHHHH----HHHCcC-EEEEe--CCCCcccC
Confidence            7799999876544433332    233444 55555  58877653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=6.3e-05  Score=65.81  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +-.+|.|.-|||||||+|+++.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHH
T ss_pred             CEEEEeeCCCCCHHHHHHHHHh
Confidence            4568999999999999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=2.5e-05  Score=68.13  Aligned_cols=89  Identities=26%  Similarity=0.344  Sum_probs=55.6

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +.+.|.+++|+.+..+. .....+.++|-.....   ++|.++|+||+||.+. ++.......+.......+++.+||++
T Consensus         8 vANiD~vliV~s~~~P~-~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~-~~~~~~~~~~~~~~~~~~v~~vSa~~   82 (225)
T d1u0la2           8 VANVDQVILVVTVKMPE-TSTYIIDKFLVLAEKN---ELETVMVINKMDLYDE-DDLRKVRELEEIYSGLYPIVKTSAKT   82 (225)
T ss_dssp             EESCCEEEEEECSSTTC-CCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCH-HHHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             cccCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCH-HHHHHHHHhhcccccceeEEEecccc
Confidence            45679999999875432 2223333443322221   4789999999999874 33333322222111223489999999


Q ss_pred             CcChHHHHHHHHHh
Q 014461          300 GAGLKALTQYLMEQ  313 (424)
Q Consensus       300 g~gi~~L~~~i~~~  313 (424)
                      |.|+++|.+++...
T Consensus        83 ~~g~~~L~~~l~~k   96 (225)
T d1u0la2          83 GMGIEELKEYLKGK   96 (225)
T ss_dssp             CTTHHHHHHHHSSS
T ss_pred             chhHhhHHHHhcCC
Confidence            99999999988543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.62  E-value=0.00022  Score=61.38  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=66.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCce-------------eeEEEEEE----------------e
Q 014461          139 SVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-------------THEVLGVM----------------T  183 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt-------------~~~~~~~~----------------~  183 (424)
                      ..-++++|++||||||.+-.|.      |.++..++......             .-......                .
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~   89 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR   89 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHh
Confidence            3456889999999999999886      23322221111000             00001000                1


Q ss_pred             cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (424)
Q Consensus       184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV  263 (424)
                      ..+.+++++||+|.....     ......+.... .....+-+++|+|++.+    ... .+....+....   ..-=++
T Consensus        90 ~~~~d~vlIDTaGr~~~d-----~~~~~el~~~~-~~~~~~~~llv~~a~~~----~~~-~~~~~~f~~~~---~~~~~I  155 (207)
T d1ls1a2          90 LEARDLILVDTAGRLQID-----EPLMGELARLK-EVLGPDEVLLVLDAMTG----QEA-LSVARAFDEKV---GVTGLV  155 (207)
T ss_dssp             HHTCCEEEEECCCCSSCC-----HHHHHHHHHHH-HHHCCSEEEEEEEGGGT----HHH-HHHHHHHHHHT---CCCEEE
T ss_pred             hccCcceeecccccchhh-----hhhHHHHHHHH-hhcCCceEEEEeccccc----hhH-HHHHHHHHhhC---CCCeeE
Confidence            235578999999975432     11112222222 23456889999998643    111 12222222110   123478


Q ss_pred             EecCCCCCChhhHHHHHHH
Q 014461          264 MNKVDLVTKKKDLLKVAEQ  282 (424)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~  282 (424)
                      ++|.|....-..+......
T Consensus       156 ~TKlDe~~~~G~~l~~~~~  174 (207)
T d1ls1a2         156 LTKLDGDARGGAALSARHV  174 (207)
T ss_dssp             EECGGGCSSCHHHHHHHHH
T ss_pred             EeecCccccchHHHHHHHH
Confidence            9999986644444444333

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.57  E-value=0.00052  Score=56.82  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .||+++|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4799999999999999999986

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=7.8e-06  Score=70.53  Aligned_cols=83  Identities=10%  Similarity=-0.054  Sum_probs=43.5

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~  299 (424)
                      +...+..++++|+..........+.+..+...      .+++++.++++..   ..+...........+    ..+++..
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~  147 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNG------YKTFFVESICVDP---EVIAANIVQVKLGSP----DYVNRDS  147 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHT------CEEEEEEECCCCH---HHHHHHHHHHTTTST----TTTTSCH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcC------CeEEEEEeeccHH---HHHHHhHHHHhcCCC----cccccch
Confidence            33445566788987554333334545554443      5677888887631   222222222221111    2245666


Q ss_pred             CcChHHHHHHHHHhcc
Q 014461          300 GAGLKALTQYLMEQAV  315 (424)
Q Consensus       300 g~gi~~L~~~i~~~l~  315 (424)
                      +.++.++.+.+....+
T Consensus       148 ~~~~~~~~~~l~~~~~  163 (213)
T d1bifa1         148 DEATEDFMRRIECYEN  163 (213)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhccc
Confidence            6677777777766654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00039  Score=62.65  Aligned_cols=65  Identities=26%  Similarity=0.326  Sum_probs=42.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCcce-eecC-CCCceeeEEEEEEe---cCCccEEEEeCCCcccCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSR-KTNTTTHEVLGVMT---KADTQICIFDTPGLMLNK  201 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~-~~~~-~~~tt~~~~~~~~~---~~~~~i~l~DtpG~~~~~  201 (424)
                      .+..-|+++|+.++|||+|+|.|++.... .++. ...+|.........   ..+..+.++||.|+....
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            34567899999999999999999986532 1222 12344443322221   234569999999997643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=4.5e-05  Score=66.74  Aligned_cols=85  Identities=16%  Similarity=0.385  Sum_probs=55.3

Q ss_pred             cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH----HHHhcCCCCCeEEEE
Q 014461          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA----EQFKHLPGYERIFMT  295 (424)
Q Consensus       220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~~i  295 (424)
                      +.+.|.+++|+++.++ ......+.++|-.....   +++.++|+||+||..+. +.....    +.+.. .++. ++.+
T Consensus         8 vANiD~~~iV~s~~~P-~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~-~~~~~~~~~~~~y~~-~g~~-v~~~   80 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQP-SFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQ-DTEDTIQAYAEDYRN-IGYD-VYLT   80 (231)
T ss_dssp             EECCCEEEEEEESTTT-TCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCH-HHHHHHHHHHHHHHH-HTCC-EEEC
T ss_pred             ccccCEEEEEEECCCC-CCCHHHHHHHHHHHHHc---CCCEEEEEecccccccH-HHHHHHHHHHHHHhh-cccc-ceee
Confidence            4567999999988543 22333444444433222   47789999999998753 322222    23332 2454 9999


Q ss_pred             ecCCCcChHHHHHHHH
Q 014461          296 SGLKGAGLKALTQYLM  311 (424)
Q Consensus       296 SA~~g~gi~~L~~~i~  311 (424)
                      ||++|.|+++|.++|.
T Consensus        81 Sa~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          81 SSKDQDSLADIIPHFQ   96 (231)
T ss_dssp             CHHHHTTCTTTGGGGT
T ss_pred             ecCChhHHHHHHHhhc
Confidence            9999999999887764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.00039  Score=57.65  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      -..+|+|.|++|+|||||+++|..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.60  E-value=0.0005  Score=56.61  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=23.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+++.+|++.|+|||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999999999964

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.47  E-value=0.012  Score=51.50  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....|++.|+||+|||++++++.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00072  Score=55.27  Aligned_cols=22  Identities=9%  Similarity=0.292  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +-++|+|.+|||||||++.|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999974

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0022  Score=57.08  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=48.4

Q ss_pred             cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (424)
                      ..-++++||+||||||+++..|...-..  ...|..          ..+..++-+|+..+......  ...+...+....
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~--~~vp~~----------l~~~~i~~l~~~~liag~~~--~g~~e~r~~~i~  103 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQ--GDVPEV----------MADCTIYSLDIGSLLAGTKY--RGDFEKRFKALL  103 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHH--TCSCGG----------GTTCEEEECCCC---CCCCC--SSCHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHh--CCcccc----------cccceeEEeeechHhccCcc--chhHHHHHHHHH
Confidence            3467999999999999999998743221  111111          23445566666655533221  133455566666


Q ss_pred             hhcccccEEEEEEeCC
Q 014461          218 SAVNLFEVLMVVFDVH  233 (424)
Q Consensus       218 ~~~~~aD~vl~VvD~~  233 (424)
                      ..+...+-+|+++|--
T Consensus       104 ~~~~~~~~iIlfiDei  119 (268)
T d1r6bx2         104 KQLEQDTNSILFIDEI  119 (268)
T ss_dssp             HHHSSSSCEEEEETTT
T ss_pred             HHhhccCCceEEecch
Confidence            6776777778888853

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.17  E-value=0.00094  Score=54.66  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+|+++|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999863

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.09  E-value=0.0014  Score=54.95  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +++.+|+++|+||+||||+...|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999873

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0014  Score=57.60  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=24.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..++-+++|+|++|+|||||++.|.|-.
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3467789999999999999999999853

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.07  E-value=0.0016  Score=53.51  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..++..|.++|.|||||||+...|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999998863

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.06  E-value=0.0016  Score=57.19  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=24.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..++-.++++|++|+|||||++.|.|-.
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3567789999999999999999998743

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.05  E-value=0.0011  Score=55.45  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCChhHHHHhHhCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .-|+++|++|||||||++.|...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            45789999999999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.04  E-value=0.0035  Score=52.28  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++-|+|.|.+|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.00  E-value=0.0018  Score=57.35  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=24.1

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..++-.++++|++|+|||||++.|.|-.
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3456789999999999999999998743

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.98  E-value=0.0014  Score=55.96  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.++|..
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            455678999999999999999998843

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.98  E-value=0.0019  Score=54.30  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.8

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|+++|+|||||||+...|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0019  Score=57.01  Aligned_cols=28  Identities=14%  Similarity=0.278  Sum_probs=24.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..++-.++++|++|+|||||++.|.|-.
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3567789999999999999999998843

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.91  E-value=0.0017  Score=52.04  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=18.0

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      |++.|+||||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.89  E-value=0.0017  Score=53.15  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=18.3

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      ++|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            58999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.87  E-value=0.0021  Score=55.85  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|||||||++.+.|-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            456679999999999999999998743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0021  Score=57.68  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      ..++-.++++|++|+|||||++.|.|.
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            446678999999999999999999984

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0022  Score=55.79  Aligned_cols=27  Identities=22%  Similarity=0.486  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|||||||++.+.|-.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            456679999999999999999998853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.74  E-value=0.0021  Score=53.81  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.+|+++|+||+||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998863

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.73  E-value=0.0026  Score=55.57  Aligned_cols=27  Identities=15%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            455679999999999999999999854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0031  Score=55.05  Aligned_cols=27  Identities=33%  Similarity=0.462  Sum_probs=23.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            456679999999999999999998853

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.59  E-value=0.0029  Score=55.39  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            456678999999999999999999853

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.57  E-value=0.0027  Score=51.62  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      -|++.|+|||||||+.+.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.57  E-value=0.0029  Score=52.30  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+|+++|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.56  E-value=0.0032  Score=52.90  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=22.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.++|+++|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.56  E-value=0.003  Score=55.07  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEEecCCCChhHHHHhHhCCc
Q 014461          141 AVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++++|++|||||||++.+.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999999853

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0025  Score=54.48  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhCC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .-++++|++|||||||++.|+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            45789999999999999999753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.50  E-value=0.0025  Score=56.39  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=24.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..++-+++++|++|+|||||++.|.|-.
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3467789999999999999999998743

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.0035  Score=54.76  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345678999999999999999999854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0022  Score=53.52  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             EEEEecCCCChhHHHHhHhCCcce-eecCCCCceeeEE
Q 014461          142 VGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEV  178 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~~~~-~~~~~~~tt~~~~  178 (424)
                      |+++|++|+||+||++.|+..... -....+.||+..-
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R   43 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK   43 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCC
Confidence            889999999999999999853211 1233455665543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.46  E-value=0.0035  Score=54.74  Aligned_cols=27  Identities=15%  Similarity=0.412  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            345679999999999999999998854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0026  Score=55.44  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=22.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~  162 (424)
                      .++-.++++|++|+|||||++.+.|-
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45667999999999999999999983

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0036  Score=52.74  Aligned_cols=80  Identities=13%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .-+++++|+||||||+++..|...-..  ...|.          ...+.+++-+|+..+.....  ...++...+...+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~~--~~vp~----------~L~~~~i~~ld~~~LiAg~~--~rG~~E~rl~~il~  108 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRIIN--GEVPE----------GLKGRRVLALDMGALVAGAK--YRGEFEERLKGVLN  108 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHH--TCSCG----------GGTTCEEEEECHHHHHTTTC--SHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHHh--CCCCH----------HHcCceEEEeeHHHHhccCC--ccHHHHHHHHHHHH
Confidence            457899999999999999988743221  11111          13455677788766543211  11234455555555


Q ss_pred             hcccc-cEEEEEEeC
Q 014461          219 AVNLF-EVLMVVFDV  232 (424)
Q Consensus       219 ~~~~a-D~vl~VvD~  232 (424)
                      .+... .-+|+++|-
T Consensus       109 e~~~~~~~iILfIDe  123 (195)
T d1jbka_         109 DLAKQEGNVILFIDE  123 (195)
T ss_dssp             HHHHSTTTEEEEEET
T ss_pred             HHhcCCCcEEEEcch
Confidence            54322 234455553

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.38  E-value=0.0027  Score=55.07  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|||||||++.+.|-.
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            345679999999999999999999854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.35  E-value=0.0052  Score=50.11  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.-|++.|+|||||||+.+.|..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345588999999999999999865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.33  E-value=0.0039  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+|+++|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.32  E-value=0.0072  Score=53.11  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.-|++.|+||+|||||+.+|.+
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345589999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.24  E-value=0.0047  Score=54.58  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            456679999999999999999998753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.22  E-value=0.0045  Score=51.27  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++|+++|+||+||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999863

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.0051  Score=50.80  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +.+.-|+++|.|||||||++..+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567789999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0049  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=19.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++|+++|+|||||||....|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.18  E-value=0.0047  Score=54.49  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=23.3

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|..
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            345678999999999999999999853

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.18  E-value=0.0052  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..-|++.|.||+||||+.+.|..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44577889999999999999874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.005  Score=51.03  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +.+|+|+|+||+||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.14  E-value=0.0044  Score=50.98  Aligned_cols=20  Identities=20%  Similarity=0.421  Sum_probs=18.3

Q ss_pred             EEEEEecCCCChhHHHHhHh
Q 014461          141 AVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~  160 (424)
                      -|+|.|.+||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999885

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.0041  Score=49.82  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=18.8

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|.++|++||||||+...|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0044  Score=50.78  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|.+.|+||+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999874

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.13  E-value=0.0038  Score=51.03  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             eEEEEEecCCCChhHHHHhHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~  160 (424)
                      ++|+++|.+||||||+...|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999885

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0056  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.00  E-value=0.0032  Score=55.01  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=23.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~~~  163 (424)
                      .++-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            456689999999999999999999854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0056  Score=51.14  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEecCCCChhHHHHhHhCC
Q 014461          142 VGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~  162 (424)
                      |+|+|++||||+||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.92  E-value=0.036  Score=48.63  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=17.7

Q ss_pred             eEEEEEecCCCChhHHHHhHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~  160 (424)
                      .+|+|.|..||||||+.-.|.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHH
Confidence            468899999999999987654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.91  E-value=0.0059  Score=51.22  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..|.++|+|||||||+...|..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.005  Score=51.22  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|.++|.|||||||+.+.|..
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567888999999999999999863

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.1  Score=45.60  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..+++.|+||+|||++++++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            45689999999999999999974

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.63  E-value=0.0065  Score=49.42  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      +|+++|+|||||||+...|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998853

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.0094  Score=48.33  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..-++++|.||+||||+.+.|..
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0091  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++-|+|.|.+|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998853

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.39  E-value=0.015  Score=50.17  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+++.|+||+||||+++.+.+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999875

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.38  E-value=0.01  Score=49.61  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.8

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..++..|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34678899999999999999999864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.011  Score=49.39  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +...|+++|+|||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999964

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.014  Score=54.65  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (424)
                      .-++++||+||||||+++..|...-..  ++.|..          ..+..++-+|...+.......  ..+...+...+.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~~--~~vp~~----------l~~~~i~~ld~~~l~ag~~~~--g~~e~r~~~i~~  108 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIVK--GDVPEG----------LKGKRIVSLQMGSLLAGAKYR--GEFEERLKAVIQ  108 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHH--TCSCTT----------STTCEEEEECC-------------CHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHHh--CCCCHH----------HcCceEEEeeHhhhhcccCcc--hhHHHHHHHHHH
Confidence            455789999999999999877632111  111111          234456666765554321111  223344545455


Q ss_pred             hccccc-EEEEEEeC
Q 014461          219 AVNLFE-VLMVVFDV  232 (424)
Q Consensus       219 ~~~~aD-~vl~VvD~  232 (424)
                      .+...+ -+|+++|-
T Consensus       109 ~~~~~~~~~ilfide  123 (387)
T d1qvra2         109 EVVQSQGEVILFIDE  123 (387)
T ss_dssp             HHHTTCSSEEEEECC
T ss_pred             HhccCCCceEEEecc
Confidence            554443 35555664

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.35  E-value=0.011  Score=50.39  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++.+.|+|-|+|||||||....|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.27  E-value=0.0099  Score=49.75  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=18.5

Q ss_pred             EEEEecCCCChhHHHHhHhC
Q 014461          142 VGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~  161 (424)
                      |+|+|++|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.16  E-value=0.011  Score=48.64  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=17.0

Q ss_pred             EEEEecCCCChhHHHHhHh
Q 014461          142 VGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~  160 (424)
                      |+|.|.+||||||+++.|.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4678999999999999986

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.04  E-value=0.024  Score=48.81  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+.+.|+||+||||+++.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            34689999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.91  E-value=0.014  Score=53.16  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+|+|.|.+|+|||||+|+|++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCCEEEEeeccccchHHHHHHhh
Confidence            45699999999999999999985

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.88  E-value=0.021  Score=48.46  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=23.1

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++..|-+.|.||+|||||.+.|..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999999863

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.81  E-value=0.014  Score=47.75  Aligned_cols=19  Identities=16%  Similarity=0.349  Sum_probs=17.4

Q ss_pred             EEEEecCCCChhHHHHhHh
Q 014461          142 VGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~  160 (424)
                      |.++|.+||||||+.+.|.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999999885

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.02  Score=47.60  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++-|++.|.+||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357799999999999999998853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.57  E-value=0.044  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +.-|++.|+||+|||+|++++.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            44589999999999999999974

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.37  E-value=0.047  Score=47.32  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+..+.+.|+||+||||+++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.085  Score=47.36  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=22.0

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHh
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ....++-|+|.|.+||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34567889999999999999999875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.69  E-value=0.076  Score=47.14  Aligned_cols=26  Identities=15%  Similarity=0.117  Sum_probs=21.9

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHh
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ...+++-|+|.|.+|+|||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34457889999999999999998774

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.62  E-value=0.07  Score=49.24  Aligned_cols=25  Identities=16%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHh
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      .....+++++|++|||||-|..+|.
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHH
Confidence            4456779999999999999999885

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.30  E-value=0.08  Score=46.22  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.-+++.|+||+|||++++++.+
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHH
Confidence            345689999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.26  E-value=0.037  Score=48.29  Aligned_cols=19  Identities=32%  Similarity=0.615  Sum_probs=16.6

Q ss_pred             EEEecCCCChhHHHHhHhC
Q 014461          143 GIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       143 ~vvG~~~~GKStLin~l~~  161 (424)
                      .+.|+||+|||++++++..
T Consensus        50 ~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHH
Confidence            4569999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.038  Score=46.57  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|+|-|..||||||+++.|..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            55689999999999999998863

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.037  Score=47.83  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....+++.|+||+||||++.++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999975

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.14  E-value=0.031  Score=50.50  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+..++++|+||+|||.|.+++..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            345688999999999999999874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.92  E-value=0.042  Score=46.94  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.1

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+.+.|+||+||||++..+..
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            34589999999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.04  Score=46.39  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +-|+|.|+|||||||+...|..
T Consensus         4 piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688889999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.77  E-value=0.039  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|+|.|++|+|||||+..+..
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            34688999999999999998763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.053  Score=45.83  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++.-|+|-|..||||||+++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999998888753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.039  Score=47.21  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...|+|-|..||||||+++.|..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.36  E-value=0.049  Score=45.53  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=18.7

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.25  E-value=0.063  Score=44.06  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcce
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKVA  165 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~~  165 (424)
                      +.-|++.|++|+||||+.-.|......
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G~~   41 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKNHL   41 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTTCE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence            455899999999999999998865443

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=90.65  E-value=0.06  Score=44.20  Aligned_cols=26  Identities=27%  Similarity=0.249  Sum_probs=21.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKV  164 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~  164 (424)
                      +.-|++.|++|+||||+.-.|.....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            45589999999999999999875443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.072  Score=44.84  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +-|+|.|.+|+||||..+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4689999999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=90.36  E-value=0.093  Score=43.95  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +-|++.|.+||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.33  E-value=0.043  Score=48.79  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=17.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..-|+|.|.+||||||+.++|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            345699999999999999998753

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.28  E-value=0.12  Score=47.43  Aligned_cols=27  Identities=15%  Similarity=0.145  Sum_probs=22.6

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..++...+++.|+||+|||++.+++.+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            345566899999999999999999874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.07  E-value=0.088  Score=42.84  Aligned_cols=26  Identities=27%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHhCCcc
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVGTKV  164 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~~~~  164 (424)
                      +.-|++.|++|+||||+.-.|.....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            45689999999999999988875443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.07  E-value=0.015  Score=48.11  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=16.9

Q ss_pred             EEEEecCCCChhHHHHhHh
Q 014461          142 VGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~  160 (424)
                      .+|+|++|+||||++.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4588999999999999985

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=0.074  Score=45.26  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.+.|++|+||||++..+..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHH
Confidence            3488999999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.52  E-value=0.081  Score=44.84  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.0

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.+.|+||+||||++..+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3488999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=0.17  Score=45.45  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=19.9

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++++|++|||||.|...|..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            44689999999999999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.34  E-value=0.079  Score=45.52  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=19.8

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+.+.|++|+||||++..+..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.32  E-value=0.066  Score=47.63  Aligned_cols=19  Identities=37%  Similarity=0.646  Sum_probs=16.9

Q ss_pred             EEEEecCCCChhHHHHhHh
Q 014461          142 VGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~  160 (424)
                      -+++|+.|+||||++.+|.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            4789999999999999873

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.11  Score=44.39  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +..|+|=|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999999999874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.06  E-value=0.11  Score=43.81  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHh
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ++.-|+|-|..||||||+++.|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHH
Confidence            56779999999999999999885

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.02  E-value=0.078  Score=46.56  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.-|++.|+||+|||+|++++.+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHH
Confidence            3455699999999999999999975

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.1  Score=43.10  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=22.5

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+++--+.|.|+||+|||+|+..+..
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            445667789999999999999998864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.94  E-value=0.094  Score=44.39  Aligned_cols=21  Identities=29%  Similarity=0.426  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.+.|++|+||||++..+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            488999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.10  E-value=0.13  Score=43.52  Aligned_cols=27  Identities=15%  Similarity=0.202  Sum_probs=22.9

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+++.-+.|.|+||+|||+|+..+.-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            355677889999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=88.10  E-value=0.094  Score=49.66  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +.+|+++|++|||||-|+++|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.64  E-value=0.27  Score=43.15  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....|+|.|.+|+|||||+..+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=87.56  E-value=0.13  Score=42.94  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=22.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++.-.+++.|+||+|||+++++|+.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHH
Confidence            45667899999999999999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.75  E-value=0.13  Score=47.52  Aligned_cols=19  Identities=32%  Similarity=0.620  Sum_probs=16.9

Q ss_pred             EEEEecCCCChhHHHHhHh
Q 014461          142 VGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~  160 (424)
                      -+|+|++|+||||++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4688999999999999973

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=86.61  E-value=0.11  Score=47.02  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=19.1

Q ss_pred             eEEEEEecCCCChhHHHHhHh
Q 014461          140 VAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~  160 (424)
                      ..|++.|+||+|||+|+.++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            469999999999999999885

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.39  E-value=0.2  Score=42.62  Aligned_cols=27  Identities=11%  Similarity=0.208  Sum_probs=22.7

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+.+--+.|.|+||+|||+|...++.
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            456677889999999999999998763

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.10  E-value=0.21  Score=37.97  Aligned_cols=25  Identities=0%  Similarity=0.081  Sum_probs=22.3

Q ss_pred             cccceEEEEEecCCCChhHHHHhHh
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ...++.|.+-|.+|+|||||.++|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            3468899999999999999999986

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=86.07  E-value=0.21  Score=46.55  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ....-|+|.|++|+||||++.+++.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhh
Confidence            4567799999999999999999975

>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: Ribosomal protein S3 N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.77  E-value=0.32  Score=35.99  Aligned_cols=65  Identities=17%  Similarity=0.340  Sum_probs=41.0

Q ss_pred             HHHHHHHhhcCccCCcceE-EEEEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEE
Q 014461          338 VVRERLLDHVHQEIPYSIE-HRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHL  416 (424)
Q Consensus       338 ~ire~l~~~l~~eip~~~~-~~~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l  416 (424)
                      .+|+-+...+...   .+. +.+   +...+   .+...|++   +..++|||++|+.|+++    +++|+++++.++.|
T Consensus        37 ~IR~~i~k~~~~a---gIs~IeI---eR~~~---~i~I~I~t---arPG~iIGkkG~~i~~L----~~~l~k~~~k~v~i  100 (105)
T d2uubc1          37 RIRGLLEKELYSA---GLARVDI---ERAAD---NVAVTVHV---AKPGVVIGRGGERIRVL----REELAKLTGKNVAL  100 (105)
T ss_dssp             HHHHHHHHSTTTT---TEEEECC---EESSS---CEECCEEE---SCHHHHHCSTTSHHHHH----HHHHHHHSSCCCCC
T ss_pred             HHHHHHHhhcccc---CcceEEE---EEccC---cEEEEEEE---CCCceEEcCCchhHHHH----HHHHHHHhCCCceE
Confidence            5777776666532   222 222   22222   34445554   45789999999999877    45678899988776


Q ss_pred             EE
Q 014461          417 IL  418 (424)
Q Consensus       417 ~l  418 (424)
                      ++
T Consensus       101 nI  102 (105)
T d2uubc1         101 NV  102 (105)
T ss_dssp             CC
T ss_pred             EE
Confidence            53

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.49  E-value=0.19  Score=45.40  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=22.1

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ++..+|.|=|.-|+||||+++.|..
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=85.46  E-value=0.23  Score=42.15  Aligned_cols=27  Identities=22%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+++.-+.|.|+||+|||+|+..+..
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            455677889999999999999998864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.15  E-value=0.21  Score=46.57  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=19.3

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++|+|.+|+|||++++.++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            34589999999999999987763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=84.89  E-value=0.77  Score=36.47  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             ccceEEEEEecCCCChhHHHHhHhC
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++..|.+-|.=|||||||+..++.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHh
Confidence            3456789999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=84.58  E-value=0.24  Score=44.52  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=18.5

Q ss_pred             eEEEEEecCCCChhHHHHhHhC
Q 014461          140 VAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       140 ~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ..+++.|+||+|||.|..+|.+
T Consensus       124 g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            3455679999999999999975

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=84.36  E-value=0.29  Score=41.24  Aligned_cols=26  Identities=15%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.+--+.|.|+||+|||+|+..+.-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            45567789999999999999998863

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.32  E-value=0.27  Score=41.84  Aligned_cols=21  Identities=14%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .|++.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.12  E-value=0.25  Score=41.59  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=18.8

Q ss_pred             EEEEecCCCChhHHHHhHhCC
Q 014461          142 VGIIGAPNAGKSSIINYMVGT  162 (424)
Q Consensus       142 v~vvG~~~~GKStLin~l~~~  162 (424)
                      +.+.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            679999999999999998753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=83.26  E-value=0.32  Score=40.66  Aligned_cols=26  Identities=12%  Similarity=0.069  Sum_probs=21.6

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHh
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      ..+++.-+.|.|+||+|||+|+..++
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            45567788999999999999987765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.04  E-value=0.35  Score=40.93  Aligned_cols=28  Identities=11%  Similarity=0.106  Sum_probs=23.4

Q ss_pred             hhcccceEEEEEecCCCChhHHHHhHhC
Q 014461          134 EEDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       134 ~~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+++.-+.|.|+||+|||+|.-.++.
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456677889999999999999998864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=81.66  E-value=0.31  Score=43.93  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            456799999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=81.63  E-value=0.4  Score=41.57  Aligned_cols=24  Identities=13%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             ccceEEEEEecCCCChhHHHHhHh
Q 014461          137 QKSVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       137 ~~~~~v~vvG~~~~GKStLin~l~  160 (424)
                      .++--+++.|.||+|||+|+..+.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHH
Confidence            345567899999999999988875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.63  E-value=0.57  Score=41.84  Aligned_cols=21  Identities=14%  Similarity=0.381  Sum_probs=18.3

Q ss_pred             EEEEEecCCCChhHHHHhHhC
Q 014461          141 AVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       141 ~v~vvG~~~~GKStLin~l~~  161 (424)
                      .+.++|++|+|||.+...|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            678899999999999998763

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=81.38  E-value=0.4  Score=43.22  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             cceEEEEEecCCCChhHHHHhHhC
Q 014461          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       138 ~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...+|.|=|.-|+||||+++.|..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            457899999999999999999975

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=80.82  E-value=0.4  Score=41.43  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=18.7

Q ss_pred             ceEEEEEecCCCChhHHHHhHh
Q 014461          139 SVAVGIIGAPNAGKSSIINYMV  160 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~  160 (424)
                      +.-+++.|.+|+|||||+-.|.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            4457899999999999998875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=80.55  E-value=0.48  Score=41.72  Aligned_cols=27  Identities=19%  Similarity=0.287  Sum_probs=23.7

Q ss_pred             hcccceEEEEEecCCCChhHHHHhHhC
Q 014461          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       135 ~~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      ...++.+++++|.+|+|||+|+..+..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            456789999999999999999988874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.34  E-value=0.72  Score=38.29  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             ceEEEEEecCCCChhHHHHhHhC
Q 014461          139 SVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       139 ~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      +.-+++.|++|+||||++..+..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34489999999999999998764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=80.14  E-value=0.53  Score=41.00  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             cccceEEEEEecCCCChhHHHHhHhC
Q 014461          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (424)
Q Consensus       136 ~~~~~~v~vvG~~~~GKStLin~l~~  161 (424)
                      .++.-.+.+.|++++|||+|++.+..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            34566788999999999999998763