Citrus Sinensis ID: 014462

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHcccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHHHHccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHHccHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHEEHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MISANETSLIFLVAVGPSIVVMAFMFIVrpigghrqvrlsdntsFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVffteppppveeTLLAetnkgeasksedyqeEVILsevedekppevdslpaSERQKRIAHLQAKLFQAAAEGAVRVkrrkgprrgedftlpqALMKADFLLLFFSLVLasgsgltvIDNLGQICQslgyadtsIYVSMISIWNFLgrvgggyfSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFltlaspagsliFSGVIASGIYDYYAEKQAGLLWkyngnmlpvsfrdqetptclgsicySITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYgnlnrsnr
Flexible Loop (DISEMBL)
MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAetnkgeasksedyQEEVIlsevedekppevDSLPASERQKRIAHLQAKLFQAaaegavrvkrrkgprrgedftlPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAqlygnlnrsnr
Low Complexity Region (SEG)
MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMlavllledlevaNQNvltvlavgliiiillpvtipvvlvffteppppveetllAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAvrvkrrkgprrgEDFTLPQALMKADflllffslvlasgsglTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPvamavaqvvmaFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Disordered region (IsUnstruct)
*******SLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFT************************************************************LF*********************FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN******
Disordered Region (DISOPRED)
***ANETSLIFLVAVGPSIVVMAFMFIVRPIG***********SFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPP******************************************************************************FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWK****MLP*SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYA***********
Disordered Region (DISEMBL)
MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAE*************EEVILSE***************ERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Disordered Region (DISPRO)
*ISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTE****************************************************************AEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG*****************ETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNR***
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
P37662	402	Inner membrane protein Yh	N/A	no	0.358	0.378	0.288	5e-05
Q6CGU8	486	Probable transporter MCH1	no	no	0.490	0.427	0.254	0.0005

>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12) GN=yhjX PE=1 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD---TSIYVSMISIW 239
           +D+TL +++ K  + +L    + A  SGL VI     I QSL + D    +  V++ISI 
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIA 262

Query: 240 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSY 299
           N  GR+  G  S+ I R     R + +     ++  A L +A       +     V  ++
Sbjct: 263 NLSGRLVLGILSDKIAR----IRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNF 318

Query: 300 GAHWAIVPAAASELFGL----KSFGALYNFLTLASPAGSLIFS 338
           G    + P+  SE FGL    K++G +Y    + S  GS+I S
Sbjct: 319 GGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIAS 361

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 40/248 (16%)

Query: 154 RIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTV 213
           R A   A   +  AE +       GP   E  TL +        L     V   G     
Sbjct: 234 RTAESMASELRKKAEASTDCNC-DGPGH-EGATLKEFFTDKTAWLFLLCFVFIGGPFEMF 291

Query: 214 IDNLGQICQSLGY--ADT---SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV 268
            +N+G I  ++    AD+   S +VS+ + ++ + R+  G+ SEA+    +  RPV ++V
Sbjct: 292 QNNMGAILDTVTVENADSPSFSTHVSLFATFSTVSRLVVGFSSEAMESHVS--RPVLLSV 349

Query: 269 AQVVMAFALLYYAIGWPGEIY----------VTTVLVGLSYGAHWAIVPAAASELFGLKS 318
             +V A   L      P  I+          V T++ G SYG+ + +VP   ++++G+ +
Sbjct: 350 IALVAACIHLMV----PSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIAN 405

Query: 319 FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCL 378
            G ++    LA   GSL + G++ + +YD  A  + G+     G+M  V         C 
Sbjct: 406 LGTIWGSFILALAVGSLGY-GLLFAKVYD--AASEVGV-----GSMSQV---------CS 448

Query: 379 GSICYSIT 386
           G  CY +T
Sbjct: 449 GVHCYGLT 456

Probable transporter.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
255540211	589	conserved hypothetical protein [Ricinus	0.976	0.702	0.756	1e-176
224122040	591	predicted protein [Populus trichocarpa]	0.981	0.703	0.743	1e-173
147789864	590	hypothetical protein VITISV_001273 [Viti	0.985	0.708	0.713	1e-161
359491100	588	PREDICTED: uncharacterized protein LOC10	0.985	0.710	0.713	1e-161
225451469	591	PREDICTED: uncharacterized protein LOC10	0.981	0.703	0.663	1e-152
147853498	591	hypothetical protein VITISV_016786 [Viti	0.981	0.703	0.663	1e-152
255536871	589	conserved hypothetical protein [Ricinus	0.981	0.706	0.664	1e-148
226495681	596	nodulin-like protein [Zea mays] gi|19565	0.981	0.697	0.634	1e-143
225451471	591	PREDICTED: uncharacterized protein LOC10	0.981	0.703	0.656	1e-142
413920529	484	nodulin-like protein, mRNA [Zea mays] gi	0.981	0.859	0.625	1e-141

>gi|255540211|ref|XP_002511170.1| conserved hypothetical protein [Ricinus communis] gi|223550285|gb|EEF51772.1| conserved hypothetical protein [Ricinus communis]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/419 (75%), Positives = 368/419 (87%), Gaps = 5/419 (1%)

Query: 5   NETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLL 64
           NE  LIF+VAVGPS+VV+A MFI+RP+GGHRQ R SDN+SFL+TY++CL+LAAY+L VL+
Sbjct: 172 NEAWLIFMVAVGPSMVVIALMFIIRPVGGHRQARPSDNSSFLYTYSICLVLAAYLLGVLI 231

Query: 65  LEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSE 124
           LED+   +Q+++T+ ++ LII+ILLP+TIPV+LVFF EP   VEETLL E  K E   S 
Sbjct: 232 LEDVVDVSQSLVTLFSIILIILILLPITIPVLLVFFFEPRSQVEETLLPEPEKQEGVNSG 291

Query: 125 DYQE--EVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRG 182
             Q+  EVILSEVEDEKP EV+SLPASER KRIAHLQAKLFQAAAEGAVRVKR+KGPRRG
Sbjct: 292 QEQDANEVILSEVEDEKPAEVESLPASERHKRIAHLQAKLFQAAAEGAVRVKRKKGPRRG 351

Query: 183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
           EDFTL QAL+KADFLL+FFSL+LASGSGLTVIDNLGQICQSLGY +TSI+VSMISIWNFL
Sbjct: 352 EDFTLLQALVKADFLLMFFSLILASGSGLTVIDNLGQICQSLGYTNTSIFVSMISIWNFL 411

Query: 243 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
           GRVGGGYFSEAI+R FAYPRPVAMAVAQV+MA  L YYA+GWPGEIYV ++L+GLSYGAH
Sbjct: 412 GRVGGGYFSEAIIRNFAYPRPVAMAVAQVIMAIGLFYYAMGWPGEIYVVSILIGLSYGAH 471

Query: 303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN- 361
           WAIVPAA SELFGLKSFGALYNFLTL+S AGSLIFSGVIASGIYDYYAEKQA  + + N 
Sbjct: 472 WAIVPAAVSELFGLKSFGALYNFLTLSSTAGSLIFSGVIASGIYDYYAEKQA--IQQLNA 529

Query: 362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLN 420
           G+ML     ++E+ TC+GSICYS+TCGIM+GLCI+AM++SLIVVHRT+SVYAQLYG  N
Sbjct: 530 GSMLAAHLVEEESLTCVGSICYSLTCGIMSGLCIVAMILSLIVVHRTRSVYAQLYGKTN 588

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122040|ref|XP_002318735.1| predicted protein [Populus trichocarpa] gi|222859408|gb|EEE96955.1| predicted protein [Populus trichocarpa]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 310/417 (74%), Positives = 361/417 (86%), Gaps = 1/417 (0%)

Query: 3   SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAV 62
           S NE SLIF++AVGPS+VV+A MF+VRP+ GHRQ R SDN+SFLFTY+VCL+LAAY+L V
Sbjct: 172 SPNEASLIFMIAVGPSMVVIAIMFVVRPVRGHRQARSSDNSSFLFTYSVCLVLAAYLLGV 231

Query: 63  LLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASK 122
           L++EDL   NQ +LTVL   LII++LLP+TIPV+L F++EP  PVEE LL ET+K E+SK
Sbjct: 232 LIVEDLVNLNQTLLTVLVAVLIILVLLPITIPVLLAFYSEPRHPVEENLLPETDKQESSK 291

Query: 123 SE-DYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRR 181
           SE       ILSE+EDEKP E+D L  +ER +RIAHLQAKLFQAAAEGAVR+KRRKGPRR
Sbjct: 292 SELQIGGSFILSEMEDEKPSEMDLLQPTERHRRIAHLQAKLFQAAAEGAVRIKRRKGPRR 351

Query: 182 GEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNF 241
           GEDFTL QAL KADFLL+FFSLVLASGSGLTVIDNLGQICQSLGY DTSI+VSMISIWNF
Sbjct: 352 GEDFTLMQALRKADFLLMFFSLVLASGSGLTVIDNLGQICQSLGYNDTSIFVSMISIWNF 411

Query: 242 LGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGA 301
           LGRVGGGYFSEAI+RK+AYPRPVAMAV QVVMA AL YYA+GWPGEIYV ++ +GL YGA
Sbjct: 412 LGRVGGGYFSEAIIRKYAYPRPVAMAVVQVVMAVALFYYAMGWPGEIYVLSIFIGLGYGA 471

Query: 302 HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN 361
           HWAIVPA+ASELFGLKSFGALYNFLTL+SPAGSLIFSGVIASGIYD++A KQAGL    +
Sbjct: 472 HWAIVPASASELFGLKSFGALYNFLTLSSPAGSLIFSGVIASGIYDHFARKQAGLQQLNS 531

Query: 362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 418
           G++      ++++ TC+G  CYS+TCGIM+GLCIIA+++SLIVV RTKSVYAQLYGN
Sbjct: 532 GSLPATHLEEEKSLTCVGLECYSLTCGIMSGLCIIAVILSLIVVRRTKSVYAQLYGN 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789864|emb|CAN73867.1| hypothetical protein VITISV_001273 [Vitis vinifera]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/419 (71%), Positives = 357/419 (85%), Gaps = 1/419 (0%)

Query: 1   MISA-NETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 59
           MI+A N  +LIF+VA+GPS+VV+A MFIVRP+GGH+Q+R SD++SFLFT+++CLILAAY+
Sbjct: 169 MINAPNAAALIFMVAIGPSMVVIALMFIVRPVGGHKQLRPSDSSSFLFTFSLCLILAAYL 228

Query: 60  LAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGE 119
           L VLLLEDL   +Q ++T+L V LI+IILLPV IP++LVFF+ P  P EE  L E  K E
Sbjct: 229 LGVLLLEDLVGLSQALVTLLTVLLIVIILLPVAIPIILVFFSGPIAPSEEAFLPEPQKQE 288

Query: 120 ASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGP 179
           + KSE   EEVILSEVEDEKP EVDSLPASER KRIAHLQAKLFQAAAEGAVRVKR++GP
Sbjct: 289 SGKSEQDGEEVILSEVEDEKPVEVDSLPASERHKRIAHLQAKLFQAAAEGAVRVKRKRGP 348

Query: 180 RRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIW 239
           RRGEDFTL QAL+KADF L+F SL+LA+GSGLT+IDN+GQ+C+SLGY+DTS++VSMISIW
Sbjct: 349 RRGEDFTLMQALIKADFWLIFVSLLLAAGSGLTIIDNMGQMCESLGYSDTSVFVSMISIW 408

Query: 240 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSY 299
           NFLGRVGGGYFSE+IVR FA+PRPV+MA+ QV+M+  LLYYA+ WPG IYV +VL+GL Y
Sbjct: 409 NFLGRVGGGYFSESIVRNFAFPRPVSMAMFQVLMSVGLLYYALAWPGAIYVVSVLIGLGY 468

Query: 300 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWK 359
           GAHWAIVPAAASELFGLKSFGALYNFLTL+S  G+LIFS VIASGIYD+YAEKQA L   
Sbjct: 469 GAHWAIVPAAASELFGLKSFGALYNFLTLSSSIGTLIFSEVIASGIYDHYAEKQAALKQH 528

Query: 360 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 418
             G M  +     E+ +C G ICYSITCG+M+GLC++A+V+SLIVVHRTKSVYA LYG 
Sbjct: 529 SLGAMAGLPLGKDESLSCEGYICYSITCGVMSGLCLVAVVLSLIVVHRTKSVYANLYGR 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491100|ref|XP_002280267.2| PREDICTED: uncharacterized protein LOC100247479 [Vitis vinifera] gi|297734441|emb|CBI15688.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/419 (71%), Positives = 357/419 (85%), Gaps = 1/419 (0%)

Query: 1   MISA-NETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 59
           MI+A N  +LIF+VA+GPS+VV+A MFIVRP+GGH+Q+R SD++SFLFT+++CLILAAY+
Sbjct: 167 MINAPNAAALIFMVAIGPSMVVIALMFIVRPVGGHKQLRPSDSSSFLFTFSLCLILAAYL 226

Query: 60  LAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGE 119
           L VLLLEDL   +Q ++T+L V LI+IILLPV IP++LVFF+ P  P EE  L E  K E
Sbjct: 227 LGVLLLEDLVGLSQALVTLLTVLLIVIILLPVAIPIILVFFSGPIAPSEEAFLPEPQKQE 286

Query: 120 ASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGP 179
           + KSE   EEVILSEVEDEKP EVDSLPASER KRIAHLQAKLFQAAAEGAVRVKR++GP
Sbjct: 287 SGKSEQDGEEVILSEVEDEKPVEVDSLPASERHKRIAHLQAKLFQAAAEGAVRVKRKRGP 346

Query: 180 RRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIW 239
           RRGEDFTL QAL+KADF L+F SL+LA+GSGLT+IDN+GQ+C+SLGY+DTS++VSMISIW
Sbjct: 347 RRGEDFTLMQALIKADFWLIFVSLLLAAGSGLTIIDNMGQMCESLGYSDTSVFVSMISIW 406

Query: 240 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSY 299
           NFLGRVGGGYFSE+IVR FA+PRPV+MA+ QV+M+  LLYYA+ WPG IYV +VL+GL Y
Sbjct: 407 NFLGRVGGGYFSESIVRNFAFPRPVSMAMFQVLMSVGLLYYALAWPGAIYVVSVLIGLGY 466

Query: 300 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWK 359
           GAHWAIVPAAASELFGLKSFGALYNFLTL+S  G+LIFS VIASGIYD+YAEKQA L   
Sbjct: 467 GAHWAIVPAAASELFGLKSFGALYNFLTLSSSIGTLIFSEVIASGIYDHYAEKQAALKQH 526

Query: 360 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 418
             G M  +     E+ +C G ICYSITCG+M+GLC++A+V+SLIVVHRTKSVYA LYG 
Sbjct: 527 SLGAMAGLPLGKDESLSCEGYICYSITCGVMSGLCLVAVVLSLIVVHRTKSVYANLYGR 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/419 (66%), Positives = 330/419 (78%), Gaps = 3/419 (0%)

Query: 3   SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAV 62
           S +  SL+F+VAVGP +VV A MFIVRP+GGHRQVR +D+ SF F Y VCL+LAAY++ V
Sbjct: 170 SPDHASLVFMVAVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGV 229

Query: 63  LLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASK 122
           +L++DL   +  V+T+    L ++IL P+ IPV L FF+EP  P  E LL E  K E  K
Sbjct: 230 MLVQDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGK 289

Query: 123 SEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRG 182
           SE    EVI SEVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+GP RG
Sbjct: 290 SEQDATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRG 349

Query: 183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
           EDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFL
Sbjct: 350 EDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFL 409

Query: 243 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
           GR+GGGYFSE IVR  AYPRPVAMA AQV+MA   L++A+GWPG +++ T+L+GL YGAH
Sbjct: 410 GRIGGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAH 469

Query: 303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---GLLWK 359
           WAIVPAAASELFGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD  AEKQA     L +
Sbjct: 470 WAIVPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQ 529

Query: 360 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 418
             G++        + P C GSIC+ +T  IM+GLCIIA+V+S+++VHRTK VYA LYG 
Sbjct: 530 NVGSIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/419 (66%), Positives = 330/419 (78%), Gaps = 3/419 (0%)

Query: 3   SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAV 62
           S +  SL+F+VAVGP +VV A MFIVRP+GGHRQVR +D+ SF F Y VCL+LAAY++ V
Sbjct: 170 SPDHASLVFMVAVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGV 229

Query: 63  LLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASK 122
           +L++DL   +  V+T+    L ++IL P+ IPV L FF+EP  P  E LL E  K E  K
Sbjct: 230 MLVQDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGK 289

Query: 123 SEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRG 182
           SE    EVI SEVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+GP RG
Sbjct: 290 SEQDATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRG 349

Query: 183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
           EDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFL
Sbjct: 350 EDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFL 409

Query: 243 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
           GR+GGGYFSE IVR  AYPRPVAMA AQV+MA   L++A+GWPG +++ T+L+GL YGAH
Sbjct: 410 GRIGGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAH 469

Query: 303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---GLLWK 359
           WAIVPAAASELFGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD  AEKQA     L +
Sbjct: 470 WAIVPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQ 529

Query: 360 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 418
             G++        + P C GSIC+ +T  IM+GLCIIA+V+S+++VHRTK VYA LYG 
Sbjct: 530 NVGSIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/417 (66%), Positives = 330/417 (79%), Gaps = 1/417 (0%)

Query: 3   SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAV 62
           S N  SLIF+VAVGP++VV+  MFI+RP+GGHRQVR SD TSF F Y+VCL+LAAY++ V
Sbjct: 170 SPNHASLIFMVAVGPAMVVVTLMFIIRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGV 229

Query: 63  LLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASK 122
           +LLEDL   +  ++ V  V L +++LLP+ IP+ L FF EP  P EETLL E+ K EA K
Sbjct: 230 MLLEDLVDLSHTLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQEAGK 289

Query: 123 SEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRG 182
           SE    EVILSEVEDEKP EVD LPASER+KRIA LQ KLFQAAAEGAVR+KRR+GP RG
Sbjct: 290 SEQDGHEVILSEVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRGPHRG 349

Query: 183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
           EDFTL QAL+KADF L+F SL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFL
Sbjct: 350 EDFTLMQALIKADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 409

Query: 243 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
           GRVGGGYFSE IVR +AYPRP+AMAVAQ VMA   +++A  WPG +Y+ T+L+GL YGAH
Sbjct: 410 GRVGGGYFSEIIVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLGYGAH 469

Query: 303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG-LLWKYN 361
           WAIVPAAASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA     +  
Sbjct: 470 WAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAHEHHMRTA 529

Query: 362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 418
           G++    F   E   C G++CY +T  IM+G CIIA+++SLI+VHRTK VYA LYG 
Sbjct: 530 GSLFSGLFGPDEPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYGK 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226495681|ref|NP_001152103.1| nodulin-like protein [Zea mays] gi|195652627|gb|ACG45781.1| nodulin-like protein [Zea mays]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/424 (63%), Positives = 334/424 (78%), Gaps = 8/424 (1%)

Query: 3   SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAV 62
           S ++ +LIF+VAVGP+++V+A MFIVRP+GGHRQVR SDNTSF F Y+VCL+LAAY++ V
Sbjct: 170 SPDDAALIFMVAVGPTMIVIALMFIVRPVGGHRQVRPSDNTSFTFVYSVCLLLAAYLMGV 229

Query: 63  LLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGE--A 120
           +LLEDL   +Q+V  +L + LII +L+P+ IPV+L FF++    +   LL    K E  A
Sbjct: 230 MLLEDLVDLSQSVTVLLTIVLIIFLLVPIVIPVLLSFFSDDDETLHALLLPSPRKEEPSA 289

Query: 121 SKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPR 180
           S S + Q+EVILSEVEDEKP +VD LPASERQKRIA LQ +LFQAAA+GAVRVKRRKGPR
Sbjct: 290 STSSEEQQEVILSEVEDEKPKDVDLLPASERQKRIAELQTRLFQAAADGAVRVKRRKGPR 349

Query: 181 RGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWN 240
           RGEDFTL QAL+KADF LLFFSL+L SGSGLTVIDNLGQ+CQSLGY +T I+VSMISIWN
Sbjct: 350 RGEDFTLMQALIKADFWLLFFSLLLGSGSGLTVIDNLGQMCQSLGYEETHIFVSMISIWN 409

Query: 241 FLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYG 300
           FLGR+GGGYFSE IV+ +AYPR +A+A+AQ++MA     +A+ WPG +YV T+LVG+ YG
Sbjct: 410 FLGRIGGGYFSEIIVKDYAYPRAIALAIAQILMAIGHFNFAMAWPGTMYVGTLLVGVGYG 469

Query: 301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA------ 354
           AHWAIVPAAASELFG+K+FGALYNFLT+A+PAGSL+FSGVIASGIYD  A KQA      
Sbjct: 470 AHWAIVPAAASELFGVKNFGALYNFLTVANPAGSLVFSGVIASGIYDAEAAKQAQQRHST 529

Query: 355 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQ 414
             L   +G ++ V         C G+IC+ ++  IMAG C++A  +SLI+V+RTK VYA 
Sbjct: 530 SKLLATSGRVVSVVSEAAPALKCEGAICFFLSSLIMAGFCVVAFGLSLILVYRTKVVYAG 589

Query: 415 LYGN 418
           LYG 
Sbjct: 590 LYGK 593

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/419 (65%), Positives = 329/419 (78%), Gaps = 3/419 (0%)

Query: 3   SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAV 62
           S +  SL+F+VAVGP++VV A MFIVRP+GGHRQVR +D+ SF F Y VCL+LAAY++ V
Sbjct: 170 SPDHASLVFMVAVGPTMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLVLAAYLMGV 229

Query: 63  LLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASK 122
           +LL+DL   +  V+T+    L +++L+P+ IPV L F +EP  P  E LL E  K E  K
Sbjct: 230 MLLQDLVDLSHTVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKEEPGK 289

Query: 123 SEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRG 182
           SE    EVI SE+EDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+GPRRG
Sbjct: 290 SEQDATEVIFSELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPRRG 349

Query: 183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
           EDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFL
Sbjct: 350 EDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 409

Query: 243 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
           GR+GGGYFSE IVR +AYPRPVAMAVAQV MA   L++A+GWPG +Y+ T+L+GL YGAH
Sbjct: 410 GRIGGGYFSEMIVRDYAYPRPVAMAVAQVTMALGHLFFAMGWPGSLYIGTLLIGLGYGAH 469

Query: 303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 362
           WAIVPAAASELFGLK+FGALYNF+ LA+P GSL+FSGVIAS IYD  AEKQA        
Sbjct: 470 WAIVPAAASELFGLKNFGALYNFINLANPTGSLVFSGVIASSIYDREAEKQAHHHHHQQQ 529

Query: 363 NMLPV---SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 418
           NM  +        + P C GSIC+ +T  IM+G+CIIA+V+S+++VHRTK VYA LYG 
Sbjct: 530 NMGSIFSGMLSVDDPPKCEGSICFFLTSMIMSGICIIAVVLSMVLVHRTKVVYANLYGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413920529|gb|AFW60461.1| nodulin-like protein, mRNA [Zea mays] gi|414869668|tpg|DAA48225.1| TPA: nodulin-like protein, mRNA [Zea mays]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/424 (62%), Positives = 331/424 (78%), Gaps = 8/424 (1%)

Query: 3   SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAV 62
           S ++ +LIF+VAVGP+++V+A MFIVRP+GGHRQVR SDNTSF F Y+VCL+LAAY++ V
Sbjct: 58  SPDDAALIFMVAVGPTMIVIALMFIVRPVGGHRQVRPSDNTSFTFVYSVCLLLAAYLMGV 117

Query: 63  LLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGE--A 120
           +LLEDL   +Q+V  +L + LII +L+P+ IPV+L FF++    +   LL    K E  A
Sbjct: 118 MLLEDLVDLSQSVTVLLTIVLIIFLLVPIVIPVLLSFFSDDDETLHALLLPSPRKEEPSA 177

Query: 121 SKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPR 180
           S S + Q+EVILSEVEDEKP +VD LPASERQKRIA LQ +LFQAAA+GAVRVKRRKGPR
Sbjct: 178 STSSEEQQEVILSEVEDEKPKDVDLLPASERQKRIAELQTRLFQAAADGAVRVKRRKGPR 237

Query: 181 RGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWN 240
           RGEDFTL QAL+KADF LLF SL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWN
Sbjct: 238 RGEDFTLMQALIKADFWLLFLSLLLGSGSGLTVIDNLGQMSQSLGYEETHIFVSMISIWN 297

Query: 241 FLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYG 300
           FLGR+GGGYFSE IV+ +AYPR +A+ +AQ+++A     +A+ WPG +YV T+LVG+ YG
Sbjct: 298 FLGRIGGGYFSEIIVKDYAYPRAIALGIAQILIAIGHFNFAMAWPGTMYVGTLLVGVGYG 357

Query: 301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA------ 354
           AHWAIVPAAASELFG+K+FGALYNFLT+A+PAGSL+FSGVIASGIYD  A KQA      
Sbjct: 358 AHWAIVPAAASELFGVKNFGALYNFLTVANPAGSLVFSGVIASGIYDAEAAKQAQQRHST 417

Query: 355 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQ 414
             L   +G ++ V         C G+IC+ ++  IMAG C++A  +SLI+V+RTK VYA 
Sbjct: 418 SKLLATSGRVVSVVSEAAPALKCEGAICFFLSSLIMAGFCVVAFGLSLILVYRTKVVYAG 477

Query: 415 LYGN 418
           LYG 
Sbjct: 478 LYGK 481

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.658	0.481	0.584	3.9e-102
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.676	0.491	0.572	2e-100
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.537	0.422	0.525	2.3e-74
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.537	0.422	0.525	2.3e-74
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.533	0.376	0.354	2.6e-35
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.547	0.402	0.345	1.1e-34
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.448	0.338	0.352	7.9e-34
TAIR|locus:2027284	533	AT1G74780 [Arabidopsis thalian	0.436	0.347	0.354	1.3e-29
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.408	0.305	0.381	7.8e-28
TAIR|locus:2011241	526	AT1G18940 [Arabidopsis thalian	0.389	0.313	0.341	1.2e-26

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 3.9e-102, Sum P(3) = 3.9e-102
 Identities = 169/289 (58%), Positives = 202/289 (69%)

Query:   129 EVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAXXXXXXXXXXXXEDFTLP 188
             ++ILSEVEDEKP +VD LPASER KRIAHLQA+L QAAAEGA            EDFTL 
Sbjct:   297 DLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLT 356

Query:   189 QALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGG 248
             QAL+KAD                TVIDNLGQ+ QSLGY +T + VSMISIWNFLGR+GGG
Sbjct:   357 QALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGG 416

Query:   249 YFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPA 308
             YFSE +VR +AYPRP              +++A GWPG +Y+ T+L+GL YGAHWAIVPA
Sbjct:   417 YFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPA 476

Query:   309 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS 368
              ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA      +G++    
Sbjct:   477 TASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQA------HGSV---- 526

Query:   369 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 417
             F   +   C GSIC+ +T  IM+G CIIA ++S+I+V RTKSVY  LYG
Sbjct:   527 FDPDDALRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVYTHLYG 575

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
 Identities = 170/297 (57%), Positives = 201/297 (67%)

Query:   121 SKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAXXXXXXXXXX 180
             S + D+  E+I SEVEDEKP EVD LPA ER KRIA LQAKL QAAAEGA          
Sbjct:   294 STTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPH 353

Query:   181 XXEDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWN 240
               EDFTL QAL+KAD                TVIDNLGQ+ QSLGY +T ++VSMISIWN
Sbjct:   354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWN 413

Query:   241 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 300
             FLGR+GGGYFSE IVR +AYPRP              +++A GWPG +++ T+L+GL YG
Sbjct:   414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473

Query:   301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 360
             AHWAIVPA ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA      
Sbjct:   474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQA------ 527

Query:   361 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 417
              G++    F   +   C GSICY +T  IM+G C+IA  +S+I+V RTK VY  LYG
Sbjct:   528 QGSL----FNPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYG 580

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
 Identities = 126/240 (52%), Positives = 163/240 (67%)

Query:   183 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
             EDFTL QAL +AD                T+IDNLGQIC SLGY++T I+VS+ISI NFL
Sbjct:   313 EDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFL 372

Query:   243 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
             GRV GGYFSE I+RK + PR              L+YYAI WPG+IYV T+++G+ YGAH
Sbjct:   373 GRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTIVIGMGYGAH 432

Query:   303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 362
             WAI PA+ S++FGLKSFG+LYNF   A P GS +FSGVIAS IYDYYA KQAG       
Sbjct:   433 WAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQAG------- 485

Query:   363 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRS 422
                P +  + E+  C GS+CYS+TC +M+ LC++AMV+SL VV+RT+  Y +L+  ++++
Sbjct:   486 ---PTT--ETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRKFYLRLHHRVSKT 540

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
 Identities = 126/240 (52%), Positives = 163/240 (67%)

Query:   183 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
             EDFTL QAL +AD                T+IDNLGQIC SLGY++T I+VS+ISI NFL
Sbjct:   313 EDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFL 372

Query:   243 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
             GRV GGYFSE I+RK + PR              L+YYAI WPG+IYV T+++G+ YGAH
Sbjct:   373 GRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTIVIGMGYGAH 432

Query:   303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 362
             WAI PA+ S++FGLKSFG+LYNF   A P GS +FSGVIAS IYDYYA KQAG       
Sbjct:   433 WAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQAG------- 485

Query:   363 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRS 422
                P +  + E+  C GS+CYS+TC +M+ LC++AMV+SL VV+RT+  Y +L+  ++++
Sbjct:   486 ---PTT--ETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRKFYLRLHHRVSKT 540

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
 Identities = 84/237 (35%), Positives = 127/237 (53%)

Query:   183 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 240
             +D+T+ QAL   D                T IDNLGQI  SLGY   S+  +VS++SIWN
Sbjct:   332 DDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWN 391

Query:   241 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 300
             + GRV  G  SE  + K+ +PRP              L  A   PG +YV +V++G  +G
Sbjct:   392 YYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFG 451

Query:   301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 360
             A W ++ A  SE+FGLK +  LYNF ++ASP GS + +  +A  +YD  A KQ   L K 
Sbjct:   452 AQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGKT 511

Query:   361 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY-AQLY 416
                   V  +D     C+G+ C+ ++  I+A + +  +++S+++V RTK  Y + +Y
Sbjct:   512 R-----VEGQDLN---CIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIY 560

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
 Identities = 84/243 (34%), Positives = 125/243 (51%)

Query:   183 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 240
             ED+T+ QAL+  D                T +DNLGQI +SLGY + ++  +VS++SIWN
Sbjct:   323 EDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWN 382

Query:   241 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 300
             + GRV  G+ SE ++ K+  PRP              L  A   PG +Y+ ++L+G S+G
Sbjct:   383 YFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFG 442

Query:   301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 360
             A   ++ A  SELFGLK +  L+N   LASP GS I +  +   +YD  A KQ       
Sbjct:   443 AQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTA---- 498

Query:   361 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY-AQLYGNL 419
              G    ++ +D +  TCLGS CY +   I+A +     ++SL +  RT+  Y   +Y   
Sbjct:   499 RG----LTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKF 554

Query:   420 NRS 422
               S
Sbjct:   555 RES 557

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 7.9e-34, Sum P(3) = 7.9e-34
 Identities = 68/193 (35%), Positives = 93/193 (48%)

Query:   161 KLFQAAAEGAXXXXXXXXXXXXEDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQI 220
             ++  A AEGA            EDF   Q  +KAD                TV +NL QI
Sbjct:   314 EILLAEAEGAVKKKRKPRRG--EDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQI 371

Query:   221 CQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYY 280
               + G  DT+I + + S +NF+GR+  G  SE  VR    PR            F  L +
Sbjct:   372 GFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLPRTLWMGAAQLVMVFTFLLF 431

Query:   281 AIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 340
             A+     IYV T L+G+  G  +  + A  SELFGL+ FG  +NF+ L +P G+ IFS +
Sbjct:   432 AMAIDHTIYVATALIGICMGFQFLSI-ATISELFGLRHFGINFNFILLGNPLGATIFSAI 490

Query:   341 IASGIYDYYAEKQ 353
             +A  IYD  A+KQ
Sbjct:   491 LAGYIYDKEADKQ 503

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
 Identities = 67/189 (35%), Positives = 99/189 (52%)

Query:   183 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 240
             E+  L QA+ K                  + I+N+ QI +SL Y+   I   VS+ SIWN
Sbjct:   311 ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWN 370

Query:   241 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 300
             FLGR G GY S+A++ K  +PRP              L  A G+ G +YV +V+VG+ YG
Sbjct:   371 FLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYG 430

Query:   301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 360
             + W+++P   SELFG++  G ++N +++ASP GS IFS  +   IYD  A  +      Y
Sbjct:   431 SQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTC--Y 488

Query:   361 NGNMLPVSF 369
               +   +SF
Sbjct:   489 GSHCFRLSF 497

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 7.8e-28, P = 7.8e-28
 Identities = 66/173 (38%), Positives = 92/173 (53%)

Query:   183 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 242
             E+ T+ +A++  D                 V++N+GQI  +LGY D SI+VSM SIW F 
Sbjct:   338 EEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFF 397

Query:   243 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 302
             GR+  G  SE  ++K   PRP              L  A+  PG +Y+ +++VG+ YG  
Sbjct:   398 GRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCYGVR 457

Query:   303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 355
              AI    ASELFGLK +G +YN L L  P GS +FSG++A  +YD  A    G
Sbjct:   458 LAITVPTASELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLYDAEATPTPG 510

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 57/167 (34%), Positives = 89/167 (53%)

Query:   183 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 240
             +   L QA+   D                + I+N+ QI +SL Y    I   +++ +IWN
Sbjct:   304 KSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWN 363

Query:   241 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 300
             F+GR GGGY S+ ++ +  +PRP              L  A G+ G +Y  +++VG+ YG
Sbjct:   364 FIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVGICYG 423

Query:   301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 347
             + W+++P   SELFG+K  G +YN +++ASP GS IFS  +   IYD
Sbjct:   424 SQWSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYD 470

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017962001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (588 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	4e-15
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	4e-14
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.004

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 1   MISANET-SLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 59
            I  N+  SL+ L A+ P +V +  ++ +RP  G    + S++  FL    + + LA Y+
Sbjct: 153 AIFGNDASSLLLLNALVPLVVSLVALYFIRPCPGKVGEQRSESVVFLVFNVLSVALAVYL 212

Query: 60  LAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPV 95
           +A+ +L      +      L   +++++L+P+ +P+
Sbjct: 213 VAMSILSKSFDLSSAEYYALGAIMVLLLLVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 72.9 bits (179), Expect = 4e-14
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 180 RRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT--SIYVSMIS 237
              +D+T+ + L    F +L+ S  L + SGL +I       QSLG +D    + VS+ S
Sbjct: 191 VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISS 250

Query: 238 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL 297
           I+N  GR   G  S+ I R+      +   ++ V MA  L    +        T  LV  
Sbjct: 251 IFNGGGRPFLGALSDKIGRQKTM--SIVFGISAVGMAAMLFIPMLN-DVLFLATVALVFF 307

Query: 298 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 349
           ++G   ++ P+  S++FG  +  A Y FL  A      IF G+IAS      
Sbjct: 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIASHALTEI 358

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 184 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT------------SI 231
           DF+  + L    F +++   V+ +  GL     LG I +  G AD             + 
Sbjct: 197 DFSPGEMLRTPVFWVMYTMFVMVAAGGLMATAQLGPIAKDFGVADVPVTLLGLTMAALTF 256

Query: 232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL-LYYAIGW-PGEIY 289
            +S+  I N   R   G+ S+ I R+        M VA  +    + L    G  P    
Sbjct: 257 ALSIDRILNGFTRPFFGWISDKIGRE------NTMFVAFGIEGVGIYLLPTFGHNPVAFV 310

Query: 290 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI 336
           + + LV  ++G  +++ PA  ++ FG K        L  A    +L+
Sbjct: 311 ILSALVFFAWGEIYSLFPATCADTFGSKYAATNAGLLYTAKGTAALL 357

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 34/210 (16%)

Query: 196 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIV 255
            LLL  +  L S     ++  L    Q +     +    ++     LG + G      + 
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA-EAGLLLSLFGLGGILGALLGGLLS 235

Query: 256 RKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG 315
            +    R + +    +     LL         + V  +L+G   G  +  +   ASEL  
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295

Query: 316 LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 375
            ++ G            G  +   +             AGLL    G             
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLL-------------AGLLLDTGG------------- 329

Query: 376 TCLGSICYSITCGIMAGLCIIAMVMSLIVV 405
                  Y     I+A L ++A ++ L++ 
Sbjct: 330 -------YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 8/155 (5%)

Query: 196 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIV 255
            L L F L       L+    L      L  +   + VS  S+   LG +  GY S+   
Sbjct: 3   LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-- 60

Query: 256 RKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELF 314
               + R   + +  ++ A   L  A       + V   L+GL  GA +    A  +E F
Sbjct: 61  ----FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF 116

Query: 315 GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 349
             K  G      +     G+L+   ++   + +  
Sbjct: 117 PPKERGRALGLFSAGFGLGALL-GPLLGGLLAESL 150

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
PTZ00207	591	hypothetical protein; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.62
PRK11663	434	regulatory protein UhpC; Provisional	99.59
TIGR00893	399	2A0114 d-galactonate transporter.	99.58
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.58
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.58
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.57
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.55
PRK10504	471	putative transporter; Provisional	99.54
PRK09705	393	cynX putative cyanate transporter; Provisional	99.53
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.52
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.52
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.52
PRK11663	434	regulatory protein UhpC; Provisional	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.5
TIGR00900	365	2A0121 H+ Antiporter protein.	99.5
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.49
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.49
PRK03545	390	putative arabinose transporter; Provisional	99.49
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.49
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.48
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.48
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.48
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.48
PRK10091	382	MFS transport protein AraJ; Provisional	99.48
PRK10054	395	putative transporter; Provisional	99.47
PRK05122	399	major facilitator superfamily transporter; Provisi	99.46
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.45
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.45
TIGR00898	505	2A0119 cation transport protein.	99.45
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.45
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.45
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.44
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.44
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.44
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.43
PRK12382	392	putative transporter; Provisional	99.43
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.43
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.43
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.43
PRK10504	471	putative transporter; Provisional	99.43
PRK09952	438	shikimate transporter; Provisional	99.43
PRK03699	394	putative transporter; Provisional	99.43
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.43
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.43
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.42
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
PRK03633	381	putative MFS family transporter protein; Provision	99.41
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.41
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.41
PRK03699	394	putative transporter; Provisional	99.41
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.41
TIGR00895	398	2A0115 benzoate transport.	99.41
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.4
PRK10642	490	proline/glycine betaine transporter; Provisional	99.4
TIGR00891	405	2A0112 putative sialic acid transporter.	99.39
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.39
PRK09528	420	lacY galactoside permease; Reviewed	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.39
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.39
PRK03545	390	putative arabinose transporter; Provisional	99.38
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.38
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.38
PLN00028	476	nitrate transmembrane transporter; Provisional	99.38
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.38
PRK12307	426	putative sialic acid transporter; Provisional	99.38
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.38
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.38
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.37
PRK10489	417	enterobactin exporter EntS; Provisional	99.37
PRK10489	417	enterobactin exporter EntS; Provisional	99.37
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.37
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.37
PRK03893	496	putative sialic acid transporter; Provisional	99.36
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.36
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.36
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.35
PRK11043	401	putative transporter; Provisional	99.35
PLN00028	476	nitrate transmembrane transporter; Provisional	99.34
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.34
KOG0569	485	consensus Permease of the major facilitator superf	99.34
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.34
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.34
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.34
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.34
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.33
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.32
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.31
TIGR00900	365	2A0121 H+ Antiporter protein.	99.31
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.3
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.3
PRK12382	392	putative transporter; Provisional	99.3
PRK09705	393	cynX putative cyanate transporter; Provisional	99.3
KOG2532	466	consensus Permease of the major facilitator superf	99.29
PRK15011	393	sugar efflux transporter B; Provisional	99.29
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.29
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.28
PRK12307	426	putative sialic acid transporter; Provisional	99.28
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.28
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.28
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.28
TIGR00895	398	2A0115 benzoate transport.	99.27
PRK05122	399	major facilitator superfamily transporter; Provisi	99.26
TIGR00891	405	2A0112 putative sialic acid transporter.	99.26
PRK10091	382	MFS transport protein AraJ; Provisional	99.26
PRK03633	381	putative MFS family transporter protein; Provision	99.25
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.25
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.25
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.24
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.23
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.23
PRK15075	434	citrate-proton symporter; Provisional	99.22
PRK11010	491	ampG muropeptide transporter; Validated	99.21
PRK09528	420	lacY galactoside permease; Reviewed	99.2
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.2
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.19
PRK10642	490	proline/glycine betaine transporter; Provisional	99.19
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.18
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.18
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.18
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.18
PRK11010	491	ampG muropeptide transporter; Validated	99.18
PTZ00207	591	hypothetical protein; Provisional	99.18
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.17
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.17
PRK11902	402	ampG muropeptide transporter; Reviewed	99.16
PRK03893	496	putative sialic acid transporter; Provisional	99.15
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.15
PRK09952	438	shikimate transporter; Provisional	99.15
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.12
PRK15011	393	sugar efflux transporter B; Provisional	99.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.11
PRK10054	395	putative transporter; Provisional	99.11
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.11
PRK11902	402	ampG muropeptide transporter; Reviewed	99.11
PRK10133	438	L-fucose transporter; Provisional	99.1
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.1
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.09
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.08
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.06
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.06
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.06
PRK10133	438	L-fucose transporter; Provisional	99.06
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.06
TIGR00901	356	2A0125 AmpG-related permease.	99.06
PRK15075	434	citrate-proton symporter; Provisional	99.05
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.04
TIGR00805	633	oat sodium-independent organic anion transporter.	99.02
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.02
TIGR00898	505	2A0119 cation transport protein.	99.02
PRK09848	448	glucuronide transporter; Provisional	99.01
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.98
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.98
PRK11043	401	putative transporter; Provisional	98.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.96
TIGR00901	356	2A0125 AmpG-related permease.	98.95
PF13347	428	MFS_2: MFS/sugar transport protein	98.95
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.94
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.9
PRK09669	444	putative symporter YagG; Provisional	98.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.89
PRK10429	473	melibiose:sodium symporter; Provisional	98.88
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.87
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.87
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.85
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.84
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.83
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.81
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.81
KOG2533	495	consensus Permease of the major facilitator superf	98.8
PRK11462	460	putative transporter; Provisional	98.79
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.77
KOG0254	513	consensus Predicted transporter (major facilitator	98.75
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.73
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.73
KOG2532	466	consensus Permease of the major facilitator superf	98.71
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.7
KOG2615	451	consensus Permease of the major facilitator superf	98.69
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.66
KOG2533	495	consensus Permease of the major facilitator superf	98.65
COG2211	467	MelB Na+/melibiose symporter and related transport	98.64
KOG0254	513	consensus Predicted transporter (major facilitator	98.63
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.52
PRK09669	444	putative symporter YagG; Provisional	98.48
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.48
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.46
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.43
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.41
PF13347	428	MFS_2: MFS/sugar transport protein	98.41
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.4
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.38
KOG0569	485	consensus Permease of the major facilitator superf	98.38
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.34
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.33
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.3
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.29
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.28
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.25
PRK10429	473	melibiose:sodium symporter; Provisional	98.21
PRK11462	460	putative transporter; Provisional	98.18
PRK09848	448	glucuronide transporter; Provisional	98.15
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.13
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.07
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.06
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.04
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.0
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.95
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.94
TIGR00805	633	oat sodium-independent organic anion transporter.	97.93
COG2211	467	MelB Na+/melibiose symporter and related transport	97.9
KOG3762	618	consensus Predicted transporter [General function	97.86
KOG2563	480	consensus Permease of the major facilitator superf	97.8
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.79
COG0477	338	ProP Permeases of the major facilitator superfamil	97.77
PRK03612	521	spermidine synthase; Provisional	97.64
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.6
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.58
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.54
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.45
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.42
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.26
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.03
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.96
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.91
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.87
PF12832	77	MFS_1_like: MFS_1 like family	96.7
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.62
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.62
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.38
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.36
KOG2615	451	consensus Permease of the major facilitator superf	96.22
KOG2563	480	consensus Permease of the major facilitator superf	96.19
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.03
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.86
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.76
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.52
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.24
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.94
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.66
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.9
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.5
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.56
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.49
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.39
KOG0637	498	consensus Sucrose transporter and related proteins	92.17
KOG3810	433	consensus Micronutrient transporters (folate trans	92.04
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.0
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	91.26
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	90.98
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.82
KOG3626	735	consensus Organic anion transporter [Secondary met	89.44
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	89.31
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	88.96
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.84
KOG3626	735	consensus Organic anion transporter [Secondary met	88.3
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	86.14
KOG3762	618	consensus Predicted transporter [General function	84.43
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	80.72

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=4.5e-49  Score=413.01  Aligned_cols=346  Identities=19%  Similarity=0.286  Sum_probs=280.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhhcccCCCCcc------c-----------------CCCCchhHHHHHHHHHHHHHH
Q 014462            3 SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQV------R-----------------LSDNTSFLFTYTVCLILAAYM   59 (424)
Q Consensus         3 ~~~~~~~~llla~~p~~v~~~~~~~~r~~~~~~~~------~-----------------~~~~~~f~~~~~~~~~l~~~l   59 (424)
                      .+|.+.+++++++++.+++++++.++|.++++++.      +                 +.+.++|++++++++++++|+
T Consensus       180 ~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl  259 (591)
T PTZ00207        180 SDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFL  259 (591)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHH
Confidence            45678899999999999999999999988766531      1                 223448999999999999999


Q ss_pred             HHHHHhhcccccchHHHHHHHHHHH-HHHHhh-hhHhhhhhccCCCCCCccchhhcccccCcCCCcchhhhHhhhhcccC
Q 014462           60 LAVLLLEDLEVANQNVLTVLAVGLI-IIILLP-VTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVED  137 (424)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~v~~-~ll~~P-l~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  137 (424)
                      +++++++++.+++++.+..++++++ ++++.| +++|++.. ..+.+   +++   ++ .  ++   .+..         
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~-~~~~~---~~~---~~-~--~~---~~~~---------  317 (591)
T PTZ00207        260 PLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTF-DGKRP---HDD---SD-G--KA---KEHV---------  317 (591)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHh-ccCCc---CCC---cc-c--cc---cccc---------
Confidence            9999999999999999999999888 777889 88888861 11111   000   00 0  00   0000         


Q ss_pred             CCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhh-HHHhhh-cCCCCCCCCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHh
Q 014462          138 EKPPEVDSLPASERQKRIAHLQAKLFQAAAEGA-VRVKRR-KGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVID  215 (424)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~  215 (424)
                      +...+.                     +..+++ ...+.+ ..|++++  +++|.+++.|||+++++++|+.+++++++|
T Consensus       318 ~~~~~~---------------------~~~~~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~  374 (591)
T PTZ00207        318 EAGEEV---------------------SAAEDKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIF  374 (591)
T ss_pred             cccccc---------------------cccccccccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeee
Confidence            000000                     000000 001112 3377665  999999999999999999999999999999


Q ss_pred             cHHHHHHHc-CC-Cch--hH-HHHHHHHHhhhhhhhhhhhhhhhhhccc----CchhHHHHHHHHHHHHHHHHHHhchh-
Q 014462          216 NLGQICQSL-GY-ADT--SI-YVSMISIWNFLGRVGGGYFSEAIVRKFA----YPRPVAMAVAQVVMAFALLYYAIGWP-  285 (424)
Q Consensus       216 ~l~~i~~~~-g~-s~~--~~-~~sl~si~~~~gr~~~G~lsd~~g~k~~----~~r~~~l~~~~~~~~~~~ll~~~~~~-  285 (424)
                      |++||.+++ |+ ++.  ++ +++++++||++||+++|+++ .+-+|+.    +|||+++++.++ +.+++++++...+ 
T Consensus       375 N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~  452 (591)
T PTZ00207        375 NARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPK  452 (591)
T ss_pred             cHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCc
Confidence            999999999 88 333  34 89999999999999999997 6655554    999999999998 8888888776655 


Q ss_pred             HHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCC
Q 014462          286 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  365 (424)
Q Consensus       286 ~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~  365 (424)
                      ..+|++++++|+|+|++|++.+++++|+|| |++|++||+..++.++|+++|+..++|.+||++++|+            
T Consensus       453 ~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~------------  519 (591)
T PTZ00207        453 AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL------------  519 (591)
T ss_pred             cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC------------
Confidence            789999999999999999999999999999 9999999999999999999999999999999999653            


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014462          366 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL  415 (424)
Q Consensus       366 ~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~~~~~  415 (424)
                             ++.+|+|++||+.+|++++++|++|++++++++.|+|++|++.
T Consensus       520 -------~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~  562 (591)
T PTZ00207        520 -------GQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKA  562 (591)
T ss_pred             -------CCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHH
Confidence                   3569999999999999999999999999999999999999865

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.62  E-value=3e-13  Score=139.63  Aligned_cols=194  Identities=15%  Similarity=0.149  Sum_probs=137.3

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++.+|.+++..++.....+...+++|.++++ .|++....  +.++..+++.+|++++|+++||+++++...   ..
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~---~~  325 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA---TG  325 (452)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch---HH
Confidence            6788999998888888777777778899999977 68876543  667888999999999999999996543221   11


Q ss_pred             HHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      .....+..++.+++..   .+....++...+.|.+...........+.|.+|++.+|++.|+.+....+|+.+.+|.+.|
T Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        326 VFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            1112222222222211   1223333444555554433333445567899999999999999998888887654799999


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN  418 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~~~~~~~~  418 (424)
                      .++|..+                                |+..|++++++++++++...++.+.+||..+++..|
T Consensus       406 ~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (452)
T PRK11273        406 YTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQK  448 (452)
T ss_pred             HHHHHhc--------------------------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhh
Confidence            9999887                                999999999999999888887766666656555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.59  E-value=3.7e-13  Score=138.26  Aligned_cols=186  Identities=18%  Similarity=0.148  Sum_probs=128.8

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++.+|.+.+..++......++.+++|++++ ++|++..+.  ..+.+.+++.+|++++|+++||+.++++-+.....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            667889999888777776666677789999985 479987654  78888999999999999999999544322111111


Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      .++.++..++.+.+...+...++...++.|++...........++|.+|++++|+..|+.++...+|+.+ +|.+.|.+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~p~~~g~l~  397 (434)
T PRK11663        319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL-SGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH-hcccHHHHH
Confidence            2222222222221222222223333344444333333345567889999999999999999999999997 999999999


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          347 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  408 (424)
Q Consensus       347 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~  408 (424)
                      |..+                                |+.+|++.+++++++++..+...+++
T Consensus       398 ~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        398 EIWH--------------------------------WTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             Hhcc--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9876                                99999999998888876655444333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.58  E-value=8.6e-13  Score=130.94  Aligned_cols=188  Identities=14%  Similarity=0.090  Sum_probs=134.0

Q ss_pred             CCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          184 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       184 ~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      ..+.++.++++++|.+.+..++.......+..++|++.++ +|.+..+.  +.+...+++.++++..|+++||+++|+..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  284 (399)
T TIGR00893       205 KYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS  284 (399)
T ss_pred             ccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            3456778999999999988888888888888889988865 78876543  77888899999999999999999988622


Q ss_pred             c--hhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHH
Q 014462          261 P--RPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  338 (424)
Q Consensus       261 ~--r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~  338 (424)
                      .  ......++.++.++..............+...+.+.+..+..+...++++|.+|.+++|+.+++.+....+|+.+ +
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~  363 (399)
T TIGR00893       285 LVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV-G  363 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhh-h
Confidence            0  000111111111111111111112222333333333333377889999999999999999999999999999997 8


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          339 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       339 ~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                      |.+.|.++|..+                               .|+..|.+.+++++++.++.++
T Consensus       364 ~~i~g~l~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       364 PIVIGAIAATTG-------------------------------SFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hHHhhhhccCCC-------------------------------chhHHHHHHHHHHHHHHHHHHH
Confidence            999999998766                               2888999998888887766544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.58  E-value=2.1e-13  Score=141.40  Aligned_cols=191  Identities=15%  Similarity=0.087  Sum_probs=133.0

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++.+|.+.+..++......+...++|.++++ +|++..++  ..+...+++.+|++.+|+++||+++|+..    ..
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~----~~  329 (467)
T PRK09556        254 VLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL----VA  329 (467)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH----HH
Confidence            7889999999999888888777888899998865 89987654  77778899999999999999999987543    11


Q ss_pred             HHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHH-HHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLIFSGVIASG  344 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~l-gs~l~~~~l~g~  344 (424)
                      ...........+.+.. .+...+++..++.|++..+........+.|.+|.+++|++.|+.+....+ |+.+ +|.+.|.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~-~~~~~G~  408 (467)
T PRK09556        330 CIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF-AKVGLGM  408 (467)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH-HhhhHHH
Confidence            1111111111112222 23344556666777544333334456777999999999999999999887 5565 8999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      +.|.+....              +      ..=+....|+..|.+++++++++++..+.+.
T Consensus       409 i~~~~~~g~--------------~------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        409 IADPTKNGT--------------P------IFGYTLTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             Hhccccccc--------------c------cccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999321000              0      0000011399999999999999888877665

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.58  E-value=9.3e-13  Score=142.93  Aligned_cols=137  Identities=12%  Similarity=0.131  Sum_probs=106.9

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHH
Q 014462          233 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAAS  311 (424)
Q Consensus       233 ~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~s  311 (424)
                      ..+.+++..+|.+++|+++||+|||+.+      .++.++.+++.+++.. .+...+++..++.|++.++.++...++++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l------~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a  674 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRML------AGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV  674 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566688899999999999999998754      5555555555555443 23445566667888888889999999999


Q ss_pred             HhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHH
Q 014462          312 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA  391 (424)
Q Consensus       312 e~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a  391 (424)
                      |+||++.||+++|+.++...+|+++ +|+++|.+.+. .                                ...+|++.+
T Consensus       675 El~Pt~~Rgta~Gi~~~~~rlGaii-gp~i~g~L~~~-~--------------------------------~~~pf~i~a  720 (742)
T TIGR01299       675 ELYPSDKRATAFGFLNALCKAAAVL-GILIFGSFVGI-T--------------------------------KAAPILFAS  720 (742)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-h--------------------------------hHHHHHHHH
Confidence            9999999999999999999999998 99999988763 2                                457788888


Q ss_pred             HHHHHHHHHHHHHhhhhhH
Q 014462          392 GLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       392 ~~~~~~~~l~~~l~~~~~~  410 (424)
                      ++.++++++.+++ .+|++
T Consensus       721 ~~lll~~ll~~~L-PET~~  738 (742)
T TIGR01299       721 AALACGGLLALKL-PDTRG  738 (742)
T ss_pred             HHHHHHHHHHHhC-CCCcc
Confidence            8777777776655 45543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.57  E-value=7.6e-14  Score=138.23  Aligned_cols=174  Identities=26%  Similarity=0.317  Sum_probs=137.8

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +.++.++++++|.+....++..........+.+++.+++|.+....  +.++.++.+.++++..|+++||++||+..   
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~---  273 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM---  273 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---
Confidence            4667889999998888777766666666667777888888876543  78889999999999999999999987654   


Q ss_pred             HHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAIGW---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~~~---~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                         .++.++++++.+++...+   ...++...++.|++.|..++..+..++|.+|.+++|+.+|+.+....+|+.+ +|.
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~  349 (377)
T TIGR00890       274 ---SIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF-GGL  349 (377)
T ss_pred             ---hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH-HHH
Confidence               444555555554443222   2233455677888889888888999999999999999999999999999997 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 014462          341 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM  398 (424)
Q Consensus       341 l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~  398 (424)
                      +.|.+.|..+                                |+.+|.+.++++++++
T Consensus       350 ~~g~l~~~~g--------------------------------~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       350 IASHALTEIG--------------------------------FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhhhc--------------------------------hhhHHHHHHHHHHHhc
Confidence            9999998776                                9999999888777654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=2e-13  Score=136.55  Aligned_cols=174  Identities=14%  Similarity=0.175  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      ...+.+..+.|+.....+....-+|++.+++|.|...+  .++.++.+..++.++...+.||+.||+.+      ...+.
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL------l~~l~   86 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLL------LGLLA   86 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH------HHHHH
Confidence            34577778888888888888999999999999998765  99999999999999999999999988755      66667


Q ss_pred             HHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          272 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       272 ~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      ++.++.++.+ ..+...+.++.++.|++.|.+|++..++++++.|+++++++.++++++..++..+ |.+++.++-|..|
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~-GvPLGt~ig~~~G  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL-GVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH-hccHHHHHHHHhh
Confidence            7778887766 4567789999999999999999999999999999999999999999999999997 9999999999988


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          351 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                                      ||.+|++.+++++++.+..+....
T Consensus       166 --------------------------------WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 --------------------------------WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                            999999999999998877776655

>PRK10504 putative transporter; Provisional

Probab=99.54  E-value=3.8e-13  Score=139.19  Aligned_cols=176  Identities=16%  Similarity=0.240  Sum_probs=144.0

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      .+.+|.++.+.++.......+...+|.+.+++|.+..+.  ..+...++..++.+.+|+++||+|||+..      ..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~   82 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF------FTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH------HHHH
Confidence            346788888888887777777888999999999987653  67788888999999999999999998654      3444


Q ss_pred             HHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          271 VVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  349 (424)
Q Consensus       271 ~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~  349 (424)
                      ++++++.++.. ..+.+.+++..++.|++.|..++...+.+.|.+|.+++++++++......+|..+ +|.+.|.+.|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~g~l~~~~  161 (471)
T PRK10504         83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL-GPALGGLLVEYA  161 (471)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhc
Confidence            45555544433 3456677888999999999999999999999999999999999999999999987 999999998876


Q ss_pred             hhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          350 AEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                      +                                |++.|.+...++.++.++......+
T Consensus       162 g--------------------------------w~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        162 S--------------------------------WHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             c--------------------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5                                9999999988888777766655433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.53  E-value=5.3e-12  Score=128.01  Aligned_cols=183  Identities=11%  Similarity=0.029  Sum_probs=136.5

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  267 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~  267 (424)
                      .++++++|.+.+.+++.......+.+++|++.+++|.+..+.  +.+++++++.+|++..|++.||+++|+..      .
T Consensus       201 ~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~------~  274 (393)
T PRK09705        201 VVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL------M  274 (393)
T ss_pred             cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH------H
Confidence            456778888877777666666778889999998899887644  88899999999999999999999987543      3


Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          268 VAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       268 ~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg-~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      ++..+.+++.+++.........+..++.|++.|..++.....+.+.++ .+++|+.+|+.+....+++.+ +|.+.|++.
T Consensus       275 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-gp~~~G~l~  353 (393)
T PRK09705        275 LALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGL-APWFSGVLR  353 (393)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            344444444443321111111123456688888887777777777775 568999999999999999987 999999999


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          347 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       347 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      |..|                               .|...|.+.+++++++.+..+.+..+++.
T Consensus       354 ~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        354 SISG-------------------------------NYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHhC-------------------------------CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9876                               28899999998888887777666555543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.52  E-value=4.1e-13  Score=140.29  Aligned_cols=182  Identities=22%  Similarity=0.294  Sum_probs=156.1

Q ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          188 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       188 ~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      +++++++.|+.+.+...+...........+|.+.+++|+++..+  ++++.++.+.+||++.|+++|+...++.    ..
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~----~~  367 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL----VL  367 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH----HH
Confidence            57999999999999999998888888889999999999998765  9999999999999999999999974332    34


Q ss_pred             HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                      ..++.+..+++.+... ..+.+.++...+++|++.|...+..+.++.++.|.+++..++|+..+...++.++ ||+++|.
T Consensus       368 ~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~-gpPiag~  446 (509)
T KOG2504|consen  368 FLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV-GPPIAGL  446 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc-Cccccee
Confidence            4555666666654444 3456788999999999999999999999999999999999999999999999998 9999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      ++|..+                               .|..+|+..+...+++..+.++..
T Consensus       447 ~~d~tg-------------------------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  447 LYDITG-------------------------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeccC-------------------------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            999887                               289999999998888887666655

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.52  E-value=3.7e-12  Score=131.80  Aligned_cols=154  Identities=12%  Similarity=0.097  Sum_probs=122.1

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      +.++++++|...+..++...........+|++.++ +|+++.+.  ......++..+++++.|++.||+++|+..     
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-----  324 (485)
T TIGR00711       250 RLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV-----  324 (485)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH-----
Confidence            37778888887777777666667777788999877 79887654  67778899999999999999999987543     


Q ss_pred             HHHHHHHHHHHHHHHH--h---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYA--I---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~--~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                       .++..+++++.+++.  .   .+.+.++...++.|++.|..+++....+.+.+|++++|.+.++.++...+|+.+ |+.
T Consensus       325 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~  402 (485)
T TIGR00711       325 -TIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI-GTA  402 (485)
T ss_pred             -HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH-HHH
Confidence             455556666655544  1   123455667888999999988888888889999999999999999999999998 999


Q ss_pred             HHHHHHhhh
Q 014462          341 IASGIYDYY  349 (424)
Q Consensus       341 l~g~l~d~~  349 (424)
                      +.|.++++.
T Consensus       403 i~g~~~~~~  411 (485)
T TIGR00711       403 LITTILTNR  411 (485)
T ss_pred             HHHHHHHHH
Confidence            999888753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.52  E-value=6.8e-12  Score=131.20  Aligned_cols=152  Identities=11%  Similarity=-0.027  Sum_probs=120.7

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++.++......++...+..+....+|++.|. +|+++.++  .....+++..++.++.|++.||+++|+.+      
T Consensus       255 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------  328 (495)
T PRK14995        255 LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVA------  328 (495)
T ss_pred             HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------
Confidence            7778888877777777766666777788888877 79987655  77788899999999999999999986533      


Q ss_pred             HHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      ..+.++++++.+++..    .+.+..+...++.|++.|...+.....+.+..|.+++|.+.++.++...+|+.+ |+.+.
T Consensus       329 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~-G~ai~  407 (495)
T PRK14995        329 TGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGL-GIAIF  407 (495)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHH-HHHHH
Confidence            4455555555444321    233445667888999999998888888999999999999999999999999997 99999


Q ss_pred             HHHHhh
Q 014462          343 SGIYDY  348 (424)
Q Consensus       343 g~l~d~  348 (424)
                      |.+++.
T Consensus       408 g~i~~~  413 (495)
T PRK14995        408 GLLLSR  413 (495)
T ss_pred             HHHHHH
Confidence            988775

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.51  E-value=8.9e-13  Score=135.43  Aligned_cols=171  Identities=11%  Similarity=0.154  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      ..++..++.+++.......+...+|++.+++|.+..+.  +.+...++..++++..|+++||+|+|+.+      .++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~------~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM------GIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH------HHHHH
Confidence            34445555555555545556667899999999987654  88899999999999999999999998755      55566


Q ss_pred             HHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          272 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       272 ~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +.+++.+++. ..+.+.+++..++.|++.|..++....++.++|+++++|+..++.+.+..+|+.+ ++.+.|.+.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL-IPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc
Confidence            6666655554 3445667777888899999988999999999999999999999999999999997 8999999988766


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          351 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                                                      |+++|++.+.++++..+...+
T Consensus       176 --------------------------------w~~~f~~~~i~~~~~~~~~~~  196 (434)
T PRK11663        176 --------------------------------WRYGMMIAGIIAIVVGLFLCW  196 (434)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence                                            999999988877655444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=4.1e-13  Score=138.96  Aligned_cols=201  Identities=16%  Similarity=0.151  Sum_probs=145.4

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      +.++++.+|......++...+......+++++.+++|++....  +.++.++++.++++++|+++||...++.  |...+
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~  313 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH--VQYLF  313 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH--HHHHH
Confidence            5788999998888777766666666778899998899986654  7888899999999999999997422111  11122


Q ss_pred             HHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      ..+.++.+++.++.. ..+.+.+++..++.|+++|..++...+++.|.+|.+++|+.+++.++...+|+.+ +|.++|.+
T Consensus       314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-gp~i~G~l  392 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI-GPPLAGRL  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc-cccceeee
Confidence            222333333333332 3445667778889999999999999999999999999999999999999999998 99999999


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHH-HHhhhcc
Q 014462          346 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM----SLIVVHRTKSVYA-QLYGNLN  420 (424)
Q Consensus       346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l----~~~l~~~~~~~~~-~~~~~~~  420 (424)
                      +|..+                               .|+..|++.+++.+++.+.    .++.++++||.++ .+.+.+-
T Consensus       393 ~~~~g-------------------------------~~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (455)
T TIGR00892       393 VDATK-------------------------------NYKYIFYASGSIVVSAGLFLAIGNYINYRLLAKEQKAALEREGA  441 (455)
T ss_pred             ehhcC-------------------------------CcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            98765                               1888888888777766542    3333444455443 4555444


Q ss_pred             cCC
Q 014462          421 RSN  423 (424)
Q Consensus       421 ~~~  423 (424)
                      ||+
T Consensus       442 ~~~  444 (455)
T TIGR00892       442 RDK  444 (455)
T ss_pred             ccc
Confidence            443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.50  E-value=4.8e-12  Score=128.10  Aligned_cols=171  Identities=14%  Similarity=0.092  Sum_probs=128.1

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      +.++...++.......+.+++|++.++.|++....  ..+...+++.+|++..|+++||+++|+..      .+..+.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~~  296 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV------LLIYAGIL  296 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHH
Confidence            34444444444555566778999999999886543  77788899999999999999999987644      22333333


Q ss_pred             HHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014462          275 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  353 (424)
Q Consensus       275 ~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~  353 (424)
                      ++.+.+. ..+.+.+++..++.|++.++..+..++++.|.+|.+++|+..|+.+....+|+.+ +|.++|.++|..+   
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~~---  372 (406)
T PRK11551        297 ASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMA-GPLLAGQLLALGR---  372 (406)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHH-HhhhHhhhhccCC---
Confidence            3433333 3344556667778888888888889999999999999999999999999999997 9999999998754   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          354 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                                  .|...+.+.+.+.+++.++++.+.
T Consensus       373 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        373 ----------------------------STVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             ----------------------------chHHHHHHHHHHHHHHHHHHHHHh
Confidence                                        177778777777777766665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.50  E-value=8e-13  Score=130.48  Aligned_cols=170  Identities=11%  Similarity=-0.013  Sum_probs=132.4

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      |.++.+.++...........+|.+..+.+.+..+.  +.+...++..++.+.+|+++||+|||+.+      ..+.++.+
T Consensus         2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~------~~~~~~~~   75 (365)
T TIGR00900         2 RLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM------IGADLIRA   75 (365)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH------HHHHHHHH
Confidence            44555555555555555566788888888887654  88889999999999999999999998754      44444444


Q ss_pred             HHHHHHH-hc-----hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          275 FALLYYA-IG-----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       275 ~~~ll~~-~~-----~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      ++.+++. ..     +.+.+++..++.|++.+...+...++++|+++.+++++.+++.+....+|..+ +|.+++.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~  154 (365)
T TIGR00900        76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV-GPGIGGLMYAT  154 (365)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4333322 22     56678888999999999999999999999999999999999999999999997 99999999887


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      .+                                |++.|++.+..++++.+....+.
T Consensus       155 ~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~  179 (365)
T TIGR00900       155 LG--------------------------------IKWAIWVDAVGFAISALLIVSVR  179 (365)
T ss_pred             hh--------------------------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence            76                                99999988887776665554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.49  E-value=4.7e-12  Score=130.17  Aligned_cols=186  Identities=16%  Similarity=0.155  Sum_probs=130.4

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++.+|.+.+..++.....+++..++|+++++ .|++....  +.+++++.+.+|++++|+++||+++++...   ..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~---~~  323 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA---TG  323 (438)
T ss_pred             HccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH---HH
Confidence            6788899998887777766667777899999987 68886543  677888999999999999999997654331   11


Q ss_pred             HHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      ........++.+++..   .+.+..+...++.|++..+........+.|.+|.+++|++.|+.+....+|+.+.+|.+.|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G  403 (438)
T TIGR00712       324 VFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  403 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence            1111111122222221   1223333344445554333222333567899999999999999998888876434899999


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      .+.|..+                                |..+|++++++++++.+..+.+.++.||
T Consensus       404 ~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       404 YTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHhcc--------------------------------chHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999776                                9999999999999988888877766553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2.1e-12  Score=128.43  Aligned_cols=190  Identities=16%  Similarity=0.180  Sum_probs=147.2

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      +++|+..|++.++.++....-+++.+|.|.++.+ .|++..++  ..+++=++...|.+++||+|||+-+.|+.|--   
T Consensus       248 VL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~---  324 (448)
T COG2271         248 VLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA---  324 (448)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH---
Confidence            7889999999999999999999999999999866 79987654  88999999999999999999999755554322   


Q ss_pred             HHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHH-hhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLS-YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~---~~~~~l~~~~~l~G~~-~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      .+.++.+.++...+..   .+.....+..+++|+. +|-+ -+.-..+.|..|++--|++.|+......+++..++....
T Consensus       325 ~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq-mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~  403 (448)
T COG2271         325 LIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ-MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL  403 (448)
T ss_pred             HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH-HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc
Confidence            2222333333333322   2335556677888876 5555 677888899999999999999999999994444588888


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014462          343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL  415 (424)
Q Consensus       343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~~~~~  415 (424)
                      |++.|.+|                                |...|+++.+.++++.++.+.+..++++.+++.
T Consensus       404 g~i~d~~g--------------------------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~~  444 (448)
T COG2271         404 GYIADTWG--------------------------------WDGGFIVLSIAALLAILLLLPVWNAEERKIRDE  444 (448)
T ss_pred             eeeEecCC--------------------------------CcchHHHHHHHHHHHHHHHHHHHhhcchhhhhh
Confidence            98888866                                999999999999988888777776666655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.49  E-value=1.5e-12  Score=131.56  Aligned_cols=170  Identities=11%  Similarity=0.121  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          196 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       196 fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      +|.+.+..++...........+|++.+++|.+..+.  ..+...++..++.+..|++.||+|||+.+      ..+.++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~   84 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL------IGLFVLF   84 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH------HHHHHHH
Confidence            444444443332222223345789999999988765  78888889999999999999999998755      5556666


Q ss_pred             HHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 014462          274 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  352 (424)
Q Consensus       274 ~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~  352 (424)
                      +++.++.. ..+.+.+++..++.|++.+..++...+++.++++.++|+++.|+...+..+|..+ +|.+.+.+.+..+  
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i-g~~l~~~l~~~~g--  161 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL-GLPLGRVIGQYLG--  161 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH-HhhHHHHHHHHhc--
Confidence            66655554 4567778888899999999888999999999999999999999999999999997 8999999887766  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          353 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                                                    |+++|++.++++++..+.....
T Consensus       162 ------------------------------w~~~f~~~~~~~~l~~~~~~~~  183 (390)
T PRK03545        162 ------------------------------WRTTFLAIGGGALITLLLLIKL  183 (390)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence                                          9999999999887776555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.49  E-value=2.1e-12  Score=131.14  Aligned_cols=151  Identities=13%  Similarity=0.179  Sum_probs=126.3

Q ss_pred             HHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHH
Q 014462          211 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGE  287 (424)
Q Consensus       211 ~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~  287 (424)
                      +.....+|++.+++|.+..+.  .++...++..++++..|.++||+|||+.+      ..+.++.+++.++.. ..+.+.
T Consensus        37 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~  110 (394)
T PRK10213         37 FLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV------ILFAVLLTLSCLLVSFANSFSL  110 (394)
T ss_pred             HHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH------HHHHHHHHHHHHHHHHHChHHH
Confidence            344456888889999988754  77889999999999999999999998755      555666666655544 455778


Q ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 014462          288 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  367 (424)
Q Consensus       288 l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~  367 (424)
                      +++..++.|++.|..++...++++|+++.|+++++.++...+..+|..+ +|.+++.+.+..+                 
T Consensus       111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~~~l~~~~g-----------------  172 (394)
T PRK10213        111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI-AAPLGSFLGELIG-----------------  172 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC-----------------
Confidence            8899999999999999999999999999999999999999999999997 9999999988766                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 014462          368 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  400 (424)
Q Consensus       368 ~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l  400 (424)
                                     |++.|++.+.++++..+.
T Consensus       173 ---------------w~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        173 ---------------WRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHH
Confidence                           999999988776655433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.48  E-value=4.6e-13  Score=131.66  Aligned_cols=164  Identities=18%  Similarity=0.246  Sum_probs=131.4

Q ss_pred             HHHHHhhhhHHHHHhcHH-HHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 014462          201 FSLVLASGSGLTVIDNLG-QICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL  277 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~-~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~  277 (424)
                      ++.++.......+...+| .+.+++|.+..+.  +.+...++..++.+..|+++||+|||+.+      .++.++.+++.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~   76 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL------IIGLLLFALGS   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE------eehhhhhhhHH
Confidence            344444444444556677 6667789887654  88889999999999999999999988744      56666666664


Q ss_pred             HHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 014462          278 LYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL  356 (424)
Q Consensus       278 ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~  356 (424)
                      ++... .+.+.+++..++.|++.+..++....++.|.++.+++++..++......+|..+ +|.+++.+.+..+      
T Consensus        77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~------  149 (352)
T PF07690_consen   77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL-GPLLGGFLISYFG------  149 (352)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHCH------
T ss_pred             HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc-ccchhhhhhhccc------
Confidence            44333 555578889999999999999999999999999999999999999999999997 8999999887776      


Q ss_pred             hhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          357 LWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                                                |+++|++.+++++++.++...
T Consensus       150 --------------------------~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen  150 --------------------------WRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             --------------------------HCCHHHHHHHHHHHHHHHHHC
T ss_pred             --------------------------cccccccccchhhhhhhhHhh
Confidence                                      999999999999988775433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.48  E-value=2.1e-12  Score=129.00  Aligned_cols=156  Identities=11%  Similarity=0.138  Sum_probs=128.9

Q ss_pred             HHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHH
Q 014462          211 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGE  287 (424)
Q Consensus       211 ~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~  287 (424)
                      ..+...+|.+.+++|.++.+.  ..+...++..++.+..|+++||+|||+.+      ..+.++.+++.++.. ..+.+.
T Consensus        22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~   95 (385)
T TIGR00710        22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL------LLGLFIFALSSLGLALSNNIET   95 (385)
T ss_pred             HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHHHHHHHHHHHccHHH
Confidence            344557888889999987654  88889999999999999999999988654      455556666655544 445667


Q ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 014462          288 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  367 (424)
Q Consensus       288 l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~  367 (424)
                      +++..++.|++.+...+...+++.|.++.+++++.+++.+....+|+.+ ++.+.+.+.+..+                 
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~-----------------  157 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV-APLLGGYILVWLS-----------------  157 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-----------------
Confidence            7888999999999999999999999999999999999999999999987 8999998888766                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          368 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       368 ~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                     |+.+|++.++++++..+...+..
T Consensus       158 ---------------~~~~~~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       158 ---------------WHAIFAFLSLAGILLSALIFFIL  180 (385)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence                           99999999888887776665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.48  E-value=1.9e-12  Score=132.21  Aligned_cols=177  Identities=12%  Similarity=0.060  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      +.+++.+++..........-.|.+.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+.+      .++.++.+
T Consensus        11 ~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~------~~~~~~~~   84 (412)
T TIGR02332        11 IFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI------AGIMVLWG   84 (412)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH------HHHHHHHH
Confidence            34444444434334444445666778899987765  88899999999999999999999998754      55566666


Q ss_pred             HHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014462          275 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  353 (424)
Q Consensus       275 ~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~  353 (424)
                      ++.++.+ ..+.+.+++..++.|++.|..++....+++|++|+++||+..++.+.+.++|+.+ ++.+++.+.+..+.  
T Consensus        85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~--  161 (412)
T TIGR02332        85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL-GLILSGYILALDGL--  161 (412)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCC--
Confidence            6665554 3556788899999999999999888899999999999999999999999999997 89999988753210  


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          354 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                              .+...||++|++.++.+++.+++..++.+
T Consensus       162 ------------------------~~~~gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       162 ------------------------MALKGWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             ------------------------CCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence                                    00012999999988887766555544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.48  E-value=6.8e-13  Score=131.92  Aligned_cols=186  Identities=16%  Similarity=0.140  Sum_probs=148.1

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCc
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  261 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~  261 (424)
                      ..++.+.++++.|.+.+.++...|+..++.+++|+++++ +|.+..++  +..+..+.+.+.|+.+|+++||+|.+|.. 
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~-  287 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT-  287 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH-
Confidence            457778899999999999999999999999999999977 89987664  88899999999999999999999987755 


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-h-------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHH
Q 014462          262 RPVAMAVAQVVMAFALLYYA-I-------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG  333 (424)
Q Consensus       262 r~~~l~~~~~~~~~~~ll~~-~-------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lg  333 (424)
                           .+....++++..... .       .+....+...+..+++.|.........++.+| +++.|...|+..+...+|
T Consensus       288 -----~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lG  361 (417)
T COG2223         288 -----LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLG  361 (417)
T ss_pred             -----HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhcccc
Confidence                 333334444333332 1       12233444455666777777777778888888 468899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014462          334 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  409 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~  409 (424)
                      ++. =|...|..+|..+.                               |...|+++..+++++.++...++.|+|
T Consensus       362 Gf~-lp~~~g~~~~~tg~-------------------------------~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         362 GFF-LPLAFGVSLDLTGS-------------------------------YTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             ccc-hhHHHHHHHHhccc-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            987 49999999998872                               899999999999999888887776654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.48  E-value=1.9e-12  Score=130.57  Aligned_cols=171  Identities=11%  Similarity=0.086  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      +.+|.+.+..++...........+|.+.+++|.+..+.  ..+...++..++++.+|+++||+|||+.+      .++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL------LFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH------HHHHH
Confidence            45677777766666666667778899999999987654  88999999999999999999999998755      55566


Q ss_pred             HHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          272 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       272 ~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +.+++.++.. ..+.+.+++..++.|++.|...+....++.++++++++++..++...+..+|..+ ++.+++.+.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL-GIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH-hccHHHHHhhhcc
Confidence            6666666555 4567788889999999999988888899999999999999999999999999997 8999998887665


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          351 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                                                      ||++|++.+.++++..+....
T Consensus       156 --------------------------------wr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        156 --------------------------------WRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence                                            999999999887776654443

>PRK10054 putative transporter; Provisional

Probab=99.47  E-value=2.9e-12  Score=130.08  Aligned_cols=173  Identities=10%  Similarity=0.044  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  269 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~  269 (424)
                      ++++|.+.+..++.......+...++.+.+ ++|++..+.  .++...+...++++..|+++||+|+|+.+      .++
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~------~~~   79 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM------LLA   79 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH------HHH
Confidence            345788888888877777777777888775 589998765  77888899999999999999999998654      444


Q ss_pred             HHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          270 QVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       270 ~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      .++..++.+++. ..+.+.+++...+.|.+.+...+...+..+|.++.+++++++++.+....+|..+ +|.+.+.+++ 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i-gp~l~~~l~~-  157 (395)
T PRK10054         80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV-GPPLGTLLVM-  157 (395)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence            444455554444 3344455556667777777777788899999999999999999999999999997 9999998874 


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      .+                                |+.+|++.+++++++.++..+..
T Consensus       158 ~g--------------------------------~~~~f~~~~~~~~i~~i~~~~~~  182 (395)
T PRK10054        158 QS--------------------------------INLPFWLAAICSAFPLVFIQIWV  182 (395)
T ss_pred             hc--------------------------------cCcHHHHHHHHHHHHHHHHHHHH
Confidence            34                                88999988888887766554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.46  E-value=4.2e-12  Score=128.34  Aligned_cols=160  Identities=13%  Similarity=0.132  Sum_probs=123.7

Q ss_pred             HHHHhcHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHH
Q 014462          211 LTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIY  289 (424)
Q Consensus       211 ~~~~~~l~~i~~~~g~s~~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~  289 (424)
                      .....+++.+.++.|.+......+.+.++..++++..|++.||+++|+..      ..+..+++++.+++. ..+.+.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  306 (399)
T PRK05122        233 GTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA------IVSLLVEILGLLLLWLAPSPWMAL  306 (399)
T ss_pred             HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHhccHHHHH
Confidence            34455677777777775545567788889999999999999999877533      444445555544443 34445566


Q ss_pred             HHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 014462          290 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  369 (424)
Q Consensus       290 ~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      +..++.|++.+..++.....+.+.+|++++|+.+++.+....+|..+ ++.+.|.+.|..+                   
T Consensus       307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g-------------------  366 (399)
T PRK05122        307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TGPLAGLVASWFG-------------------  366 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-------------------
Confidence            77888999999888888888889999999999999999999999987 7889999988766                   


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014462          370 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  409 (424)
Q Consensus       370 ~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~  409 (424)
                                   |+.+|++.+++++++.++...+.++++
T Consensus       367 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        367 -------------YPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence                         999999999988888777766554433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.45  E-value=2.5e-13  Score=128.86  Aligned_cols=95  Identities=32%  Similarity=0.643  Sum_probs=88.2

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHhhcccCCC--CcccCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHH
Q 014462            1 MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGH--RQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTV   78 (424)
Q Consensus         1 ~~~~~~~~~~llla~~p~~v~~~~~~~~r~~~~~--~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~~~   78 (424)
                      +|++|+++|++|++++|.++++++++++|++|++  .++++.|.++|...+++++++++|+++.++++++.+++++.+..
T Consensus       154 ~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~  233 (250)
T PF06813_consen  154 FFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVI  233 (250)
T ss_pred             HcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHH
Confidence            5789999999999999999999999999998763  44567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHhh
Q 014462           79 LAVGLIIIILLPVTIPV   95 (424)
Q Consensus        79 ~~~v~~~ll~~Pl~i~~   95 (424)
                      .+++++++|++|++||+
T Consensus       234 ~~~il~llL~~Pl~i~~  250 (250)
T PF06813_consen  234 FAVILLLLLLLPLAIPV  250 (250)
T ss_pred             HHHHHHHHHHhhhhccC
Confidence            99999999999999885

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.45  E-value=4.1e-11  Score=120.95  Aligned_cols=156  Identities=10%  Similarity=-0.019  Sum_probs=128.6

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      .++.+|++++|.+.+..++..++...+..+.|++.+++|.+....  ..++..+...++.+.+|++.||+++|+.+    
T Consensus       198 ~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l----  273 (382)
T TIGR00902       198 FIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL----  273 (382)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH----
Confidence            456889999999988888877777778888999999999987654  66677888888889999999999877544    


Q ss_pred             HHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHH-HHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGVIA  342 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~-~~~~lgs~l~~~~l~  342 (424)
                        .++.+...+...++. ..+.+.+++..++.|+++|..++....++++. |.+++++.+++.+ +...+|..+ ++.++
T Consensus       274 --~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~-g~~~~  349 (382)
T TIGR00902       274 --LISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI-FTAFA  349 (382)
T ss_pred             --HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              566666666666655 44556778889999999999999999999988 8889999999976 567899997 89999


Q ss_pred             HHHHhhhh
Q 014462          343 SGIYDYYA  350 (424)
Q Consensus       343 g~l~d~~~  350 (424)
                      |.++|+.+
T Consensus       350 G~l~~~~g  357 (382)
T TIGR00902       350 GFIYPTLG  357 (382)
T ss_pred             HHHHHhcc
Confidence            99999886

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.45  E-value=7.1e-12  Score=127.91  Aligned_cols=177  Identities=14%  Similarity=0.111  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      +.+|...+..+........+..+.|.+.++.|++....  ......+++.++++++|+++||++||+..      .++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~------~~~~~  357 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL------LIGAA  357 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHH
Confidence            34444444444443334445567788888899887443  77788889999999999999999987644      33444


Q ss_pred             HHHHHHHHHH---h--ch------hHHHHHHHHHHHHHhhhhH-hHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 014462          272 VMAFALLYYA---I--GW------PGEIYVTTVLVGLSYGAHW-AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       272 ~~~~~~ll~~---~--~~------~~~l~~~~~l~G~~~G~~~-~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                      +++++.+++.   .  ..      .........+.+.+.+..+ +....++.|.+|++++|+..++.++...+|+.+ +|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i-~~  436 (481)
T TIGR00879       358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI-VG  436 (481)
T ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH-HH
Confidence            4444444332   1  11      2222333334444444333 555677799999999999999999999999998 89


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014462          340 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  409 (424)
Q Consensus       340 ~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~  409 (424)
                      .+.|.+.|+.+                                |+..|++.++++++++++.+.+.++++
T Consensus       437 ~~~~~~~~~~~--------------------------------~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       437 FLFPTMLESIG--------------------------------VGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHhcC--------------------------------ccceehhHHHHHHHHHHHHheecccCC
Confidence            99999998766                                888999999999988888776655544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.45  E-value=1.5e-11  Score=128.38  Aligned_cols=179  Identities=12%  Similarity=0.085  Sum_probs=122.8

Q ss_pred             CCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          184 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       184 ~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      ..+++++++++.+|...+..++...........++....+.+.+.. ....+.++....++++.+++.||+|||+..   
T Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~dr~grr~~~---  388 (505)
T TIGR00898       313 QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIY-LDLFISGLVELPAKLITLLLIDRLGRRYTM---  388 (505)
T ss_pred             CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH---
Confidence            3578889999998877665544433322222223333334444422 234456777888999999999999988644   


Q ss_pred             HHHHHHHHHHHHHHHHHHh-ch--hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAI-GW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~-~~--~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                         .+..++.+++.+++.. .+  .....+..++.+++.+..++..+.+++|++|++.|+++.|+.++...+|+++ +|.
T Consensus       389 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i-~p~  464 (505)
T TIGR00898       389 ---AASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPF  464 (505)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHH-HhH
Confidence               4445555555444432 22  2344555666677888888899999999999999999999999999999997 899


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          341 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       341 l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                      +.+ + +..+                                +..++.+.+++++++.++.+++
T Consensus       465 i~~-~-~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       465 LVY-L-GEKW--------------------------------LFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHH-H-HHHH--------------------------------HhhHHHHHHHHHHHHHHHHHcC
Confidence            888 3 3333                                5677888888887777666554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.45  E-value=6.6e-12  Score=128.29  Aligned_cols=157  Identities=13%  Similarity=0.094  Sum_probs=126.2

Q ss_pred             HHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhH
Q 014462          210 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPG  286 (424)
Q Consensus       210 ~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~  286 (424)
                      ...+...+|++.+++|.+....  .++++.++..++++.+|+++||+|||+.+      ..+.++.+++.++.. ..+.+
T Consensus        32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l------~~~~~~~~~~~~~~~~a~~~~  105 (413)
T PRK15403         32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL------ITGALIFTLACAATLFTTSMT  105 (413)
T ss_pred             HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH------HHHHHHHHHHHHHHHHcCCHH
Confidence            3445557888889999887644  88899999999999999999999998754      445555555555544 45567


Q ss_pred             HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCC
Q 014462          287 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLP  366 (424)
Q Consensus       287 ~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~  366 (424)
                      .+++..++.|++.+...+...+++.|.++.+++++..++.+....+|..+ +|.+.+.+.+..+                
T Consensus       106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~lg~~l~~~~g----------------  168 (413)
T PRK15403        106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII-GPLSGAALMHFVH----------------  168 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC----------------
Confidence            78889999999988777777888999999999999999999999999987 8998888877655                


Q ss_pred             cccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          367 VSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       367 ~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                      |++.|++.+++.+++.+..+...
T Consensus       169 ----------------w~~~f~~~~~~~~i~~~~~~~~l  191 (413)
T PRK15403        169 ----------------WKVLFAIIAVMGLIAFVGLLLAM  191 (413)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence                            99999999998888766554433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.45  E-value=3.1e-12  Score=130.96  Aligned_cols=190  Identities=12%  Similarity=0.104  Sum_probs=141.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCc--------h--hHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD--------T--SIYVSMISIWNFLGRVGGGYFSEAIVR  256 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~--------~--~~~~sl~si~~~~gr~~~G~lsd~~g~  256 (424)
                      .++.+|++++|.+++..++............+.+.++.|.+.        .  ....++..+...++++..|+++||+++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~  280 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI  280 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            345788888888777776655444344455667777777543        1  337788888999999999999999998


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHh-c-h---hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHH-HHH
Q 014462          257 KFAYPRPVAMAVAQVVMAFALLYYAI-G-W---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LAS  330 (424)
Q Consensus       257 k~~~~r~~~l~~~~~~~~~~~ll~~~-~-~---~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~-~~~  330 (424)
                      |+.+      .++.++.+++..++.. . +   ...+++..++.|++.+...+....+++|.+|++++|+.+|+.+ ...
T Consensus       281 r~~l------~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~  354 (418)
T TIGR00889       281 KKVM------LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN  354 (418)
T ss_pred             HHHH------HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            8654      5555555555444332 1 1   2345667888999999888888899999999999999999997 578


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014462          331 PAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  409 (424)
Q Consensus       331 ~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~  409 (424)
                      .+|+.+ ||.+.|.++|+.+....                          ..|+.+|.+.+++++++.++..++.++++
T Consensus       355 ~lg~~i-Gp~l~G~l~~~~g~~~~--------------------------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       355 GFGSLL-GYILSGVMVEKMFAYGT--------------------------FDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             hhHHHH-HHHHHHHHHHHhccccC--------------------------CchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            899987 99999999998762110                          02999999999998888888877776553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=1.3e-12  Score=129.67  Aligned_cols=157  Identities=18%  Similarity=0.169  Sum_probs=129.3

Q ss_pred             HHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhH
Q 014462          210 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPG  286 (424)
Q Consensus       210 ~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~  286 (424)
                      ...+....|++.+++|.+..+.  +.+...++..++.+..|+++||+|||+.+      ..+.++.+++..++. ..+.+
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~~   83 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAGAYV   83 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHcCHH
Confidence            3445556777888899987654  88899999999999999999999998866      455555555555544 34667


Q ss_pred             HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCC
Q 014462          287 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLP  366 (424)
Q Consensus       287 ~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~  366 (424)
                      .+++..++.|++.|..++....+++|++|.++|++..++......+|..+ ++.+.+.+.+..+                
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~----------------  146 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII-GGPLVGWILIHFS----------------  146 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHhCC----------------
Confidence            78889999999999999999999999999999999999999999999997 8999998887766                


Q ss_pred             cccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          367 VSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       367 ~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                      |++.|++.++++++..++...+.
T Consensus       147 ----------------~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893       147 ----------------WQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             ----------------chHHHHHHHHHHHHHHHHhhhee
Confidence                            99999999888877666655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.44  E-value=2.1e-12  Score=133.61  Aligned_cols=169  Identities=12%  Similarity=0.148  Sum_probs=136.1

Q ss_pred             HHHHHHHhhhhHHHHHhcHHHHHHHcCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHH
Q 014462          199 LFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFA  276 (424)
Q Consensus       199 l~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~  276 (424)
                      +..+.++.......+...+|.+.+++|.+..+  ...+.+.++..++.+..|+++||+|||+.+      .++.++.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~   80 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF------LISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH------HHHHHHHHHH
Confidence            33444444444444556789999999988654  388899999999999999999999998754      5566666666


Q ss_pred             HHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 014462          277 LLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG  355 (424)
Q Consensus       277 ~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~  355 (424)
                      .++.. ..+...+++..++.|++.|...+...+++.|.+|+++|+++.++......+|..+ +|.++|.+.++.+     
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~-----  154 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL-GPTLGGWIIENYH-----  154 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh-hhccHhHhccCcC-----
Confidence            66555 3556778889999999999999999999999999999999999999999999997 9999999888665     


Q ss_pred             hhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          356 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                                 |++.|++.+.+++++.++..+..+
T Consensus       155 ---------------------------w~~~f~~~~~~~~~~~~~~~~~~~  178 (485)
T TIGR00711       155 ---------------------------WRWIFLINVPIGIIVVVVAFFILP  178 (485)
T ss_pred             ---------------------------ceehhhhhhHHHHHHHHHHHHHcC
Confidence                                       999999988888777766655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.44  E-value=5.9e-12  Score=131.66  Aligned_cols=171  Identities=11%  Similarity=0.070  Sum_probs=136.5

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      ..+.++.++.......+...+|++.+++|.+..+  +..+.+.++..++.+..|+++||+|||+.+      ..+.++..
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l------~~~~~~~~   82 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL------MLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHH
Confidence            3444455555555555566789999999987643  488889999999999999999999998765      56666666


Q ss_pred             HHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhh-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 014462          275 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  352 (424)
Q Consensus       275 ~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~f-g~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~  352 (424)
                      ++.++.. ..+.+.++++.++.|++.|...+.....+.+.+ ++++|+++.|+......+|..+ ||.++|.+.+..+  
T Consensus        83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~-gp~lgg~l~~~~g--  159 (495)
T PRK14995         83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF-GPLVGGILLEHFY--  159 (495)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC--
Confidence            6666655 456778888999999999998887777787776 6789999999999999999997 9999999998766  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          353 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                                    ||+.|++...++++..++.....+
T Consensus       160 ------------------------------wr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        160 ------------------------------WGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             ------------------------------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                          999999998888887766655543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.44  E-value=3.7e-12  Score=133.35  Aligned_cols=173  Identities=13%  Similarity=0.072  Sum_probs=108.2

Q ss_pred             hhHHHHHhcHHHHHHHcCCCchh------------H--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          208 GSGLTVIDNLGQICQSLGYADTS------------I--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       208 ~~~~~~~~~l~~i~~~~g~s~~~------------~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      ...+++..++|.+.++.|++...            .  ...+..++..+|.+++++++||+|||+..      .++.+++
T Consensus       302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l------~~~~~~~  375 (502)
T TIGR00887       302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ------LMGFFIL  375 (502)
T ss_pred             HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH------HHHHHHH
Confidence            34455666789999888886421            1  23444556777999999999999998644      3334444


Q ss_pred             HHHHHHHHh--c--h-hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          274 AFALLYYAI--G--W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       274 ~~~~ll~~~--~--~-~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      +++..++..  .  + ...+....+...++..+..+..+.+.+|+||++.||++.++.+....+|+++ ++.+.+.+.|.
T Consensus       376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~-~~~~~~~l~~~  454 (502)
T TIGR00887       376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII-GQFGFLYLAQH  454 (502)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHH-HHHHhhhhhcc
Confidence            433333221  1  1 1111111111122222344567778899999999999999999999999997 89999999886


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      .+..++     +                 ++...+..+|++.+++++++.+..+ +..+||+
T Consensus       455 ~~~~~~-----~-----------------~~~~~~~~~~~i~~~~~~~~~i~~~-~lpEt~~  493 (502)
T TIGR00887       455 GDPTKG-----Y-----------------PTGIWMGHVLEIFALFMFLGILFTL-LIPETKG  493 (502)
T ss_pred             cccccc-----c-----------------cccccchHHHHHHHHHHHHHHHHhe-EeccCCC
Confidence            531100     0                 0000156788888888888766553 3345544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.43  E-value=4.8e-12  Score=137.41  Aligned_cols=185  Identities=18%  Similarity=0.146  Sum_probs=132.3

Q ss_pred             hhHHHHHHHHHHHHhhhh-HH---HHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          192 MKADFLLLFFSLVLASGS-GL---TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       192 ~~~~fwll~~~~~~~~~~-~~---~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      ..+..|.+++..+++... ++   .+...+|.+.+++|.+....  +.+...++.++|.+++|+++||+|||+.+     
T Consensus       161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l-----  235 (742)
T TIGR01299       161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL-----  235 (742)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-----
Confidence            355566555444333322 11   23345777778899887543  78889999999999999999999998755     


Q ss_pred             HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                       .+++++.+++.++.+ ..+.+.+++..++.|++.|+..++.+++++|++|.++||..++++.++..+|.++ ++.++..
T Consensus       236 -ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~~la~~  313 (742)
T TIGR01299       236 -LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AAAMAWA  313 (742)
T ss_pred             -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence             444444444444444 3456778889999999999999999999999999999999999999999999987 7887777


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~  402 (424)
                      +....+.+..                .   ...+....||+.|++.+..++++.++.+
T Consensus       314 il~~~G~~~~----------------~---g~~~~~~gWR~l~~i~~lp~ll~ll~~~  352 (742)
T TIGR01299       314 IIPHYGWSFQ----------------M---GSAYQFHSWRVFVIVCAFPCVFAIGALT  352 (742)
T ss_pred             HHHhccchhc----------------c---ccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            6655442110                0   0112334599999888777666654443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12382 putative transporter; Provisional

Probab=99.43  E-value=1.5e-11  Score=124.08  Aligned_cols=154  Identities=12%  Similarity=0.049  Sum_probs=122.4

Q ss_pred             HHHhcHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHH
Q 014462          212 TVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYV  290 (424)
Q Consensus       212 ~~~~~l~~i~~~~g~s~~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~  290 (424)
                      .+..+.+.+.++.|++......+..+++..++++..|++.||+++|+..      ..+..+++++.+++. ..+...+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  307 (392)
T PRK12382        234 VIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA------IVSLLVETVGLLLLWLAPTAWVALA  307 (392)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh------HHHHHHHHHHHHHHHHcccHHHHHH
Confidence            3445667777877876655566677888899999999999999988765      444455555554443 334455667


Q ss_pred             HHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccC
Q 014462          291 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR  370 (424)
Q Consensus       291 ~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  370 (424)
                      ..++.|++++...+...+.+.+.++++++|+.+++.++...+|+.+ +|.+.|.+.|..+                    
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~~~g~l~~~~g--------------------  366 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV-SGPLAGMLATSFG--------------------  366 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC--------------------
Confidence            7888899999888888889999999999999999999999999997 9999999999877                    


Q ss_pred             CCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          371 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       371 ~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                                  |+..|.+.+++.+++.++.+..
T Consensus       367 ------------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        367 ------------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             ------------chHHHHHHHHHHHHHHHHHHhh
Confidence                        9999999999888887766543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.43  E-value=2.6e-11  Score=125.40  Aligned_cols=193  Identities=13%  Similarity=0.086  Sum_probs=136.5

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCc
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  261 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~  261 (424)
                      ..+++.++++.+|.+.+..++.......+..++|.++++ +|++..+.  +.++..+++.+++++.|+++||+++|+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~  331 (465)
T TIGR00894       252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS  331 (465)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            357889999999999999988888888888899999865 78887554  677889999999999999999998776554


Q ss_pred             hhHH----HHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHH
Q 014462          262 RPVA----MAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  335 (424)
Q Consensus       262 r~~~----l~~~~~~~~~~~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~  335 (424)
                      |+..    ..++..+.++..+....  .......+...+.+.+.+...+.......+..| +..|...++.++...+|+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~  410 (465)
T TIGR00894       332 LTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGL  410 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHH
Confidence            4322    12221111111111111  122333344455555555555555555566665 5899999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          336 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  408 (424)
Q Consensus       336 l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~  408 (424)
                      + +|.+.|.+.|.....                             .|..+|.+.+++++++.++...+....
T Consensus       411 i-~p~l~g~~~~~~~~~-----------------------------~~~~~f~~~~~~~~i~~i~~~~~~~~~  453 (465)
T TIGR00894       411 I-ASTLAGNILSQDSKN-----------------------------VWLIVFLIMAFVNILCVIFYLIFGSAE  453 (465)
T ss_pred             H-HHHhhheeeCCCCch-----------------------------HHHHHHHHHHHHHHHHHHHeeeeecce
Confidence            8 899999887754210                             299999999999999887776554333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.43  E-value=8.7e-12  Score=125.85  Aligned_cols=169  Identities=14%  Similarity=0.127  Sum_probs=132.7

Q ss_pred             HHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 014462          200 FFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL  277 (424)
Q Consensus       200 ~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~  277 (424)
                      +...+.+..+...+...+|++.+++|.+..+.  ..+...++..++.+..|+++||+|||+.+      ..+.++.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~i~~   82 (392)
T PRK10473          9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA------IPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH------HHHHHHHHHHH
Confidence            33344444444455678999999999987654  77888899999999999999999988644      45555666665


Q ss_pred             HHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 014462          278 LYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL  356 (424)
Q Consensus       278 ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~  356 (424)
                      +++. ..+.+.+++..++.|++.+..++...+++.|.++.++|++..++.+....+|..+ +|.+++.+.+..+      
T Consensus        83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~i~~~l~~~~g------  155 (392)
T PRK10473         83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL-APVLGHLIMLKFP------  155 (392)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcC------
Confidence            5544 3445667778889999999999999999999999999999999999999999886 8988888776655      


Q ss_pred             hhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          357 LWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                                                |+..|++.++++++..++.....++
T Consensus       156 --------------------------~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        156 --------------------------WQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             --------------------------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                                      9999999998888777766554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.43  E-value=3.3e-12  Score=132.98  Aligned_cols=169  Identities=17%  Similarity=0.234  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHH---cCCCchhH--HHHHHHHHhhhhhhhhhhhhhh-hhhcccCchhHHHHH
Q 014462          195 DFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMAV  268 (424)
Q Consensus       195 ~fwll~~~~~~~~~~~~~~~~~l~~i~~~---~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~-~g~k~~~~r~~~l~~  268 (424)
                      .+|.+++..++-..+.+++..++|.++++   +|++..++  +++.+.+...++++.+|+++|| +|||+.+      .+
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l------~~   84 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM------VL   84 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH------HH
Confidence            46777778887777788888899999865   68887654  8889999999999999999999 7998765      66


Q ss_pred             HHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcch---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          269 AQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS---FGALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       269 ~~~~~~~~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~---~g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                      +.++.+++.+++... +.+.++++.++.|++.|...+...+.+++.++.++   ++.++++.+.+..+|+.+ ||.+.|.
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i-g~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI-SPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH-HHHHHHH
Confidence            677777777766543 35566778888999999999999999999998764   888999999999999997 9999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~  402 (424)
                      +.+..+                                |+..|.+.++.++++.+..+
T Consensus       164 l~~~~g--------------------------------~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       164 IAENYG--------------------------------YHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHhcC--------------------------------hHHHHHHHHHHHHHHHHHHH
Confidence            988766                                99999998876666554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10504 putative transporter; Provisional

Probab=99.43  E-value=7e-11  Score=122.25  Aligned_cols=154  Identities=10%  Similarity=0.020  Sum_probs=118.0

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      +++++.++......++............|++.+. +|.++...  ......+...+++++.|++.||+++|+.+      
T Consensus       257 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~------  330 (471)
T PRK10504        257 LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL------  330 (471)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------
Confidence            7788888888777777666555555677888875 88887654  66677788888899999999999987654      


Q ss_pred             HHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      ..+.++++++.+++..    .+...+.+..++.|++.|..++.....+.+.+|.+.+|..+++.++...+|+.+ |+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i~  409 (471)
T PRK10504        331 VATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI-GVTIA  409 (471)
T ss_pred             HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH-HHHHH
Confidence            4444444444443332    122234456677788889888899999999999999999999999999999997 99999


Q ss_pred             HHHHhhhh
Q 014462          343 SGIYDYYA  350 (424)
Q Consensus       343 g~l~d~~~  350 (424)
                      |.+.+..+
T Consensus       410 g~ll~~~g  417 (471)
T PRK10504        410 GLLLGLFG  417 (471)
T ss_pred             HHHHHHhh
Confidence            99988776

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=1.1e-10  Score=120.17  Aligned_cols=178  Identities=12%  Similarity=0.108  Sum_probs=123.2

Q ss_pred             hhhhHHHHHHHH-HHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          190 ALMKADFLLLFF-SLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       190 ~l~~~~fwll~~-~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      .+++++.|...+ ..++.....+....++|.+.++ +|++....  ...+.++.++++.++.|+++||++||+..     
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-----  319 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY-----  319 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence            556667776544 3444445556666788887754 78876543  44456777888999999999999988644     


Q ss_pred             HHHHHHHHHHHHHHH--H--hch-hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHH-HHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYY--A--IGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA-SPAGSLIFSG  339 (424)
Q Consensus       266 l~~~~~~~~~~~ll~--~--~~~-~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~-~~lgs~l~~~  339 (424)
                       ..+.++.+++.+.+  .  ..+ ...+.+..++.+++.+..++..+++++|.||.+.|+++.++.+.. ..+|+.+ +|
T Consensus       320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~-~p  397 (438)
T PRK09952        320 -ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF-TP  397 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH-HH
Confidence             22222222222211  1  112 233344556668888888888999999999999999999996544 5588886 89


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          340 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       340 ~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                      .+.|.++|..+.                              .|...+...+++++++.+..+.+
T Consensus       398 ~i~g~l~~~~~~------------------------------~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        398 FIAAALVTYFGG------------------------------SWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHhcCC------------------------------CchHHHHHHHHHHHHHHHHHHHc
Confidence            999999986541                              18888888888888887776654

>PRK03699 putative transporter; Provisional

Probab=99.43  E-value=1.2e-11  Score=125.15  Aligned_cols=178  Identities=16%  Similarity=0.159  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  269 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~  269 (424)
                      ++.+|.+.+..++.......+.+++|.++++ +|++..+.  +.+.+.++..+|+++.|+++||+++|+..      ...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l------~~~  277 (394)
T PRK03699        204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL------TVL  277 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH------HHH
Confidence            5677888888777777777788899999965 79987654  78888999999999999999999987643      222


Q ss_pred             HHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          270 QVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       270 ~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      ..+.++...++. ..+...+.+..++.|++.+..++...+...+..+ ++.+...+.......+|+.+ +|.+.|.++|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i-~p~~~G~l~~~  355 (394)
T PRK03699        278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTML-TFVVTSPIVAH  355 (394)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHHH
Confidence            223333333332 2344455566778898888888888888888775 55688899999999999997 99999999998


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      .+                                ++.+|++.+++++++.++.+.+.+-.|+
T Consensus       356 ~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (394)
T PRK03699        356 FG--------------------------------LQAALLTANGLYAVVFVMCILLGFVSKH  385 (394)
T ss_pred             hC--------------------------------chhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            76                                8889999998888887665555443333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.43  E-value=2.4e-12  Score=128.13  Aligned_cols=171  Identities=15%  Similarity=0.157  Sum_probs=141.6

Q ss_pred             HHHHHHHHHhhhhHHH----HHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLT----VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       197 wll~~~~~~~~~~~~~----~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      |-++++.++++.+.+.    +...+|.+.++.|+|.++.  +.+.+++...++...+|.++||..+|+-+      .+++
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm------~~gL  101 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM------AFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee------hHHH
Confidence            4555556666555544    3445788889999998876  89999999999999999999999998765      7888


Q ss_pred             HHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 014462          271 VVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA--SGIYD  347 (424)
Q Consensus       271 ~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~--g~l~d  347 (424)
                      ++.++..+++.+ .+...+.+..++-|+.-|..|++...++..+|++++||+.+++-+++.++|+.+ -|.+.  +.+.+
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la~~~~  180 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHHHHHh
Confidence            888888888774 455677788889999999999999999999999999999999999999999998 68888  77776


Q ss_pred             hhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          348 YYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      +.+                                ||..|++-++++++-.+..+.+.+
T Consensus       181 ~~~--------------------------------w~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         181 HGG--------------------------------WRAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             ccc--------------------------------hhHHHHHHHHHHHHHHHHHHHHhC
Confidence            655                                999999999988877666665543

>TIGR00897 2A0118 polyol permease family

Probab=99.43  E-value=1.6e-11  Score=124.84  Aligned_cols=181  Identities=14%  Similarity=0.099  Sum_probs=134.1

Q ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          188 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       188 ~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      ++.++++.+|...+..++......+..+++|.+.+++|++..+.  +.+...+++.+|++..|+++||++||+...  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~--~~  293 (402)
T TIGR00897       216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR--WF  293 (402)
T ss_pred             HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH--HH
Confidence            34788999998888887777777777888999998899987654  667788999999999999999999876430  01


Q ss_pred             HHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~---~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      ..++..+..+......   ..+.+.+++..++.|++.+...+ ....+++.. ++++|+++|+.+....+|+.+ +|.+.
T Consensus       294 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~-gp~i~  370 (402)
T TIGR00897       294 GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFL-APAIA  370 (402)
T ss_pred             HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHH-HHHHH
Confidence            1111111111111111   12344556677888888877644 455667765 568999999999999999997 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      |.++|..+                                +..+|++.+++.+++.++..+++
T Consensus       371 g~l~~~~g--------------------------------~~~~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       371 VLFIGFFG--------------------------------AIGVVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             HHHHhhcc--------------------------------hHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999877                                88999999998888887776653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.42  E-value=8.1e-12  Score=130.92  Aligned_cols=173  Identities=15%  Similarity=0.181  Sum_probs=132.4

Q ss_pred             hhhhH-HHHHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhh-hhhcccCchhH
Q 014462          190 ALMKA-DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPV  264 (424)
Q Consensus       190 ~l~~~-~fwll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~-~g~k~~~~r~~  264 (424)
                      .++++ .+|.++...++...+.+.+..+++.++ +++|++..+.  ..+..........+++|+++|| +|||+.+    
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~----   91 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI----   91 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH----
Confidence            45666 489999888888888888888898887 5589987654  4444444555556789999999 5998755    


Q ss_pred             HHHHHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcch--hhHHHHHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~~~--~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~--~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                        .++.++++++.+++...  ....+++..++.|++.|...+...+++.++||.++  ++.++++.+++..+|+.+ +|.
T Consensus        92 --~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~-gp~  168 (500)
T PRK09584         92 --MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF-SML  168 (500)
T ss_pred             --HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH-HHH
Confidence              56666666666665432  33456677788999999888888899999998653  556889999999999997 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 014462          341 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  401 (424)
Q Consensus       341 l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~  401 (424)
                      +.|++.|..+                                |++.|.+.++..+++.+..
T Consensus       169 i~g~l~~~~g--------------------------------~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        169 ATPWLAAKYG--------------------------------WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHHHhhC--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence            9999998776                                9999999887666655443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=6.9e-12  Score=124.19  Aligned_cols=163  Identities=14%  Similarity=0.209  Sum_probs=128.0

Q ss_pred             HHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH
Q 014462          203 LVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  280 (424)
Q Consensus       203 ~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~  280 (424)
                      ..+..+..+.....+|.+.+++|.+..+.  ..+...++..++++.+|+++||+|||+.+      .++.++.+++.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~   85 (377)
T TIGR00890        12 MCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFY   85 (377)
T ss_pred             HHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHH
Confidence            33333444455567888889999987764  88999999999999999999999999766      55566666666655


Q ss_pred             H-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 014462          281 A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWK  359 (424)
Q Consensus       281 ~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~  359 (424)
                      + ..+.+.+++..++.|++.|..++.....+.+.++ ++|+++.++...+..+|+.+ ++.+.+.+.+..+         
T Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---------  154 (377)
T TIGR00890        86 AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI-LSPLITSVINLEG---------  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH-HHHHHHHHHhccc---------
Confidence            5 3456677788889999999888888888899996 67999999999999999987 5667777666554         


Q ss_pred             ccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          360 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       360 ~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                             |++.|++.++++++.++..+.+.
T Consensus       155 -----------------------~~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       155 -----------------------VPAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHHHhe
Confidence                                   99999999998888776665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.41  E-value=1.8e-11  Score=123.34  Aligned_cols=175  Identities=15%  Similarity=0.140  Sum_probs=128.2

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      .+.++.++++.+|......++.........+++|.+.++.|.+....  +.++..+.+.++++..|++.||+++|+.+  
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l--  268 (381)
T PRK03633        191 TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL--  268 (381)
T ss_pred             CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH--
Confidence            45677888888886654443333333344556888888888886543  77888899999999999999999987543  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                          ..+..++.++.+.+.  .....+...++.|++.+...+...+.+.|..++++.+...+..++...+|+.+ +|.+.
T Consensus       269 ----~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~i-gp~~~  341 (381)
T PRK03633        269 ----RVQVFVVILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLL-GPSFT  341 (381)
T ss_pred             ----HHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence                334444444433332  12233445667777777777888888899998888888888888899999997 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 014462          343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  400 (424)
Q Consensus       343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l  400 (424)
                      |.+.|..+                                +++.|.+.+.+.+++.+.
T Consensus       342 G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        342 AMLMQNYS--------------------------------DNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHhC--------------------------------ccHHHHHHHHHHHHHHHH
Confidence            99999876                                889999988877665443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.41  E-value=1.1e-11  Score=121.24  Aligned_cols=170  Identities=22%  Similarity=0.286  Sum_probs=137.7

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      |.+....++............+.+.++.|.+..+.  ..+...++..++.+..|+++||++||+.+      .++..+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~------~~~~~~~~   75 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL------LLGLLLFA   75 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh------HHHHHHHH
Confidence            44445555555555556667888888888887654  88889999999999999999999998754      56666666


Q ss_pred             HHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014462          275 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  353 (424)
Q Consensus       275 ~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~  353 (424)
                      ++.+.+. ..+.+.+++..++.|++.+..++...+++.|++++|+|++..++......+|+.+ ++.+++.+.|..+   
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---  151 (352)
T cd06174          76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG---  151 (352)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhh---
Confidence            6665544 3456678888999999999999999999999999999999999999999999997 8999999988766   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          354 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                                   |+..|++.+.+.+++.+....+.
T Consensus       152 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~  174 (352)
T cd06174         152 -----------------------------WRWLFLILAILGLLLALLLLFLL  174 (352)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                                         89999998888887776655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.41  E-value=2.3e-10  Score=118.95  Aligned_cols=187  Identities=18%  Similarity=0.226  Sum_probs=143.7

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      ++++..+.++.....+++++..-+..+++.....+.+ ++|++..+.  +..+..+.+++|.++.|++.||+|.|..  |
T Consensus       273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--~  350 (477)
T PF11700_consen  273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--R  350 (477)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--H
Confidence            4556667778788777877766555556655666665 599998775  6677789999999999999999998821  1


Q ss_pred             hHHHHHHHHHHHHHHHHHH--------hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA--------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGS  334 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~--------~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs  334 (424)
                      .+...+ .....++...+.        ..+.+.+++..++.|++.|..++..-++.+++.|+.+.+..+|+..+.....+
T Consensus       351 ~l~~~l-~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss  429 (477)
T PF11700_consen  351 TLLISL-ILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS  429 (477)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            111111 111122222222        45567899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          335 LIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       335 ~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                      .+ ||.+.|.+.|..++                               .|..+..+.++.++++++...+..+
T Consensus       430 ~l-GPll~g~i~~~tg~-------------------------------~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  430 WL-GPLLFGLITDATGS-------------------------------QRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HH-HHHHHHHHHHHhCC-------------------------------chhHHHHHHHHHHHHHHHHhhccch
Confidence            98 99999999998872                               7889999999999888777554433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.41  E-value=2.1e-11  Score=123.45  Aligned_cols=151  Identities=17%  Similarity=0.116  Sum_probs=120.3

Q ss_pred             HhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHH
Q 014462          214 IDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYV  290 (424)
Q Consensus       214 ~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~  290 (424)
                      ....|.+.+++|.++.+.  ..+...++..++.+..|+++||+|||+.+      ..+.++..++.++.. ..+.+.+++
T Consensus        35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  108 (406)
T PRK11551         35 GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGLFSLATAQAWDFPSLLV  108 (406)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHHH
Confidence            345678888899987654  88889999999999999999999998765      444444445444433 455667788


Q ss_pred             HHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccC
Q 014462          291 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR  370 (424)
Q Consensus       291 ~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  370 (424)
                      ..++.|++.|...+...+++.|.+++++++++.++.+....+|..+ ++.+.+.+.+..+                    
T Consensus       109 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--------------------  167 (406)
T PRK11551        109 ARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA--------------------  167 (406)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccccC--------------------
Confidence            8999999999999999999999999999999999999999999987 8888777766544                    


Q ss_pred             CCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          371 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       371 ~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                                  |+..|++.+++.++..++...
T Consensus       168 ------------~~~~~~~~~~~~~~~~~~~~~  188 (406)
T PRK11551        168 ------------WRHIFYVGGVGPLLLVPLLMR  188 (406)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHH
Confidence                        999999888766665544443

>PRK03699 putative transporter; Provisional

Probab=99.41  E-value=1.4e-11  Score=124.84  Aligned_cols=171  Identities=12%  Similarity=0.105  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      +-+|..++.+++........-..+|++.+++|++..+.  ..+...++..++.+.+|++.||+|||+.+      ..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~------~~~~~   80 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL------IFGFA   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHH
Confidence            44566666666665555556667899999999987654  78888999999999999999999998754      44555


Q ss_pred             HHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          272 VMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       272 ~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +.+++.++... .+.+.+++..++.|++.|...+.....+.|.++.++++...++.+....+|+.+ +|.+.+.+.+...
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~  159 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc
Confidence            55555555443 456677888899999999888888999999999999999999998888999887 7988888765432


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 014462          351 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~  402 (424)
                                                     .||+.|.+.+.++++..++.+
T Consensus       160 -------------------------------gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        160 -------------------------------EWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             -------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence                                           199999998887776655443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.41  E-value=7.5e-12  Score=130.11  Aligned_cols=170  Identities=16%  Similarity=0.224  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhh-hhcccCchhHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAV  268 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~-g~k~~~~r~~~l~~  268 (424)
                      .+.+|.++...++...+.+++...+|.++++ +|+++.++  +.+.+.....++.+.+|+++||+ ||||.+      .+
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i------li   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV------ML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH------HH
Confidence            3456888877777778888888899998765 79987654  77788888899999999999999 988755      66


Q ss_pred             HHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          269 AQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       269 ~~~~~~~~~ll~~~~--~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~--~~g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                      +.++++++++++...  ....+++...+.+++.|...+...++++|.||++  +|++++++.+....+|+.+ +|.+.|+
T Consensus        82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i-ap~l~g~  160 (493)
T PRK15462         82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII-APIACGY  160 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH-HHHHHHH
Confidence            777777776665432  2234555666667778887787889999999876  6899999999999999997 9999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  401 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~  401 (424)
                      +.+..+                                |+..|.+.+...+++.+..
T Consensus       161 L~~~~G--------------------------------w~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        161 AQEEYS--------------------------------WAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHhhhC--------------------------------hHHHHHHHHHHHHHHHHHH
Confidence            987766                                9999998776555554443

>TIGR00895 2A0115 benzoate transport

Probab=99.41  E-value=7.3e-12  Score=125.10  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=124.3

Q ss_pred             HHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhH
Q 014462          210 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPG  286 (424)
Q Consensus       210 ~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~  286 (424)
                      .......+|.+.+++|.+..+.  +.+...++..++.+..|+++||++||+.+      ..+.++.+++.+++. ..+.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~  106 (398)
T TIGR00895        33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL------LWSILLFSVFTLLCALATNVT  106 (398)
T ss_pred             HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHccchH
Confidence            3344556788888899987654  77888899999999999999999988654      445555555555444 34556


Q ss_pred             HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCC
Q 014462          287 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLP  366 (424)
Q Consensus       287 ~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~  366 (424)
                      .+++..++.|++.|..++...++++|.++.+++++..++...+..+|+.+ ++.+.|.+.+..+                
T Consensus       107 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g----------------  169 (398)
T TIGR00895       107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV-GGFLAGWLIPVFG----------------  169 (398)
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH-HHHHHHHHhhccc----------------
Confidence            67788899999999999999999999999999999999999999999997 8999999887665                


Q ss_pred             cccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          367 VSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       367 ~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                      |+..|++.+.++++..++.....
T Consensus       170 ----------------~~~~~~~~~~~~~~~~~~~~~~~  192 (398)
T TIGR00895       170 ----------------WRSLFYVGGIAPLLLLLLLMRFL  192 (398)
T ss_pred             ----------------ceeehhhhhhHHHHHHHHHHHhC
Confidence                            88888888766666555544433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.40  E-value=2e-11  Score=123.36  Aligned_cols=170  Identities=9%  Similarity=0.105  Sum_probs=131.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      +......++.......+...+|++.+++|.+..+.  ..+...++..++.+..|+++||+|||+.+      ..+.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~------~~~~~~~~   84 (394)
T PRK11652         11 FMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI------LVGMSIFI   84 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHH
Confidence            44444455555555556667899999999987654  78889999999999999999999998754      44555555


Q ss_pred             HHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014462          275 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  353 (424)
Q Consensus       275 ~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~  353 (424)
                      ++.+... ..+.+.+++..++.|++.+...+.......|.++.++++.+.++.+++..++..+ +|.+.|.+.+..+   
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g---  160 (394)
T PRK11652         85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL-APLIGGLLTTLFG---  160 (394)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC---
Confidence            5554443 3456677888899999988888888888999999899999999999999999987 8999998887665   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          354 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                                   |+++|++.++++++..++..+..
T Consensus       161 -----------------------------~~~~f~~~~~~~~~~~~~~~~~~  183 (394)
T PRK11652        161 -----------------------------WRACYLFLLLLGAGVTFSMARWM  183 (394)
T ss_pred             -----------------------------hHHHHHHHHHHHHHHHHHHHHhC
Confidence                                         99999998877766555444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.40  E-value=1.6e-10  Score=120.64  Aligned_cols=158  Identities=11%  Similarity=0.060  Sum_probs=106.4

Q ss_pred             CHHHhhhh-HHHHHHH-HHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          186 TLPQALMK-ADFLLLF-FSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       186 t~~~~l~~-~~fwll~-~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      ++++.+++ ++.+... ...++.....+++..++|+++++ +|++....  ..+...++..+|++.+|+++||+|||+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  319 (490)
T PRK10642        240 SFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV  319 (490)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            35555553 2333332 22333445556677789998865 78876543  56677888999999999999999998643


Q ss_pred             chhHHHHHHHHH-HHHHH--HHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH
Q 014462          261 PRPVAMAVAQVV-MAFAL--LYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  336 (424)
Q Consensus       261 ~r~~~l~~~~~~-~~~~~--ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l  336 (424)
                            .++.++ ...+.  +.... .+...++++.++.|++.+..++....+++|+||++.||++.++.+....+++.+
T Consensus       320 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~  393 (490)
T PRK10642        320 ------ILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL  393 (490)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH
Confidence                  222221 11111  11222 234456667778888888888888899999999999999999865555666665


Q ss_pred             HHHHHHHHHHhhhh
Q 014462          337 FSGVIASGIYDYYA  350 (424)
Q Consensus       337 ~~~~l~g~l~d~~~  350 (424)
                       +|.+.|++.+..+
T Consensus       394 -~p~i~g~l~~~~~  406 (490)
T PRK10642        394 -TPTLAAWLVESTQ  406 (490)
T ss_pred             -HHHHHHHHHHHhC
Confidence             8999999887654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.39  E-value=2.8e-11  Score=121.43  Aligned_cols=147  Identities=12%  Similarity=0.179  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      ...++..++............+++.+++|.+..+.  ..++..++..++.+..|+++||+|||+.+      ..+.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~   88 (405)
T TIGR00891        15 SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM------VTSIVLFS   88 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHH
Confidence            34444444444444455566788888899987654  88889999999999999999999998754      44555555


Q ss_pred             HHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          275 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       275 ~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      ++.++.. ..+.+.+++..++.|++.|..++...+++.|.++.++++++.++.+++..+|..+ ++.+.+.+.+..+
T Consensus        89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~~l~~~~~  164 (405)
T TIGR00891        89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV-AAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence            5555544 3456778889999999999999999999999999999999999999999999997 8998888776543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.39  E-value=2.2e-11  Score=123.59  Aligned_cols=155  Identities=10%  Similarity=0.025  Sum_probs=123.3

Q ss_pred             HHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHH
Q 014462          211 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGE  287 (424)
Q Consensus       211 ~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~  287 (424)
                      ..+...++++.+++|.+....  ..+...++..++.+..|+++||+|||+.+      .++..+.+++.++.. ..+.+.
T Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~  103 (406)
T PRK15402         30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM------LAGVAFFILTCLAILLAQSIEQ  103 (406)
T ss_pred             hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHHccHHH
Confidence            344556788889999987654  78889999999999999999999998754      444555555554443 345667


Q ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 014462          288 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  367 (424)
Q Consensus       288 l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~  367 (424)
                      +++..++.|++.+...+...+.+.|.++++++++..++......+|..+ +|.+.+.+.+..+                 
T Consensus       104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~~-----------------  165 (406)
T PRK15402        104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL-GPLVGAALIHVLP-----------------  165 (406)
T ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccC-----------------
Confidence            7888899999999888888999999999999999999888888888876 8999998887655                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          368 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       368 ~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                                     |+++|++.+++++++.+.....
T Consensus       166 ---------------w~~~~~~~~~~~~~~~~~~~~~  187 (406)
T PRK15402        166 ---------------WRGMFVLFAALAALSFFGLWRA  187 (406)
T ss_pred             ---------------ccHHHHHHHHHHHHHHHHHHHh
Confidence                           9999999998888776655443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.39  E-value=5.1e-12  Score=128.98  Aligned_cols=180  Identities=15%  Similarity=0.137  Sum_probs=130.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHc----CCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~----g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      .++.++++.+|.+.+..++..........++|.+..+.    +.+...  .+.++..+...++.+.+|+++||+++|+..
T Consensus       216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  295 (420)
T PRK09528        216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL  295 (420)
T ss_pred             HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence            45578888888766544443333333344566665442    343332  366777888889999999999999998754


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHH-HHHHHHHHHHHHH
Q 014462          261 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLIFS  338 (424)
Q Consensus       261 ~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~-~~~~~~lgs~l~~  338 (424)
                            ..+.++.+++.+++. ..+++.+++..++.|++++........++.+.+|.+.+++.++. .++...+|+.+ +
T Consensus       296 ------~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i-g  368 (420)
T PRK09528        296 ------LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF-L  368 (420)
T ss_pred             ------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH-H
Confidence                  444445555544444 34566677778888888888877788899999999999988876 56778899987 8


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          339 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       339 ~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      +.+.|.++|..|                                |+.+|.+.+++.+++.++.....
T Consensus       369 ~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        369 STLAGNLYDSIG--------------------------------FQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHHHHHhhC--------------------------------chHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999877                                99999999998887776655443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=2.6e-11  Score=120.84  Aligned_cols=178  Identities=17%  Similarity=0.131  Sum_probs=129.1

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +.++.++++++|.++...++..+.......++|.+.+ ++|.+....  +.+...+....+++..|++.||+++|+..  
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~--  268 (375)
T TIGR00899       191 EVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM--  268 (375)
T ss_pred             hhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH--
Confidence            3445677888887776665555544445566777764 578887654  55556667788899999999999987643  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                          .++.++..+..+.+. ..+.+.+++..++.|++.|...+.....+.|.+|. ++++..++.+....+|+.+ +|.+
T Consensus       269 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-g~~~  342 (375)
T TIGR00899       269 ----LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWII-AGSV  342 (375)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHH-HHHH
Confidence                223333333332222 23445556677788999998888888899999965 5689999999999999997 9999


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          342 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       342 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                      .|.+.|..+                                |+..|++.+++++++.++...
T Consensus       343 ~g~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       343 GGILAERWS--------------------------------YHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHhcc--------------------------------chhHHHHHHHHHHHHHHHHhe
Confidence            999998776                                899999999888887776543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.39  E-value=1.4e-11  Score=123.26  Aligned_cols=156  Identities=18%  Similarity=0.252  Sum_probs=128.7

Q ss_pred             HHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHH
Q 014462          212 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  288 (424)
Q Consensus       212 ~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l  288 (424)
                      .+...+|.+.+++|.+..+.  ..+...++..++++..|+++||+|||+.+      ..+.++.+++.+++. ..+.+.+
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVI------LGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHH------HHHHHHHHHHHHHHHHHccHHHH
Confidence            44567889999999987654  78889999999999999999999987644      555566666655544 3456677


Q ss_pred             HHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcc
Q 014462          289 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  368 (424)
Q Consensus       289 ~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~  368 (424)
                      ++..++.|++.+...+...+++.|.++.+++++..++.+....+|..+ +|.+.+.+.+..+                  
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------  143 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL-APIIGGWLLVWFS------------------  143 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC------------------
Confidence            888999999999999999999999999999999999999999999997 8999999888766                  


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          369 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       369 ~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                    |++.|++.+.++++..++..+..+
T Consensus       144 --------------~~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102        144 --------------WHAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence                          999999999888877666554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.39  E-value=1.7e-11  Score=126.11  Aligned_cols=174  Identities=14%  Similarity=0.143  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 014462          195 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  272 (424)
Q Consensus       195 ~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~  272 (424)
                      .+|.+++..++.......+...+|.+. +.|.+..+.  ..+...++..++.+..|+++||+|||+.+      ..+.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~~~~  100 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAGLIL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHHHHH
Confidence            334444433333333333344566555 468887654  88899999999999999999999998755      445555


Q ss_pred             HHHHHHHHHh-----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          273 MAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       273 ~~~~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                      .+++.+++..     .+...+++..++.|++.|..++.....+.|++|+++||++.++.+++..+|+.+ ++.+.+.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~~~~  179 (438)
T TIGR00712       101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLLGMA  179 (438)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHHHHH
Confidence            5555544332     233456677888999999999888999999999999999999999999999987 7877776554


Q ss_pred             hhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          348 YYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                      ...                               .||.+|++.+.++++..++.+++.++
T Consensus       180 ~~~-------------------------------~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       180 WFN-------------------------------DWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             Hhh-------------------------------hhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            322                               19999999999888876666555433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.38  E-value=3e-11  Score=121.99  Aligned_cols=179  Identities=13%  Similarity=0.137  Sum_probs=134.0

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +.++.++++.+|..+...++.........++++++.++ .|++....  +.++.++++.+|++..|+++||+++|+ .  
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-~--  273 (390)
T PRK03545        197 SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-L--  273 (390)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-H--
Confidence            46678899999877666666555555555667777766 68876543  777888999999999999999998653 2  


Q ss_pred             hHHHHHHHHHHHHHHHHH-H-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYY-A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~-~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                          .++..++.++...+ . ..+...+++..++.|++.+.......+.+.+..| +++|.+.++.+....+|..+ ||.
T Consensus       274 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-G~~  347 (390)
T PRK03545        274 ----LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA-GAL  347 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH-HHH
Confidence                22223333333222 2 3344566677888899887777777788888876 67899999999999999997 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          341 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       341 l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      +.|.++|..+                                ++.+|.+.+.+.+++.+......
T Consensus       348 ~~G~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        348 LGNQVSLHLG--------------------------------LSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHhccC--------------------------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999887                                89999999998888887765544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.38  E-value=1.3e-11  Score=124.35  Aligned_cols=156  Identities=10%  Similarity=0.024  Sum_probs=120.3

Q ss_pred             HHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-chhHH
Q 014462          211 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGE  287 (424)
Q Consensus       211 ~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~  287 (424)
                      ..+..-+|++.+++|.+..+.  +.+.+.++..++.+..|+++||+|||+..      .........+.+.... .+...
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL------FGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HHHHHHHHHHHHHHHHhccHHH
Confidence            445567889999999998765  88888999999999999999999977533      2222222222222222 46678


Q ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 014462          288 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  367 (424)
Q Consensus       288 l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~  367 (424)
                      +++..++.|++.|.. ......++|.+|+|+|+++.++...+.++|..+ ++.+.+.+.+..+                 
T Consensus        82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g-----------------  142 (368)
T TIGR00903        82 LLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG-----------------  142 (368)
T ss_pred             HHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc-----------------
Confidence            899999999999864 455566699999999999999999999999997 8988888877655                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          368 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       368 ~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                     ||+.|++.++++++..++..+..+
T Consensus       143 ---------------Wr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       143 ---------------LQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHHcC
Confidence                           999999999988877666555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.38  E-value=2.6e-11  Score=123.31  Aligned_cols=168  Identities=17%  Similarity=0.211  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      |.+++..++...+...+...++.++ +++|.+....  ..+...+...+.++.+|+++||++||+.+      ..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l------~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI------VTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH------HHHHHHH
Confidence            5555666666666666666666655 5689987765  77777888888899999999999988654      5566666


Q ss_pred             HHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 014462          274 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  352 (424)
Q Consensus       274 ~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~  352 (424)
                      +++.+.+. ..+.+.+++..++.|++.|..++...+.+.+.+|++++++++++......+|..+ ||.++|.+. ..+  
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~g~l~-~~g--  162 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI-GALLGSWLL-QYD--  162 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-Hhh--
Confidence            66665554 3456678888899999988888888999999999999999999999999999997 999999887 444  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          353 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                                                    |++.|++.+.++++..++..+.
T Consensus       163 ------------------------------~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        163 ------------------------------FRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence                                          9999999988877766554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.38  E-value=8.4e-12  Score=129.93  Aligned_cols=184  Identities=14%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCc-h
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP-R  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~-r  262 (424)
                      +++.++++++|.+++.+++..+....+.+++|.++.+ +|++..++  +.++..+++.+|++++|+++||+++|+... |
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r  324 (476)
T PLN00028        245 LRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR  324 (476)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence            4567888999998888777767677777888988755 79987654  788899999999999999999999875432 3


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                      ...+.+..++.++..+++. ..+.....+..++.+++.+...+...+++.++. ++++|+++|+.+.+..+|+.+ ++. 
T Consensus       325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i-~~~-  401 (476)
T PLN00028        325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVL-TQL-  401 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHH-HHH-
Confidence            3344444444444333333 223333444555666666555555556666655 578999999987776666655 444 


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          342 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       342 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                         +++..+.                             ..|+.+|++.+++.+++.++.++++
T Consensus       402 ---l~~~~~~-----------------------------~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        402 ---LFFTGSS-----------------------------YSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             ---HHHhcCC-----------------------------ccHhhHHHHHHHHHHHHHHHHHhee
Confidence               4442220                             0299999999999999888887765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.38  E-value=2.1e-11  Score=123.69  Aligned_cols=147  Identities=14%  Similarity=0.112  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      +++||.++++.++.......+...++.+.+++|.++..  +..+.+.+...++.+.+|+++||++||+.+      ..+.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~   75 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN   75 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence            45788888888877665555556666777888887654  378888899999999999999999999866      4445


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          271 VVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       271 ~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      ++.+++.+.+.....  .++..++.|++.+...+...++++|++|+++++++.++..+...+|..+ ||.++|.+++.
T Consensus        76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~-Gp~lgG~l~~~  150 (393)
T PRK11195         76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL-GTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            444444443322211  2566788999999999999999999999999999999999999999987 99999999873

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.38  E-value=3.4e-11  Score=122.73  Aligned_cols=148  Identities=14%  Similarity=0.104  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          196 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       196 fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      +...++.+++...........+|.+.+++|.++.+.  ..++..++..++.+.+|+++||+|||+.+      .++.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l------~~~~~~~   93 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM------MWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHH
Confidence            344444444444444445556777888899987654  78889999999999999999999998755      5666666


Q ss_pred             HHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          274 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       274 ~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +++.++.. ..+.+.+++..++.|++.|..++....++.|.+++++|+++.++...+..+|..+ ++.+.+.+.+..+
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~~~  170 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHcccCC
Confidence            66665554 3456678889999999999999999999999999999999999999999999987 7888888776655

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.38  E-value=3.4e-11  Score=119.26  Aligned_cols=160  Identities=15%  Similarity=0.197  Sum_probs=116.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      .++.++++.+|.+.+..++.......+..++|.+.++ +|++..+.  ..+...+++.+|+++.|++.||..+++...  
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~--  286 (379)
T TIGR00881       209 LQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGP--  286 (379)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchH--
Confidence            4557889999998888887777777777888888765 78886544  778888999999999999999876544331  


Q ss_pred             HHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                       ..........++...+..   .+.....+..++.|++.++........+.|.+|++++|+..++.++...+|+.+ +|.
T Consensus       287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~  364 (379)
T TIGR00881       287 -LAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGIL-AGL  364 (379)
T ss_pred             -HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhh-hhh
Confidence             111111222222222221   223344455666776666666677788999999999999999999999999997 999


Q ss_pred             HHHHHHhhhh
Q 014462          341 IASGIYDYYA  350 (424)
Q Consensus       341 l~g~l~d~~~  350 (424)
                      +.|.+.|..|
T Consensus       365 ~~g~l~~~~g  374 (379)
T TIGR00881       365 PLGYLADGFG  374 (379)
T ss_pred             hHHHHHHhhc
Confidence            9999999876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.38  E-value=2.3e-10  Score=115.55  Aligned_cols=175  Identities=14%  Similarity=0.081  Sum_probs=124.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHH-HHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~s-i~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +++.+|++.+|......++............+.+.++.|++..+.  +..... +...+|.+.+|++.||+++|+..   
T Consensus       201 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l---  277 (390)
T TIGR02718       201 LFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF---  277 (390)
T ss_pred             HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence            445778888887777766666655556667788888899998765  444444 46678899999999999987644   


Q ss_pred             HHHHHHHHHHHHHH-HHHHh------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCc-chhhHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFAL-LYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSL  335 (424)
Q Consensus       264 ~~l~~~~~~~~~~~-ll~~~------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~-~~~g~~~g~~~~~~~lgs~  335 (424)
                         ..+.++.+... ..+..      .....++...++.+++.|...+...+.+.+..++ +++|+.+++.+....+|+.
T Consensus       278 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~  354 (390)
T TIGR02718       278 ---ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL  354 (390)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence               22222221111 11111      1122334444555677888888888888888876 7899999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 014462          336 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  400 (424)
Q Consensus       336 l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l  400 (424)
                      + +|.+.|.++|..|                                |+..|.+.+++.+++.++
T Consensus       355 ~-g~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       355 I-ASSIAGYLTDRFG--------------------------------YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             H-HHHHHHHHHHHHc--------------------------------cHHHHHHHHHHHHHHHHH
Confidence            8 9999999999877                                889999888877776544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.37  E-value=1.6e-11  Score=126.42  Aligned_cols=186  Identities=13%  Similarity=0.098  Sum_probs=135.0

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      .+.++.+|+++.|++.+.+++..+...++..++|++.++ .++....  ...+..+...++|+++|+++||+|+++.+  
T Consensus       243 ~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl--  319 (462)
T PRK15034        243 ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT--  319 (462)
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH--
Confidence            346679999999999999999999998898899999876 3443332  45566788999999999999999988654  


Q ss_pred             hHHHHHHHHHHHHHHH---HHHh----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCc-------------------
Q 014462          263 PVAMAVAQVVMAFALL---YYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-------------------  316 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~l---l~~~----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~-------------------  316 (424)
                          .++.+.+.+...   +...    .+.....+..+...++.|.....+.-.+.++|+.                   
T Consensus       320 ----~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~  395 (462)
T PRK15034        320 ----LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQRE  395 (462)
T ss_pred             ----HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhH
Confidence                222332222221   1111    1122333333344455666666666677777763                   


Q ss_pred             --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHH
Q 014462          317 --KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLC  394 (424)
Q Consensus       317 --~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~  394 (424)
                        ++.|...|+......+|+++ -|.+.|..++..+                               .|...|++..+..
T Consensus       396 ~~~~~g~v~G~v~a~G~~Ggf~-~p~~~g~~~~~~g-------------------------------~~~~~~~~~~~~~  443 (462)
T PRK15034        396 AVTETAAALGFISAIGAVGGFF-IPQAFGMSLNMTG-------------------------------SPVGAMKVFLIFY  443 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccch-hhHHHHHHHHHcC-------------------------------CcHHHHHHHHHHH
Confidence              26899999999999999998 5999999998877                               2889999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 014462          395 IIAMVMSLIVVHRTK  409 (424)
Q Consensus       395 ~~~~~l~~~l~~~~~  409 (424)
                      +++.++.++...|+.
T Consensus       444 ~~~~~~~w~~y~r~~  458 (462)
T PRK15034        444 IVCVLLTWLVYGRRK  458 (462)
T ss_pred             HHHHHHHHHHhccCC
Confidence            999888888776653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.37  E-value=3.6e-11  Score=121.48  Aligned_cols=174  Identities=15%  Similarity=0.163  Sum_probs=132.3

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchh-------HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS-------IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~-------~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      ++.+..+++..++.......+...+|.+.+++|.+..+       ...++..+...++.+..|+++||++||+.+     
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-----   87 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML-----   87 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH-----
Confidence            44566666666665555555666789999999887532       267788889999999999999999988654     


Q ss_pred             HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                       ..+.++.+++.+++. ..+.+.+++..++.|++.+ ..+.....+.+.++.++++++.++......+|..+ +|.+.|.
T Consensus        88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~  164 (408)
T PRK09874         88 -LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALL-GPLAGGL  164 (408)
T ss_pred             -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence             445555555555444 3456677788888898755 45667788899999999999999999999999987 8999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      +.+..+                                |+.+|++.+++.+++.+...++.+
T Consensus       165 l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        165 LADSYG--------------------------------LRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHHHhC--------------------------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888666                                999999999888877666655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.37  E-value=1.5e-11  Score=125.40  Aligned_cols=175  Identities=15%  Similarity=0.077  Sum_probs=132.4

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  267 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~  267 (424)
                      ..++++++.+++..++...........+|.+.++.+.+..+.  ..+...++..++.+..|+++||++||+.+      .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l------~   86 (417)
T PRK10489         13 LKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI------L   86 (417)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE------E
Confidence            445777777777666655554455556788888887776544  88889999999999999999999999866      2


Q ss_pred             HHHHHHHHHHHHH-----H-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          268 VAQVVMAFALLYY-----A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       268 ~~~~~~~~~~ll~-----~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                      .+.++.+++.+.+     . ..+.+.+++..++.|++.|...+...+.+.+.++.++++++.++.++...+|..+ ||.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l  165 (417)
T PRK10489         87 LARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI-SPAL  165 (417)
T ss_pred             ehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh-HHHH
Confidence            2333333322221     1 2334566778888899988888888899999999999999999999999999997 9999


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          342 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       342 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                      +|.+++..+                                |++.|++.+...+++.++.+.
T Consensus       166 ~g~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        166 GGLLIAAGG--------------------------------VAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             HHHHHHHHh--------------------------------hHHHHHHHHHHHHHHHHHHHh
Confidence            999998766                                888888887777666555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.37  E-value=1.8e-10  Score=117.38  Aligned_cols=182  Identities=10%  Similarity=0.030  Sum_probs=130.5

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      ..++++.++..++..++... ...+..++|.+.++ +|++....  +.+..+++..+|+++.|++.||.++++.+     
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l-----  292 (417)
T PRK10489        219 FLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLM-----  292 (417)
T ss_pred             HHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHH-----
Confidence            36677777665554444322 23455678888887 88886543  67788899999999999999875443322     


Q ss_pred             HHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                       ..+.++++++.+++.. .+...+.+..++.|++.+...+...+++.+.+|.+.+|+.+++.++...+|+.+ |+.+.|.
T Consensus       293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~l~G~  370 (417)
T PRK10489        293 -LLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI-GAALLGG  370 (417)
T ss_pred             -HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH-HHHHHHH
Confidence             3444455555554443 334455667778888888877778889999999999999999999999999997 9999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      +.|..+                                ++.++++.+++.++..++......++|+
T Consensus       371 l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        371 LGAMMT--------------------------------PVASASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             HHHHhc--------------------------------hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999877                                6777877777666655555554455444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.37  E-value=3.6e-11  Score=124.22  Aligned_cols=171  Identities=13%  Similarity=0.168  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhhhhHHH----HHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLT----VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       197 wll~~~~~~~~~~~~~----~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      |.++...++.......    +...+|.+.++ |.+..+.  ..+...++..++.+.+|+++||+|+|+.+      .++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l------~~~~  100 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGL  100 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH------HHHH
Confidence            5554444444333222    23456766666 8887654  88899999999999999999999998754      5555


Q ss_pred             HHHHHHHHHHHh-----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          271 VVMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       271 ~~~~~~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      ++.+++.++++.     .+...+++..++.|++.|..++.....+.++++++++|++.++.+.+..+|+.+.+|.+...+
T Consensus       101 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~  180 (452)
T PRK11273        101 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGM  180 (452)
T ss_pred             HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            555555554432     134456777889999999888888888999999999999999999999998765455433333


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          346 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      ....+                                |++.|++.++++++..++.+++.+
T Consensus       181 ~~~~g--------------------------------w~~~f~i~~~~~~~~~~l~~~~~~  209 (452)
T PRK11273        181 AWFND--------------------------------WHAALYMPAFAAILVALFAFAMMR  209 (452)
T ss_pred             HHhcc--------------------------------HHHHHHHHHHHHHHHHHHHHHHcc
Confidence            22222                                999999999888776666555543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.37  E-value=1.8e-11  Score=127.85  Aligned_cols=150  Identities=18%  Similarity=0.255  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhh-hhhcccCchhHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMAVA  269 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~-~g~k~~~~r~~~l~~~  269 (424)
                      +.+|.+++..++...+.+++...++.+.+ ++|.+..++  +.+.+.....+..+.+|+++|| +||||.+      .++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~------~~g   87 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI------VLG   87 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH------HHH
Confidence            45788888888888888888888888765 489887654  6677777788888899999999 9999866      677


Q ss_pred             HHHHHHHHHHHHhc-h-hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          270 QVVMAFALLYYAIG-W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       270 ~~~~~~~~ll~~~~-~-~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~--~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      .+++.++.+++... + ...++++.++.|+|.|...+...++++|.||.+  +++..+++.+++.++|+.+ +|.+.|++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~-g~~l~g~l  166 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI-SLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH-HHHHHHHH
Confidence            77777777665533 2 234567888999999999999999999999877  4588999999999999997 99999999


Q ss_pred             Hhhhh
Q 014462          346 YDYYA  350 (424)
Q Consensus       346 ~d~~~  350 (424)
                      .++.+
T Consensus       167 ~~~~g  171 (489)
T PRK10207        167 ADKFG  171 (489)
T ss_pred             HHhhC
Confidence            88766

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.37  E-value=9.8e-11  Score=118.30  Aligned_cols=156  Identities=15%  Similarity=0.168  Sum_probs=117.3

Q ss_pred             HHhcHHHHHHHcCCCchh------HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchh
Q 014462          213 VIDNLGQICQSLGYADTS------IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP  285 (424)
Q Consensus       213 ~~~~l~~i~~~~g~s~~~------~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~  285 (424)
                      +...++.+.++.+.+..+      .+.++.+++..++++..|+++||+++|+.+      .++.++..++.+.+. ..+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~  311 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL------ITALIFSVLLLIPMSFVQTP  311 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH------HHHHHHHHHHHHHHHHhccH
Confidence            344566666664333221      145566788889999999999999987654      333444444443333 2345


Q ss_pred             HHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCC
Q 014462          286 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  365 (424)
Q Consensus       286 ~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~  365 (424)
                      +.+++..++.|++.|...+...+.+.+..+.+++|+.+++.+....+|..+ ||.++|.+.|..+               
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-gp~~~G~l~~~~g---------------  375 (408)
T PRK09874        312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT-GPLMGAAISANYG---------------  375 (408)
T ss_pred             HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh-hHHHHHHHHhhcc---------------
Confidence            566677888999999999888889999999999999999999999999997 9999999988766               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          366 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       366 ~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                                       |+.+|++.+++.+++++......+|
T Consensus       376 -----------------~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        376 -----------------FRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             9999999999999888777654433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.36  E-value=4.7e-11  Score=124.23  Aligned_cols=149  Identities=12%  Similarity=0.176  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 014462          195 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  272 (424)
Q Consensus       195 ~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~  272 (424)
                      .+..+++..++...........+|.+.+++|.+..+.  +.+...++..++.+..|+++||+|||+.+      ..+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~   94 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM------VISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence            4445555555544444455556788888899987654  88888999999999999999999998754      555555


Q ss_pred             HHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          273 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       273 ~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      .+++.+++. ..+.+.+++..++.|++.+..++....++.|.++.+++++..++...+..+|+.+ ++.+.+.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~  172 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV-AAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCC
Confidence            666655544 3456678888999999999999999999999999999999999999999999997 8999998887665

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.36  E-value=5.9e-10  Score=114.43  Aligned_cols=182  Identities=12%  Similarity=0.003  Sum_probs=116.5

Q ss_pred             CHHHhhhhHHHHHHHHHHHHh-hhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCc
Q 014462          186 TLPQALMKADFLLLFFSLVLA-SGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  261 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~-~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~  261 (424)
                      ++++.++++++|.+.+..++. ....+.+.+++|+++++ +|++..+.  ..++..+...+++++.|+++||++||+.. 
T Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~-  312 (432)
T PRK10406        234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM-  312 (432)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-
Confidence            466788888888877665554 45566677899998865 78886544  66677778888999999999999988633 


Q ss_pred             hhHHHHHHHHHHHHH---HHHHH-hc-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHH-HHH
Q 014462          262 RPVAMAVAQVVMAFA---LLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSL  335 (424)
Q Consensus       262 r~~~l~~~~~~~~~~---~ll~~-~~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~l-gs~  335 (424)
                           .+..++.++.   .+... .. +.........+.+++.+...+..+.+++|+||++.||+++|+.+....+ ++.
T Consensus       313 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~  387 (432)
T PRK10406        313 -----LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG  387 (432)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence                 2211111111   11111 11 2222222222233444555566778899999999999999998876554 343


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          336 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       336 l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      . .|.+.+. .+..+                               .|...+++.+++++++.+..+++..
T Consensus       388 ~-~p~~~~~-l~~~g-------------------------------~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        388 S-AEYVALS-LKSIG-------------------------------METAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             H-HHHHHHH-HHHhC-------------------------------CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            3 6777774 45444                               1666677777777777666665443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.36  E-value=2.9e-11  Score=120.21  Aligned_cols=145  Identities=14%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHH-HHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          195 DFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       195 ~fwll~~~~~~~~~~~~~~~~~l~~-i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      .+|..++++++.......+...+|+ +.+++|.+..+.  ..+...++..++.+.+|+++||+|||+.+      .++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~   75 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT------TLSLL   75 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHH
Confidence            4688888888877777777888886 667899998764  88899999999999999999999998754      55666


Q ss_pred             HHHHHHHHHH-hc-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          272 VMAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       272 ~~~~~~ll~~-~~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                      +++++.+++. .. +.+.+++..++.|++.+ .+.....++++.+++++|++..++......+|..+ ++.+.+.+..
T Consensus        76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~  151 (366)
T TIGR00886        76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV-AQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHH
Confidence            6666666654 34 56677788889999855 45667889999999999999999998777777775 6666665554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.35  E-value=3.6e-11  Score=124.50  Aligned_cols=151  Identities=10%  Similarity=0.100  Sum_probs=117.6

Q ss_pred             HhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-chhHHHHH
Q 014462          214 IDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYV  290 (424)
Q Consensus       214 ~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~  290 (424)
                      ...++++.+++|.+..+.  ..+...++..++.+++|+++||++||+.+      ..+.++.+++.++.+. .+.+.+++
T Consensus        39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l~~  112 (455)
T TIGR00892        39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV------IAGGLLASLGMILASFSSNVIELYL  112 (455)
T ss_pred             hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH------HhhHHHHHHHHHHHHHhhhHHHHHH
Confidence            345788888999986654  77778888899999999999999998744      4455555555555443 34445554


Q ss_pred             H-HHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 014462          291 T-TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  369 (424)
Q Consensus       291 ~-~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      . .++.|++.|..+.+..+++.++|+ ++|+++.++.+++..+|+.+ +|.+.|.+.+..+                   
T Consensus       113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~-~~~l~~~l~~~~g-------------------  171 (455)
T TIGR00892       113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST-LAPLNQYLFESFG-------------------  171 (455)
T ss_pred             HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhC-------------------
Confidence            3 477899988877777888899995 78999999999999999997 8999999988766                   


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          370 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       370 ~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                                   ||++|++.+++++++.+..+++
T Consensus       172 -------------wr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       172 -------------WRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHh
Confidence                         9999999999888776554444

>PRK11043 putative transporter; Provisional

Probab=99.35  E-value=6.2e-11  Score=119.98  Aligned_cols=161  Identities=9%  Similarity=0.094  Sum_probs=127.1

Q ss_pred             hhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-h
Q 014462          206 ASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-I  282 (424)
Q Consensus       206 ~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~  282 (424)
                      +..+...+...+|++.+++|.++.+.  ..++..++..++.+.+|+++||++||+.+      ..+.++..++.++.. .
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL------LAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH------HHHHHHHHHHHHHHHHh
Confidence            33334445556777888899987755  88899999999999999999999998754      455555555555444 3


Q ss_pred             chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccC
Q 014462          283 GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG  362 (424)
Q Consensus       283 ~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~  362 (424)
                      .+.+.+++..++.|++.+...+...+.+.|.++.++++..++..+....+|+.+ +|.+.|.+.+..+            
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g------------  158 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL-APLLGAWLLNHFG------------  158 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC------------
Confidence            455667778889999988888888889999999999999999998888999987 8999999988766            


Q ss_pred             CCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          363 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       363 ~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                          |+..|++.+.+.++..++.+.+.
T Consensus       159 --------------------~~~~~~~~~~~~~~~~~~~~~~~  181 (401)
T PRK11043        159 --------------------WQAIFATLFAITLLLILPTLRLK  181 (401)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHcC
Confidence                                99999999888887766655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.34  E-value=5.5e-11  Score=123.82  Aligned_cols=173  Identities=13%  Similarity=0.106  Sum_probs=118.8

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 014462          201 FSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  278 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~l  278 (424)
                      +.+++...........+|.+.+++|.+..+.  ..+...++..++.+.+|+++||+|+|+.+      ..+.++.+++.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~------~~~~~~~~~~~~  116 (476)
T PLN00028         43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS------AFLLMLTAPAVF  116 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHH
Confidence            3333333333444455778888899987654  66677788889999999999999998644      444555555554


Q ss_pred             HHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 014462          279 YYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  357 (424)
Q Consensus       279 l~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~  357 (424)
                      +.. ..+...+++..++.|++.+... .....++++|+.++||.+.++.+....+|+.+ ++.+.+.+.+.....     
T Consensus       117 ~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~-~~~~~~~i~~~~~~~-----  189 (476)
T PLN00028        117 CMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV-TQLLMPLVFPLIKDA-----  189 (476)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc-----
Confidence            444 3455667777888999887654 45567899999999999999998877777775 666666554322100     


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          358 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                                        .|.+...||++|++.++++++..++.+++
T Consensus       190 ------------------~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        190 ------------------GAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             ------------------CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                              00011139999999999888776665554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.34  E-value=3.1e-11  Score=120.21  Aligned_cols=161  Identities=17%  Similarity=0.104  Sum_probs=116.3

Q ss_pred             CCCHHHhhhhHH--HHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 014462          184 DFTLPQALMKAD--FLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKF  258 (424)
Q Consensus       184 ~~t~~~~l~~~~--fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~  258 (424)
                      ..+.++.+++++  ++......++..........++|.+.+ ++|.+....  ..+...+++.+++++.|+++||+++|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  286 (394)
T TIGR00883       207 RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP  286 (394)
T ss_pred             cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            445777777765  777766666666666666778888884 478876544  677888999999999999999999876


Q ss_pred             cCchhHHHHHHHHHHHHH--HHH-HH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHH-HHHHHHH
Q 014462          259 AYPRPVAMAVAQVVMAFA--LLY-YA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAG  333 (424)
Q Consensus       259 ~~~r~~~l~~~~~~~~~~--~ll-~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~-~~~~~lg  333 (424)
                      ..     .....+....+  .+. +. ..+.+.++...++.|++.+..+++..+.++|.+|.+++++++++. +.+..+|
T Consensus       287 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g  361 (394)
T TIGR00883       287 VL-----IIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIF  361 (394)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHH
Confidence            43     11111111112  111 11 123445556677888999999999999999999999999999984 4566778


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 014462          334 SLIFSGVIASGIYDYYA  350 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~  350 (424)
                      +.+ +|.+.|.++|+.+
T Consensus       362 ~~~-~p~~~g~l~~~~g  377 (394)
T TIGR00883       362 GGF-APYIAAALVAMTG  377 (394)
T ss_pred             hhH-HHHHHHHHHHHcC
Confidence            876 8999999999876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.3e-09  Score=112.28  Aligned_cols=189  Identities=17%  Similarity=0.105  Sum_probs=128.0

Q ss_pred             CCCCHHHhhhhHHH----HHHHHHHHHhhhhHHHHHh-cHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhh
Q 014462          183 EDFTLPQALMKADF----LLLFFSLVLASGSGLTVID-NLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIV  255 (424)
Q Consensus       183 ~~~t~~~~l~~~~f----wll~~~~~~~~~~~~~~~~-~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g  255 (424)
                      ++.+++|+++++..    ++.+...++...++...++ +...+.++.|++...+  .....++.+.+..+.+.++.||+|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            56789999997644    3444455555555554443 4555778889987644  777889999999999999999999


Q ss_pred             hcccCchhHHHHHHHHHHHHHHHHHH-------hchhHH---HHHHHHHHHHHhhhh-HhHHHHHHHHhhCcchhhHHHH
Q 014462          256 RKFAYPRPVAMAVAQVVMAFALLYYA-------IGWPGE---IYVTTVLVGLSYGAH-WAIVPAAASELFGLKSFGALYN  324 (424)
Q Consensus       256 ~k~~~~r~~~l~~~~~~~~~~~ll~~-------~~~~~~---l~~~~~l~G~~~G~~-~~~~~~~~se~fg~~~~g~~~g  324 (424)
                      ||+..      ..+..++++..+++.       ....+.   .+++.++..++++.. -++.+-+.+|+||.+.|+.+..
T Consensus       334 RRpLl------l~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s  407 (485)
T KOG0569|consen  334 RRPLL------LISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS  407 (485)
T ss_pred             CcHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence            98644      333334333333322       111121   233444444444433 3567789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          325 FLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       325 ~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                      +..+.+.+..++ -...+-.+++..|                                 ...|++..+.|++..+..+..
T Consensus       408 ~~~~~~w~~~fi-v~~~fp~l~~~~g---------------------------------~~~filF~i~~~~~~i~~~~~  453 (485)
T KOG0569|consen  408 VATAVNWLSNFI-VGFAFPPLQNVIG---------------------------------PYVFILFVIPLAIFLIYLYRY  453 (485)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhc---------------------------------chhhHHHHHHHHHHHHHHHHh
Confidence            999999988876 3555555555555                                 266888888888887777777


Q ss_pred             hhhhhHH
Q 014462          405 VHRTKSV  411 (424)
Q Consensus       405 ~~~~~~~  411 (424)
                      ..+||..
T Consensus       454 lPETkgr  460 (485)
T KOG0569|consen  454 LPETKGR  460 (485)
T ss_pred             CcccCCC
Confidence            7888743

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.34  E-value=6e-12  Score=124.73  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=127.0

Q ss_pred             HhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-
Q 014462          205 LASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-  281 (424)
Q Consensus       205 ~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-  281 (424)
                      +.......+...+|.+.+++|.+..+.  +.++..++..++.+..|+++||+|||+.+      .++.++.+++.+++. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881         6 AYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL------PIGLILCAIVNLFFGF   79 (379)
T ss_pred             HHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh------HHHHHHHHHHHHHHHH
Confidence            333444445556788888899987654  88899999999999999999999998765      555666666665554 


Q ss_pred             hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhhhhc
Q 014462          282 IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV-IASGIYDYYAEKQAGLLWKY  360 (424)
Q Consensus       282 ~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~-l~g~l~d~~~~~~~~~~~~~  360 (424)
                      ..+.+.+++..++.|++.|..++...++++|.++.+++++..++.+....+|+.+ ++. +.+.+.+..+          
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~----------  148 (379)
T TIGR00881        80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELYS----------  148 (379)
T ss_pred             hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcCC----------
Confidence            3456677888999999999999999999999999999999999999999999997 784 5555554433          


Q ss_pred             cCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          361 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       361 ~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                            |++.|++.++++++..++.+++.
T Consensus       149 ----------------------~~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881       149 ----------------------WHWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             ----------------------chhHHHHHHHHHHHHHHHHheee
Confidence                                  99999998887777665555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.34  E-value=2.6e-10  Score=117.96  Aligned_cols=159  Identities=14%  Similarity=0.141  Sum_probs=110.6

Q ss_pred             HHhcHHHHHHHcCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh---ch-hH
Q 014462          213 VIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI---GW-PG  286 (424)
Q Consensus       213 ~~~~l~~i~~~~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~---~~-~~  286 (424)
                      ..++.|.+.++.|.+...  ......++.+.++.+++|+++||++||+..      ..+.++++++.+++..   .+ ..
T Consensus       290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~------i~~~~~~~v~~~~l~~~~~~~~~~  363 (479)
T PRK10077        290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPG  363 (479)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH------HHhHHHHHHHHHHHHHHHhcCccc
Confidence            345678888888987543  355677889999999999999999987644      4445555555444331   11 11


Q ss_pred             -HHHHHHHHHHHHhhhhH-hHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhhhhhh
Q 014462          287 -EIYVTTVLVGLSYGAHW-AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY------DYYAEKQAGLLW  358 (424)
Q Consensus       287 -~l~~~~~l~G~~~G~~~-~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~------d~~~~~~~~~~~  358 (424)
                       ......++.+++.+..+ +..+..++|.+|+++||++.|+.+....+|+++ ++.+.+.+.      |..+        
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~p~~~~~~~~~~~~~--------  434 (479)
T PRK10077        364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF-VSWTFPMMDKNSWLVAHFH--------  434 (479)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccchhhhcc--------
Confidence             22334445555555433 567899999999999999999999999999987 666665444      2222        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          359 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                                              ++.+|++.++++++++++.+++.+++|+
T Consensus       435 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        435 ------------------------NGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             ------------------------CccHHHHHHHHHHHHHHHHHhccccCCC
Confidence                                    6778888888888887777666655553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.34  E-value=5e-11  Score=116.55  Aligned_cols=171  Identities=22%  Similarity=0.296  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHc-CCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcc-cCchhHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKF-AYPRPVAMAVA  269 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~-g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~-~~~r~~~l~~~  269 (424)
                      +++|.+.+..++..........+.+.+.++. |.+..+.  ..+...++..++++..|++.||+++|+ .+      ..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~  248 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL------LIG  248 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHH
Confidence            6677777777777777777778888888775 8876654  788889999999999999999999886 33      455


Q ss_pred             HHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          270 QVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       270 ~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      ..+..++.+.+.. .+...+++..++.|++.+..++...+.+.|.+|.+++|+.+++.+....+|+.+ ++.+.|.++|.
T Consensus       249 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~g~l~~~  327 (352)
T cd06174         249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL-GPLLAGLLLDT  327 (352)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            5555566555543 345677888999999999999999999999999999999999999999999998 89999999986


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                      .+                                |+..|.+.+++++++.+...+
T Consensus       328 ~~--------------------------------~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         328 GG--------------------------------YGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             cC--------------------------------cchHHHHHHHHHHHHHHHhee
Confidence            55                                899999999988887776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.34  E-value=1.8e-10  Score=118.69  Aligned_cols=189  Identities=12%  Similarity=0.129  Sum_probs=131.1

Q ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHH
Q 014462          191 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  267 (424)
Q Consensus       191 l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~  267 (424)
                      ..++.+|+.+++++.+...-.......+.+.+ ++|++.++.  +.++..+...++|+..|++.||+|.|+..      .
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~------~  104 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT------V  104 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------H
Confidence            34456777777776666555555555666665 699998765  88889999999999999999999988755      4


Q ss_pred             HHHHHHHHHHHHHHh------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH---HH
Q 014462          268 VAQVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI---FS  338 (424)
Q Consensus       268 ~~~~~~~~~~ll~~~------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l---~~  338 (424)
                      ++.++.+++.++...      .+...+++..++.|++ |+.++.....++++||++++|++.|+......+|..+   +.
T Consensus       105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            444555555554443      4667888999999998 7888999999999999999999999995444455543   14


Q ss_pred             HHHHH-HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCccc-CCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          339 GVIAS-GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCL-GSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       339 ~~l~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      |.+.+ .+++..|.+..                .    .-. +...++.++++...+.+++.++.+++..
T Consensus       184 p~~i~~~l~~~~G~~~~----------------~----~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        184 PLVIFVPVFAFLGVNGV----------------P----QADGSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HHHHHHHHHHHhccccc----------------c----ccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            44443 34444442110                0    000 1234889998998888887777776543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.33  E-value=6.9e-10  Score=111.32  Aligned_cols=182  Identities=16%  Similarity=0.233  Sum_probs=139.1

Q ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          188 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       188 ~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      .+.++++..|......++..+..++...++.+++++ .|++....  ....++++.++|..++|+++|| +.|+..    
T Consensus       205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l----  279 (394)
T COG2814         205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL----  279 (394)
T ss_pred             HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH----
Confidence            448999999999999999988888888888888877 68887654  8889999999999999999999 655433    


Q ss_pred             HHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~--~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                        .....++++..+.+.  ..+.....+..++.|+..+........-.++ .-+++.+.+.++...+.++|..+ |..++
T Consensus       280 --~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~-GA~lG  355 (394)
T COG2814         280 --IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL-GAALG  355 (394)
T ss_pred             --HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH-HHHHH
Confidence              333344444444433  2334444555556677666655556666666 44688999999999999999997 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      |.++|+.|                                |..+.++.+.+.+++.++.++..++.|+
T Consensus       356 G~v~~~~g--------------------------------~~~~~~~~a~l~~~a~~~~~~~~~~~~~  391 (394)
T COG2814         356 GLVLDALG--------------------------------YAATGWVGAALLLLALLLALLSARKDRR  391 (394)
T ss_pred             HHHHHhhc--------------------------------hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999976                                9999999999999998888776554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.32  E-value=8.4e-11  Score=118.50  Aligned_cols=176  Identities=16%  Similarity=0.103  Sum_probs=126.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH-HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      ++++++++.+|.+....++.....+++.+|+|+++++.|++.... ..++..+   .|.+..++++||..||+.  |...
T Consensus       185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~---~g~~g~~~~~d~~~r~~~--r~~~  259 (368)
T TIGR00903       185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAIL---AGLIGVAVIPDRVARAGL--RSIY  259 (368)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHH---HHHHHHHHhhHHhhhhhh--HHHH
Confidence            456899999999999999999999999999999998888875422 3334344   444556899999976532  1122


Q ss_pred             HHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                      .....+++++..+.+.. .+.....+...+.|++.+..++..+++.+|.+|++.||++.|+.+....+|+.+ +|.+.+.
T Consensus       260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~~  338 (368)
T TIGR00903       260 IRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAML  338 (368)
T ss_pred             HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHHH
Confidence            22222333333333332 223334445566677777777888899999999999999999999999999987 7888886


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 014462          345 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       345 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~  402 (424)
                      +..  +                                .+..|.+.+..++++++..+
T Consensus       339 ~~~--~--------------------------------~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       339 FIS--S--------------------------------AEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             Hhc--C--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            662  3                                66778888888888776653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.32  E-value=2.6e-11  Score=125.80  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHhhhhHHH----HHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHH
Q 014462          196 FLLLFFSLVLASGSGLT----VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  269 (424)
Q Consensus       196 fwll~~~~~~~~~~~~~----~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~  269 (424)
                      +|.++...+++....+.    +...+|.+.+++|.+..+.  +.+.+.++..++.+..|+++||+|+|+.+      .++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~  100 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL------PFL  100 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH------HHH
Confidence            45455444444443332    2334788889999987654  88889999999999999999999998765      333


Q ss_pred             HHHHHHHHHHHH------hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          270 QVVMAFALLYYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       270 ~~~~~~~~ll~~------~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      .++.+++.+.+.      ..+.+.+++..++.|++.|..++....+++++||+++||++.|+...+..+|..+ ++.+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i~~  179 (467)
T PRK09556        101 LILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGVAL  179 (467)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHHHH
Confidence            333333322222      2456678888999999999999999999999999999999999999999999997 788777


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                      .+.+....                             .+|+..|.+.+.+.++..++.+++
T Consensus       180 ~~~~~~~~-----------------------------~~~~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        180 WGANYFFD-----------------------------GHVIGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             HHHHhhcc-----------------------------CcchhHHHHHHHHHHHHHHHHHHh
Confidence            66554210                             028888888887776655555444

>TIGR00897 2A0118 polyol permease family

Probab=99.31  E-value=7.7e-11  Score=119.74  Aligned_cols=148  Identities=11%  Similarity=0.025  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      +..+++.++.........+.++++.+++|.+..+.  ..+...++..++.+..|++.||+|||+.+      ..+.++.+
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l------~~~~~~~~   89 (402)
T TIGR00897        16 LWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM------MIGLLLWC   89 (402)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHHHHH
Confidence            33444444443333344556778888899987655  88899999999999999999999998755      44444444


Q ss_pred             HHHHHH---Hh--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          275 FALLYY---AI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  349 (424)
Q Consensus       275 ~~~ll~---~~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~  349 (424)
                      ++.+++   ..  .+.+.+++..++.|++.+.......+.+.+.++++++|++.|+.+++..+|..+++|.+.|.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~  169 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF  169 (402)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            443322   22  3455667788888998888777777888899999999999999999999997444898888888776


Q ss_pred             h
Q 014462          350 A  350 (424)
Q Consensus       350 ~  350 (424)
                      +
T Consensus       170 g  170 (402)
T TIGR00897       170 G  170 (402)
T ss_pred             c
Confidence            6

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.31  E-value=3.3e-10  Score=111.76  Aligned_cols=157  Identities=15%  Similarity=0.093  Sum_probs=121.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHH-hcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~-~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +++.++++.+|.+....++......... +..|.+.++ +|.+..+.  +.+..+++..++++..|++.||+++|+..  
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--  280 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM--  280 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH--
Confidence            3457788888887776666655555554 677888776 78876544  77788899999999999999999877533  


Q ss_pred             hHHHHHHHHHHHHHHHHHHh-c-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~~-~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                          ..+..+.+++.+.+.. . +.+.+++..++.|++.+...+...+++.|.+|++++|+.+++.++...+|..+ ++.
T Consensus       281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~  355 (365)
T TIGR00900       281 ----TGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL-GLI  355 (365)
T ss_pred             ----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                3334444444444332 2 24566778889999999999999999999999999999999999999999997 999


Q ss_pred             HHHHHHhhhh
Q 014462          341 IASGIYDYYA  350 (424)
Q Consensus       341 l~g~l~d~~~  350 (424)
                      +.|.++|+.|
T Consensus       356 ~~g~l~~~~g  365 (365)
T TIGR00900       356 LAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHcC
Confidence            9999998753

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.30  E-value=1.1e-10  Score=123.05  Aligned_cols=178  Identities=17%  Similarity=0.113  Sum_probs=130.1

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHH----HhcHHHHHHHcCCCchh-HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTV----IDNLGQICQSLGYADTS-IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~-~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      -+++++++..+.++.+...+.+..    .+-++++.++.|-++.. ++.+...+.+.++.++.|.++|.+|||+..    
T Consensus        36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~----  111 (599)
T PF06609_consen   36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF----  111 (599)
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH----
Confidence            456777777665544433322221    23468889999887654 488889999999999999999999998654    


Q ss_pred             HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                        .++.++..+|.+..+. .+...+..+.++.|++.|... +....++|+.|.|.|+..+.+.....-+...+ ||.++.
T Consensus       112 --i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~-~~~ia~  187 (599)
T PF06609_consen  112 --IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWI-SPLIAQ  187 (599)
T ss_pred             --HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcc-cHHHHH
Confidence              7888888888887774 556788889999999988876 45667999999999988887766544443333 555554


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                      .+....                                .|||.|++.+..+.+++++..++.++
T Consensus       188 ~~~~~~--------------------------------~WRw~~~~~~i~~~i~~vl~~~fY~P  219 (599)
T PF06609_consen  188 LFAAHS--------------------------------GWRWIFYIFIIWSGIALVLIFFFYFP  219 (599)
T ss_pred             HhccCC--------------------------------CcchHHHHHHHHHHHHHHHHHHHhCC
Confidence            443322                                29999999999988888776655543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.30  E-value=1.5e-10  Score=118.25  Aligned_cols=154  Identities=12%  Similarity=0.089  Sum_probs=107.3

Q ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHc--CCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          191 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL--GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       191 l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~--g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      +.++.+|.....+++......++.+++|+++++.  |++....  +.++..+++.+|++..|+++||+++|+..     .
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~-----~  313 (412)
T TIGR02332       239 IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH-----T  313 (412)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH-----H
Confidence            3467899988888888888888889999999885  5554433  77888999999999999999999876432     1


Q ss_pred             HHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      ....++.+++.++.. ..+....+....+.+++.....+.......|.+|++++|+++|+.+....+|+++ +|.+.|.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~-~p~~~g~i  392 (412)
T TIGR02332       314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL-SPFLIGIL  392 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh-hhhhcccc
Confidence            222223333322221 2222222222233333333333444555678899999999999999999999997 99999999


Q ss_pred             Hhhhh
Q 014462          346 YDYYA  350 (424)
Q Consensus       346 ~d~~~  350 (424)
                      .|..+
T Consensus       393 ~~~~g  397 (412)
T TIGR02332       393 KDATG  397 (412)
T ss_pred             cccCC
Confidence            98876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12382 putative transporter; Provisional

Probab=99.30  E-value=9.1e-11  Score=118.42  Aligned_cols=153  Identities=13%  Similarity=0.066  Sum_probs=115.0

Q ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHH
Q 014462          191 LMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  267 (424)
Q Consensus       191 l~~~~fwll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~  267 (424)
                      ..+..+|.+++..++...........+|.+ .+++|.|..+.  ..+...+...++++.+|+++||+|||+.+      .
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l------~   85 (392)
T PRK12382         12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA------L   85 (392)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH------H
Confidence            345566777666666655444455566765 46789987765  88999999999999999999999998755      3


Q ss_pred             HHHHHHHHHHH---HHH------hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHH
Q 014462          268 VAQVVMAFALL---YYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  338 (424)
Q Consensus       268 ~~~~~~~~~~l---l~~------~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~  338 (424)
                      .+.+..+++.+   +..      ..+.+.+++..++.|++.+...+...+.+.+.+++|+|+++.++..++..+|..+ +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~-g  164 (392)
T PRK12382         86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA-G  164 (392)
T ss_pred             HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH-H
Confidence            33333322221   111      1234567888999999999888888889999999999999999999999988887 8


Q ss_pred             HHHHHHHHhhhh
Q 014462          339 GVIASGIYDYYA  350 (424)
Q Consensus       339 ~~l~g~l~d~~~  350 (424)
                      |.+++.+.+..+
T Consensus       165 ~~~~~~l~~~~g  176 (392)
T PRK12382        165 APLGLLLHSHFG  176 (392)
T ss_pred             HHHHHHHHhccC
Confidence            999998887665

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.30  E-value=1.1e-10  Score=118.46  Aligned_cols=146  Identities=13%  Similarity=0.144  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhhhhH---HHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          196 FLLLFFSLVLASGSG---LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       196 fwll~~~~~~~~~~~---~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      -|.+....+.+....   ......+|.+.+++|.|..+.  .++...++..++.+..|+++||+|||+.+      ..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l------~~~~   81 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV------AISL   81 (393)
T ss_pred             HHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH------HHHH
Confidence            355555444443332   223346888899999987764  88899999999999999999999999866      6777


Q ss_pred             HHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          271 VVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  349 (424)
Q Consensus       271 ~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~  349 (424)
                      ++.+++.+..+ ..+.+.+++..++.|++.|..++..+.++.+.|+ ++++.+.++...+..+|..+ ++.+.+.+.+..
T Consensus        82 ~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-g~~~~~~l~~~~  159 (393)
T PRK09705         82 LLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL-GAAITPWLVQHS  159 (393)
T ss_pred             HHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            77777777766 4456778889999999999999999999999996 78999999999999999987 888888887765

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.29  E-value=9.1e-11  Score=121.36  Aligned_cols=192  Identities=12%  Similarity=0.084  Sum_probs=141.7

Q ss_pred             CCCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhccc
Q 014462          183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  259 (424)
Q Consensus       183 ~~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~  259 (424)
                      ...+++++++++.+|.++++.++.......+..++|.++++ +|++..+.  +.++..+.+.+.++++|.++||+-+| .
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~  325 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I  325 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence            46789999999999999999999999999999999999987 89986554  88899999999999999999999876 3


Q ss_pred             C----chhHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHH
Q 014462          260 Y----PRPVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG  333 (424)
Q Consensus       260 ~----~r~~~l~~~~~~~~~~~ll~~~~~--~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lg  333 (424)
                      +    -|+++-.++....++.++.+...+  ...+.+.....+.+..+....-.........+++-+...|+.+....++
T Consensus       326 ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~  405 (466)
T KOG2532|consen  326 LSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALA  405 (466)
T ss_pred             CchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHH
Confidence            3    366777777777777766655332  2212222222223322222222222222225788999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          334 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      +++ +|.+.|.+.... ++.                            -|+.+|++.+++.+++.+.-.++.
T Consensus       406 ~~~-~P~~vg~~~~~~-t~~----------------------------eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  406 GFI-APLLVGIIVTDN-TRE----------------------------EWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHH-HHHheeeEeCCC-CHH----------------------------HHHHHHHHHHHHHHHhchheeEee
Confidence            997 899999877421 221                            199999999999999886655554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.29  E-value=1.4e-09  Score=110.20  Aligned_cols=159  Identities=16%  Similarity=0.132  Sum_probs=113.0

Q ss_pred             hhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-
Q 014462          206 ASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-  281 (424)
Q Consensus       206 ~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-  281 (424)
                      ..+....+..++|.+.++ +|++....  +.+...+...+++++.|+++||+++|+..      ..+.....+....+. 
T Consensus       228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~  301 (393)
T PRK15011        228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM------RVAAVAGVCFYAGMLM  301 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHHH
Confidence            333444455678887754 78887644  55666677788999999999999988633      222222222222222 


Q ss_pred             hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 014462          282 IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  361 (424)
Q Consensus       282 ~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~  361 (424)
                      ..+++.+.+..++.+++.|...+..+....|.+|. ++|++.++.+....+|+.+ ++.+.|.++|..+           
T Consensus       302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~-g~~l~G~i~~~~g-----------  368 (393)
T PRK15011        302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWII-AGSLAGIVAEIWN-----------  368 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-----------
Confidence            23444555566677777887777778888999975 5899999999889999997 9999999999776           


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       362 ~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                                           |+..|.+.++++++++++.+..
T Consensus       369 ---------------------~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        369 ---------------------YHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHHhh
Confidence                                 9999998888887776665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.29  E-value=4.9e-10  Score=118.26  Aligned_cols=241  Identities=13%  Similarity=0.026  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHhhcccCCCCccc----------CCCCchhHHHHHHHHHHHHHHHHHHHhhc-ccccchHHHHHHHHHH
Q 014462           15 VGPSIVVMAFMFIVRPIGGHRQVR----------LSDNTSFLFTYTVCLILAAYMLAVLLLED-LEVANQNVLTVLAVGL   83 (424)
Q Consensus        15 ~~p~~v~~~~~~~~r~~~~~~~~~----------~~~~~~f~~~~~~~~~l~~~l~~~~~~~~-~~~~s~~~~~~~~~v~   83 (424)
                      ....+..++..++.+|+++.+.+.          +.|+.|..+   ++.+++.||+..+..+. +.+|+++..++..+++
T Consensus       204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L---~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG  280 (599)
T PF06609_consen  204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFL---FIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIG  280 (599)
T ss_pred             HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHH---HHHHHHHHHHHHhccCCCCCCCCCccchhhHHHH
Confidence            333333445566777776432211          345555555   78899999999998776 4689998888888888


Q ss_pred             HHHHHhhhhHhhhhhccCCCCCC--ccchhhcccccCcCCCcchhhhHhhhhcccCCCCCCCCCCChhhHHHHHHHHHHH
Q 014462           84 IIIILLPVTIPVVLVFFTEPPPP--VEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAK  161 (424)
Q Consensus        84 ~~ll~~Pl~i~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (424)
                      +++|.+.          .-+|..  .++|++|.+                                              
T Consensus       281 ~~~Lv~F----------~~wE~~~~~~~Pl~P~~----------------------------------------------  304 (599)
T PF06609_consen  281 FVLLVAF----------VVWEWFGAPKDPLFPHR----------------------------------------------  304 (599)
T ss_pred             HHHHHHH----------HHhhhhccCCCCcCCHH----------------------------------------------
Confidence            8877662          112221  123432221                                              


Q ss_pred             HHHHhhhhhHHHhhhcCCCCCCCCCHHHhhhh-HHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCch-----hHHHH
Q 014462          162 LFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK-ADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT-----SIYVS  234 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~-~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~-----~~~~s  234 (424)
                                                  ++++ +.|+...+..|+.....+...+..|+.... ++-+..     .....
T Consensus       305 ----------------------------Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~  356 (599)
T PF06609_consen  305 ----------------------------LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISS  356 (599)
T ss_pred             ----------------------------HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhh
Confidence                                        6665 456666666665555556666677777655 454432     23566


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHhhhhHhHHHHHHH
Q 014462          235 MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  311 (424)
Q Consensus       235 l~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~---~~~~~~l~~~~~l~G~~~G~~~~~~~~~~s  311 (424)
                      ..+++..+|.++.|.+.-+++|-|.     .+.++.+++.+++-+++   ..+....+...++.|++.|....+....+.
T Consensus       357 ~~~fg~~~g~~i~g~l~~~ir~~Kw-----~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~q  431 (599)
T PF06609_consen  357 PVGFGSCAGAVILGLLFSKIRHIKW-----QLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQ  431 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHccchhH-----HHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeE
Confidence            7788888999999998877754332     23344444443322333   233445567788999999988878877777


Q ss_pred             HhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          312 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       312 e~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      -..|.++.|++.++......+|+.+ +..++..++..
T Consensus       432 l~~p~~~ig~a~gL~~s~R~~GGsI-g~aIy~~I~~n  467 (599)
T PF06609_consen  432 LIVPDEDIGTATGLTGSIRSIGGSI-GYAIYNAIFTN  467 (599)
T ss_pred             eeeCchHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHh
Confidence            7888999999999999999999998 77777765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.28  E-value=2.9e-10  Score=114.65  Aligned_cols=158  Identities=11%  Similarity=-0.003  Sum_probs=120.2

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      .++++.++++.+|.+.+..++.......+.+.++.+.++.|++....  +.++..+...++++..|++.||+++|+.+  
T Consensus       196 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l--  273 (382)
T PRK11128        196 PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL--  273 (382)
T ss_pred             chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--
Confidence            46788999999998877766665555556667788888889886543  66677788888899999999999887644  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHH-HHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGV  340 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~-~~~~lgs~l~~~~  340 (424)
                          .++.++++++.+++. ..+++.+++..++.|++++...+....++.+. +.+++++.+++.+ ....+|..+ ||.
T Consensus       274 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i-g~~  347 (382)
T PRK11128        274 ----LLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAI-MTV  347 (382)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHH-HHH
Confidence                455555555555444 34556677788899999998888888888887 4666788899876 455667676 999


Q ss_pred             HHHHHHhhhh
Q 014462          341 IASGIYDYYA  350 (424)
Q Consensus       341 l~g~l~d~~~  350 (424)
                      ++|.++|+.+
T Consensus       348 i~G~l~~~~g  357 (382)
T PRK11128        348 LSGFLYQHLG  357 (382)
T ss_pred             HHHHHHHhcc
Confidence            9999999876

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.28  E-value=1.1e-09  Score=111.61  Aligned_cols=158  Identities=14%  Similarity=0.153  Sum_probs=108.2

Q ss_pred             CHHHhhhhHHHHHHHHH---HHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          186 TLPQALMKADFLLLFFS---LVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~---~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      ++++.++++.+|.....   .++..+....+..++|.+.++.|++....  +.++..+++.+|++.+|+++||++||+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            35567788877754432   22333333445678899998888876543  67788899999999999999999987543


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH--hhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 014462          261 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLS--YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  337 (424)
Q Consensus       261 ~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~--~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~  337 (424)
                            ..+.++.++..+.+. ........+..++.|++  ..+..+..+..+.|.+|++++|++.|+.+....+|+.+ 
T Consensus       300 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-  372 (426)
T PRK12307        300 ------SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF-  372 (426)
T ss_pred             ------HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH-
Confidence                  333333333333222 22112222333344443  23445667788999999999999999999999999987 


Q ss_pred             HHHHHHHHHhhhh
Q 014462          338 SGVIASGIYDYYA  350 (424)
Q Consensus       338 ~~~l~g~l~d~~~  350 (424)
                      +|.+.|++.|..+
T Consensus       373 gp~~~g~l~~~~g  385 (426)
T PRK12307        373 NSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHHHHccc
Confidence            9999999998876

>TIGR00896 CynX cyanate transporter

Probab=99.28  E-value=1.2e-10  Score=115.92  Aligned_cols=159  Identities=12%  Similarity=0.030  Sum_probs=118.1

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +.++.++++.+|.+.+..++.......+..++|++.++.|++....  +.++..++..++++..|++.||+++|+..   
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~---  265 (355)
T TIGR00896       189 TPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGI---  265 (355)
T ss_pred             CCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH---
Confidence            4567889999998877776666666777788999999899887554  88889999999999999999999654322   


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhC-cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg-~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                        +.++.++++++.+.+............++.|++.|..++...+.+.+..+ .++.|..+++.+....+++.+ +|.+.
T Consensus       266 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-gp~~~  342 (355)
T TIGR00896       266 --VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL-GPLFV  342 (355)
T ss_pred             --HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              13344444444443332221122235678899999998887777766654 456799999988888888887 99999


Q ss_pred             HHHHhhhh
Q 014462          343 SGIYDYYA  350 (424)
Q Consensus       343 g~l~d~~~  350 (424)
                      |.+.|..+
T Consensus       343 G~l~~~~g  350 (355)
T TIGR00896       343 GVLHDISG  350 (355)
T ss_pred             HHHHHHhc
Confidence            99999877

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.28  E-value=1.3e-09  Score=111.44  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=113.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCch-hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~-~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      +++.++++.+|.+.+..++............+.+.+. +|.+.. ..+.++..++..++.+++|+++||+++|+.+    
T Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~----  290 (437)
T TIGR00792       215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF----  290 (437)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----
Confidence            4457889999988777766655544443334444443 342222 2366677899999999999999999987644    


Q ss_pred             HHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhC-------cchhhHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPAGSL  335 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg-------~~~~g~~~g~~~~~~~lgs~  335 (424)
                        .++.++.+++.+++..  .+...+++..++.|++.|..++..+++++|..+       .++.|..+++.++...+|+.
T Consensus       291 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~  368 (437)
T TIGR00792       291 --AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA  368 (437)
T ss_pred             --HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence              4445555555444432  234455667788899999999889999888754       56789999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 014462          336 IFSGVIASGIYDYYA  350 (424)
Q Consensus       336 l~~~~l~g~l~d~~~  350 (424)
                      + ++.+.|.+.|..|
T Consensus       369 l-g~~i~g~ll~~~G  382 (437)
T TIGR00792       369 L-AGFLVGLILGIIG  382 (437)
T ss_pred             H-HHHHHHHHHHHcC
Confidence            7 9999999998766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.28  E-value=2e-10  Score=112.98  Aligned_cols=153  Identities=13%  Similarity=0.096  Sum_probs=116.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH---cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~---~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +.++++.+|+..+..|+..+...++.+|++.++.+   +|+++...  ..+.+..+..+||++.+++.||+++|+.+   
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l---  211 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL---  211 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence            46788999999999999998999999999999975   47776543  88899999999999999999999977643   


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                         .++.++.+++.+++...+........++.|++.+..++...+...+.+|. +.+.+.++. ....+|+.+ .|.+.|
T Consensus       212 ---~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i-~P~l~G  285 (310)
T TIGR01272       212 ---AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAI-VPLLQG  285 (310)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchH-HHHHHH
Confidence               33333333333333322222223466688999999999999999999964 456777775 566789987 799999


Q ss_pred             HHHhhhh
Q 014462          344 GIYDYYA  350 (424)
Q Consensus       344 ~l~d~~~  350 (424)
                      .+.|..+
T Consensus       286 ~lad~~g  292 (310)
T TIGR01272       286 SLADCLG  292 (310)
T ss_pred             HHHHhcc
Confidence            9999877

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00895 2A0115 benzoate transport

Probab=99.27  E-value=2.3e-10  Score=114.26  Aligned_cols=145  Identities=12%  Similarity=0.108  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      +.++.++...++..........++|.+.++.|++....  +.++..++..+|++++|+++||+++|+ .    . ....+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~----~-~~~~~  323 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-T----A-LLLLL  323 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-H----H-HHHHH
Confidence            34455555555555555566677887778889886543  778889999999999999999998762 2    1 22222


Q ss_pred             HHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          272 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       272 ~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      ......++.. ..+...+++..++.|++.+...+...+++.|.+|.+++|+.+|+.+....+|+.+ +|.+.|.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~G~l  397 (398)
T TIGR00895       324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII-GPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHhc
Confidence            2222222222 3445566778889999999999999999999999999999999999999999997 99999875

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.26  E-value=2.1e-10  Score=115.88  Aligned_cols=150  Identities=13%  Similarity=0.080  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      +++..+.+..+....+.......+|.+ .+++|.+..+.  ..+...++.+++.+..|+++||+|||+.+      ..+.
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~~   88 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFGL   88 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHHH
Confidence            344445444444444444444566764 46689887654  88899999999999999999999999866      4444


Q ss_pred             HHHHHHHHHHH---hc------hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          271 VVMAFALLYYA---IG------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       271 ~~~~~~~ll~~---~~------~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                      ++.+++.+.+.   ..      +...+++..++.|++.+...+.....+.+.++.++|+++.++...+..+|..+ ++.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l  167 (399)
T PRK05122         89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI-GAPL  167 (399)
T ss_pred             HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH-HHHH
Confidence            44433322211   11      23356778899999999998888889999999999999999988888888886 8999


Q ss_pred             HHHHHhhhh
Q 014462          342 ASGIYDYYA  350 (424)
Q Consensus       342 ~g~l~d~~~  350 (424)
                      ++.+.+..+
T Consensus       168 ~~~l~~~~g  176 (399)
T PRK05122        168 GVLLYHWGG  176 (399)
T ss_pred             HHHHHHccc
Confidence            998887665

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.26  E-value=6e-10  Score=111.81  Aligned_cols=134  Identities=16%  Similarity=0.231  Sum_probs=100.4

Q ss_pred             HHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH-HHHh-ch
Q 014462          210 GLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL-YYAI-GW  284 (424)
Q Consensus       210 ~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~l-l~~~-~~  284 (424)
                      ......++|.+.+ ++|++..+.  +.+...++..+|+++.|+++||+++|+.+      .++.++..+..+ ++.. .+
T Consensus       254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~  327 (405)
T TIGR00891       254 SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY------VCSLLAGQLLIIPVFAIGAN  327 (405)
T ss_pred             HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh------HHHHHHHHHHHHHHHHhCCc
Confidence            3345566787775 478887654  77888999999999999999999988654      233222212211 2222 23


Q ss_pred             hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          285 PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       285 ~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      .+.+.+..++.|++.+..+++.++.+.|.+|.+++|+..|+.+....+|+.+ +|.+.|.+.|+.|
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-g~~~~g~l~~~~g  392 (405)
T TIGR00891       328 VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL-APIIGALLAQRLD  392 (405)
T ss_pred             hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence            3344555567777777788888999999999999999999999999999997 9999999999877

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.26  E-value=2.2e-09  Score=108.32  Aligned_cols=176  Identities=18%  Similarity=0.116  Sum_probs=115.2

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++++|..+...+++.........+++.+.+ ..|++....  +.++.++++.+|+++.|++.||+++|+..      
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~------  268 (382)
T PRK10091        195 FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA------  268 (382)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH------
Confidence            456777887776666554444444445555554 478887654  78889999999999999999999987644      


Q ss_pred             HHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHhhhhHhHHH-HHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVP-AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~--~~~~~~l~~~~~l~G~~~G~~~~~~~-~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      .++..+++++.+++.  ..+.+...+..++.+++.+...++.. ....+..+.+..|...  .+....+|+.+ ||.++|
T Consensus       269 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~-Gp~~~G  345 (382)
T PRK10091        269 AVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAI-GAYCGG  345 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHH-HHHHhH
Confidence            344445555544332  22233344455556666554444333 3445555666666553  35667889987 999999


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      .++|..+                               .|+..+.+.+++++++......+.
T Consensus       346 ~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        346 MMLTLGL-------------------------------AYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HHHHccc-------------------------------CcchHHHHHHHHHHHHHHHHHHHh
Confidence            9999754                               199999998887777665544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.25  E-value=2.8e-10  Score=114.66  Aligned_cols=149  Identities=15%  Similarity=0.098  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      ++++|.++.+.++...........+|++.+++|.+..++  ..+...+++.++++..|+++||+|||+.+      ..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~------~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY------YLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHH
Confidence            556788888877766665556678999999999987654  88899999999999999999999998755      4555


Q ss_pred             HHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          271 VVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       271 ~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      ++.+++.+++. ..+.+.+++..++.|++.|..++.....+.+..+.++++++.+.......+|..+ |+.+.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~  156 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL-GQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccc
Confidence            55555555544 4556778888999999999988888888888998999999999999999999997 89988887654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.25  E-value=9.5e-11  Score=99.00  Aligned_cols=133  Identities=11%  Similarity=0.174  Sum_probs=106.7

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q 014462          234 SMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASE  312 (424)
Q Consensus       234 sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se  312 (424)
                      +...++..++++..|++.||++||+..      ..+..+..++.+.+. ..+.+.+.+..++.|++.+...+.....+.|
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVL------LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345778889999999999999988644      444444445444443 3455667778899999999999999999999


Q ss_pred             hhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHH
Q 014462          313 LFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAG  392 (424)
Q Consensus       313 ~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~  392 (424)
                      .++.+++++..++.+....+|..+ ++.+.+.+.+..+                                |+..|.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--------------------------------~~~~~~~~~~  125 (141)
T TIGR00880        79 IYPPEERGVALGLMSAGIALGPLL-GPPLGGVLAQFLG--------------------------------WRAPFLFLAI  125 (141)
T ss_pred             HCChhhhhHHHHHHHHhHHHHHHH-hHHhHHHHhcccc--------------------------------hHHHHHHHHH
Confidence            999999999999999999999997 8999999887655                                8899999888


Q ss_pred             HHHHHHHHHHHHh
Q 014462          393 LCIIAMVMSLIVV  405 (424)
Q Consensus       393 ~~~~~~~l~~~l~  405 (424)
                      +++++.+....+.
T Consensus       126 ~~~~~~~~~~~~~  138 (141)
T TIGR00880       126 LALAAFILLAFLL  138 (141)
T ss_pred             HHHHHHHHHhhcC
Confidence            8877766665443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.25  E-value=3e-10  Score=114.98  Aligned_cols=180  Identities=11%  Similarity=0.101  Sum_probs=133.1

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHc----CCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKF  258 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~----g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~  258 (424)
                      .+.++.++++++|.+.+..++.........++.+.+.++.    +.+...  ...++..+...++.+..|++.||+++|+
T Consensus       206 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~  285 (396)
T TIGR00882       206 KLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN  285 (396)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3567889999998776665554444444555677777663    233222  2667777888889999999999999886


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHH-HHHHHHHHHHH
Q 014462          259 AYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLI  336 (424)
Q Consensus       259 ~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~-~~~~~~lgs~l  336 (424)
                      ..      .++.+++++...++. ..+.+.+++..++.|++.+.........+.+.++.+.+++.++. .+....+|+.+
T Consensus       286 ~l------~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~  359 (396)
T TIGR00882       286 AL------LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF  359 (396)
T ss_pred             hH------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH
Confidence            54      455555555554433 34566667778888888877777777788888988888887776 56789999997


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          337 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       337 ~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                       ++.+.|+++|..|                                |+.+|.+.+++.++..+.+.+
T Consensus       360 -~~~l~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       360 -LSTLAGNMYDSIG--------------------------------FQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             -HHHhHHHHHHhcc--------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence             8999999999877                                999999999988887776654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.24  E-value=3e-10  Score=117.49  Aligned_cols=148  Identities=19%  Similarity=0.181  Sum_probs=108.0

Q ss_pred             CCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-------------chhHHHH
Q 014462          225 GYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-------------GWPGEIY  289 (424)
Q Consensus       225 g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-------------~~~~~l~  289 (424)
                      |.+...  ...+...++.++|.+++|+++||+|||+.+      .++.+++.++.+..+.             .....++
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV  124 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence            555544  388999999999999999999999999865      4444555544443322             1124567


Q ss_pred             HHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 014462          290 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  369 (424)
Q Consensus       290 ~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      ++.++.|++.|..++..+++++|++|+|+||+..++...+..+|..+ ++.+.+.+.......                 
T Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~-----------------  186 (479)
T PRK10077        125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV-VYFVNYFIARSGDAS-----------------  186 (479)
T ss_pred             HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhccCccc-----------------
Confidence            88999999999999999999999999999999999999999999886 665555443322100                 


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          370 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       370 ~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                            . .+...||+.|++.++..++..+..++
T Consensus       187 ------~-~~~~gWr~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        187 ------W-LNTDGWRYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             ------c-cccCChHHHHHHHHHHHHHHHHHHHc
Confidence                  0 01113999999888877776554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.23  E-value=6.5e-10  Score=113.64  Aligned_cols=146  Identities=13%  Similarity=0.001  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          196 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       196 fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      ++.+...+++...........+|++.+++|.+..+.  ..+...++..++.+..|++.||+|+|+.+      .++.+++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~------~~g~~l~   78 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI------LLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHH
Confidence            454444444333222222345688888899987654  88899999999999999999999998765      6677777


Q ss_pred             HHHHHHHHh----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          274 AFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       274 ~~~~ll~~~----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      +++.+++..    .+.+.+++..++.|++.|...+...+++.+..+.+++++..++.+....+|+.+ +|.+.+.+...
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-g~~i~~~l~~~  156 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII-GMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            777766432    245667788899999999999999999999999999999999999999999997 89998877533

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.23  E-value=1.4e-10  Score=118.36  Aligned_cols=123  Identities=21%  Similarity=0.280  Sum_probs=96.0

Q ss_pred             HHhcHHHHHHHcCCC--------chh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-
Q 014462          213 VIDNLGQICQSLGYA--------DTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-  281 (424)
Q Consensus       213 ~~~~l~~i~~~~g~s--------~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-  281 (424)
                      +...++.+..+++.+        ..+  ...+...++..++.+.+|+++||+|||+.+      .++.++.+++.++.. 
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~------~~~~~~~~~~~~~~~~  120 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL------LIIALLFVIGAILMGL  120 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH------HHHHHHHHHHHHHHHH
Confidence            334456666665554        333  388899999999999999999999998654      455555555554442 


Q ss_pred             hc---hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          282 IG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       282 ~~---~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      ..   +.+.+++..++.|++.|..++...++++|.++.++|+++.++.+.+..+|..+ ++.+.
T Consensus       121 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~  183 (481)
T TIGR00879       121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFG  183 (481)
T ss_pred             hccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHH
Confidence            12   23367889999999999999999999999999999999999999999999997 78776

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15075 citrate-proton symporter; Provisional

Probab=99.22  E-value=8.8e-10  Score=113.20  Aligned_cols=155  Identities=12%  Similarity=0.061  Sum_probs=102.5

Q ss_pred             HhhhhHHHHHHHH-HHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          189 QALMKADFLLLFF-SLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       189 ~~l~~~~fwll~~-~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      +..++++.|.... ..++.......+..++|.++++ +|++..+.  +..+.++++.++++.+|+++||++||+..    
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~----  307 (434)
T PRK15075        232 SLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL----  307 (434)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----
Confidence            3445555554432 2333334455567789999876 79987654  66678889999999999999999987643    


Q ss_pred             HHHHHHHHHHH-HHHH--HH-h-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHH-HHHHHHHHHH
Q 014462          265 AMAVAQVVMAF-ALLY--YA-I-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSLIFS  338 (424)
Q Consensus       265 ~l~~~~~~~~~-~~ll--~~-~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~-~~~lgs~l~~  338 (424)
                        ..+.++.++ ....  .. . .+...+.+..++.|++.|...+..+.+++|.+|.+.+|+..++.+. +..+++.+ +
T Consensus       308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~-~  384 (434)
T PRK15075        308 --IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGF-T  384 (434)
T ss_pred             --HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhh-H
Confidence              121111111 1111  11 1 1222333445566778887777778899999999999999998644 44455665 8


Q ss_pred             HHHHHHHHhhhh
Q 014462          339 GVIASGIYDYYA  350 (424)
Q Consensus       339 ~~l~g~l~d~~~  350 (424)
                      |.+.|.+.|..+
T Consensus       385 p~~~g~i~~~~g  396 (434)
T PRK15075        385 PAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999876

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.21  E-value=1.3e-09  Score=114.01  Aligned_cols=180  Identities=12%  Similarity=0.115  Sum_probs=125.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCCchhH--HH-HHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YV-SMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~~-sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +++.++++.+|.+....++..........+.++++ +++|++..+.  +. ....++..+|.+++|+++||+++|+..  
T Consensus       215 l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l--  292 (491)
T PRK11010        215 LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL--  292 (491)
T ss_pred             HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence            44566677777665554444433344445666665 4589988765  33 345578999999999999999987533  


Q ss_pred             hHHHHHHHHHHHHH---HHHHHh--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFA---LLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  337 (424)
Q Consensus       263 ~~~l~~~~~~~~~~---~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~  337 (424)
                          .++.++.+++   ...+..  .+...+....++..++.|...+...+...++.+.+..|+.+++.+....+|..+ 
T Consensus       293 ----~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~-  367 (491)
T PRK11010        293 ----MIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY-  367 (491)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH-
Confidence                2222222222   222222  222334445566666667666777888899999889999999999999999987 


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          338 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       338 ~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      ++.+.|.++|..|                                |+..|.+.+++++.+.++...++
T Consensus       368 ~~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        368 VGPVAGWFVEAHG--------------------------------WPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778999999776                                99999999999999877776654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.20  E-value=3.4e-10  Score=115.53  Aligned_cols=174  Identities=14%  Similarity=0.088  Sum_probs=114.7

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++++|.+.+..++...+...+...++.++++ +|++..+.  ..+...+...++++.+|+++||+|||+.+      
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~------   79 (420)
T PRK09528          6 YLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL------   79 (420)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------
Confidence            6678899999888888877666667778888766 89998765  89999999999999999999999988754      


Q ss_pred             HHHHHHHHHHHH---HHHhchhH--HHHHHHHHHHHHhh----hhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALL---YYAIGWPG--EIYVTTVLVGLSYG----AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  337 (424)
Q Consensus       267 ~~~~~~~~~~~l---l~~~~~~~--~l~~~~~l~G~~~G----~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~  337 (424)
                      .++..+.+++..   .+......  .......+.++..|    ...+...... +.+ .+++|..+|.......+|..+ 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i-  156 (420)
T PRK09528         80 LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWAL-  156 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHH-
Confidence            222222221111   11111100  11112222233333    3222333332 323 345688889989999999997 


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          338 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       338 ~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      +|.++|.+++. +                                |+..|++.++++++..++.+.+.
T Consensus       157 ~~~~~g~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        157 CAFIAGILFNI-N--------------------------------PQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HHHHHHHHHhc-C--------------------------------chHhHHHHHHHHHHHHHHHhccc
Confidence            89999988763 3                                78889888888777666655444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.20  E-value=1.4e-08  Score=103.01  Aligned_cols=155  Identities=9%  Similarity=0.037  Sum_probs=109.2

Q ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHhcH-HHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          188 PQALMKADFLLLFFSLVLASGSGLTVIDNL-GQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       188 ~~~l~~~~fwll~~~~~~~~~~~~~~~~~l-~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      ++.++++.+|...+..++..........+. |.+.+++|++....  ..+..++++.+|+++.|++.||.+++ .     
T Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~-----  283 (394)
T PRK10213        210 FRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-A-----  283 (394)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-H-----
Confidence            347788999987766666555555555555 55666789887654  67778889999999999998884322 1     


Q ss_pred             HHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      ......+......++.. ..+.+.+++..++.|++++...+..++.+.+..+ ++.+...++......+|..+ |+.++|
T Consensus       284 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~-G~~l~G  361 (394)
T PRK10213        284 LAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC-GAAIGG  361 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            11222222222222222 3345566778888999999999888888888886 55677888877888899987 999999


Q ss_pred             HHHhhhh
Q 014462          344 GIYDYYA  350 (424)
Q Consensus       344 ~l~d~~~  350 (424)
                      .++|..+
T Consensus       362 ~l~~~~g  368 (394)
T PRK10213        362 YALDNIG  368 (394)
T ss_pred             HHHhccC
Confidence            9999876

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.19  E-value=1.2e-09  Score=111.77  Aligned_cols=159  Identities=10%  Similarity=0.061  Sum_probs=127.0

Q ss_pred             cHHHHHHHcCCCchh-H--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHH
Q 014462          216 NLGQICQSLGYADTS-I--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVT  291 (424)
Q Consensus       216 ~l~~i~~~~g~s~~~-~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~  291 (424)
                      ..|.+.+++|+++.+ .  +.+.+..+..+..+.+|+++||+|.|+.+      .++.+.-++..++.. ..+...+.+.
T Consensus        48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL------~l~~l~Wsl~t~L~~fa~Sl~~L~i~  121 (511)
T TIGR00806        48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL------VLQALSFVCVWLLLLLGTSVWHMQLM  121 (511)
T ss_pred             HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677889999887 3  88999999999999999999999988755      444444444444433 3456788999


Q ss_pred             HHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCC
Q 014462          292 TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRD  371 (424)
Q Consensus       292 ~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  371 (424)
                      .++.|++.|..+ ....++..+||+++|+++.++.+.+..+|.++ ++++++. ....+.+                   
T Consensus       122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~ql-l~s~gWr-------------------  179 (511)
T TIGR00806       122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQL-LVTLGWI-------------------  179 (511)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHhcCch-------------------
Confidence            999999999999 99999999999999999999999999999998 8888888 3334421                   


Q ss_pred             CCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014462          372 QETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  412 (424)
Q Consensus       372 ~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~~  412 (424)
                                .|+...++..+...+++++++++...+|..|
T Consensus       180 ----------~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~  210 (511)
T TIGR00806       180 ----------SYSTLNIISLVFMTFSVFLALFLKRPKRSLF  210 (511)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence                      2777788888888889999988876555433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.19  E-value=9.7e-10  Score=114.80  Aligned_cols=142  Identities=13%  Similarity=0.023  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCC--Cch-hH-----HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGY--ADT-SI-----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  268 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~--s~~-~~-----~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~  268 (424)
                      +...++.++-......+....|.+.++++.  ++. +.     ..++..++..+|.+..|+++||+|||+.+      .+
T Consensus        19 ~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~~   92 (490)
T PRK10642         19 TAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL------AI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH------HH
Confidence            334444444433333444456667677643  222 11     23566688889999999999999999765      66


Q ss_pred             HHHHHHHHHHHHHhc-hhH--------HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 014462          269 AQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       269 ~~~~~~~~~ll~~~~-~~~--------~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                      +.++++++.++.+.. +..        .+.+..++.|++.|+.++...++++|++|+|+||+..++...+..+|..+ ++
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~l-g~  171 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVL-GA  171 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-HH
Confidence            677777777666543 322        36788999999999999999999999999999999999988888888775 66


Q ss_pred             HHHHHH
Q 014462          340 VIASGI  345 (424)
Q Consensus       340 ~l~g~l  345 (424)
                      .+...+
T Consensus       172 ~~~~~~  177 (490)
T PRK10642        172 GVVVLI  177 (490)
T ss_pred             HHHHHH
Confidence            555444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.18  E-value=9.7e-10  Score=109.49  Aligned_cols=157  Identities=12%  Similarity=-0.020  Sum_probs=113.2

Q ss_pred             HHHHhcHHHHH-HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhH
Q 014462          211 LTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPG  286 (424)
Q Consensus       211 ~~~~~~l~~i~-~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~  286 (424)
                      ......+|.+. +++|.+....  ..+...+...+..+..|+++||+||||.+     +..+.++.+++.++++ ..+.+
T Consensus        14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~-----~~~~~~~~~~~~~~~~~~~~~~   88 (375)
T TIGR00899        14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL-----ILFCCLLAALACLLFAWNRNYF   88 (375)
T ss_pred             HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-----HHHHHHHHHHHHHHHHhcchHH
Confidence            33444566655 5689887654  77888889999999999999999987643     1223333344433444 34455


Q ss_pred             HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCC
Q 014462          287 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL--YNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNM  364 (424)
Q Consensus       287 ~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~--~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~  364 (424)
                      .+++..++.|.+.+...+...+.+.|..+.+.++..  .+.......+|..+ +|.+.+.+.+..+              
T Consensus        89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~~--------------  153 (375)
T TIGR00899        89 LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVI-GPPLAFWLALGFG--------------  153 (375)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH-hhhHHHHHHHhcc--------------
Confidence            666667777777777777777888888877666643  67778888899987 8999999988766              


Q ss_pred             CCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          365 LPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       365 ~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                        |++.|++.+.++++..++.+.+.
T Consensus       154 ------------------~~~~f~~~~~~~~~~~~~~~~~~  176 (375)
T TIGR00899       154 ------------------FTVMFLTAALAFVLCGVLVWLFL  176 (375)
T ss_pred             ------------------cHHHHHHHHHHHHHHHHHHHHhC
Confidence                              99999999988777766665533

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.18  E-value=6.1e-10  Score=112.72  Aligned_cols=173  Identities=15%  Similarity=0.127  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  269 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~  269 (424)
                      ||++|.+....++...+...+...+|.+.++ +|++..+.  ..++..+...++++..|+++||+|||+.+.   ...+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~---~~~~~   77 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLL---WIISG   77 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH---HHHHH
Confidence            5789999888888877776777788887765 79988765  899999999999999999999999987651   11111


Q ss_pred             HHHHHHHHHHHHhch------hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          270 QVVMAFALLYYAIGW------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       270 ~~~~~~~~ll~~~~~------~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      ..+.......+....      ...+.+..++.|++++...+....++.+.-  ++.+..+|.......+|..+ +|.++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~-g~~~~g  154 (396)
T TIGR00882        78 LLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWAL-CASIAG  154 (396)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHH-HHHHHh
Confidence            111111111111111      112344556677777777777666666643  33456777888888899987 899988


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                      .+++. +                                |+..|++.+.+.++..++.+..
T Consensus       155 ~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       155 ILFSI-D--------------------------------PQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             hhhcc-C--------------------------------chHHHHHHHHHHHHHHHHHHHh
Confidence            87653 4                                8999999888888776655443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.18  E-value=1.6e-09  Score=111.30  Aligned_cols=126  Identities=16%  Similarity=0.102  Sum_probs=91.3

Q ss_pred             HHhcHHHHHHHcC---CCchhH-----HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-c
Q 014462          213 VIDNLGQICQSLG---YADTSI-----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-G  283 (424)
Q Consensus       213 ~~~~l~~i~~~~g---~s~~~~-----~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~  283 (424)
                      +..-.|.+.++++   .+..+.     ..+...++..+|.+.+|+++||+|||+.+      ..+.++++++.++.+. .
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l------~~~~~~~~~~~~~~~~~~  114 (432)
T PRK10406         41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM------LISVCMMCFGSLVIACLP  114 (432)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHHHHHHHhhcC
Confidence            3344566667764   343321     34455566668999999999999999865      5566666666555443 2


Q ss_pred             h--------hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          284 W--------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       284 ~--------~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      +        +..+++..++.|++.|+.++...++++|.+|+++||...++...+...|..+ ++.+.+.+
T Consensus       115 ~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~  183 (432)
T PRK10406        115 GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL-ALLVVVVL  183 (432)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            2        2357788999999999999999999999999999999999888777777765 66554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.18  E-value=2.6e-08  Score=100.94  Aligned_cols=185  Identities=15%  Similarity=0.110  Sum_probs=138.0

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCch---h---HHHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT---S---IYVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~---~---~~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      ..+++|+++||.+.+...........+....+.+.+.+--+..   +   ...++..+..++.-..+.++.+|+|.|+.+
T Consensus       213 ~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L  292 (412)
T PF01306_consen  213 VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL  292 (412)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH
Confidence            3458999999987665444333444444456666666433321   1   267777788888999999999999988755


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHH-HHHHHHHHHHHH
Q 014462          261 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS  338 (424)
Q Consensus       261 ~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~-~~~~~lgs~l~~  338 (424)
                            .++.+++++=....+ ..+++.+.+.-.+.|+-++.......-++++.|++|-.++.|.+. +.+.++|..++ 
T Consensus       293 ------llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~-  365 (412)
T PF01306_consen  293 ------LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL-  365 (412)
T ss_dssp             ------HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH-
T ss_pred             ------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH-
Confidence                  555566665555555 456778888899999999999999999999999999999999996 68899999985 


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          339 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       339 ~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      ..++|.+||+.|                                |+.+|++++++.+...+++.+..++.++
T Consensus       366 s~~~G~lyd~~G--------------------------------~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  366 SPLAGYLYDRIG--------------------------------FQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             hhhHHhhHhhcC--------------------------------cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            778999999998                                9999999999988888888776655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.18  E-value=2.5e-09  Score=111.85  Aligned_cols=172  Identities=13%  Similarity=0.069  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH-HHHHHHHHhhhhhhhhhhhhhhh-----hhcccCchhHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAM  266 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~~sl~si~~~~gr~~~G~lsd~~-----g~k~~~~r~~~l  266 (424)
                      +++.+.++...+............+|.+.++.|.+..++ ..+..+... ++++++|.++||+     ||||.     ++
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~-----~l   84 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG-----WL   84 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHcccccCCCCchH-----HH
Confidence            334444444444443344455567888889899887766 444444443 6899999999999     66543     34


Q ss_pred             HHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      .+++++++++...++.    .+.+.+.+..++.|++.+.......+++.|+++.++||+..++...+..+|..+ ++.+.
T Consensus        85 l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll-g~~l~  163 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV-SGGLA  163 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH-HHHHH
Confidence            5666666666554433    234567777888899999999999999999999999999999999999999997 88888


Q ss_pred             HHHHhh-hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          343 SGIYDY-YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       343 g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                      +.+.+. .+                                ||.+|++.+++.++..+..+.
T Consensus       164 ~~l~~~~~G--------------------------------Wr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        164 LWLADRYLG--------------------------------WQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHHHhcccC--------------------------------HHHHHHHHHHHHHHHHHHHHh
Confidence            888873 34                                999999999888877665554

>PTZ00207 hypothetical protein; Provisional

Probab=99.18  E-value=1.5e-09  Score=114.99  Aligned_cols=166  Identities=11%  Similarity=0.095  Sum_probs=117.7

Q ss_pred             HHHHHHHHhhhhHH--HHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          198 LLFFSLVLASGSGL--TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       198 ll~~~~~~~~~~~~--~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      .+..+.++...++.  ++....+++.+++|++..+.  +.++ +....++.+.+|+++||+|+|+.+      .++.++.
T Consensus        29 ~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vl------lig~ll~  101 (591)
T PTZ00207         29 LLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIF------VLSMTVF  101 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHH
Confidence            44444444443443  34445677888899998764  3333 222334566789999999988655      6677777


Q ss_pred             HHHHHHHHh-------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          274 AFALLYYAI-------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       274 ~~~~ll~~~-------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      +++.++.+.       .+.+.+++..++.|++.+..++....++.++|| ++||.+.|+...+..+|+.+++++..+.+.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766553       256678888999999998888888889999996 788999999999999999986665555443


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          347 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       347 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                        .+                                |+..|++++.+.++..++.+.+.
T Consensus       181 --~~--------------------------------~~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        181 --DN--------------------------------TSAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             --Hh--------------------------------HHHHHHHHHHHHHHHHHHHHhhe
Confidence              22                                77788888887777666655544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.17  E-value=2.7e-10  Score=117.87  Aligned_cols=143  Identities=12%  Similarity=0.100  Sum_probs=114.3

Q ss_pred             HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH--H-hchhHHHHHHHHHHHH
Q 014462          223 SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY--A-IGWPGEIYVTTVLVGL  297 (424)
Q Consensus       223 ~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~--~-~~~~~~l~~~~~l~G~  297 (424)
                      ++|++....  +.+.+.++..++.+.+|+++||+|+|+.+      ..+.++.+++.++.  + ..+...+++..++.|+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~  143 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL  143 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            456665543  88899999999999999999999998765      44444444444433  2 2234567888999999


Q ss_pred             HhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhccCCCCCcccCCCCCCc
Q 014462          298 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-AEKQAGLLWKYNGNMLPVSFRDQETPT  376 (424)
Q Consensus       298 ~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (424)
                      +.|..++....+++|++|.++||+..++...+..+|..+ ++.+.+.+.+.. +                          
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~~g--------------------------  196 (465)
T TIGR00894       144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESWGG--------------------------  196 (465)
T ss_pred             hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC--------------------------
Confidence            999999999999999999999999999999999999997 899999988763 5                          


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          377 CLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       377 c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                            |+.+|++.+++.++..++...+
T Consensus       197 ------w~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       197 ------WPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             ------CCeehhhhhHHHHHHHHHHHHH
Confidence                  9999999988776665554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.17  E-value=4e-09  Score=120.98  Aligned_cols=156  Identities=14%  Similarity=0.081  Sum_probs=119.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      ++.+.+++.+|.+.+..++.......+..++|.+.++ +|.+....  +.+.++++..+|.++.|+++++..+++..+  
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~--  295 (1140)
T PRK06814        218 LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP--  295 (1140)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh--
Confidence            4557788889998888877777777777789999876 78876543  888999999999999999998877665441  


Q ss_pred             HHHHHHHHHHHHHHHHHHh---------------------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHH
Q 014462          264 VAMAVAQVVMAFALLYYAI---------------------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL  322 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~---------------------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~  322 (424)
                          .+.++++++.+.+..                     .+.+.+++..++.|++.|.......+++.+.+|.+++|+.
T Consensus       296 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v  371 (1140)
T PRK06814        296 ----IGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARV  371 (1140)
T ss_pred             ----HHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceee
Confidence                112222221111111                     3445567788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          323 YNFLTLASPAGSLIFSGVIASGIYDYY  349 (424)
Q Consensus       323 ~g~~~~~~~lgs~l~~~~l~g~l~d~~  349 (424)
                      +|+.++...+|..+ ++.+.|.+++..
T Consensus       372 ~g~~~~~~~~~~~i-g~~~~g~l~~~~  397 (1140)
T PRK06814        372 IAANNVLNAAFMVA-GTIILALLQALG  397 (1140)
T ss_pred             eHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            99999999999987 899999887643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.16  E-value=1.7e-08  Score=102.48  Aligned_cols=172  Identities=12%  Similarity=0.128  Sum_probs=107.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHH-hcHHHHHHHcCCCchhH--HHHHHH-HHhhhhhhhhhhhhhhhhhcccCch
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~-~~l~~i~~~~g~s~~~~--~~sl~s-i~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +++.++++.+|.+.+..++......... .+.+.+.+++|++..+.  +....+ +...+|.+++|++.||+++|+..  
T Consensus       202 ~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l--  279 (402)
T PRK11902        202 LRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL--  279 (402)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence            4457888888877666555443322222 23344455689887655  333433 46789999999999999987643  


Q ss_pred             hHHHHHHHHHHHHH---HHHHHh--chhHHHHHHHH----HHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFA---LLYYAI--GWPGEIYVTTV----LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG  333 (424)
Q Consensus       263 ~~~l~~~~~~~~~~---~ll~~~--~~~~~l~~~~~----l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lg  333 (424)
                          .++.++..+.   ..++..  .+.+.+++..+    ..|++.+...+....++++.+|.+++    ++.+....+|
T Consensus       280 ----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~  351 (402)
T PRK11902        280 ----MLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVG  351 (402)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHH
Confidence                2222222222   222222  23344444443    44555666677777777777775554    4555556777


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 014462          334 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  401 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~  401 (424)
                      +.+ ++.++|.++|+.|                                |+..|.+.+.+++++.++.
T Consensus       352 ~~~-~~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        352 RVY-VGPTSGYLVEAYG--------------------------------WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHH-HHHHHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHH
Confidence            776 4568999999988                                9999999998888876554

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.15  E-value=7.8e-10  Score=115.04  Aligned_cols=133  Identities=12%  Similarity=0.139  Sum_probs=95.8

Q ss_pred             HHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-h--ch
Q 014462          211 LTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-I--GW  284 (424)
Q Consensus       211 ~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~--~~  284 (424)
                      .....++|.+++ ++|++..+.  +.+...++..+|++..|+++||+++|+.+      .++..+..+..+++. .  ..
T Consensus       292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~  365 (496)
T PRK03893        292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY------VCSLLISQLLIIPVFAIGGAN  365 (496)
T ss_pred             chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHhhccccH
Confidence            345567899985 689987654  88889999999999999999999987643      233333333322222 1  12


Q ss_pred             hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          285 PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       285 ~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      .+.+.+..++.++...+..+..+++++|.+|.+++|+.+++.+....+|+.+ +|.+.|.+.|+.+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l-gp~l~g~l~~~~g  430 (496)
T PRK03893        366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGAL-APILGALIAQRLD  430 (496)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHH-HHHHHHHHhccCC
Confidence            2223333344444333445677889999999999999999999999999997 9999999999877

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.15  E-value=8.5e-10  Score=126.53  Aligned_cols=159  Identities=9%  Similarity=0.056  Sum_probs=112.5

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHH-----HHHcCCCchh---HHHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQI-----CQSLGYADTS---IYVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i-----~~~~g~s~~~---~~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      .++++++|+.++++.++.........+.+..+     ..+.+.+...   ...+++.+...+..+++|+++||++||+.+
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~   85 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA   85 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence            36788888888777776655432222222211     1122222222   255677788899999999999999998743


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          261 PRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       261 ~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                      .  ....+..+.+.++.+.+...+.+.+++..++.|++.+..++...+++.++++.++++.+.++.+++..+|..+ ||.
T Consensus        86 ~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i-gp~  162 (1140)
T PRK06814         86 K--ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL-GTI  162 (1140)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH-HHH
Confidence            1  1112222222222222334567889999999999999999999999999999999999999999999999997 999


Q ss_pred             HHHHHHhhhh
Q 014462          341 IASGIYDYYA  350 (424)
Q Consensus       341 l~g~l~d~~~  350 (424)
                      ++|.+.+..+
T Consensus       163 l~g~l~~~~~  172 (1140)
T PRK06814        163 IGGLATISGN  172 (1140)
T ss_pred             HHHHHHhccc
Confidence            9999988665

>PRK09952 shikimate transporter; Provisional

Probab=99.15  E-value=4.7e-09  Score=108.12  Aligned_cols=105  Identities=18%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-hhH--------HHHHHHHHHHHHhhhhHhHH
Q 014462          236 ISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIV  306 (424)
Q Consensus       236 ~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-~~~--------~l~~~~~l~G~~~G~~~~~~  306 (424)
                      ..++..+|.+..|+++||+|||+.+      .++.++++++.++.+.. +..        .+++..++.|++.|+.++..
T Consensus        73 ~~~~~~~g~~~~G~l~Dr~Grr~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~  146 (438)
T PRK09952         73 GFLFRPLGGVVFGHFGDRLGRKRML------MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGA  146 (438)
T ss_pred             HHHHHhhHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence            3455668888899999999998765      55666666666665533 222        46778999999999999999


Q ss_pred             HHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          307 PAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       307 ~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                      ..+++|.+|.|+||...+....+..+|..+ ++.+.+.+..
T Consensus       147 ~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l-~~~~~~~l~~  186 (438)
T PRK09952        147 ALLAVESAPKNKKAFYSSGVQVGYGVGLLL-STGLVSLISM  186 (438)
T ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999988876 7766666543

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=1.5e-09  Score=107.98  Aligned_cols=146  Identities=12%  Similarity=0.123  Sum_probs=115.2

Q ss_pred             HhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 014462          214 IDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVT  291 (424)
Q Consensus       214 ~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~  291 (424)
                      ...+|++.+++|++..+.  ..++..++..++.+..|+++||+|+|+.+      .++.++.+++.+.....+.+.+++.
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~l~~~   93 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV------AAGLLLIAAGILIRSAPGTALLFAG   93 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH------HHHHHHHHHHHHHHHhccHHHHHHH
Confidence            446888999999987765  88899999999999999999999998754      4444444444444334455667788


Q ss_pred             HHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCC
Q 014462          292 TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRD  371 (424)
Q Consensus       292 ~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  371 (424)
                      .++.|++.|...+..+..+.+.++ ++++++.++.+.+..+|..+ ++.+.+.+.+..+.                    
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~~~~--------------------  151 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL-AAAATVPLAQHSGG--------------------  151 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh--------------------
Confidence            889999999888888889999995 68999999999999999987 88888888765431                    


Q ss_pred             CCCCcccCCcchHHHHHHHHHHHHHH
Q 014462          372 QETPTCLGSICYSITCGIMAGLCIIA  397 (424)
Q Consensus       372 ~~~~~c~g~~c~~~~f~i~a~~~~~~  397 (424)
                                .|+..|.+.+++++++
T Consensus       152 ----------~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       152 ----------HWQQALAWWALPALLA  167 (355)
T ss_pred             ----------hHHHHHHHHHHHHHHH
Confidence                      1899998887765554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.12  E-value=2.8e-09  Score=108.47  Aligned_cols=158  Identities=10%  Similarity=0.091  Sum_probs=104.3

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhh-hhhhcccCch
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSE-AIVRKFAYPR  262 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd-~~g~k~~~~r  262 (424)
                      ++++.+++++++...+..+...........++|.+.++.+.++.+.  +.++.++....+....+...| |++.++..  
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--  277 (400)
T PRK11646        200 GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRL--  277 (400)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH--
Confidence            4566888888887655544433333334557888888865554433  445555544443333344444 34333221  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                          ..+.++.+++.+++. ..+.+.+.+..++.|++.+...+...+.+.+..|.+++|+.+++.+....+|+.+ ||.+
T Consensus       278 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-g~~l  352 (400)
T PRK11646        278 ----MAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI-GYIG  352 (400)
T ss_pred             ----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh-cccc
Confidence                344445555554444 2334445556677888888888888999999999999999999999999999997 9999


Q ss_pred             HHHHHhhhh
Q 014462          342 ASGIYDYYA  350 (424)
Q Consensus       342 ~g~l~d~~~  350 (424)
                      .|.++|..+
T Consensus       353 ~G~l~~~~~  361 (400)
T PRK11646        353 GGWLFDLGK  361 (400)
T ss_pred             hHHHHHHHh
Confidence            999999865

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.12  E-value=5.3e-09  Score=105.96  Aligned_cols=175  Identities=11%  Similarity=0.027  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCCchhH--HHHHHHH-HhhhhhhhhhhhhhhhhhcccCchhHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  268 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~~sl~si-~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~  268 (424)
                      |.+.|.+++..++...........++.+. +++|.+.++.  .++...+ +..++.+.+|+ +||+|+||.+     +..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~-----~~~   87 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSL-----IVF   87 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHH-----HHH
Confidence            55667777777766655555556666655 5689988765  4444444 55556666676 8999998753     122


Q ss_pred             HHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          269 AQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF--GALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       269 ~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~--g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      +.++.+++..+++. .+.+.+++...+.|...+...+....++.+..+++.+  +...++.+++.++|..+ +|.++|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~i~~~l  166 (393)
T PRK15011         88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVI-GPPLAYAL  166 (393)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence            23333344433333 3344444444444444445666667777777765544  34447888899999997 99999999


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          346 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      .+..+                                ||.+|++.+.++++..+..++..+
T Consensus       167 ~~~~g--------------------------------w~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        167 AMGFS--------------------------------FTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             HHhcC--------------------------------hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            98777                                999999999888777666554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.11  E-value=4e-09  Score=107.05  Aligned_cols=156  Identities=13%  Similarity=-0.116  Sum_probs=111.8

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +++.++++++|.+.+..++............|.+.+ ++|+++.+.  ......++..+|++..|+++||+++|+..   
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~---  284 (406)
T PRK15402        208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI---  284 (406)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            345788899998877766665555555556777764 478887654  44556678889999999999999887644   


Q ss_pred             HHHHHHHHHHHHHHHHHHh------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  337 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~  337 (424)
                         .++.++++++.+++..      .+...+++..++.|++.|...+.......... .+++|+..++.++...+|..+ 
T Consensus       285 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~-  359 (406)
T PRK15402        285 ---RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFTV-  359 (406)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHHH-
Confidence               3444444444443321      22345667788889998887766655554333 478999999999999999986 


Q ss_pred             HHHHHHHHHhhhh
Q 014462          338 SGVIASGIYDYYA  350 (424)
Q Consensus       338 ~~~l~g~l~d~~~  350 (424)
                      |+.+.|.+++..+
T Consensus       360 g~~~~~~l~~~~~  372 (406)
T PRK15402        360 GIELSKHAYLGGG  372 (406)
T ss_pred             HHHHHHhcccCCc
Confidence            9999999998776

>PRK10054 putative transporter; Provisional

Probab=99.11  E-value=1.2e-09  Score=110.89  Aligned_cols=176  Identities=10%  Similarity=-0.044  Sum_probs=122.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH---cCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCc
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP  261 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~---~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~  261 (424)
                      .++.++++++|.+.+..++.......+..+.+++...   .+.+...  .+.+..++.....++..|++.||.++|+.. 
T Consensus       199 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-  277 (395)
T PRK10054        199 PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM-  277 (395)
T ss_pred             hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH-
Confidence            4667889999888777766655554455566666543   2333332  255555566666777888888988776533 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 014462          262 RPVAMAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       262 r~~~l~~~~~~~~~~~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                           ..+.++++++.+.+..  .+.+.+.+..++.|++.+...+...+.+.+..|.+.+|+.++..+ ...+|..+ ||
T Consensus       278 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~-Gp  350 (395)
T PRK10054        278 -----TAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAI-NP  350 (395)
T ss_pred             -----HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHH-HH
Confidence                 4455555555544442  334445667788889988888888889999999999999998765 55578887 99


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 014462          340 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       340 ~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~  402 (424)
                      .++|.++|+.+                                +...|++++.+..++.++..
T Consensus       351 ~~~G~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        351 LVSGVILTTLP--------------------------------PWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHHHHcC--------------------------------hhhHHHHHHHHHHHHHHHHH
Confidence            99999999887                                77788887776665555544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.11  E-value=4.6e-08  Score=99.68  Aligned_cols=188  Identities=18%  Similarity=0.183  Sum_probs=130.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcC-CCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLG-YADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g-~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      .++++|+|+++..++..++...+.-.+.+..+.+.++.| ++....  ..++..+.-.+.-...+++..|+|.|+.+   
T Consensus       200 ~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll---  276 (400)
T PF03825_consen  200 ALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLL---  276 (400)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            346899999888777777666665556667778889988 554432  44555566666666777777777766433   


Q ss_pred             HHHHHHHHHHHHHHHHHHhc--hhHHHHHH----HHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHH-HHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAIG--WPGEIYVT----TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSLI  336 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~~--~~~~l~~~----~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~-~~~lgs~l  336 (424)
                         .++.+..++=..+++..  +.+..+..    -.+.|+++|..+.....++.+..|.+.++++.++.+. ...+|+.+
T Consensus       277 ---~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i  353 (400)
T PF03825_consen  277 ---LLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI  353 (400)
T ss_pred             ---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence               55555555544444433  22332222    3468999999999999999999999999999999776 57899997


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          337 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       337 ~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                       |..++|+++|+.+.+..                          --|...+.+.+++.++..++.+++.++
T Consensus       354 -G~~igG~l~~~~g~~~~--------------------------~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  354 -GSLIGGWLYDAFGARGM--------------------------FDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             -HHHHHHHHHHHhcchhh--------------------------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence             99999999999874321                          015566777777766666666555444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.11  E-value=5.3e-09  Score=106.23  Aligned_cols=151  Identities=17%  Similarity=0.133  Sum_probs=114.4

Q ss_pred             HHHhcHHHHHHHcCCCchhH-HHHHHHHHhhhhhhhhhhhhhhh-----hhcccCchhHHHHHHHHHHHHHHHHHHhc--
Q 014462          212 TVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAMAVAQVVMAFALLYYAIG--  283 (424)
Q Consensus       212 ~~~~~l~~i~~~~g~s~~~~-~~sl~si~~~~gr~~~G~lsd~~-----g~k~~~~r~~~l~~~~~~~~~~~ll~~~~--  283 (424)
                      ....-+|.++++.|++.+++ +++..... .+.++++|+++||+     ||||.+     +.++.++++++...++..  
T Consensus        17 ~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~-----l~~~~~~~~l~~~~l~~~~~   90 (402)
T PRK11902         17 LTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGW-----LLLTQVGLAASIAAMAFCPP   90 (402)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhH-----HHHHHHHHHHHHHHHHhcCc
Confidence            34557889999999998877 44444443 58899999999999     665532     345555555554444332  


Q ss_pred             --hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhc
Q 014462          284 --WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-AEKQAGLLWKY  360 (424)
Q Consensus       284 --~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~-~~~~~~~~~~~  360 (424)
                        +.+.+++..++.+++.+...+...+++.|++++|+|++..++...+..+|..+ ++.+.+.+.+.. +          
T Consensus        91 ~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~-g~~l~~~l~~~~~g----------  159 (402)
T PRK11902         91 HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV-SGGLALWLADRVLG----------  159 (402)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH-HhHHHHHHHhcccC----------
Confidence              23445666667788888888899999999999999999999999999999987 888888888753 4          


Q ss_pred             cCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 014462          361 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  401 (424)
Q Consensus       361 ~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~  401 (424)
                                            |+..|++.+.+.++..+..
T Consensus       160 ----------------------w~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        160 ----------------------WGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHH
Confidence                                  9999999998877665543

>PRK10133 L-fucose transporter; Provisional

Probab=99.10  E-value=6.5e-09  Score=107.19  Aligned_cols=145  Identities=15%  Similarity=0.047  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 014462          195 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  272 (424)
Q Consensus       195 ~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~  272 (424)
                      .++.+++.++............+|++.+++|.++.+.  ..+.+.++..++.+..|.+.||+|||+.+      .++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l------~~g~~~  100 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence            4455555555555555555667888888899988765  88899999999999999999999999765      666777


Q ss_pred             HHHHHHHH---H-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          273 MAFALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       273 ~~~~~ll~---~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      ++++.+++   . ..+...+++..++.|++.|..++.....+.+..+.++++...++.+....+|..+ ++.+.+.+.
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~-g~~~g~~l~  177 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            77776554   2 3456678889999999999999999999999876666666789999999999997 888776544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.10  E-value=1.4e-08  Score=116.32  Aligned_cols=153  Identities=15%  Similarity=0.082  Sum_probs=116.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCch-hH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT-SI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~-~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      ++.+++++.+|...+..++.......+..++|.+.++ +|++.. ..  +.+...++.++|.+++|+++||+++++.+  
T Consensus       225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~--  302 (1146)
T PRK08633        225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV--  302 (1146)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch--
Confidence            3447778888887777666666666666778888755 788866 43  77888899999999999999999877644  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                          .++.++++++.+++. ..+.+.+++..++.|++.|...+...+++.+.+|.+.+|+.+++.++...+|+.+ ++.+
T Consensus       303 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~~  377 (1146)
T PRK08633        303 ----PLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLAL  377 (1146)
T ss_pred             ----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHHH
Confidence                344445555544443 3345566677888999999999899999999999999999999999999999876 6665


Q ss_pred             HHHHH
Q 014462          342 ASGIY  346 (424)
Q Consensus       342 ~g~l~  346 (424)
                      .+.+.
T Consensus       378 ~~~l~  382 (1146)
T PRK08633        378 TTLFS  382 (1146)
T ss_pred             HHHHH
Confidence            55443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.09  E-value=2.4e-08  Score=99.64  Aligned_cols=150  Identities=17%  Similarity=0.094  Sum_probs=104.8

Q ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          188 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       188 ~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      ++.++++++|...+...+..........+.|.+.+ ++|+++.+.  +.+...++..+++++.|++.||+++|+..    
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~----  275 (385)
T TIGR00710       200 LLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL----  275 (385)
T ss_pred             HHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----
Confidence            34677888888777666665556666667787776 588887654  67778899999999999999999987644    


Q ss_pred             HHHHHHHHHHHHHHHHHh------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  338 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~~------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~  338 (424)
                        ..+..++.++.+++..      .....++...++.|++.+...+.......|.+| +++|++.++.+.....++.+. 
T Consensus       276 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~-  351 (385)
T TIGR00710       276 --RMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIV-  351 (385)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHH-
Confidence              3333333333333221      112234555677889999888888889899886 678999999888776666653 


Q ss_pred             HHHHHHH
Q 014462          339 GVIASGI  345 (424)
Q Consensus       339 ~~l~g~l  345 (424)
                      +.+.|.+
T Consensus       352 ~~~~~~~  358 (385)
T TIGR00710       352 GYLVSLI  358 (385)
T ss_pred             HHHHHhc
Confidence            4455633

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.08  E-value=7.9e-09  Score=108.26  Aligned_cols=110  Identities=17%  Similarity=0.207  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-ch------hHHHHHHHHHHHHHhhhhH
Q 014462          231 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW------PGEIYVTTVLVGLSYGAHW  303 (424)
Q Consensus       231 ~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~~------~~~l~~~~~l~G~~~G~~~  303 (424)
                      .+.+...++..+|.+.+|+++||+|||+.+      .++.+++.++.++... .+      ...+++..++.|++.|..+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVY------GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence            388889999999999999999999998755      4444444444444332 11      3568889999999999999


Q ss_pred             hHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          304 AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       304 ~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                      +..+.+++|.+|.++||+..++......+|..+ ++.+...+..
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~-g~~~~~~~~~  176 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILA-GAIVALIVLA  176 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999999999986 8877775543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.07  E-value=9.1e-10  Score=112.10  Aligned_cols=172  Identities=21%  Similarity=0.296  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcC----CCchhH--HHHHHHHHhhhhhhhhhhhhhhh-hhcccCchhHHH
Q 014462          195 DFLLLFFSLVLASGSGLTVIDNLGQICQ-SLG----YADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAM  266 (424)
Q Consensus       195 ~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g----~s~~~~--~~sl~si~~~~gr~~~G~lsd~~-g~k~~~~r~~~l  266 (424)
                      .+|+++..-++=-++.+++---+..++. +.+    ++++++  .++.++..-.+..+++||++||+ |+|+.+      
T Consensus        22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI------   95 (498)
T COG3104          22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI------   95 (498)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH------
Confidence            5788888888888888877665555543 344    887665  88888888889999999999998 677665      


Q ss_pred             HHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcch--hhHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~~---~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~--~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                      ..+.+++++++++++..   .+..++++.+++++|+|..=+-...++.|++|+++  |-..+++..++.++|+++ +|.+
T Consensus        96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i  174 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APII  174 (498)
T ss_pred             HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHH
Confidence            78889999999998754   46689999999999999999999999999998764  677888899999999997 9999


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          342 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       342 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      .+++.++.+                                |+..|...+.-..++.+..++.+
T Consensus       175 ~~~~~~~~g--------------------------------~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         175 TGLLAINYG--------------------------------WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHhhC--------------------------------HHHHHHHHHHHHHHHHHHHHHcc
Confidence            999988877                                99999999988888877766654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.06  E-value=4.8e-09  Score=120.17  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=112.9

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcH-HHHHHHcCCCchh----HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNL-GQICQSLGYADTS----IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l-~~i~~~~g~s~~~----~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      ..++++.|+.++++.++.......+...+ +.+..+++.+...    +..+++.++..++.+.+|+++||+|||+.+   
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l---   80 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI---   80 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH---
Confidence            36778888888877777655444333333 3333445554332    267788888999999999999999998754   


Q ss_pred             HHHHHHHHHHHHHHH----HHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALL----YYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       264 ~~l~~~~~~~~~~~l----l~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                         ..+.++.++..+    .....+.+.+++..++.|++.|..++...++++|+++.++++++.++..++..+|..+ |+
T Consensus        81 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l-g~  156 (1146)
T PRK08633         81 ---RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA-GT  156 (1146)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH-HH
Confidence               222222221111    1123456778889999999999999999999999999999999999999999999987 99


Q ss_pred             HHHHHHHhh
Q 014462          340 VIASGIYDY  348 (424)
Q Consensus       340 ~l~g~l~d~  348 (424)
                      .++|.+.+.
T Consensus       157 ~l~~~l~~~  165 (1146)
T PRK08633        157 ALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHh
Confidence            999988875

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.06  E-value=9.7e-09  Score=100.75  Aligned_cols=179  Identities=11%  Similarity=0.018  Sum_probs=133.0

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +-..+++++.-|.+.+.+-+.....+.++.|+|+|+.|+|+|+.++  ++++..+......+....+.+|...+|..   
T Consensus       200 ~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~---  276 (395)
T COG2807         200 SVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL---  276 (395)
T ss_pred             cccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH---
Confidence            3455899999999998888889999999999999999999998765  99999999999999999999985544422   


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCc-chhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~-~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                        .....+++.++..-+...+....+...++.|++.|+.++..-..+..-... +.-+...++....+.+=..+ ||.+.
T Consensus       277 --~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~-GP~l~  353 (395)
T COG2807         277 --VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF-GPWLF  353 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh-hhhhH
Confidence              233334444444444333333333446899999999999888888777643 33456666666555555564 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 014462          343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  401 (424)
Q Consensus       343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~  401 (424)
                      |+++|..|                               +|+..+...+...++..+.-
T Consensus       354 G~lhDa~g-------------------------------sw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         354 GFLHDATG-------------------------------SWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             hHHHHhcC-------------------------------ChHHHHHHHHHHHHHHHHHH
Confidence            99999988                               39999888887666554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.06  E-value=9.4e-09  Score=97.53  Aligned_cols=151  Identities=18%  Similarity=0.082  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  269 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~  269 (424)
                      .+.||++++..++...+.+-++..-|.+.++ +|+|+.++  +.+.....+++-.+..|.++|++|++-.     +...+
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-----wv~~a  337 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-----WVASA  337 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-----hHHHH
Confidence            6789999998888777666666555555655 79997654  7888888888999999999999998743     34555


Q ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          270 QVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  349 (424)
Q Consensus       270 ~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~  349 (424)
                      .+....++..+.+. .+.-|+.+.+.|+.+.......+..++.+.|.++.|++||++.....+|-.+ .|+++|.+.|..
T Consensus       338 ~~~tl~~H~~l~Ft-~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~-i~Iiag~i~d~~  415 (459)
T KOG4686|consen  338 CILTLLGHSGLFFT-FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF-IPIIAGFIADGD  415 (459)
T ss_pred             HHHHHHHhhhHHhh-hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH-HhhhhheeecCC
Confidence            66666777665432 2334678889999999888888999999999999999999999999999997 799999999877


Q ss_pred             h
Q 014462          350 A  350 (424)
Q Consensus       350 ~  350 (424)
                      |
T Consensus       416 g  416 (459)
T KOG4686|consen  416 G  416 (459)
T ss_pred             C
Confidence            6

>PRK10133 L-fucose transporter; Provisional

Probab=99.06  E-value=5.9e-09  Score=107.52  Aligned_cols=155  Identities=12%  Similarity=0.081  Sum_probs=113.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHH-HH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~-~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      .++.++++.+|...+..++..+...+..++.+.++ ++ +|+++...  ..+...++.++||+.+|++.||+++|+..  
T Consensus       251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l--  328 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL--  328 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--
Confidence            45788999999887777777777666667777774 54 78887654  88899999999999999999999987644  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                          ..+.++.++++++.........+...++.|++.|..++...+...+.+|. +-+.+.++..+ ..+|+.+ +|.+.
T Consensus       329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~-~~~i~  401 (438)
T PRK10133        329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGI-VTPVM  401 (438)
T ss_pred             ----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchH-HHHHH
Confidence                33333333333332222222234567889999999999999999999964 56778887765 4467776 68999


Q ss_pred             HHHHhhhh
Q 014462          343 SGIYDYYA  350 (424)
Q Consensus       343 g~l~d~~~  350 (424)
                      |.+.|..+
T Consensus       402 G~l~~~~g  409 (438)
T PRK10133        402 GFVSDAAG  409 (438)
T ss_pred             HHHHHhcc
Confidence            99988765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.06  E-value=6.6e-09  Score=109.26  Aligned_cols=156  Identities=13%  Similarity=0.136  Sum_probs=119.8

Q ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          188 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       188 ~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      +..++++.|..++++.+....+......-++-+..+..-|+...  +.....+..++..+.+|.+.||+.||+.+     
T Consensus         4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril-----   78 (524)
T PF05977_consen    4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL-----   78 (524)
T ss_pred             cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-----
Confidence            44688999999988887776665555555555555554444332  55666778888999999999999998755     


Q ss_pred             HHHHHHHHHHHHHHH---H---hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYY---A---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       266 l~~~~~~~~~~~ll~---~---~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                       ..+.++.++..+.+   .   ..+++.+++..++.|++.....+...+++.|+.|.++...+.++.++..+++..+ ||
T Consensus        79 -i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i-GP  156 (524)
T PF05977_consen   79 -ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII-GP  156 (524)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc-cc
Confidence             44444433322221   1   2356788899999999999999999999999999999999999999999999997 99


Q ss_pred             HHHHHHHhhhh
Q 014462          340 VIASGIYDYYA  350 (424)
Q Consensus       340 ~l~g~l~d~~~  350 (424)
                      .++|.++...|
T Consensus       157 algG~Lva~~G  167 (524)
T PF05977_consen  157 ALGGILVAFFG  167 (524)
T ss_pred             hHHHHHHHHHH
Confidence            99999998877

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.06  E-value=9.1e-09  Score=102.36  Aligned_cols=166  Identities=14%  Similarity=0.057  Sum_probs=115.7

Q ss_pred             HhcHHHHHHHcCCCchhH-HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh----chhHHH
Q 014462          214 IDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI----GWPGEI  288 (424)
Q Consensus       214 ~~~l~~i~~~~g~s~~~~-~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~----~~~~~l  288 (424)
                      ..-+|.+.++.|+|.++. +.+...+...+ ++++|.++||+..|+.-.|+.++..+.++.+++.+.+++    .+.+.+
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l   86 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL   86 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            345788899999998876 44433444444 899999999983221112222334555555555444432    233445


Q ss_pred             HHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcc
Q 014462          289 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  368 (424)
Q Consensus       289 ~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~  368 (424)
                      +...++.+++.+...+...+++.|++++|+|+.+.++...+..+|..+ ++.+++.+++..+..+               
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~g~~~---------------  150 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL-SGSLALVLASPEFANT---------------  150 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc---------------
Confidence            566667788888888889999999999999999999999999999997 8999998887665110               


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          369 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       369 ~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                               ....+||.+|++.+++.+++.+..++..
T Consensus       151 ---------~~~~~wr~~f~i~ai~~l~~~~~~~~~~  178 (356)
T TIGR00901       151 ---------GLITLWGYIFFWTALLILPGLLVTLFLA  178 (356)
T ss_pred             ---------ccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence                     1234599999999987777665555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.05  E-value=8.1e-09  Score=106.07  Aligned_cols=143  Identities=14%  Similarity=0.071  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH---HHHHH-----HHHhhhhhhhhhhhhhhhhhcccCchhHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI---YVSMI-----SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  268 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~---~~sl~-----si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~  268 (424)
                      -.++++.++.......+....|++.++++.++.+.   ..+..     .+...+|.+..|+++||+|||+.+      ..
T Consensus        18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~~   91 (434)
T PRK15075         18 LRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL------IV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH------HH
Confidence            34455555555555566677888889998766432   22222     222346788999999999999755      55


Q ss_pred             HHHHHHHHHHHHHhc-hhH--------HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 014462          269 AQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       269 ~~~~~~~~~ll~~~~-~~~--------~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                      +.++++++.++.... +..        .+++..++.|++.|..++....+++|++|+++||+..++......+|..+ ++
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~-g~  170 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF-AA  170 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH-HH
Confidence            556666665555432 322        35778899999999999888999999999999999999999888888775 77


Q ss_pred             HHHHHHH
Q 014462          340 VIASGIY  346 (424)
Q Consensus       340 ~l~g~l~  346 (424)
                      .+++.+.
T Consensus       171 ~~g~~l~  177 (434)
T PRK15075        171 LLGYLLN  177 (434)
T ss_pred             HHHHHHH
Confidence            6666553

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.04  E-value=1e-08  Score=104.83  Aligned_cols=156  Identities=10%  Similarity=-0.041  Sum_probs=112.6

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCC--Cchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCc
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGY--ADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP  261 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~--s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~  261 (424)
                      +.++.++++.+|...+..|+..+...+..++++.+.++.+.  +...  .+.+.......+||+++|++.||+++|+.+ 
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l-  302 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL-  302 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-
Confidence            45678899999998888888888877777889999877543  3222  256666677889999999999999876533 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          262 RPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       262 r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                           .+..++.++.+++....+........++.|++++..|+...+...+..|++......++.+.  .+|+.+ .|.+
T Consensus       303 -----~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~-~p~l  374 (410)
T TIGR00885       303 -----MAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGI-VPPL  374 (410)
T ss_pred             -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--Hhccch-HHHH
Confidence                 33344444444443333333345677888999999999999999999986654434444333  389987 7999


Q ss_pred             HHHHHhhhh
Q 014462          342 ASGIYDYYA  350 (424)
Q Consensus       342 ~g~l~d~~~  350 (424)
                      .|.+.|..+
T Consensus       375 ~G~~~d~~~  383 (410)
T TIGR00885       375 QGFIIDMKE  383 (410)
T ss_pred             HHHHHHHhc
Confidence            999999764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.02  E-value=1.4e-09  Score=117.22  Aligned_cols=128  Identities=14%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             hcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc---------
Q 014462          215 DNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG---------  283 (424)
Q Consensus       215 ~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~---------  283 (424)
                      ..++++.++++++..+.  +++.+.+++.++.+..|++.||++||+.+      .++.++++++.++++..         
T Consensus        54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhcCCccc
Confidence            35677878899887655  88999999999999999999999998876      55566666666554321         


Q ss_pred             -------------------------------------------hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhh
Q 014462          284 -------------------------------------------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFG  320 (424)
Q Consensus       284 -------------------------------------------~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g  320 (424)
                                                                 ....++++.++.|+|.+..+++..+++.|.+++++++
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                       1234668999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          321 ALYNFLTLASPAGSLIFSGVIASGIYDYY  349 (424)
Q Consensus       321 ~~~g~~~~~~~lgs~l~~~~l~g~l~d~~  349 (424)
                      ...++.+.+..+|..+ |+.++|.+.+.+
T Consensus       208 ~~~~i~~~~~~iG~~l-G~llgg~l~~~~  235 (633)
T TIGR00805       208 LYIGILESIAVFGPAF-GYLLGSFCLQIY  235 (633)
T ss_pred             HHHHHHHHHHHhhhHH-HHHHHHHHHhcc
Confidence            9999999999999997 999999887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.02  E-value=9.1e-09  Score=103.82  Aligned_cols=147  Identities=16%  Similarity=0.147  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      |.+...+++...+...+...+|.+.+++|.+..++  .++...+...++.+++|.++||++|+... +++. .++..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~-~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIA-LRLL-ALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHH-HHHHHHHH
Confidence            44445555555444455667899999999998765  78888999999999999999999874321 1111 11222222


Q ss_pred             HHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          275 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       275 ~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +  .+.. ..+.+.+++..++.|.+.+...+...+++.+ + .+++++++|.......+|..+ +|.+.|.+.+..+
T Consensus        85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~-~~~~~~~~g~~~~~~slG~~~-g~~l~g~l~~~~g  156 (382)
T TIGR00902        85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT-W-QKQFGLDYGKVRLIGSAAFII-GSALFGGLIGMFD  156 (382)
T ss_pred             H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH-H-HHHcCCCccHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            2  1222 3456677777878888887777777777655 3 577899999999999999997 9999999999877

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00898 2A0119 cation transport protein

Probab=99.02  E-value=1.8e-09  Score=112.82  Aligned_cols=146  Identities=16%  Similarity=0.132  Sum_probs=115.1

Q ss_pred             cHHHHHHHcCCC---chh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHH
Q 014462          216 NLGQICQSLGYA---DTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIY  289 (424)
Q Consensus       216 ~l~~i~~~~g~s---~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~  289 (424)
                      ..+.+.++++.+   ...  ...++..++..+|.++.|+++||+|||+.+      .++.++.+++.++.+ ..+.+.++
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~------~~~~~~~~i~~~~~~~~~~~~~~~  184 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL------LLSTLVTAVSGVLTAFSPNYTVFL  184 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH------HHHHHHHHHHHHHHHHcccHHHHH
Confidence            345666777876   433  388899999999999999999999998654      455555555555544 34567788


Q ss_pred             HHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 014462          290 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  369 (424)
Q Consensus       290 ~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      +..++.|++.|...+...++++|++|.++|+...++...+..+|.++ ++.+++.+.   .                   
T Consensus       185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~---~-------------------  241 (505)
T TIGR00898       185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-LPLVAYFIP---D-------------------  241 (505)
T ss_pred             HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH-HHHHHHHhh---H-------------------
Confidence            89999999999999999999999999999999999998888888876 677655432   1                   


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          370 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       370 ~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                                   ||+.|++.+..+++..+..++
T Consensus       242 -------------wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       242 -------------WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHh
Confidence                         899999998887777666543

>PRK09848 glucuronide transporter; Provisional

Probab=99.01  E-value=1.2e-08  Score=105.21  Aligned_cols=157  Identities=11%  Similarity=0.064  Sum_probs=114.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH-H-HHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-Y-VSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~-~-~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      ++++++++.|+.+.+..++............+++.++ +|.++... + .....+...++.++.+++.||+++|+.+   
T Consensus       221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~---  297 (448)
T PRK09848        221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF---  297 (448)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---
Confidence            5568899999988887777766666655566666665 67655433 3 2333566788999999999999987654   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCc-------chhhHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-------KSFGALYNFLTLASPAG  333 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~-------~~~g~~~g~~~~~~~lg  333 (424)
                         .++.++.+++.+++..   .+.+.+++..++.|+|.+...+...+..++..+.       ++.|..+++.++...+|
T Consensus       298 ---~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg  374 (448)
T PRK09848        298 ---LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG  374 (448)
T ss_pred             ---HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence               5555555555554433   2344556667788999999998888888887643       45699999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 014462          334 SLIFSGVIASGIYDYYA  350 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~  350 (424)
                      +.+ ++.+.|.+.+..|
T Consensus       375 ~ai-g~~i~g~~l~~~G  390 (448)
T PRK09848        375 QAI-GGSIPAFILGLSG  390 (448)
T ss_pred             HHH-HHHHHHHHHHHcC
Confidence            997 9999998887655

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.98  E-value=1.1e-08  Score=102.17  Aligned_cols=183  Identities=18%  Similarity=0.227  Sum_probs=138.2

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCc
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  261 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~  261 (424)
                      +++++..+.++.....++.++..=...+.+.....+.. ++|++..+.  +....++..++|.++.|++.||++.|+.+ 
T Consensus       243 ~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl-  321 (438)
T COG2270         243 STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL-  321 (438)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-
Confidence            34666666666666666665544333344444455565 689998876  66778899999999999999999998665 


Q ss_pred             hhHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          262 RPVAMAVAQVVMAFALLY-YAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       262 r~~~l~~~~~~~~~~~ll-~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                           .+++++..+..+. +.......+++...++|++.|..++..-++..++.|+++-+..+|+.++....++.+ ||.
T Consensus       322 -----~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~-gp~  395 (438)
T COG2270         322 -----MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL-GPF  395 (438)
T ss_pred             -----hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH-HHH
Confidence                 4444444443333 333445567888899999999999999999999999999999999999999999997 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          341 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       341 l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      +.+.+.|.+++                               .|..+..+..+.+++.++.+.+.
T Consensus       396 lv~v~t~iTg~-------------------------------~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         396 LVAVITQITGS-------------------------------SRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             HHHHHHHHhcc-------------------------------hhhHHHHHHHHHHhhHhhEEeec
Confidence            99999998873                               57777777777777766654443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.98  E-value=3.5e-09  Score=103.76  Aligned_cols=137  Identities=16%  Similarity=0.122  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHH
Q 014462          233 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  311 (424)
Q Consensus       233 ~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~s  311 (424)
                      +-+.++..+-|.++.+++.||+|||+.+      +...++.++..+++. ..+.....+..+..-++..+.+.+.+.++.
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTM------al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtP  460 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTM------ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTP  460 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHH------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecC
Confidence            4456778899999999999999999866      555555555444433 233333333444444566666778899999


Q ss_pred             HhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHH
Q 014462          312 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA  391 (424)
Q Consensus       312 e~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a  391 (424)
                      |+||++.|+++.|..+.+..+|+++ .|.++ ..... .                                -..+..+.+
T Consensus       461 EVyPTavRatgvGtcSsmaRIggI~-~p~iA-~~~e~-s--------------------------------~sl~i~vy~  505 (528)
T KOG0253|consen  461 EVYPTAVRATGVGTCSSMARIGGIF-SPVIA-MRAEL-S--------------------------------TSLPIFVYG  505 (528)
T ss_pred             cccchhhhhcchhhhhhHHhhhhhh-hhHHH-HHhcc-c--------------------------------eeehHHHHH
Confidence            9999999999999999999999997 89888 22111 1                                345666777


Q ss_pred             HHHHHHHHHHHHHhhhhhH
Q 014462          392 GLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       392 ~~~~~~~~l~~~l~~~~~~  410 (424)
                      ++++++.++++++..++|.
T Consensus       506 ~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  506 ALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             HHHHHHHHHheeeeeccCC
Confidence            8888888888888777764

>PRK11043 putative transporter; Provisional

Probab=98.97  E-value=3.5e-08  Score=99.87  Aligned_cols=159  Identities=15%  Similarity=0.111  Sum_probs=110.7

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      ++++.++++++|...+...+.......+..+.|.+.++.|++....  ......++..+|+...+++.||+++|+..   
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~---  271 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL---  271 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---
Confidence            4677889999987766665555555666778888888889987654  45566778888999999999999887643   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                      ....+...+..+..+++..   .....+.+...+.|++.|..++...+...+.+| +++|.+.++.++....++.+ ++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~-~~~  349 (401)
T PRK11043        272 PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFL-ASL  349 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHH-HHH
Confidence            1112222222222222221   223344556677888888888888888778885 67899999999988777776 788


Q ss_pred             HHHHHHhhh
Q 014462          341 IASGIYDYY  349 (424)
Q Consensus       341 l~g~l~d~~  349 (424)
                      +.|.+.|..
T Consensus       350 ~~g~l~~~~  358 (401)
T PRK11043        350 LVSALISTP  358 (401)
T ss_pred             HHHHccCCC
Confidence            889887743

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.97  E-value=9.6e-09  Score=100.88  Aligned_cols=146  Identities=16%  Similarity=0.227  Sum_probs=108.6

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHcCCC-chhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYA-DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s-~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +++..+++.+|.+....++..........++|.+ .+.+|++ ..+.  +.++..+.+.++++..|+++||+++|+..  
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--  276 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL--  276 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH--
Confidence            4457777777866666666555566677788887 4668888 4444  68888999999999999999999876533  


Q ss_pred             hHHHHHHHHHHHHHHHHHH---h-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA---I-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  338 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~---~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~  338 (424)
                          .+....+.+..+.+.   . .+....+...++.|++.|..++.....+.+.+|++++|+.+|+.++...+|+.+ +
T Consensus       277 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-g  351 (352)
T PF07690_consen  277 ----LIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-G  351 (352)
T ss_dssp             ----HHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-H
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-C
Confidence                222222222222222   2 234566668888999999999999999999999999999999999999999987 7


Q ss_pred             H
Q 014462          339 G  339 (424)
Q Consensus       339 ~  339 (424)
                      |
T Consensus       352 P  352 (352)
T PF07690_consen  352 P  352 (352)
T ss_dssp             H
T ss_pred             C
Confidence            6

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.97  E-value=1.4e-08  Score=102.39  Aligned_cols=132  Identities=14%  Similarity=0.157  Sum_probs=97.7

Q ss_pred             HHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHH
Q 014462          212 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  288 (424)
Q Consensus       212 ~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l  288 (424)
                      .+...+|.+.+++|.|..+.  .+++..+...++.+.+|.++||++|+....|..  .+...+..+  .... ..+.+.+
T Consensus        22 ~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~l   97 (382)
T PRK11128         22 VFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLL--ALLTLLFAV--AFWFGAHSFWLL   97 (382)
T ss_pred             HHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHH--HHHHHHHHH--HHHHhcccHHHH
Confidence            34556788999999987765  888999999999999999999999853221211  111211111  1222 3456667


Q ss_pred             HHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          289 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       289 ~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      ++..++.|++.+..++...+++.+.  .++++..++.......+|..+ +|.++|.++++.+
T Consensus        98 ~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~i-gp~lgg~l~~~~g  156 (382)
T PRK11128         98 FVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVI-GSALTGKLVSWFG  156 (382)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            7788888998888888777776665  466788888889999999997 9999999999887

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.96  E-value=6e-10  Score=112.16  Aligned_cols=170  Identities=15%  Similarity=0.177  Sum_probs=131.1

Q ss_pred             HHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHH
Q 014462          202 SLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY  279 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll  279 (424)
                      +.......-+++-..++.+.+.++.+++..  +.+...+...+..|+.|++.||+.||+.+      .++..+-.++.+.
T Consensus        41 vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW~~Av~~  114 (493)
T KOG1330|consen   41 VNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIWTLAVFA  114 (493)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHHHHHHHH
Confidence            333333344444445666666778877654  78888899999999999999999999876      5666655555554


Q ss_pred             HHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 014462          280 YAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW  358 (424)
Q Consensus       280 ~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~  358 (424)
                      ..+ ...+.+.+...+.|+|.....++.++++++.|+..+|++.+++.+++.++|+.+ |-+..+.+.+.++        
T Consensus       115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl-G~vvgs~va~~~~--------  185 (493)
T KOG1330|consen  115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL-GYVVGSVVASLTF--------  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce-eEEeeeeeccCcc--------
Confidence            443 345778889999999999999999999999999999999999999999999986 6554446555544        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014462          359 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  409 (424)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~  409 (424)
                                             -||+.|++.+++.++..++..++..+.+
T Consensus       186 -----------------------~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  186 -----------------------WWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             -----------------------ceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence                                   1999999999999998888777665444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.95  E-value=6.2e-08  Score=96.34  Aligned_cols=136  Identities=17%  Similarity=0.137  Sum_probs=97.3

Q ss_pred             hhhhHH---HHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHH-HHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          190 ALMKAD---FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       190 ~l~~~~---fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~s-i~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      .++++.   +|.+.+..++..........++|.+.+++|++..+.  +.+..+ +...+|.+++|++.||+++|+..   
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l---  278 (356)
T TIGR00901       202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL---  278 (356)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH---
Confidence            455543   676666666665666667778899988899987764  344444 67789999999999999987654   


Q ss_pred             HHHHHHHHHHHHHHHHHHh------------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYAI------------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASP  331 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~~------------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~  331 (424)
                         ..+.++.+++..++..            .+.+.+....++.+++.|..++...++.+|.+|++++|+.+++.+....
T Consensus       279 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       279 ---LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence               3333333333332221            2234456667777999999999999999999999999999999877654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.95  E-value=1.5e-07  Score=96.44  Aligned_cols=159  Identities=18%  Similarity=0.252  Sum_probs=124.9

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCch-hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~-~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      ..+++.++++.++.++...++............+.+.++ .|.+.. +.+..+..+.+.++.+++++++||+|+|+.+  
T Consensus       216 ~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~--  293 (428)
T PF13347_consen  216 DSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY--  293 (428)
T ss_pred             cchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh--
Confidence            346678899999988888887766555555556666666 566543 3377788899999999999999999999876  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-h--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhC-------cchhhHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYA-I--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPA  332 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~-~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg-------~~~~g~~~g~~~~~~~l  332 (424)
                          ..+.++.+++.+++. .  .+.+.+++..++.|++.|..+...+++.+|..+       .++-|..+++.+....+
T Consensus       294 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~  369 (428)
T PF13347_consen  294 ----IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI  369 (428)
T ss_pred             ----hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence                555566655555543 2  467788899999999999999999999998875       45679999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 014462          333 GSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       333 gs~l~~~~l~g~l~d~~~  350 (424)
                      |..+ ++.+.|.+.+..|
T Consensus       370 ~~~l-a~~i~g~~l~~~G  386 (428)
T PF13347_consen  370 GQGL-AGAIVGLLLALVG  386 (428)
T ss_pred             HHHH-HHHHHHHHHHHhC
Confidence            9998 8999998887765

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=3.3e-09  Score=104.93  Aligned_cols=141  Identities=16%  Similarity=0.171  Sum_probs=126.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHhhhhHhHHHHH
Q 014462          231 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAA  309 (424)
Q Consensus       231 ~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~~~~  309 (424)
                      ++....++.+.+..+..|.+.||+|+|-.+      .++..+|..+-+++++. +.+.+.++..+.|+|..+.++.-.++
T Consensus       110 ~LFaskA~~qllvnp~~G~l~~~iGy~ipm------~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam  183 (464)
T KOG3764|consen  110 LLFASKALVQLLVNPFFGNLIDRIGYKIPM------VAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM  183 (464)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHhccccHH------HHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence            388888999999999999999999998544      78889998888888865 46688999999999999999999999


Q ss_pred             HHHhhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHH
Q 014462          310 ASELFGLKS-FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCG  388 (424)
Q Consensus       310 ~se~fg~~~-~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~  388 (424)
                      +++.||.++ ||.+.|+...+.++|-.+ ||+.+|.+||..|                                ++..|+
T Consensus       184 lAd~f~~d~er~~vmGialgfislG~lv-gPpfGGilYe~~G--------------------------------k~aPFl  230 (464)
T KOG3764|consen  184 LADVFPEDNERGSVMGIALGFISLGVLV-GPPFGGILYEFAG--------------------------------KSAPFL  230 (464)
T ss_pred             HHHHcccchhhhHHHHHHHHHHhcccee-cCCcccchHhhcC--------------------------------CcCcHH
Confidence            999998776 699999999999999998 9999999999887                                889999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH
Q 014462          389 IMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       389 i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      ++++++++...+-+++...++.
T Consensus       231 VL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  231 VLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             HHHHHHHHHHHHHHheeCcccc
Confidence            9999999998888887766544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.90  E-value=4.7e-07  Score=91.33  Aligned_cols=148  Identities=11%  Similarity=0.067  Sum_probs=86.6

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++++|......++.......+....|.+.+ ++|++....  ..+..++.+.++++..|++.||+++|+..      
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~------  272 (392)
T PRK10473        199 SLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM------  272 (392)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH------
Confidence            567777776655555554444455555666664 478887644  67788899999999999999999987644      


Q ss_pred             HHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF-GALYNFLTLASPAGSLIFSGVIASG  344 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~-g~~~g~~~~~~~lgs~l~~~~l~g~  344 (424)
                      .++..+..++.+++.. ......+....+.+++.+..++.  ....++.|.+++ |.+.++.    .++..+ ++.+++.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~----~~~~~~-g~~~~~~  345 (392)
T PRK10473        273 LTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASSTL----GIAQVC-GSSLWIW  345 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHHH----HHHHHH-HHHHHHH
Confidence            4444444444444332 22233344444545554444333  233445554333 4444444    444444 5666666


Q ss_pred             HHhhhh
Q 014462          345 IYDYYA  350 (424)
Q Consensus       345 l~d~~~  350 (424)
                      +.++.+
T Consensus       346 l~~~~g  351 (392)
T PRK10473        346 LAAVLG  351 (392)
T ss_pred             HHHHhc
Confidence            666655

>PRK09669 putative symporter YagG; Provisional

Probab=98.90  E-value=7.7e-08  Score=99.11  Aligned_cols=156  Identities=14%  Similarity=0.109  Sum_probs=105.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHH-HH-cCCCchhH-HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QS-LGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~-~~-~g~s~~~~-~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +++.++++.+|.+....++...... ....+..++ +. .+.++... +.....+...++.+++++++||+|+|+.+   
T Consensus       222 ~~~~~~n~~~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~---  297 (444)
T PRK09669        222 LKLLLGNSQWRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF---  297 (444)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH---
Confidence            5567889999988776665433332 222233333 32 22222222 44455677788999999999999987654   


Q ss_pred             HHHHHHHHHHHH-HHHHHH--hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhh-------CcchhhHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAF-ALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAG  333 (424)
Q Consensus       264 ~~l~~~~~~~~~-~~ll~~--~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~f-------g~~~~g~~~g~~~~~~~lg  333 (424)
                         .++.++.++ +..++.  ..+.+.+++..++.|++.+...+..+++++|..       |.+.-|..+++.+....+|
T Consensus       298 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg  374 (444)
T PRK09669        298 ---KWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG  374 (444)
T ss_pred             ---HHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence               223332222 221222  234455677778899999999999999999887       5566788999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 014462          334 SLIFSGVIASGIYDYYA  350 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~  350 (424)
                      ..+ |+.+.|.++|..|
T Consensus       375 ~al-g~~i~g~ll~~~G  390 (444)
T PRK09669        375 LAI-GGAVVGWILAWVD  390 (444)
T ss_pred             HHH-HHHHHHHHHHHcC
Confidence            997 9999999998876

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.89  E-value=4.4e-07  Score=90.71  Aligned_cols=146  Identities=9%  Similarity=0.035  Sum_probs=90.1

Q ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          188 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       188 ~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      ++.++++++|...+..++.......+..+.|.+..+ .|++..+.  +.+...+...++++..|++.||+++|+..    
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~----  263 (377)
T PRK11102        188 ASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML----  263 (377)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH----
Confidence            346777777776666655555555566667776654 78887654  77888899999999999999999988644    


Q ss_pred             HHHHHHHH---HHHHHHHHH-hc-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHH-HHHHHHHH
Q 014462          265 AMAVAQVV---MAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAGSLIFS  338 (424)
Q Consensus       265 ~l~~~~~~---~~~~~ll~~-~~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~-~lgs~l~~  338 (424)
                        ..+..+   +.+..+... .. ..+.+.+...+.+.+.+...+.....+.|..| +++|...++.+... .+|+.+ +
T Consensus       264 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~-g  339 (377)
T PRK11102        264 --RFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIV-G  339 (377)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH-H
Confidence              222222   222222111 11 22333334444444455555555667778776 78899988876643 344443 5


Q ss_pred             HHH
Q 014462          339 GVI  341 (424)
Q Consensus       339 ~~l  341 (424)
                      +.+
T Consensus       340 ~~~  342 (377)
T PRK11102        340 ALL  342 (377)
T ss_pred             HHH
Confidence            544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.88  E-value=6.2e-08  Score=100.83  Aligned_cols=155  Identities=10%  Similarity=0.056  Sum_probs=105.4

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      ..++++.++.+....++............+.+.+....+...  .+.+..++...++.+++++++||+|+|+.+      
T Consensus       226 ~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~------  299 (473)
T PRK10429        226 LIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW------  299 (473)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------
Confidence            356788888777766666544333333333333433223222  255566688889999999999999988654      


Q ss_pred             HHHHHHHHHHHHHHH------hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHh-------hCcchhhHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL-------FGLKSFGALYNFLTLASPAG  333 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~------~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~-------fg~~~~g~~~g~~~~~~~lg  333 (424)
                      .++.++.+++.+.+.      ..+.+.+++..++.|++.+..++..+++++|.       .|.+.-|..+++.....-+|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~  379 (473)
T PRK10429        300 AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGG  379 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHH
Confidence            333333332222211      12234556677888999999999999999988       45667788999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 014462          334 SLIFSGVIASGIYDYYA  350 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~  350 (424)
                      +.+ ++.+.|.+.|..|
T Consensus       380 ~al-~~~i~g~~l~~~G  395 (473)
T PRK10429        380 SAF-AAFFIGVVLGLIG  395 (473)
T ss_pred             HHH-HHHHHHHHHHHcC
Confidence            997 9999999988765

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.87  E-value=1.2e-07  Score=98.47  Aligned_cols=171  Identities=14%  Similarity=0.100  Sum_probs=116.2

Q ss_pred             HHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhh----hhhcccCchhHHHHHHHHHHHHHHHHHHhc-hh
Q 014462          213 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA----IVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WP  285 (424)
Q Consensus       213 ~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~----~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-~~  285 (424)
                      ...+++++.+++|.+....  +.....+...+..++.|+++||    +||||.+     +..+.+.++++.+++... +.
T Consensus        23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~-----il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF-----IAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH-----HHHHHHHHHHHHHHHHhCchh
Confidence            4456778889999987654  7778889999999999999995    8887654     233344444454444321 11


Q ss_pred             -----------------HHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 014462          286 -----------------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF--GALYNFLTLASPAGSLIFSGVIASGI-  345 (424)
Q Consensus       286 -----------------~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~--g~~~g~~~~~~~lgs~l~~~~l~g~l-  345 (424)
                                       ....++..+..++.....++..++++|.+|.+++  +.++++.+....+|+.+ ++.+.|.. 
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il-g~~~g~~~~  176 (477)
T TIGR01301        98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL-GYAAGAYSG  176 (477)
T ss_pred             hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence                             1223334455668888888999999999998864  68999999999999997 77777653 


Q ss_pred             -HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          346 -YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  408 (424)
Q Consensus       346 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~  408 (424)
                       ++..+-.                  . .+..+.-...++.+|++.+++.+++.++.++..+++
T Consensus       177 ~~~~~~~~------------------~-~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       177 LYKIFPFT------------------K-TEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHhcccc------------------c-ccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence             3222200                  0 000111122489999999988888888777766554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.87  E-value=1.5e-08  Score=106.22  Aligned_cols=170  Identities=14%  Similarity=0.145  Sum_probs=134.5

Q ss_pred             HHHHHHHHHhhhhHHHHHhcH----HHHHHHcCCCch--hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNL----GQICQSLGYADT--SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  270 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l----~~i~~~~g~s~~--~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~  270 (424)
                      |.+.++.|...+...++.+-.    +.+.++++.+..  +++.++......+..++.+.+.||+|.|...      .++.
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~------i~G~  118 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVM------IAGG  118 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHH------HHHH
Confidence            666666666666555555443    445566776655  4488888888889999999999999988655      6777


Q ss_pred             HHHHHHHHHHHh-chhHHH-HHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          271 VVMAFALLYYAI-GWPGEI-YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       271 ~~~~~~~ll~~~-~~~~~l-~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      ++.++++++-++ .+.+.+ ....++.|+|.|..+.+...++..+| .|+|+.+.|+...+.++|.++| |.+..++.++
T Consensus       119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~  196 (509)
T KOG2504|consen  119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF-PPLLKYLLSK  196 (509)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH-HHHHHHHHHH
Confidence            888888777554 345544 45688889999999999999999999 7889999999999999999997 7888999999


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      .|                                ||.++++.+++++-.++....++.
T Consensus       197 ~G--------------------------------~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  197 YG--------------------------------WRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hC--------------------------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88                                999999999998776666665543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.85  E-value=2e-07  Score=94.65  Aligned_cols=153  Identities=12%  Similarity=-0.033  Sum_probs=100.0

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      ..++++.++......++...........++.+.++ +|+++.+.  +.+..+++..+|.+..+++.||.++++.+     
T Consensus       200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~-----  274 (393)
T PRK11195        200 VLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL-----  274 (393)
T ss_pred             HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH-----
Confidence            35666665544443333333333444455566654 78887654  77888889999999999998887765433     


Q ss_pred             HHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcch-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS-FGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~-~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                       ..+. ++++..+.+.. .+.+...+..++.|++.|...++..+.+.+.-+.+. +|...++.++...+|..+ +..+.+
T Consensus       275 -~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~-~~~~~~  351 (393)
T PRK11195        275 -PAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLL-MLGLYS  351 (393)
T ss_pred             -HHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHH-HHHHHH
Confidence             2332 22333323332 233445566778899988888888888887654433 699999999999999997 788887


Q ss_pred             HHHhhhh
Q 014462          344 GIYDYYA  350 (424)
Q Consensus       344 ~l~d~~~  350 (424)
                      .+ +..+
T Consensus       352 ~~-~~~~  357 (393)
T PRK11195        352 LL-VKLG  357 (393)
T ss_pred             HH-HHcC
Confidence            54 5555

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.84  E-value=2.3e-07  Score=93.68  Aligned_cols=169  Identities=14%  Similarity=0.054  Sum_probs=111.4

Q ss_pred             HHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH-H---HHHHHHHhhhhhhhh-hhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          199 LFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-Y---VSMISIWNFLGRVGG-GYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       199 l~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~---~sl~si~~~~gr~~~-G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      ++..++............+|.+++++|++..++ +   .++..+..++..++. ++.+||+||||.+     +...+++.
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~-----i~~~~~~~   80 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSW-----VLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhH-----HHHHHHHH
Confidence            333444333333445567899999999998876 3   355577777777776 5578888877653     12222222


Q ss_pred             HHHHHHHH---h--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          274 AFALLYYA---I--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       274 ~~~~ll~~---~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      +.....++   .  ....++.....+.+++...+....-.+..|..+.++++...+....+..+|..+ ++.+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~-g~~~~~~l~~~  159 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFG-GGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            21111121   1  112233334444556666666777778889998888888888888888888887 88888899988


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      .+                                |+.+|++.+++.++..+..+++.
T Consensus       160 ~g--------------------------------w~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       160 FG--------------------------------QRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             hC--------------------------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence            77                                99999999998887776665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.83  E-value=2.6e-08  Score=98.91  Aligned_cols=141  Identities=16%  Similarity=0.144  Sum_probs=101.4

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +.++.++++++|.+.+..++..+....+..++|++.++ +|+++.+.  +.++..+.+.++++.+|+++||+++|+..  
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~--  294 (366)
T TIGR00886       217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL--  294 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH--
Confidence            45678889999998888887777777778888998876 68887544  77788899999999999999999987644  


Q ss_pred             hHHHHHHHHHHHHHHHHH--Hhc---hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYY--AIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG  333 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~--~~~---~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lg  333 (424)
                          ..+..+.+.+..++  ...   +....++...+.+++.|...+...+.++++++ +++|+.+|+.+....+|
T Consensus       295 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       295 ----LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             ----HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence                22222333332222  222   33334445555566666666777788888885 78999999988877765

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.83  E-value=1.4e-07  Score=93.92  Aligned_cols=132  Identities=18%  Similarity=0.225  Sum_probs=96.5

Q ss_pred             HHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-hh--------HHHHHHHHHHHHHhhhhHhHHHH
Q 014462          238 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WP--------GEIYVTTVLVGLSYGAHWAIVPA  308 (424)
Q Consensus       238 i~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-~~--------~~l~~~~~l~G~~~G~~~~~~~~  308 (424)
                      +...++.+..|+++||+|||+.+      .++.++++++.+++... +.        ..+++..++.|++.|..++..+.
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  119 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTL------VITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL  119 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHH------HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence            44457899999999999998755      55666666666555432 22        23677789999999999999999


Q ss_pred             HHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHH
Q 014462          309 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCG  388 (424)
Q Consensus       309 ~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~  388 (424)
                      +++|.++.++|+...++...+..+|..+ ++.+.+.+.+..+...                        .....|+..|+
T Consensus       120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~~~~~~~~~~------------------------~~~~~w~~~~~  174 (394)
T TIGR00883       120 YLAEYAPPGKRGFYGSFQQVGAPVGLLL-AALTVLLLSYLLGDDA------------------------LLEWGWRIPFL  174 (394)
T ss_pred             HhhhcCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHH------------------------hhccchHHHHH
Confidence            9999999999999999999999999987 7877776544222100                        00013999999


Q ss_pred             HHHHHHHHHHHH
Q 014462          389 IMAGLCIIAMVM  400 (424)
Q Consensus       389 i~a~~~~~~~~l  400 (424)
                      +.+.+++++..+
T Consensus       175 ~~~~~~~~~~~~  186 (394)
T TIGR00883       175 VSAVLVLIGLYL  186 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            887766665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.4e-07  Score=93.90  Aligned_cols=156  Identities=17%  Similarity=0.175  Sum_probs=117.2

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +..++++++.++...++.||..|.....-+++++++.+ .|.++.++  +++.+.++-++||..+.++..|+-..|.+  
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~L--  305 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYL--  305 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH--
Confidence            58889999999999999999999999999999999988 78777654  99999999999998888888888654433  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                         ...+.+...+........+... ....++.|+.++..|+...+...+..| ++-. ..+.......+|+.+ -|.+.
T Consensus       306 ---af~a~~~ill~~~~~l~~g~v~-~~~l~~ig~F~simfPTIfslal~~l~-~~ts-~~s~~l~maivGGAi-iP~l~  378 (422)
T COG0738         306 ---AFYALIAILLLLAVALIGGVVA-LYALFLIGLFNSIMFPTIFSLALKNLG-EHTS-VGSGLLVMAIVGGAI-IPPLQ  378 (422)
T ss_pred             ---HHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHhHHHHHHHHHHHHhccC-cccc-ccceeeeeheecchH-HHHHH
Confidence               2222222222211122334333 446778899999999999999999998 5444 444444555677777 59999


Q ss_pred             HHHHhhhh
Q 014462          343 SGIYDYYA  350 (424)
Q Consensus       343 g~l~d~~~  350 (424)
                      |++.|+.+
T Consensus       379 G~i~d~~g  386 (422)
T COG0738         379 GVIADMFG  386 (422)
T ss_pred             HHHHHhhh
Confidence            99999988

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.81  E-value=4.1e-07  Score=95.79  Aligned_cols=179  Identities=12%  Similarity=0.074  Sum_probs=127.1

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      ..+++....+....++.......+...+|.+.++ +|.++...  +.+..++|..+|.++.+++.+++.+++.+      
T Consensus       214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv------  287 (524)
T PF05977_consen  214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV------  287 (524)
T ss_pred             HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh------
Confidence            3345555544433333333333344557888765 77776543  88888999999999888887777655433      


Q ss_pred             HHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      ..+.++.+++.+.++. .+.+...+..++.|++.....+...+.+.+..|.+.+|+..++..+....+..+ |..+.|.+
T Consensus       288 ~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l-Gsll~G~l  366 (524)
T PF05977_consen  288 LLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL-GSLLWGFL  366 (524)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            4555666666666654 345566778888899999988899999999999999999999999888877776 89999999


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          346 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                      .|..+                                .+.++.+.++..+++.++......+
T Consensus       367 a~~~g--------------------------------~~~al~~a~~~lll~~~~~~~~~l~  396 (524)
T PF05977_consen  367 ADHFG--------------------------------VRTALLIAGAALLLSALIALRFPLR  396 (524)
T ss_pred             HHHhC--------------------------------HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99887                                6777877776666666555544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.81  E-value=5.9e-08  Score=97.01  Aligned_cols=173  Identities=16%  Similarity=0.139  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 014462          195 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  272 (424)
Q Consensus       195 ~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~  272 (424)
                      .+|+-++++..+...........+++-+++|+|+.+.  ++++..+...+.|+.-|++.||+|.|+..      .+.+++
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~------~~s~~l   88 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT------ILSMLL   88 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH------HHHHHH
Confidence            3455444444443333333334455567799998876  88899999999999999999999988765      566666


Q ss_pred             HHHHHHHHHh----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          273 MAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       273 ~~~~~ll~~~----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      +.+.++.++.    .+.+.+++..++.|++ |+.+++....++..||+++.|.+.|+.. +.++|..+ ...++-.+...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av-~q~~~P~v~~~  165 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV-AQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHH-HHHHHHHHHHH
Confidence            6666665542    2234777788888887 5677788899999999999999999988 77888776 55555555544


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          349 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      .+..                             -|+.+..+.....++++++.++..
T Consensus       166 ~g~~-----------------------------~w~~~~~i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         166 FGFL-----------------------------AWRNVAGIYVVALAIAAVLAWLGM  193 (417)
T ss_pred             HhhH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4410                             188888888888887777766554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.80  E-value=2.3e-07  Score=96.72  Aligned_cols=131  Identities=11%  Similarity=0.020  Sum_probs=91.9

Q ss_pred             CCCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhh---h
Q 014462          183 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIV---R  256 (424)
Q Consensus       183 ~~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g---~  256 (424)
                      +..+++++++++..|.+.+..+|......++.+++|.+.++ .|++..++  +.+...+++++|.+++|+++||+.   +
T Consensus       262 ~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~  341 (495)
T KOG2533|consen  262 KWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFA  341 (495)
T ss_pred             CHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHH
Confidence            34568889999999999999999999999999999999988 56887655  888999999999999999999963   2


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcc
Q 014462          257 KFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK  317 (424)
Q Consensus       257 k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~  317 (424)
                      ++.    .+.....+...++...+. .......+.+......+.+...+....-+++.....
T Consensus       342 ~~~----~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~  399 (495)
T KOG2533|consen  342 RRL----LFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGN  399 (495)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccch
Confidence            221    233344455555544433 322344444444444555555555556666665433

>PRK11462 putative transporter; Provisional

Probab=98.79  E-value=4.3e-06  Score=86.87  Aligned_cols=158  Identities=9%  Similarity=0.078  Sum_probs=96.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCch-hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~-~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      ++..++++.++.+....++.............++.+. .|.+.. ..+.....+.+.+|.+++++++||+++|+..    
T Consensus       221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~----  296 (460)
T PRK11462        221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF----  296 (460)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----
Confidence            3446778877766655544443333333333344444 343332 2366677888999999999999999987543    


Q ss_pred             HHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhh-------CcchhhHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAGSL  335 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~f-------g~~~~g~~~g~~~~~~~lgs~  335 (424)
                      . .........+.+++..  .+...+++..++.|++.+...++.+++++|..       |.++-|..++......-+|..
T Consensus       297 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a  375 (460)
T PRK11462        297 W-WTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA  375 (460)
T ss_pred             H-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            1 1111111112222222  22223455566678877777766666766664       356668888888889999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 014462          336 IFSGVIASGIYDYYA  350 (424)
Q Consensus       336 l~~~~l~g~l~d~~~  350 (424)
                      + ++.+.|.+.+..|
T Consensus       376 l-g~~i~g~iL~~~G  389 (460)
T PRK11462        376 F-GGALIGWMLAYGG  389 (460)
T ss_pred             H-HHHHHHHHHHHcC
Confidence            7 8999998887654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.77  E-value=6e-08  Score=101.99  Aligned_cols=127  Identities=14%  Similarity=0.012  Sum_probs=107.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  310 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~  310 (424)
                      ..+++.++..+|.++.|+++|++|||+.+      .++.++..++.+..+ ..+.+.+.+..++.|++.++..++...++
T Consensus       123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~------~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVL------LVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHhhheehHhhcccHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            77888999999999999999999999765      666666666665555 45677889999999999999999999999


Q ss_pred             HHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHH
Q 014462          311 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM  390 (424)
Q Consensus       311 se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~  390 (424)
                      +|++++|+|+.+.++ ......++.+ ++.+++++..  +                                ||+.+++.
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~--~--------------------------------Wr~~~~~~  240 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITR--D--------------------------------WRWLFWII  240 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHh--h--------------------------------HHHHHHHH
Confidence            999999999999999 7677777776 6888887765  3                                99999999


Q ss_pred             HHHHHHHHHH
Q 014462          391 AGLCIIAMVM  400 (424)
Q Consensus       391 a~~~~~~~~l  400 (424)
                      ....++.++.
T Consensus       241 ~~~~~~~~~~  250 (521)
T KOG0255|consen  241 SIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHH
Confidence            9888877666

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.75  E-value=1.3e-07  Score=99.41  Aligned_cols=133  Identities=19%  Similarity=0.197  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHH
Q 014462          230 SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPA  308 (424)
Q Consensus       230 ~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~  308 (424)
                      +++.+...+++.+|.+.+|+++|++|||+.+      .++.++..++.++.+ ..+...++++.++.|+|.|....+.+.
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l------~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi  165 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTL------LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV  165 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence            4699999999999999999999999999765      666777777777665 346778999999999999999999999


Q ss_pred             HHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHH
Q 014462          309 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCG  388 (424)
Q Consensus       309 ~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~  388 (424)
                      +++|+-|++.||...++......+|..+ + ++.|...++..                              ..||..+.
T Consensus       166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~-~-~~~~~~~~~~~------------------------------~~Wr~~~~  213 (513)
T KOG0254|consen  166 YISEIAPAHIRGTLVSLYQLFITIGILL-G-YCINYGTSKVY------------------------------AGWRIPLG  213 (513)
T ss_pred             hHhhcCChhhhHHHHHHHHHHHHHHHHH-H-HHHhhhhccCC------------------------------ccHHHHHH
Confidence            9999999999999999999999877765 5 55565443320                              12998888


Q ss_pred             HHHHHHHHHHHH
Q 014462          389 IMAGLCIIAMVM  400 (424)
Q Consensus       389 i~a~~~~~~~~l  400 (424)
                      +....+++-.+.
T Consensus       214 ~~~i~~~~~~~~  225 (513)
T KOG0254|consen  214 LALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHHH
Confidence            877777776666

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.73  E-value=3.9e-06  Score=84.70  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=97.6

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      +.++++.+|......++.......+....+.+.++ +|++....  +.....++..+|.++.+++.||.+++. .    .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~----~  276 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-W----Q  276 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----H
Confidence            46677777765555444433333333445566666 78886543  445556667777777777777776321 1    1


Q ss_pred             HHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~---~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      .....++..+..+...   ..+.+.+....++.|++.|...+...+...+.++ +++|+..++.+....+|+.+ ++.++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~-~~~~~  354 (394)
T PRK11652        277 SVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGL-AALLS  354 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHH-HHHHH
Confidence            1111122212111111   1234456667788899999999999999999996 67899999999999999997 88888


Q ss_pred             HHHHhh
Q 014462          343 SGIYDY  348 (424)
Q Consensus       343 g~l~d~  348 (424)
                      |.+.+.
T Consensus       355 ~~~~~~  360 (394)
T PRK11652        355 AMLPQT  360 (394)
T ss_pred             HHccCC
Confidence            876544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.73  E-value=2.7e-07  Score=94.22  Aligned_cols=165  Identities=13%  Similarity=0.181  Sum_probs=110.8

Q ss_pred             hcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-ch------
Q 014462          215 DNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW------  284 (424)
Q Consensus       215 ~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~~------  284 (424)
                      .+++++++ ++|.++..+  +.++..++.++..++.|+++||.++|+.-.|+ ++..+..+.+++.+++.. .+      
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~-~i~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRP-WLLIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcch-hHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence            34555554 589988765  88889999999999999999996554322222 234444555554444332 11      


Q ss_pred             hHHHHHHHHHHHHHhhhhHhHHHHHHHHhh-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC
Q 014462          285 PGEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  363 (424)
Q Consensus       285 ~~~l~~~~~l~G~~~G~~~~~~~~~~se~f-g~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~  363 (424)
                      ...+++..++.+++++....+..+...|+. +.++|++..++.+.+..+|+.+ ++.+.+.+....+.+.          
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~~----------  167 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGGD----------  167 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc----------
Confidence            234455566778888887778888888887 4678999999999998998886 5666666654332100          


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          364 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       364 ~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                     ....|+..+.+.++++++..++.....+
T Consensus       168 ---------------~~~g~~~~~~i~~~l~~~~~~~~~~~~~  195 (437)
T TIGR00792       168 ---------------DKFGWFMFALVLALIGVVSLIICFFGTK  195 (437)
T ss_pred             ---------------ccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence                           0113999999999888877666554443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.71  E-value=7.1e-08  Score=99.99  Aligned_cols=143  Identities=14%  Similarity=0.200  Sum_probs=117.0

Q ss_pred             cCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHH
Q 014462          224 LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLS  298 (424)
Q Consensus       224 ~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~---~~~~~~l~~~~~l~G~~  298 (424)
                      +.++..+  .+.+....|..++.+.+|++.||+|.|+..      ..+.++.+++.++..   ....+.+.+..++.|++
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~------~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF------FISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            3444433  389999999999999999999999988755      555555555555432   22334678899999999


Q ss_pred             hhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhhhccCCCCCcccCCCCCCcc
Q 014462          299 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY-YAEKQAGLLWKYNGNMLPVSFRDQETPTC  377 (424)
Q Consensus       299 ~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  377 (424)
                      .|..++.+..+.+.+.|++++++..+++..+..+|.++ +-+++|++-+. .|                           
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~-~mp~sg~lc~s~~G---------------------------  193 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTII-TMPVSGLLCESSLG---------------------------  193 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhccCCC---------------------------
Confidence            99999999999999999999999999999999999997 77799999887 44                           


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          378 LGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       378 ~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                           |+.+|++.++++++-.++-.++.
T Consensus       194 -----W~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  194 -----WPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             -----CchHHHHHHHHHHHHHHHHHHHh
Confidence                 99999999998888766655554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.70  E-value=2e-05  Score=82.60  Aligned_cols=153  Identities=13%  Similarity=0.058  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchh-HHHHHHHHHHHHHHHH-------HHh----chhHHHHHHHHHHHH
Q 014462          230 SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP-VAMAVAQVVMAFALLY-------YAI----GWPGEIYVTTVLVGL  297 (424)
Q Consensus       230 ~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~-~~l~~~~~~~~~~~ll-------~~~----~~~~~l~~~~~l~G~  297 (424)
                      +.+.++..++..+..++.|++.||+++|+.-+++ .-+.++.++.+++++.       +..    .+.+++....++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            3466777788878888899999999988632221 2224455555555432       111    234567778999999


Q ss_pred             HhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcc
Q 014462          298 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTC  377 (424)
Q Consensus       298 ~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  377 (424)
                      |.+...++..+.+.+..|++..|.+.++.++...+|+.+ |..+++........+              ++...+     
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l-g~~l~~~~~~~~~~~--------------~~~~~~-----  451 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL-GGYVATFTAVPDNIT--------------DPLETL-----  451 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccc--------------cchhhh-----
Confidence            999999999999999999999999999999999999997 777766442111100              000000     


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          378 LGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       378 ~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                         .-|.+.|...++.+++..++.+++.
T Consensus       452 ---~~~~~~f~~~~~~~~~~~v~~~~~~  476 (489)
T PRK10207        452 ---PVYTNVFGKIGLVTLGVAVVMALMV  476 (489)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0177888888887776666555543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.69  E-value=6.4e-08  Score=95.46  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHhhhhHhHHHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAA  310 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~~~~~  310 (424)
                      +-|.+++..++..+.+|.++|++|||..+      .++.+..++..++.+.. +...+.++.++.|+..|-. ++.-+++
T Consensus        73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvl------l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAii  145 (451)
T KOG2615|consen   73 LGSSFSILQFISSPLWGCLSDRYGRKPVL------LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAII  145 (451)
T ss_pred             HhhHHHHHHHHhhhhhhhhhhhhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHH
Confidence            78899999999999999999999999654      66666666666665543 3445666699999998766 5788999


Q ss_pred             HHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          311 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       311 se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                      +|+++.|+++.+.+.+.++.++|-++ ||.++|++..
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~  181 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ  181 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhh-cchhhhHHHh
Confidence            99999999999999999999999998 9999999887

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.66  E-value=5.6e-11  Score=122.15  Aligned_cols=161  Identities=16%  Similarity=0.168  Sum_probs=106.6

Q ss_pred             HHhcHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH------hch--
Q 014462          213 VIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA------IGW--  284 (424)
Q Consensus       213 ~~~~l~~i~~~~g~s~~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~------~~~--  284 (424)
                      ..++.+++.++.|.+.......+..+...++.+++.++.||+|||+..      ..+..+++++.+.+.      ...  
T Consensus       272 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~------i~~~~~~~~~~~~~~~~~~~~~~~~~  345 (451)
T PF00083_consen  272 IFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLL------IIGLLLMAICSLILGIIFFLGVSSSS  345 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccc
Confidence            334566677777777663355566677888889999999999999755      333444333333221      111  


Q ss_pred             --hHHHHHHHHHHHHHhhh-hHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 014462          285 --PGEIYVTTVLVGLSYGA-HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  361 (424)
Q Consensus       285 --~~~l~~~~~l~G~~~G~-~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~  361 (424)
                        .....+...+...+++. ..++.+.+++|+||++.|++..++......+++++ ++.+...+.+..+           
T Consensus       346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~-----------  413 (451)
T PF00083_consen  346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI-IPFLFPYLFNNLG-----------  413 (451)
T ss_pred             ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-----------
Confidence              11222233333333442 33455588899999999999999999999999987 7877776665544           


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014462          362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  412 (424)
Q Consensus       362 ~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~~  412 (424)
                                           ....|.+.+++++++.+...++..+||...
T Consensus       414 ---------------------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~  443 (451)
T PF00083_consen  414 ---------------------GWGVFLIFAGVCLIAIIFVYFFLPETKGKT  443 (451)
T ss_pred             ---------------------ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence                                 245677777778888877777778887643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=3.3e-07  Score=95.47  Aligned_cols=143  Identities=14%  Similarity=0.212  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHH
Q 014462          231 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAA  310 (424)
Q Consensus       231 ~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~  310 (424)
                      ...+++.++..+|.+.+|++.||+.-.+.+     ...+.+...++.+.....+.+.+.+..++.|++-++.|+....++
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l-----~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l  159 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGL-----SVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL  159 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence            488999999999999999999999733222     122222222332333356778889999999999999999999999


Q ss_pred             HHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHH
Q 014462          311 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM  390 (424)
Q Consensus       311 se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~  390 (424)
                      +.+|+.+++|+..++.+...++|+++ |+.++..++...+..                          +..+||+.|++.
T Consensus       160 g~wy~~~e~g~r~~~~~a~~~~g~i~-ggliA~g~~~~~~~~--------------------------~~~gW~~~FiI~  212 (495)
T KOG2533|consen  160 GNWYGKSERGLRMGIWYASASLGNIF-GGLIAYGVFKLNGSG--------------------------GLAGWRWLFIIE  212 (495)
T ss_pred             HhhcChhhhhhhHHHHHHhcchhhHH-HHHHHHHhhhhcCCC--------------------------CcCCceeehhHH
Confidence            99999999999999999999999996 999998877654411                          122499999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 014462          391 AGLCIIAMVMSLIVV  405 (424)
Q Consensus       391 a~~~~~~~~l~~~l~  405 (424)
                      ++++++..++.++..
T Consensus       213 G~i~~~~gi~~f~~l  227 (495)
T KOG2533|consen  213 GVITLVLGIVVFFFL  227 (495)
T ss_pred             HHHHHHHHheEEEEe
Confidence            999988776665443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.64  E-value=3e-06  Score=87.02  Aligned_cols=155  Identities=15%  Similarity=0.130  Sum_probs=105.7

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH-HHHH-HHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          189 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSM-ISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       189 ~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~-~~sl-~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      ..++|+.+..+.+..++..........-+.++.+. +|.++... .... ......++.+++..+.+|+|+|+.+     
T Consensus       231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-----  305 (467)
T COG2211         231 LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-----  305 (467)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-----
Confidence            46777777766665544433322222223333333 45554433 3333 4444445589999999999998765     


Q ss_pred             HHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhh-------CcchhhHHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAGSL  335 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~f-------g~~~~g~~~g~~~~~~~lgs~  335 (424)
                       .++.++.+++.+++.+   .+...+++..++.+++.+..+++.+++++|..       |.|.-|..|+++....-+|..
T Consensus       306 -~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a  384 (467)
T COG2211         306 -LIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA  384 (467)
T ss_pred             -HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence             5556666666555432   23456667778889999999999999988765       556679999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 014462          336 IFSGVIASGIYDYYA  350 (424)
Q Consensus       336 l~~~~l~g~l~d~~~  350 (424)
                      + +..+.|++.+..|
T Consensus       385 l-a~~~~g~~L~~~G  398 (467)
T COG2211         385 L-AGFIPGWILGAIG  398 (467)
T ss_pred             H-HHHHHHHHHHHcC
Confidence            7 8999999888776

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.63  E-value=4.6e-06  Score=87.79  Aligned_cols=181  Identities=18%  Similarity=0.230  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCch-hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~-~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      ++.++.+.+..|-.......+.+..+++.+..|.+.. .....+.++.++++..++.++.||+|||+.+      ..+..
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll------l~s~~  367 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL------LFGAA  367 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHhHH
Confidence            3344444444444444445566788999999888755 4566777888888888889999999998644      55666


Q ss_pred             HHHHHHHHHHhc-----h--------hHHHHHHHHHHHHHhhhhH-hHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 014462          272 VMAFALLYYAIG-----W--------PGEIYVTTVLVGLSYGAHW-AIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  337 (424)
Q Consensus       272 ~~~~~~ll~~~~-----~--------~~~l~~~~~l~G~~~G~~~-~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~  337 (424)
                      .|.++.++++..     .        .+...+...+.-.++...+ ++.+.+.+|+||.+.|+++.++....+.+.+++.
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v  447 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI  447 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence            666666554311     0        1111122222222333333 4455688999999999999999888888777642


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH-HHHHHhhhhhHHH
Q 014462          338 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV-MSLIVVHRTKSVY  412 (424)
Q Consensus       338 ~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~-l~~~l~~~~~~~~  412 (424)
                           ...+.......                            .....|...++++.++.+ ...+...+||...
T Consensus       448 -----~~~~~~~~~~~----------------------------~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s  490 (513)
T KOG0254|consen  448 -----SFFFPFITEAL----------------------------GIGGTFGYFGGICLLSLIIFVFFFVPETKGLT  490 (513)
T ss_pred             -----HHHHHHHHHhc----------------------------cccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence                 22221111000                            035667777777777777 5666677776644

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.52  E-value=6.6e-07  Score=90.33  Aligned_cols=176  Identities=15%  Similarity=0.078  Sum_probs=117.1

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHcCCCchhH----------HHHHHHHHhhh-hhhhhhhhhhhhhhcccCchhHHHHHH
Q 014462          201 FSLVLASGSGLTVIDNLGQICQSLGYADTSI----------YVSMISIWNFL-GRVGGGYFSEAIVRKFAYPRPVAMAVA  269 (424)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~----------~~sl~si~~~~-gr~~~G~lsd~~g~k~~~~r~~~l~~~  269 (424)
                      ..+|..-.+.+...-+...|.++.|+.+...          .-.+....+.+ |-.++.+++|++|||+..      ..+
T Consensus       311 ~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq------~~G  384 (538)
T KOG0252|consen  311 GTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ------LMG  384 (538)
T ss_pred             HHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH------Hhh
Confidence            3444444555555557788999888754321          22333344444 888899999999998644      666


Q ss_pred             HHHHHHHHHHHHhchh-----HHHHHHHHHHH-HHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          270 QVVMAFALLYYAIGWP-----GEIYVTTVLVG-LSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       270 ~~~~~~~~ll~~~~~~-----~~l~~~~~l~G-~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      ..++.+..+.++....     ..+.+...+.. +++-+-.+....+.+|.||++.||+.+|+....+-+|+++ +....+
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv-g~~~F~  463 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV-GAFGFL  463 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHH-HHHHhh
Confidence            6677666665553221     11222222332 3444445566778899999999999999999999999998 787777


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSV  411 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~  411 (424)
                      .+.|+.-  ..                         ...++.+|++++++++++.+..+++. ++++.
T Consensus       464 ~~t~~~y--p~-------------------------~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~  503 (538)
T KOG0252|consen  464 YLTDHNY--PP-------------------------NIGVRNVFIILAGCMLLGILFTLLIP-ETKGK  503 (538)
T ss_pred             HhhhccC--Cc-------------------------cccchHHHHHHHHHHHHhHheeEEee-ccccc
Confidence            7666321  00                         00289999999999999998888776 55543

>PRK09669 putative symporter YagG; Provisional

Probab=98.48  E-value=5.6e-06  Score=85.30  Aligned_cols=164  Identities=15%  Similarity=0.101  Sum_probs=106.2

Q ss_pred             hcHHHHH-HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHH-HHhch------
Q 014462          215 DNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY-YAIGW------  284 (424)
Q Consensus       215 ~~l~~i~-~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll-~~~~~------  284 (424)
                      ..++.++ +.+|.+...+  +.++.-++.++.-|+.|+++||...|..-.||++ ..+.+..+++..+ +....      
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i-l~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL-LWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH-HHHHHHHHHHHHHHHhCCCCCcchH
Confidence            3455555 4589998755  8888899999999999999999655433333433 3344444444333 22211      


Q ss_pred             hHHHHHHHHHHHHHhhhhHhHHHHHHHHhh-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC
Q 014462          285 PGEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  363 (424)
Q Consensus       285 ~~~l~~~~~l~G~~~G~~~~~~~~~~se~f-g~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~  363 (424)
                      ...+++..++.+.++.....+..+..+|+. ..++|++..++-.....+|+.+ ++.+...+....+...          
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i-~~~~~~pl~~~~~~~~----------  177 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI-VSVIALPLVDILGKGD----------  177 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc----------
Confidence            234455566677777777778889999988 4577898888888888887776 5555444443332100          


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          364 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       364 ~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                     ...+|+.++.+.++++++..+++++..
T Consensus       178 ---------------~~~g~~~~~~i~~ii~~v~~~~~~~~~  204 (444)
T PRK09669        178 ---------------EQKGYFYAMMVMGLLGVVLFFCCFFMT  204 (444)
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence                           011389899988888877766655443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.48  E-value=2.3e-05  Score=81.81  Aligned_cols=145  Identities=14%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchh-HHHHHHHHHHHHHHHHHH----------hchhHHHHHHHHHHHHH
Q 014462          230 SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP-VAMAVAQVVMAFALLYYA----------IGWPGEIYVTTVLVGLS  298 (424)
Q Consensus       230 ~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~-~~l~~~~~~~~~~~ll~~----------~~~~~~l~~~~~l~G~~  298 (424)
                      ..+.++.+++-.+..+...++..++.||..-+++ .-+.++.++.++++..+.          ..+.+++.+..++.++|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            3477788888888777766665666665222222 223566777766665543          23567788899999999


Q ss_pred             hhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCccc
Q 014462          299 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCL  378 (424)
Q Consensus       299 ~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  378 (424)
                      .....+...+.+++..|.+.+|...|+..+...+|+.+ ++.+.+...+..+                            
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l-~~~~~~~~~~~~~----------------------------  445 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL-GGYLATFGAVPQG----------------------------  445 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc----------------------------
Confidence            99999999999999999999999999999999999997 8888877665444                            


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          379 GSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       379 g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                          |...|...+.++++..++.+++.++
T Consensus       446 ----~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       446 ----VTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                6777887777777766666554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.46  E-value=6.9e-06  Score=80.96  Aligned_cols=150  Identities=17%  Similarity=0.184  Sum_probs=122.2

Q ss_pred             hcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 014462          215 DNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTT  292 (424)
Q Consensus       215 ~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~  292 (424)
                      ..++++-+++|.|.+.+  ++++.-++-.+..+...++..|+|.+|.+      ..++++.+++.++=...+...++.+.
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l------~~~Llli~~G~~iR~~~~~~~L~~gt  106 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL------FLALLLIAAGILIRSLGGLPLLFLGT  106 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH------HHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            35677788899987765  88898999999999999999999987755      67777777777664444567889999


Q ss_pred             HHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCC
Q 014462          293 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQ  372 (424)
Q Consensus       293 ~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  372 (424)
                      .+.|.|.+..+.+.|..+-+.|| |+.+...|++.++..+|+.+ ++.+.--+.++.+                      
T Consensus       107 ~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaL-aa~lavpla~~~~----------------------  162 (395)
T COG2807         107 LLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAAL-AAALAVPLAQHSG----------------------  162 (395)
T ss_pred             HHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHH-HhhhhhHHHHhhc----------------------
Confidence            99999999999999999999995 66799999999999998886 7766666655542                      


Q ss_pred             CCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          373 ETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       373 ~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                               .|+.++.+++..++++++.-+-
T Consensus       163 ---------gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         163 ---------GWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             ---------cHHHHHHHHHHHHHHHHHHHhh
Confidence                     2999999999999887655433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.43  E-value=3.4e-06  Score=90.95  Aligned_cols=160  Identities=19%  Similarity=0.270  Sum_probs=116.2

Q ss_pred             HHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhh-hcccCchhHHHHHHHHHHHHHHHHHHhch----
Q 014462          213 VIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIV-RKFAYPRPVAMAVAQVVMAFALLYYAIGW----  284 (424)
Q Consensus       213 ~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g-~k~~~~r~~~l~~~~~~~~~~~ll~~~~~----  284 (424)
                      +..++..+++ .+|++++.+  +...+.....+..+++|+++|++- +++.+      .++.++..+++.+++...    
T Consensus         6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI------l~~~ii~~lG~~llai~a~~~~   79 (654)
T TIGR00926         6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI------LYLSIVYVVGHALLSFGAIPSS   79 (654)
T ss_pred             cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHhccCccc
Confidence            3344444443 478876644  666777777788899999999884 44333      556666777776654321    


Q ss_pred             -----hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 014462          285 -----PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK---SFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL  356 (424)
Q Consensus       285 -----~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~---~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~  356 (424)
                           ....+++.+++++|.|+.-+...+...+.|..+   .+-..+++...+.++|+++ ++.+.+++.+..+      
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~~~------  152 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLI-STIITPILRGDVG------  152 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc------
Confidence                 123567888888999999999999999999754   4788999999999999997 8888887754432      


Q ss_pred             hhhccCCCCCcccCCCCCCcccC-CcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          357 LWKYNGNMLPVSFRDQETPTCLG-SICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~c~g-~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                          |+| ..||..+|.+.+++.++++++.....
T Consensus       153 --------------------~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       153 --------------------CFGCQDCYPLAFGVPAILMILALIVFMAGS  182 (654)
T ss_pred             --------------------ccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence                                444 34799999999999988877665433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.41  E-value=1.6e-05  Score=79.38  Aligned_cols=159  Identities=13%  Similarity=0.060  Sum_probs=124.9

Q ss_pred             cHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH----hchhHHHH
Q 014462          216 NLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IGWPGEIY  289 (424)
Q Consensus       216 ~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~----~~~~~~l~  289 (424)
                      ..|++.+.++.+..++  +-..+..+.+++.+..|++.+|+|+|+.+      ..++.++++++.++.    ..+...+.
T Consensus        35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi------~lgL~l~avg~~lF~pAa~~~~y~~FL  108 (422)
T COG0738          35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI------VLGLLLYAVGAALFWPAASSKSYGFFL  108 (422)
T ss_pred             hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH------HHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            4667777788886654  55566677788999999999999999877      889999999998874    23455677


Q ss_pred             HHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhhhhhh
Q 014462          290 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-----------AEKQAGLLW  358 (424)
Q Consensus       290 ~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~-----------~~~~~~~~~  358 (424)
                      ++.++.|.|.|..-+...++++.+.+.++-....|+....+++|+.+ +|.+++.+.++.           +.+..    
T Consensus       109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils~~~~~~~~~~~~~~~~~----  183 (422)
T COG0738         109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL-GPLLGSSLILSGVALTMSAAQILAIKGA----  183 (422)
T ss_pred             HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhhhhhccCHHHHHHHHHH----
Confidence            78899999999999999999999999988899999999999999998 899999887741           11100    


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          359 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                          -...++..+..++.++++-.+.....+
T Consensus       184 --------------------~~~~v~~pYl~~~~~lvll~v~~~~~k  210 (422)
T COG0738         184 --------------------DASSVQFPYLILAGLLVLLAVLILLSK  210 (422)
T ss_pred             --------------------HHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence                                001288899999988777665555444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.41  E-value=1.8e-06  Score=88.52  Aligned_cols=162  Identities=16%  Similarity=0.211  Sum_probs=118.7

Q ss_pred             hcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhh----hhhhcccCchhHHHHHHHHHHHHHHHHHHhc-h--
Q 014462          215 DNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSE----AIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-W--  284 (424)
Q Consensus       215 ~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd----~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-~--  284 (424)
                      .++..++.+ .|.++...  +.....+++++--|+.|+++|    |+||||.+     +.++.++.+++..++... +  
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~-----~l~g~i~~~~~~~llf~~~p~~   96 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW-----ILIGAILLALSFFLLFSPPPAG   96 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE-----eehhhHHHHHHHHHhhccccch
Confidence            345555544 79998654  777888999999999999999    77776644     355666666666554422 1  


Q ss_pred             ------hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 014462          285 ------PGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  357 (424)
Q Consensus       285 ------~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg-~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~  357 (424)
                            ..++.+..++..+++.....+..+..+|+.+ .++|.+..+.-.....+|+.+ ...+.+.+.+..+..+.   
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l-~~~~~~~l~~~~g~~~~---  172 (428)
T PF13347_consen   97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL-ASFLAPILVSWFGGGDT---  172 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCcc---
Confidence                  1234566666788888888888999999997 468999999999999999976 56777777765552210   


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          358 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                                            ...|++...+.+++++++.++.....++
T Consensus       173 ----------------------~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  173 ----------------------SNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             ----------------------chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence                                  0139999999999999888888777666

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.40  E-value=0.00013  Score=73.35  Aligned_cols=185  Identities=16%  Similarity=0.122  Sum_probs=124.9

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      ...+++...++...+.+..+...-..-+-+|. +-+|++..++  +..+.+.+..+|-.+.|++..+-..|+..    . 
T Consensus       204 ~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~----a-  278 (403)
T PF03209_consen  204 VWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT----A-  278 (403)
T ss_pred             HHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH----H-
Confidence            44455545554444444433333223344444 4589986543  99999999999999999887743332222    1 


Q ss_pred             HHHHHHHHHHHHH--HH--hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLY--YA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       267 ~~~~~~~~~~~ll--~~--~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      ..++...++++.+  ++  ..+.+.+....+++|++.|....-.-+.+.++-..++-|+..|....+..++..+ +..++
T Consensus       279 ~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl-g~~~G  357 (403)
T PF03209_consen  279 ALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL-GTFLG  357 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH-HHHHH
Confidence            2334333333333  22  3456788889999999999999999999999999999999999999999999987 89999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 014462          343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~  402 (424)
                      |.+.|-...-.+        +      +        ..-.|..+|.+=+.+.+++..+..
T Consensus       358 G~~~D~~~~~~~--------~------~--------~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  358 GALRDLVRALFG--------N------S--------PALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHhcc--------C------C--------cchHHHHHHHHHHHHHHHHHHHHH
Confidence            999887542110        0      0        011399999998887777665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.38  E-value=1.6e-05  Score=82.71  Aligned_cols=173  Identities=18%  Similarity=0.122  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  273 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~  273 (424)
                      .++...+++.... ......++.+++ ++|.+.++.  ++++..+...+ .+++|.++|+++. ....|+..+.++.++.
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i-~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPL-FGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-CCccchHHHHHHHHHH
Confidence            4444445544444 333445555555 589998765  77888888887 5559999999951 1122223445555444


Q ss_pred             -HHHHHHHHh-ch-hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          274 -AFALLYYAI-GW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGA---LYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       274 -~~~~ll~~~-~~-~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~---~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                       +++...++. .+ .....+..++.+++.+.+....-+++.|..+ ++.+.   ..+.......+|..+ ++.++|.+.+
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~v-g~~l~G~l~~  183 (468)
T TIGR00788       106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLI-SSLLGGPLLD  183 (468)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHH-HHHHHHHHHH
Confidence             233222332 22 2233346778889999999999999999997 54433   444444455678887 8999999988


Q ss_pred             hhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          348 YYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      ..+                                |+..|++.+++.++..+...+++.
T Consensus       184 ~~~--------------------------------~~~~f~~~a~l~ll~~~~~~~~~E  210 (468)
T TIGR00788       184 KTL--------------------------------TRILFLITAALLLLQLFVSNLSKE  210 (468)
T ss_pred             hcC--------------------------------cchHHHHHHHHHHHHHHHHHhccc
Confidence            776                                899999999888887554444443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.38  E-value=5.2e-06  Score=85.95  Aligned_cols=135  Identities=18%  Similarity=0.239  Sum_probs=101.2

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH--H--hchhHHHHHHHHHHHHHhhhhHhHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY--A--IGWPGEIYVTTVLVGLSYGAHWAIVP  307 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~--~--~~~~~~l~~~~~l~G~~~G~~~~~~~  307 (424)
                      .++.+.+++++|...+|+++|++|||..+      .+..++..++.+++  +  ......+.++.++.|+..|...+..+
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l------~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNAL------LLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            89999999999999999999999999644      33333333332222  2  45567889999999999999999999


Q ss_pred             HHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHH
Q 014462          308 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS-GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSIT  386 (424)
Q Consensus       308 ~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~  386 (424)
                      .++.|.-|.+.||..-.+..++..+|..+ +..++. .+...+.                               -|...
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll-~~~~~l~~ilGt~~-------------------------------~W~~l  186 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILL-GQVLGLPSLLGTED-------------------------------LWPYL  186 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHH-HHHHccHHhcCCCc-------------------------------chHHH
Confidence            99999999999999999999998888876 544333 3332221                               28888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 014462          387 CGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       387 f~i~a~~~~~~~~l~~~l  404 (424)
                      +..-.+.+++..++..++
T Consensus       187 ~~~~~i~~~~~l~~l~~~  204 (485)
T KOG0569|consen  187 LAFPLIPALLQLALLPFL  204 (485)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            887777777665555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.34  E-value=7.2e-06  Score=83.29  Aligned_cols=153  Identities=15%  Similarity=0.178  Sum_probs=91.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHH
Q 014462          191 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  267 (424)
Q Consensus       191 l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~  267 (424)
                      .+++.||.+...+++..++.-.....++..+++ .|++.+++  +.+..++...+..++.|.++||++.||..    ...
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L----l~~   79 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL----LWF   79 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH----HHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH----HHH
Confidence            477889987777777666655555566777765 89998776  88999999999999999999999987654    112


Q ss_pred             HHHHHH-HHHHHHHHhch--hHHHHHHHHH----HHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          268 VAQVVM-AFALLYYAIGW--PGEIYVTTVL----VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       268 ~~~~~~-~~~~ll~~~~~--~~~l~~~~~l----~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                      +..++. ....+.+...+  ....+++.++    .|+++.+..++.=+++.+.-  ++.+.-||=.-+.+++|-.+ +..
T Consensus        80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai-~s~  156 (412)
T PF01306_consen   80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAI-ASL  156 (412)
T ss_dssp             HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHH-HHH
Confidence            222222 12222211111  1123333333    34444444444433333332  44566677777788888887 788


Q ss_pred             HHHHHHhhhh
Q 014462          341 IASGIYDYYA  350 (424)
Q Consensus       341 l~g~l~d~~~  350 (424)
                      ++|.+++...
T Consensus       157 ~~G~L~~i~p  166 (412)
T PF01306_consen  157 LAGILFNINP  166 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HhheeeeeCc
Confidence            8999887543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.33  E-value=5.5e-05  Score=77.33  Aligned_cols=159  Identities=11%  Similarity=-0.108  Sum_probs=93.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +++.++++.+|...+..++.......+....|.+.++ .|++..+.  .......+..++..+.+.+.++..+++..-+.
T Consensus       211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  290 (413)
T PRK15403        211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRA  290 (413)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence            3458899999998887777766666677778888877 58887654  33445555566655555544332222211000


Q ss_pred             -HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          264 -VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       264 -~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                       ....++.+++.++... ........++..++.++|.|...+......-.-. ....|++.++.+.....+..+ ++.+.
T Consensus       291 ~~~~~ig~~l~~~~~~~-~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~~-~~~~~  367 (413)
T PRK15403        291 VPIQLVGLALLIVGNLL-WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMAV-SVEIG  367 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHH-HHHHH
Confidence             0111122222222111 1122223466777888888887766664332222 224688888888888777776 78888


Q ss_pred             HHHHhh
Q 014462          343 SGIYDY  348 (424)
Q Consensus       343 g~l~d~  348 (424)
                      |++++.
T Consensus       368 g~~~~~  373 (413)
T PRK15403        368 RWLWFN  373 (413)
T ss_pred             HHHHHc
Confidence            887765

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.30  E-value=0.00084  Score=70.57  Aligned_cols=152  Identities=15%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc----------hhHHHHHHHHHHHHHh
Q 014462          230 SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----------WPGEIYVTTVLVGLSY  299 (424)
Q Consensus       230 ~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~----------~~~~l~~~~~l~G~~~  299 (424)
                      +++.++.+++..+..++.+++..|.++|...  +.-+.++.++++++++.+...          +.+++....++.|++.
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~--~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge  396 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPM--PHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE  396 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCc--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH
Confidence            4577788888888888888887787766433  334567777777777664321          1346788899999999


Q ss_pred             hhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccC
Q 014462          300 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLG  379 (424)
Q Consensus       300 G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g  379 (424)
                      +...+...+.+.+.-|++.+|..+|+..++..+|+.+ ++.+.+.........                       ....
T Consensus       397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~~-----------------------~~~~  452 (500)
T PRK09584        397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNVT-----------------------DPLM  452 (500)
T ss_pred             HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccc-----------------------cchh
Confidence            9999999999999999999999999988888887775 555555332111000                       0000


Q ss_pred             C-cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          380 S-ICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       380 ~-~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                      . ..|...|...+.++++..++.+++.++
T Consensus       453 ~~~~~~~~f~~~~~~~~~~a~~~~~~~~~  481 (500)
T PRK09584        453 SLEVYGRVFLQIGIATAVIAVLMLLTAPK  481 (500)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 127888988888777655555544433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.29  E-value=0.00026  Score=74.53  Aligned_cols=153  Identities=11%  Similarity=0.067  Sum_probs=91.2

Q ss_pred             CCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          185 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       185 ~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      ..+.++++.+++........+.........+-+......+|.+... ...+.+.....+....+...|++|||...    
T Consensus       309 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~-~~~~~~~~~~p~~~~~~~~~~~~gR~~~~----  383 (521)
T KOG0255|consen  309 ISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYL-NFTLSGLVELPAYFRNGLLLPEFGRRPPL----  383 (521)
T ss_pred             CchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHH-HHHHHHHHHhhHHHHHHHHHHHhCcHHHH----
Confidence            4577888887543222222222111111111222233334433321 22222234445556668888999877543    


Q ss_pred             HHHHHHHHHHHHHHHHHhch--hH--HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYAIGW--PG--EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~~~~--~~--~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                        ..++.+..++++.+....  ..  ...+...+..++.+..+.....+.+|++|+..|+.+.+..++...+|+++ +|.
T Consensus       384 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~-ap~  460 (521)
T KOG0255|consen  384 --FLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSIL-APL  460 (521)
T ss_pred             --HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence              666666666666554322  22  24445555556777778888999999999999999999999999999997 787


Q ss_pred             HHHHH
Q 014462          341 IASGI  345 (424)
Q Consensus       341 l~g~l  345 (424)
                      +.-..
T Consensus       461 ~~~~~  465 (521)
T KOG0255|consen  461 FPLLL  465 (521)
T ss_pred             HHHHH
Confidence            66543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.28  E-value=4e-06  Score=87.33  Aligned_cols=157  Identities=10%  Similarity=0.051  Sum_probs=104.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +++.++++..|......++......+..+.+-.+ .+.+|+++...  +....++++.+|..+.+++.+|++.|+.    
T Consensus       245 l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~----  320 (468)
T TIGR00788       245 LRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL----  320 (468)
T ss_pred             HHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH----
Confidence            4556778888764443333111111111111001 13478887654  6666778888888888777666665543    


Q ss_pred             HHHHHHHHHHHHHHHHHH--h---------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYA--I---------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA  332 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~--~---------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~l  332 (424)
                        +.++.++.+++.+...  .         .+...+....++.++++|..+.+...++++..|.++.|+.|++.+....+
T Consensus       321 --l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~l  398 (468)
T TIGR00788       321 --FGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHL  398 (468)
T ss_pred             --HHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHH
Confidence              3555555555443221  0         11224455678889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 014462          333 GSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       333 gs~l~~~~l~g~l~d~~~  350 (424)
                      |+.+ ++.++|.+++..|
T Consensus       399 g~~v-~~~~gg~l~~~~g  415 (468)
T TIGR00788       399 GSSV-SGFLGVLLMETIG  415 (468)
T ss_pred             HHHH-HHHHHHHHHHHcC
Confidence            9997 8988889998876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.25  E-value=2.3e-05  Score=80.33  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             HHHhcHHHHH-HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHH
Q 014462          212 TVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGE  287 (424)
Q Consensus       212 ~~~~~l~~i~-~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~  287 (424)
                      .....++.++ +++|++..+.  +.+...++..++.+.+|+++||+|+||..     +.++.++.+++..+.. ..+.+.
T Consensus        20 ~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~   94 (418)
T TIGR00889        20 SWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKV-----YAVCHFAGALLLFFAAQVTTPAG   94 (418)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-----HHHHHHHHHHHHHHHHHhcCHHH
Confidence            3334455555 4589998765  88999999999999999999999764422     1333334434333333 344566


Q ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHhh--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          288 IYVTTVLVGLSYGAHWAIVPAAASELF--------GLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       288 l~~~~~l~G~~~G~~~~~~~~~~se~f--------g~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      +++..++.|++.+...+...+......        ....+.+.+|      .+|..+ +|.+.|.+
T Consensus        95 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~i-g~~l~g~l  153 (418)
T TIGR00889        95 MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIA-AMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHH-HHHHHHHh
Confidence            666777778877666655544432221        1111223333      356665 78777766

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.21  E-value=5.6e-05  Score=78.69  Aligned_cols=162  Identities=11%  Similarity=0.119  Sum_probs=104.8

Q ss_pred             HHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhh----hhcccCchhHHHHHHHHHHHHHHHHHHh-c-
Q 014462          213 VIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI----VRKFAYPRPVAMAVAQVVMAFALLYYAI-G-  283 (424)
Q Consensus       213 ~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~----g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~-  283 (424)
                      +...++.++++ .|.+...+  +..+..++.++.-|+.|+++||.    ||||.    + +..+.+.++++..++.. . 
T Consensus        25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp----~-il~g~i~~~i~~~llf~~p~   99 (473)
T PRK10429         25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKP----W-ILIGTLANSVVLFLLFSAHL   99 (473)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcch----h-HhhhhHHHHHHHHHHHcCCC
Confidence            33455666655 79998654  78888999999999999999965    55432    2 34445555555433322 1 


Q ss_pred             -h----hHHHHHHHHHHHHHhhhhHhHHHHHHHHhh-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 014462          284 -W----PGEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  357 (424)
Q Consensus       284 -~----~~~l~~~~~l~G~~~G~~~~~~~~~~se~f-g~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~  357 (424)
                       +    ...+.+..++.++++.....+..+..+|+- ..++|.+..++......+|+.+ .+.+...+.+..+....   
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~-~~~~~~~~~~~~g~~~~---  175 (473)
T PRK10429        100 FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV-TAGFTLPFVNYVGGGDR---  175 (473)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCch---
Confidence             1    123444556677888888888999999998 5788999999877777777766 44444433333221000   


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          358 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                            ...|+....+.+++.+++...++...
T Consensus       176 ----------------------~~g~~~~~~i~~~~~~~~~~~~~~~~  201 (473)
T PRK10429        176 ----------------------GFGFQMFTLVLIAFFIVSTIITLRNV  201 (473)
T ss_pred             ----------------------hhhHHHHHHHHHHHHHHHHHHHHcCc
Confidence                                  01277777777777776666555433

>PRK11462 putative transporter; Provisional

Probab=98.18  E-value=0.00011  Score=76.26  Aligned_cols=164  Identities=9%  Similarity=0.061  Sum_probs=109.6

Q ss_pred             hcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hch------
Q 014462          215 DNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGW------  284 (424)
Q Consensus       215 ~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~------  284 (424)
                      .++..++.+ .|.++..+  +..+.-++.++.-|+.|+++||...|..-.||++ .++.+.++++..++. ...      
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i-l~g~i~~~i~~~llf~~p~~s~~~~  108 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV-LFGALPFGIVCVLAYSTPDLSMNGK  108 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH-hHHHHHHHHHHHHHHhCCCCCcchH
Confidence            345555544 89987654  7788889999999999999998755444334444 444445555544432 211      


Q ss_pred             hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC
Q 014462          285 PGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  363 (424)
Q Consensus       285 ~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg-~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~  363 (424)
                      ...+++..++..+++.....+..+..+|+-. .++|++..++-..+..+|+.+ ++.+...+....+.+.          
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~-~~~~~~plv~~~g~~~----------  177 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML-STVLMMPLVNLIGGDN----------  177 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc----------
Confidence            2244556667788898888899999999986 678999999999999988876 5666555444433110          


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          364 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       364 ~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                     ...+|+....+.+.+.+++..+++...
T Consensus       178 ---------------~~~g~~~~~~i~~ii~~i~~~i~~~~~  204 (460)
T PRK11462        178 ---------------KPLGFQGGIAVLSVVAFMMLAFCFFTT  204 (460)
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence                           011388877777777666655554433

>PRK09848 glucuronide transporter; Provisional

Probab=98.15  E-value=0.00014  Score=74.94  Aligned_cols=119  Identities=15%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             HHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-----h--hH
Q 014462          217 LGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-----W--PG  286 (424)
Q Consensus       217 l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-----~--~~  286 (424)
                      ++.++++ .|++...+  +.++..++.++..+..|+++||.++|+.-.|++.+..+...+..+.+++...     .  ..
T Consensus        31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            3445555 79987655  8889999999999999999999977655445554444333333333333221     1  12


Q ss_pred             HHHHHHHHHHHHhhhhHhHHHHHHHHhhCc-chhhHHHHHHHHHHHHHHH
Q 014462          287 EIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSL  335 (424)
Q Consensus       287 ~l~~~~~l~G~~~G~~~~~~~~~~se~fg~-~~~g~~~g~~~~~~~lgs~  335 (424)
                      ..++..++.+++++...++..+...++... ++|.+..++-..+..++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~  160 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV  160 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            234456677888888888777877777644 5677776665554444433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.13  E-value=9.7e-05  Score=75.39  Aligned_cols=129  Identities=19%  Similarity=0.252  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHH
Q 014462          198 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF  275 (424)
Q Consensus       198 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~  275 (424)
                      .+.+..+...|+   +...++.++++.|+|..++  +.++..+..+++.+++|+++||.+++++.     +.+..++.++
T Consensus         9 ~~~f~~f~~~G~---~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~-----l~~~~l~~~~   80 (400)
T PF03825_consen    9 LMYFLYFFAYGA---FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRI-----LALLSLLSAL   80 (400)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH-----HHHHHHHHHH
Confidence            333444444444   3345788999999998876  88899999999999999999999765433     1233333333


Q ss_pred             HHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH
Q 014462          276 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  336 (424)
Q Consensus       276 ~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l  336 (424)
                      ..+... ..+.+.+....++..+++....++.-+++.+.-+  +.+..||-.-+.+++|=.+
T Consensus        81 ~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~  140 (400)
T PF03825_consen   81 ALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIV  140 (400)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHH
Confidence            333322 4456666777777788888888888888888774  3455666555555555554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.07  E-value=0.00011  Score=70.07  Aligned_cols=131  Identities=17%  Similarity=0.133  Sum_probs=90.3

Q ss_pred             hhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH--h
Q 014462          207 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--I  282 (424)
Q Consensus       207 ~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~--~  282 (424)
                      .|..+.+..+-|++-+++|+|.++.  +...-.++..+| +.+|.+.|++|++.      .+.++.+...++..++.  .
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~------~l~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV------VLLIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH------HHHHHHHHHHHHHHHHHHHH
Confidence            3445566667888888899998765  555666777775 88999999998653      33666666666665543  1


Q ss_pred             c------hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          283 G------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       283 ~------~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      .      +.+.+.+...+.|.+.+...+.......+.|| ++||++.|+.-....+++.+|+. +...++
T Consensus        88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~-i~~~~f  155 (250)
T PF06813_consen   88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ-IYSAFF  155 (250)
T ss_pred             hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH-HHHHHc
Confidence            1      23444555555555555555666666778996 68999999999999998888643 444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.06  E-value=0.00016  Score=75.30  Aligned_cols=180  Identities=13%  Similarity=0.081  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHH-HHH-cCCCc--------h----hHHHHHHHHHhhhhhhhhhhhhhhhhh-cc
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQI-CQS-LGYAD--------T----SIYVSMISIWNFLGRVGGGYFSEAIVR-KF  258 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i-~~~-~g~s~--------~----~~~~sl~si~~~~gr~~~G~lsd~~g~-k~  258 (424)
                      +.+|.+.+..++...+.+.+..+...+ .++ ++.++        .    .....+.++.+.+..++--.+..++|+ |+
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~  337 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            467888888888877777665554444 343 43321        1    113334444444444445555555553 22


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHh-ch---------------------hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCc
Q 014462          259 AYPRPVAMAVAQVVMAFALLYYAI-GW---------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGL  316 (424)
Q Consensus       259 ~~~r~~~l~~~~~~~~~~~ll~~~-~~---------------------~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~  316 (424)
                      .      ..+++++.++++....+ .+                     .+..++...++|+..+...++-++++++.-+.
T Consensus       338 ~------~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       338 L------WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence            2      24555555555444321 11                     25667788899999999999999999999984


Q ss_pred             --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHH
Q 014462          317 --KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLC  394 (424)
Q Consensus       317 --~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~  394 (424)
                        ++.|...|+.|.+..+..++ .....|.+.+..+++                              -..++.+.++..
T Consensus       412 ~~~~~G~~mgilN~~I~lpQii-~sl~~g~~~~~~g~~------------------------------~~~~~~~~gv~~  460 (477)
T TIGR01301       412 LGAGQGLSMGVLNLAIVIPQII-VSLGSGPWDQLFGGG------------------------------NLPAFVVGAVAA  460 (477)
T ss_pred             cCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHcCCC------------------------------CeeHHHHHHHHH
Confidence              56699999999999999998 566777766655521                              457888888888


Q ss_pred             HHHHHHHHHHhhhhhH
Q 014462          395 IIAMVMSLIVVHRTKS  410 (424)
Q Consensus       395 ~~~~~l~~~l~~~~~~  410 (424)
                      ++++++++++..|.++
T Consensus       461 ~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       461 FVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHhCCCCCC
Confidence            8888888877766553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.04  E-value=1.5e-05  Score=80.78  Aligned_cols=104  Identities=17%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH----hch----hHHHHHHHHHHHHHhhhhH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IGW----PGEIYVTTVLVGLSYGAHW  303 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~----~~~----~~~l~~~~~l~G~~~G~~~  303 (424)
                      .-....+++.+|+++.||+.||+|||+.+      -..+++|.++-.+..    ..+    ..++....++.|+|.|+=+
T Consensus        89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vY------G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY  162 (538)
T KOG0252|consen   89 VNAAALVGTIFGQLFFGWLGDKFGRKKVY------GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY  162 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhh------hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence            66677899999999999999999999988      333444444443322    222    3567888999999999999


Q ss_pred             hHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          304 AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       304 ~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      +...+++||.--.+.||+..+.+......|... |.+++
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila-G~ivt  200 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILA-GGIVA  200 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEEecchhHhh-ccHHH
Confidence            999999999999999999888877777766653 54433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.00  E-value=6.6e-08  Score=99.32  Aligned_cols=134  Identities=20%  Similarity=0.272  Sum_probs=103.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-c---hhHHHHHHHHHHHHHhhhhHhHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-G---WPGEIYVTTVLVGLSYGAHWAIVP  307 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-~---~~~~l~~~~~l~G~~~G~~~~~~~  307 (424)
                      ..+...++..+|.++.|+++||+|||+.+      .++.+++.++.++... .   +.+.+.++.++.|++.|...+..+
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHhhhcccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            78889999999999999999999999876      5566666666666553 3   467788899999999999999999


Q ss_pred             HHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHH
Q 014462          308 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITC  387 (424)
Q Consensus       308 ~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f  387 (424)
                      .++.|..|+|+||...++...+..+|..+ +..+ +........                            .+.||..+
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~-~~~~-~~~~~~~~~----------------------------~~~Wr~~~  174 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILL-ASLI-GYIVSYYSD----------------------------NWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccc-cccc-ccccccccc----------------------------cccccccc
Confidence            99999999999999999999998888775 4433 322211110                            11289888


Q ss_pred             HHHHHHHHHHHHHH
Q 014462          388 GIMAGLCIIAMVMS  401 (424)
Q Consensus       388 ~i~a~~~~~~~~l~  401 (424)
                      .+.+..+++..+..
T Consensus       175 ~~~~~~~l~~~~~~  188 (451)
T PF00083_consen  175 IFGAIPSLLVLLLR  188 (451)
T ss_pred             cccccccccccccc
Confidence            88887776654444

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.95  E-value=0.00091  Score=66.33  Aligned_cols=124  Identities=15%  Similarity=0.156  Sum_probs=82.3

Q ss_pred             HHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 014462          220 ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL  297 (424)
Q Consensus       220 i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~  297 (424)
                      .+++.|++..++  +...-...+.+..+..|.++||+|||+.-      .+..++.++++++-...+...++++.++.|+
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c------l~~cily~~scl~k~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC------LLFCILYSLSCLTKHSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            456789987765  45555566667778888999999998754      5555666777766566778889999999999


Q ss_pred             HhhhhHhHHHHH-HHHh----hCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Q 014462          298 SYGAHWAIVPAA-ASEL----FGLKSFGALYNFLT-LASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       298 ~~G~~~~~~~~~-~se~----fg~~~~g~~~g~~~-~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +....++..=+. +.|.    ||.+..+..++.+. ..+.+-.++ ++.++-.+.|..+
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~-aGv~a~~l~~~~~  191 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIG-AGVVANVLADWFG  191 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHH-HhHHHHHHHHHhC
Confidence            998887765443 3333    44444555555544 344444443 5555555555544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=6.2e-05  Score=75.14  Aligned_cols=187  Identities=12%  Similarity=0.058  Sum_probs=124.5

Q ss_pred             CCCCCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCCch-hH--HHHHHHHHhhhhhhhhhhhhhhhhh
Q 014462          181 RGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADT-SI--YVSMISIWNFLGRVGGGYFSEAIVR  256 (424)
Q Consensus       181 ~~~~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~-~~--~~sl~si~~~~gr~~~G~lsd~~g~  256 (424)
                      ..++.+++++++++..|....+......+.-..-.-++... +++. ++. ..  ..-..++...+|..+.|.+.||+++
T Consensus       257 ~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~  335 (464)
T KOG3764|consen  257 TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH  335 (464)
T ss_pred             cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCc
Confidence            33456799999999999876655433322222223344433 4454 222 22  4556778899999999999999986


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcc------hhhHHHHHHHHH
Q 014462          257 KFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK------SFGALYNFLTLA  329 (424)
Q Consensus       257 k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~------~~g~~~g~~~~~  329 (424)
                      .++.    ..+.++++..+...... .++...+++.....|++.+...+....+..++...+      .+|..|++...+
T Consensus       336 ~~wl----~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a  411 (464)
T KOG3764|consen  336 LRWL----LSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAA  411 (464)
T ss_pred             hhHH----HHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHH
Confidence            4432    12222222222222222 233445677777777777776666666666665443      478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          330 SPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       330 ~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      ..+|..+ ||.++|.++++.|                                |+|.-.+.+..+++-.-+..+++
T Consensus       412 ~sla~a~-GP~~gg~iv~~iG--------------------------------F~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  412 FSLAYAI-GPTFGGSLVEAIG--------------------------------FEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             HHHhhhc-cccccchheeehh--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998 9999999999888                                99999999999988776665544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.93  E-value=0.00058  Score=73.90  Aligned_cols=71  Identities=15%  Similarity=0.244  Sum_probs=59.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHH-Hhhhhhhhhhhhhhhhhhc
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIVRK  257 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si-~~~~gr~~~G~lsd~~g~k  257 (424)
                      ++++++++.+|...+..++..+...++..++|.++++ +|+++.++  ++.+..+ +..+|.+++|+++||++.+
T Consensus       323 ~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       323 IKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            5569999999999999999988888999999999976 89987655  5555555 5689999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00055  Score=70.59  Aligned_cols=169  Identities=15%  Similarity=0.156  Sum_probs=122.1

Q ss_pred             HHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-----
Q 014462          212 TVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-----  283 (424)
Q Consensus       212 ~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~-----  283 (424)
                      .+..++..++.+ .|.++..+  +..+.-++.++.-|+.|.++||..+|+.--||+.+..+.-+..+..+++...     
T Consensus        30 ~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~  109 (467)
T COG2211          30 IVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT  109 (467)
T ss_pred             HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence            344566677766 89998754  7777889999999999999999887776667766655554444444444332     


Q ss_pred             -hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 014462          284 -WPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  361 (424)
Q Consensus       284 -~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg-~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~  361 (424)
                       .....++...+.+++|.....+..++.+|+-. .++|.+..+.-.....+|+.+ ...+.+.+....+....       
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l-~~~~~~plv~~~g~~~~-------  181 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL-VAVLFPPLVKLFGGGDK-------  181 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcc-------
Confidence             13455677888999999999999999999875 467999999999999999887 56677766666653210       


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       362 ~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                        .+.|+.+-.+++.+..++++.++.-.+
T Consensus       182 ------------------~~g~~~~~~~~~vi~~i~~l~~~~~v~  208 (467)
T COG2211         182 ------------------ALGYQGTALVLGVIGVILLLFCFFNVK  208 (467)
T ss_pred             ------------------hhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                              123888888888877777766655443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.86  E-value=0.00012  Score=75.52  Aligned_cols=177  Identities=18%  Similarity=0.191  Sum_probs=114.9

Q ss_pred             HhhhhHHHHHHH-HHHHHhhhhHHHHHhcHHHHHHHcCCCchhH-HHH-HHHHHhhhhhhhhhhhhhhhhhcccCchhHH
Q 014462          189 QALMKADFLLLF-FSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVS-MISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  265 (424)
Q Consensus       189 ~~l~~~~fwll~-~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~~s-l~si~~~~gr~~~G~lsd~~g~k~~~~r~~~  265 (424)
                      +++.+++..+++ ++.+.+.+.++. .+.|=-.+|+.|..+.-- .++ +--.+-.+.=+..+++.+|+|+-+.+     
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv-~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~-----  439 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLV-FTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM-----  439 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHH-HHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-----
Confidence            345555544433 333333333332 223323457776433211 222 22233344456677999999987766     


Q ss_pred             HHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 014462          266 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSLIFSGVIAS  343 (424)
Q Consensus       266 l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~-~~~lgs~l~~~~l~g  343 (424)
                       .+++....+=++.++. .++|.....=++.|+.++..|+...++++...|++-++++.+++.. .-.+|-.+ |.+|+|
T Consensus       440 -~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~-GslIGG  517 (618)
T KOG3762|consen  440 -YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL-GSLIGG  517 (618)
T ss_pred             -eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch-hhhhhh
Confidence             5555555555555553 5677777778899999999999999999999999999999998765 35666665 777888


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          344 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       344 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      .+..+.+                                -+.+|.+.+..|++.++....+.
T Consensus       518 ~~v~~fg--------------------------------~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  518 FVVERFG--------------------------------ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhheeeh--------------------------------hHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888877                                46778877777777665555444

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.80  E-value=0.00011  Score=74.45  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=109.2

Q ss_pred             CCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCc--hhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCc
Q 014462          184 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYP  261 (424)
Q Consensus       184 ~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~--~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~  261 (424)
                      ..++++.+++++|.++.+++..+.+......+.+-+.+...||+.  +.....+..+.+++|...+|.+.||...-+.. 
T Consensus       256 ~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~-  334 (480)
T KOG2563|consen  256 PKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT-  334 (480)
T ss_pred             HHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH-
Confidence            345777999999999998888777777666666655556678874  44477788899999999999999999643322 


Q ss_pred             hhHHHHHHHHHHHHH-HHHHH-h---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH
Q 014462          262 RPVAMAVAQVVMAFA-LLYYA-I---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  336 (424)
Q Consensus       262 r~~~l~~~~~~~~~~-~ll~~-~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l  336 (424)
                         . .+......++ +.++. .   ...+.++....+.|++.-+..++-.-...|.-.+..=|+..|++++.+++-+.+
T Consensus       335 ---~-~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~  410 (480)
T KOG2563|consen  335 ---T-LVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI  410 (480)
T ss_pred             ---H-HHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH
Confidence               1 1111112222 11111 1   123456667778888877887777777777654555588999999988888877


Q ss_pred             HHHHHHHHHHhhhh
Q 014462          337 FSGVIASGIYDYYA  350 (424)
Q Consensus       337 ~~~~l~g~l~d~~~  350 (424)
                      + ..+.+...+..+
T Consensus       411 ~-~~~~~~~~~~~~  423 (480)
T KOG2563|consen  411 L-VFIMGILAEDLG  423 (480)
T ss_pred             H-HHHHHHHhhccC
Confidence            5 677776555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.79  E-value=0.00074  Score=68.06  Aligned_cols=128  Identities=16%  Similarity=0.086  Sum_probs=88.1

Q ss_pred             HHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHH-------HHHHHh-------ch
Q 014462          221 CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFA-------LLYYAI-------GW  284 (424)
Q Consensus       221 ~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~-------~ll~~~-------~~  284 (424)
                      ..+++.+..-.  ++++..+... .|+..|+.||+.+.-..+.|+-++..+.++.+.+       .+.+..       ..
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            35566665422  4555544444 5999999999998222222332334444443333       222222       11


Q ss_pred             -h--HHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          285 -P--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       285 -~--~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                       .  ....+...++|+|.+...+..-+.++|.-++++|++..+++....-+|.++ +..+.|.+.|.+.
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv-~ai~~g~lL~~~s  153 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIV-SAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccccC
Confidence             1  234556788899999999999999999999999999999999999999998 8999998887765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.77  E-value=0.0023  Score=59.75  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             hcHHHHHHHcCCCc----hhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hc--hhHH
Q 014462          215 DNLGQICQSLGYAD----TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IG--WPGE  287 (424)
Q Consensus       215 ~~l~~i~~~~g~s~----~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~--~~~~  287 (424)
                      ...+.+..+.+.+.    .....+...+...++.+..|.++||+|||+..      ..+.....++.++.. ..  ....
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   96 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL------IIGLLLFLLGTLLLALAPNVGLAL   96 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH------HHHHHHHHHHHHHHHhCccchHHH
Confidence            34556666665554    23477888888888889999999999887322      222222223322222 22  2456


Q ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHhhCc-chhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 014462          288 IYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTL-ASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       288 l~~~~~l~G~~~G~~~~~~~~~~se~fg~-~~~g~~~g~~~~-~~~lgs~l~~~~l~g~l~d~  348 (424)
                      +.+.....|++.|...+...+++++.++. ++++...+.... ...+|..+ ++.+.+.+.+.
T Consensus        97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  158 (338)
T COG0477          97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLAL-GPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            66677778999999999999999999987 678999998888 46777776 78777777766

>PRK03612 spermidine synthase; Provisional

Probab=97.64  E-value=0.0058  Score=64.56  Aligned_cols=144  Identities=19%  Similarity=0.221  Sum_probs=74.1

Q ss_pred             HHHHhhhhHHHHHhcHHHHHH-HcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 014462          202 SLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  278 (424)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~l  278 (424)
                      ..|+..++++.+-..+..++. -+|.+..++  +++.+..+..+|..++|++.++..++...   +-+.++++......+
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~---~e~~i~l~~~~~~~l   98 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA---VELLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHH
Confidence            333444455554433333333 357665433  77777788888888877765322221110   000111111111111


Q ss_pred             HHH-hc----hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 014462          279 YYA-IG----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS-GIYDYYA  350 (424)
Q Consensus       279 l~~-~~----~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g-~l~d~~~  350 (424)
                      +.. ..    ....++...++.++..|+..++..-+..+.. .++.|...|-++....+|+++ |..+.| .++...|
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~-G~l~~~~vLlp~lG  174 (521)
T PRK03612         99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALV-GGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHH-HHHHHHHHHHHhcc
Confidence            111 11    1122344556678888888776666555433 234566677777778888886 788888 4455565

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.60  E-value=6.1e-05  Score=72.04  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHhcHH-HHHHHcCCCc--hh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHH
Q 014462          193 KADFLLLFFSLVLASGSGLTVIDNLG-QICQSLGYAD--TS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  267 (424)
Q Consensus       193 ~~~fwll~~~~~~~~~~~~~~~~~l~-~i~~~~g~s~--~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~  267 (424)
                      .++|..+.++.+.+.++.+.+.+--. |+.-.++.+.  ++  .+-+.+|--|.+-...+|++.||.-.-|..     -.
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~g-----ti  114 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLG-----TI  114 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHH-----HH
Confidence            44667777777777777766643211 2222233332  22  277888899999999999999987432221     12


Q ss_pred             HHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          268 VAQVVMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       268 ~~~~~~~~~~ll~~~----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      +.+++..++++.++.    +..|.+..+.++.|+|--........++..+|.-|+.+..+|+......+|+.+ +-.+.+
T Consensus       115 i~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv-Nf~lm~  193 (459)
T KOG4686|consen  115 ILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV-NFLLMP  193 (459)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee-eeeecH
Confidence            334455667776652    345778889999999876666777889999999999999999999999999998 888899


Q ss_pred             HHHhhhh
Q 014462          344 GIYDYYA  350 (424)
Q Consensus       344 ~l~d~~~  350 (424)
                      ++||.-+
T Consensus       194 ~ly~~~~  200 (459)
T KOG4686|consen  194 FLYDTMG  200 (459)
T ss_pred             HHHHHHH
Confidence            9999876

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.58  E-value=0.0006  Score=70.74  Aligned_cols=131  Identities=14%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH--HhhhhHhHHHHHHHH
Q 014462          235 MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL--SYGAHWAIVPAAASE  312 (424)
Q Consensus       235 l~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~--~~G~~~~~~~~~~se  312 (424)
                      ..++..++-.+..|.++|++|||...      .+......+..++..+.. +++++   +.|+  ++++.++...+++++
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L------~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vad  139 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVL------LLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVAD  139 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhH------HHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheee
Confidence            34677888899999999999998654      333333333333333333 22222   4444  356777888899999


Q ss_pred             hhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHH
Q 014462          313 LFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAG  392 (424)
Q Consensus       313 ~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~  392 (424)
                      .-..++|...+|+++....++..+ +|.+.+.+....+                                +..+|.+.++
T Consensus       140 is~~~~R~~~~gll~~~~~~~~~~-~p~~~~~~~~~~~--------------------------------~a~~f~ia~~  186 (463)
T KOG2816|consen  140 ISSEEERSSSIGLLSGTFGAGLVI-GPALGGYLVKFLG--------------------------------IALVFLIAAA  186 (463)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC--------------------------------chHHHHHHHH
Confidence            999999999999999988888887 8999998877765                                8889999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 014462          393 LCIIAMVMSLIVVHRT  408 (424)
Q Consensus       393 ~~~~~~~l~~~l~~~~  408 (424)
                      ..+++.+-..+..+++
T Consensus       187 ~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  187 SGILSLLYMLLFLPES  202 (463)
T ss_pred             HHHHHHHHHhhccccc
Confidence            8888877776666554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.54  E-value=0.0021  Score=66.33  Aligned_cols=155  Identities=20%  Similarity=0.216  Sum_probs=102.3

Q ss_pred             HHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-----chhHHHHH
Q 014462          218 GQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-----GWPGEIYV  290 (424)
Q Consensus       218 ~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~-----~~~~~l~~  290 (424)
                      +.+-+++|.++++.  +.++.++... ..++.|.++|.+-- .++.|+..+.++.++.+++.+.++.     .+.....+
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi-~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPI-FGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccc-cCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            34446699998754  5555555444 48999999998831 1112222344555444333333331     12334455


Q ss_pred             HHHHHHHHhhhhHhHHHHHHHHhhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcc
Q 014462          291 TTVLVGLSYGAHWAIVPAAASELFGL--KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  368 (424)
Q Consensus       291 ~~~l~G~~~G~~~~~~~~~~se~fg~--~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~  368 (424)
                      ..++..+|+...-.+.-+.+.|.-..  +.+|...+.......+|+++ +..+.|.+.+..+                  
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv-~~~l~G~l~~~~~------------------  152 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLV-GSLLSGPLLDSFG------------------  152 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCC------------------
Confidence            66677788888887888888888632  23788899999999999997 8889999888766                  


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          369 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  407 (424)
Q Consensus       369 ~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~  407 (424)
                                    ++..|.+.+.+.++..+.++.+..+
T Consensus       153 --------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  153 --------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             --------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence                          5666777777777776666666554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.45  E-value=0.005  Score=54.37  Aligned_cols=107  Identities=7%  Similarity=0.062  Sum_probs=77.0

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q 014462          233 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASE  312 (424)
Q Consensus       233 ~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se  312 (424)
                      .++......+..+.++.+.+++|.|+.+      .++.+..++-...+...+.+.++.+.++.|++.+..|+....++.+
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm------~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~  116 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSM------ILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTS  116 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence            3344444555556677888999988644      5555554433333334556778999999999999999999999999


Q ss_pred             hhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          313 LFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       313 ~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      .-.++++++..++.......+.++ |..+.-.++
T Consensus       117 ~s~~~~~~~~~~ifw~i~~~s~i~-G~~~~~~~~  149 (156)
T PF05978_consen  117 YSTEETIGRNTGIFWAIFQSSLIF-GNLFLFFIF  149 (156)
T ss_pred             cCCHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            998889999999988888876665 655444443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.42  E-value=0.034  Score=58.34  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=85.4

Q ss_pred             CCCc-hhHHHHHHHHHhhhhhhhhhhhhhhhhhcc---cCchhHHHHHHHHHHHHHHHHHHh----------chhHHHHH
Q 014462          225 GYAD-TSIYVSMISIWNFLGRVGGGYFSEAIVRKF---AYPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYV  290 (424)
Q Consensus       225 g~s~-~~~~~sl~si~~~~gr~~~G~lsd~~g~k~---~~~r~~~l~~~~~~~~~~~ll~~~----------~~~~~l~~  290 (424)
                      |++- ++++.++..++-.+..|+.+++-.+..+|+   ..|++  +.+++++++++++.+..          .+++++.+
T Consensus       305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K--fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~  382 (493)
T PRK15462        305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK--FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVL  382 (493)
T ss_pred             ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHH
Confidence            4443 455889999999999999888877775432   23333  35666777777655421          23567788


Q ss_pred             HHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014462          291 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAGSLIFSGVIASG  344 (424)
Q Consensus       291 ~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~-~lgs~l~~~~l~g~  344 (424)
                      ..++.++|--...++..+.++++.|.+.+|...|...+.. .+|..+ +..+++.
T Consensus       383 ~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~-~g~~~~~  436 (493)
T PRK15462        383 GLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL-AGVIADQ  436 (493)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            8888999998999999999999999999999999987643 566665 5555553

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.26  E-value=0.007  Score=60.31  Aligned_cols=141  Identities=13%  Similarity=0.095  Sum_probs=94.1

Q ss_pred             cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhh
Q 014462          224 LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYG  300 (424)
Q Consensus       224 ~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G  300 (424)
                      -|.+..+.  ++.-...+..+|...+|.++|++|||+..      .+...+..+...+-. ..+...+++...+.|+|.|
T Consensus       108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f------~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g  181 (528)
T KOG0253|consen  108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGF------NLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG  181 (528)
T ss_pred             hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhh------hhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence            35444332  66666778889999999999999999876      333333333333322 3445678889999999999


Q ss_pred             hhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCC
Q 014462          301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGS  380 (424)
Q Consensus       301 ~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~  380 (424)
                      + .+...++-.|.-|..+++.-.=.. ....+|... ...++=.+..+.|                              
T Consensus       182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~-ea~law~vm~~~g------------------------------  228 (528)
T KOG0253|consen  182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVF-EALLAWGVMSNFG------------------------------  228 (528)
T ss_pred             C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHH-HHHHHHHHHHhhh------------------------------
Confidence            9 677777778888888877655444 777788775 5554444455555                              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          381 ICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       381 ~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                        ||+-+........+.+....++.
T Consensus       229 --wr~~l~~~~~pl~~~a~f~~w~~  251 (528)
T KOG0253|consen  229 --WRYLLFTSSTPLMFAARFLVWVY  251 (528)
T ss_pred             --HHHHHHHHHhHHHHHHHHHhhcc
Confidence              88877766655555555555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.03  E-value=0.008  Score=62.36  Aligned_cols=185  Identities=17%  Similarity=0.140  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHc--CCCch--hHHHHHHHHHhhhhhhhhhhhhhhhhh-cccCchhHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSL--GYADT--SIYVSMISIWNFLGRVGGGYFSEAIVR-KFAYPRPVAMAVAQV  271 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~--g~s~~--~~~~sl~si~~~~gr~~~G~lsd~~g~-k~~~~r~~~l~~~~~  271 (424)
                      |+..+..+........+..-+-++.+++  +-+.+  .+.++..+++.+++.+..|+-+.|.+. |+.+      .++.+
T Consensus        37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl------i~s~i  110 (488)
T KOG2325|consen   37 YLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL------IVSFL  110 (488)
T ss_pred             HHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH------HHHHH
Confidence            4444444433322222222334566664  33333  348888999999999999999998885 3333      56778


Q ss_pred             HHHHHHHHHH-h----c-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          272 VMAFALLYYA-I----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       272 ~~~~~~ll~~-~----~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      ++++++++++ .    . ..+.+.++.++.|+|.|... ..=.++++.--.++|-+++...+.+..+|..+ ||.+...+
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il-Gp~~q~~f  188 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIIL-GPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHH-hHHHHHHH
Confidence            8888888773 1    2 34578889999999987764 66777877666788888888888877787776 77554332


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          346 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  408 (424)
Q Consensus       346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~  408 (424)
                       .--+.+.-    .    +.+.          .--+=|..+=++++.++++.+++..+..++.
T Consensus       189 -~~Lg~~G~----~----i~~~----------~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  189 -TPLGEKGF----M----ILPG----------LIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             -hhhcCCce----E----EcCc----------ceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence             22221100    0    0000          0011278888899999998887777666544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.96  E-value=0.001  Score=67.85  Aligned_cols=159  Identities=17%  Similarity=0.113  Sum_probs=93.6

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHH----HcCCCc--hhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ----SLGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~----~~g~s~--~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +.+++.+.+..+.+....+..-++..|.|.+.+    -.|.+.  +.++..+...++.+|.+.+|.++|++.++.  ||-
T Consensus       240 l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~--~~~  317 (493)
T KOG1330|consen  240 LAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIF--PNS  317 (493)
T ss_pred             HHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhc--ccc
Confidence            444454444444444444433344555555542    235443  234888999999999999999999987633  221


Q ss_pred             HHHHHHH------HHHHHHHHHHH-hchhHHHH--HHHHHHHHH-hhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHH
Q 014462          264 VAMAVAQ------VVMAFALLYYA-IGWPGEIY--VTTVLVGLS-YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG  333 (424)
Q Consensus       264 ~~l~~~~------~~~~~~~ll~~-~~~~~~l~--~~~~l~G~~-~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lg  333 (424)
                      .-..+.+      +..++.++.+. ......++  +..+++|.. .-..|++..-+..|+.|+++|.+++.+-.+...+-
T Consensus       318 ~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~f  397 (493)
T KOG1330|consen  318 GTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIF  397 (493)
T ss_pred             cchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHh
Confidence            1111111      22222222222 11122233  344444543 34566778888899999999999999988766554


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 014462          334 SLIFSGVIASGIYDYYA  350 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~  350 (424)
                      +-.-+|++.|.+.|+--
T Consensus       398 gd~~~p~ivGilsd~l~  414 (493)
T KOG1330|consen  398 GDAASPYIVGILSDKLR  414 (493)
T ss_pred             ccCCCcceehhHHHHhh
Confidence            44436779999998853

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.91  E-value=0.0051  Score=61.93  Aligned_cols=105  Identities=16%  Similarity=0.237  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHH--h-ch-------hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcc---hhhHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYA--I-GW-------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK---SFGALYNFLTLASPAG  333 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~--~-~~-------~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~---~~g~~~g~~~~~~~lg  333 (424)
                      .++.+++.+|++++.  . ..       ...++++..++++|.|+.=+...+...+.|..+   ++...++....+..+|
T Consensus         5 ~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G   84 (372)
T PF00854_consen    5 LLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIG   84 (372)
T ss_dssp             HHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhh
Confidence            566777778877732  2 11       246899999999999999999999999999765   4778899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014462          334 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  404 (424)
Q Consensus       334 s~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l  404 (424)
                      +.+ +..+.+++-++.+                                |...|.+.++..+++.+..+.-
T Consensus        85 ~~~-~~~~~~~i~~~~~--------------------------------~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   85 SLF-SPTLVPYIQQNYG--------------------------------WFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHH-HHHCCCHHHHCS---------------------------------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hHh-hcccchhhccccc--------------------------------hhhhhhHHHHHHHHHHHHHHhC
Confidence            997 8888888887766                                9999999999888877655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.87  E-value=0.078  Score=55.47  Aligned_cols=144  Identities=11%  Similarity=0.001  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh--chhH-HHHHHHHHHHHHhhhhHhHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI--GWPG-EIYVTTVLVGLSYGAHWAIVPA  308 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~--~~~~-~l~~~~~l~G~~~G~~~~~~~~  308 (424)
                      ..++..+..++-.|..|.++|+-++||.+     +.+...+.+++...+.+  ...+ ...+..++.-++++.......+
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~-----l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRF-----LLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHH-----HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677788888999999999999888754     22222222233333322  2223 2333344445688888899999


Q ss_pred             HHHHhhCcchh--------------------------hHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhcc
Q 014462          309 AASELFGLKSF--------------------------GALYNFLTLASPAGSLIFSGVIAS-GIYDYYAEKQAGLLWKYN  361 (424)
Q Consensus       309 ~~se~fg~~~~--------------------------g~~~g~~~~~~~lgs~l~~~~l~g-~l~d~~~~~~~~~~~~~~  361 (424)
                      +..++-..++.                          ++..|.-...+.+|+.+.  .+.. .+....+..         
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~--l~i~l~~~~~~~~~---------  218 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVA--LLISLLLVISPGST---------  218 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHH--HHHHHHHHHcCCCc---------
Confidence            99999998888                          899999888899998872  3333 222222100         


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       362 ~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                                     =.+.+..|.++.+.++-.++-.+..++..+
T Consensus       219 ---------------~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~  248 (477)
T PF11700_consen  219 ---------------ASNTWAIRVAFLIVALWWLVFSIPLFLWLP  248 (477)
T ss_pred             ---------------cccchhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence                           001123789998888877665555544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.70  E-value=0.0066  Score=46.95  Aligned_cols=58  Identities=12%  Similarity=0.130  Sum_probs=45.8

Q ss_pred             HHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          203 LVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       203 ~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      +|+..++.-.+...++.+.++.|++..++  +.++..+..+++.+++|+++||+++++..
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            33344444455667888889999998776  88888899999999999999999987654

>TIGR01272 gluP glucose/galactose transporter

Probab=96.62  E-value=0.017  Score=56.85  Aligned_cols=64  Identities=5%  Similarity=-0.052  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          284 WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       284 ~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      +...+.+..++.|.|.+...+..+++++++.+.|+.++..|+......+|+.+ +|.+++.+..+
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~-gP~i~~~~i~~   72 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTV-APLFGGSLILS   72 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHH-HHHHHHHHHhc
Confidence            45667889999999999999999999999999999999999999999999997 99999977744

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.62  E-value=0.074  Score=55.00  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH-HHHHHHHHHHHHHHHh----------chhHHHHHHHHHHHHHhh
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM-AVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYG  300 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l-~~~~~~~~~~~ll~~~----------~~~~~l~~~~~l~G~~~G  300 (424)
                      ...++.++.++||.+..+. ..-.+|   +|.++. .++=++..-.+++...          .+.+..++..++.|+.+|
T Consensus       312 ~~~~fNvgD~vGR~~~~~~-~~p~~~---~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       312 CFLLFNLFDWLGRSLTSKF-MWPDED---SRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHhhhhhee-EeeCCC---ccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            7778899999999977654 111122   111111 1111222111112111          234556678999999999


Q ss_pred             hhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 014462          301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       301 ~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                      -..+....+..+....+++-.+-+++..+..+|-.+ |.
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~-Gs  425 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLAL-GA  425 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            999999999999998888888888888777777665 44

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.38  E-value=0.16  Score=51.76  Aligned_cols=137  Identities=12%  Similarity=0.125  Sum_probs=82.7

Q ss_pred             HHHhhhhHHH--HHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCC-ch----hHHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 014462          187 LPQALMKADF--LLLFFSLVLASGSGLTVIDNLGQIC-QSLGYA-DT----SIYVSMISIWNFLGRVGGGYFSEAIVRKF  258 (424)
Q Consensus       187 ~~~~l~~~~f--wll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s-~~----~~~~sl~si~~~~gr~~~G~lsd~~g~k~  258 (424)
                      +++..+++..  |.+++++  . .+++..+.|.-|.+ ++..-+ ..    ...-+...+.++++.+..|++..++.+-.
T Consensus       240 ~~~~y~~~~ll~WSlWWa~--a-tcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~  316 (412)
T PF01770_consen  240 FKSCYSNPRLLLWSLWWAF--A-TCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG  316 (412)
T ss_pred             HHHHhcCchHHHHHHHHHH--H-HhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH
Confidence            4445555543  5555443  2 23333333444443 444111 11    23556666777888888898855554322


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHH
Q 014462          259 AYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS  330 (424)
Q Consensus       259 ~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~  330 (424)
                          .+.+.+..++.+..++++. ..+.+..|++.++.+..+-...++...-++.....+.+|..+|+.++..
T Consensus       317 ----~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  317 ----ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHH
Confidence                1233444445454444444 4567788999999999888888888888888887888899888755544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.36  E-value=0.00059  Score=72.29  Aligned_cols=166  Identities=14%  Similarity=0.076  Sum_probs=0.0

Q ss_pred             CCCHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHH-Hhhhhhhhhhhhhhhhhhcc-
Q 014462          184 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIVRKF-  258 (424)
Q Consensus       184 ~~t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si-~~~~gr~~~G~lsd~~g~k~-  258 (424)
                      ..+++++++|+.|....++..+......++...+|.+.|. ++.+++.+  ++....+ +.++|.+++|++..|+.-+. 
T Consensus       295 ~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~  374 (539)
T PF03137_consen  295 PKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSAR  374 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHH
Confidence            3467889999999998888888877777888889999876 78876544  4444444 67789999999998885332 


Q ss_pred             cCchhHHHHHHHHHHHH--HHHHHHh-----------c---------------------------h-----------hHH
Q 014462          259 AYPRPVAMAVAQVVMAF--ALLYYAI-----------G---------------------------W-----------PGE  287 (424)
Q Consensus       259 ~~~r~~~l~~~~~~~~~--~~ll~~~-----------~---------------------------~-----------~~~  287 (424)
                      ...| +.+....+.+..  ..+++.-           .                           .           ...
T Consensus       375 ~~~~-~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~  453 (539)
T PF03137_consen  375 GAAK-FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIP  453 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHH
Confidence            1111 111111111111  0111100           0                           0           001


Q ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          288 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       288 l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +.+..++.-+..+....+...++-...+.++++.+.|+..+...+-+.+=+|+++|.+.|+.-
T Consensus       454 Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC  516 (539)
T PF03137_consen  454 FLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC  516 (539)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence            112222223344455556666677888899999999999988777666679999999999865

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.22  E-value=0.21  Score=50.23  Aligned_cols=123  Identities=11%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Q 014462          222 QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLS  298 (424)
Q Consensus       222 ~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~  298 (424)
                      +.+|+++.+.  +.+..++.+.+-...-....|+...    +....+...+.++.-..+++. ...+..++.++.+..++
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~----~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~  365 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG----NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS  365 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhcccccccccc----chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            4478887654  5566666666555554444444431    111122333333333333333 34567889999999999


Q ss_pred             hhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014462          299 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  349 (424)
Q Consensus       299 ~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~  349 (424)
                      .....+....++....|..++|+..|+....+.++-++ ||.+.|.+....
T Consensus       366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRai-GPlv~g~i~~Ws  415 (451)
T KOG2615|consen  366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAI-GPLVSGVIFSWS  415 (451)
T ss_pred             HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHh-hhhhhheeEEEe
Confidence            88888889999999999999999999999999999998 999998766543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.19  E-value=0.061  Score=55.01  Aligned_cols=110  Identities=5%  Similarity=-0.077  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH--Hhch-----hH--HHHHHHHHHHHHhhh
Q 014462          231 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY--AIGW-----PG--EIYVTTVLVGLSYGA  301 (424)
Q Consensus       231 ~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~--~~~~-----~~--~l~~~~~l~G~~~G~  301 (424)
                      +...++.+.+..-.+.+-|+.|++|-|...      .++..+.+++.++=  +..+     .+  ....+..+.++..-.
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~------llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F  156 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTAL------LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF  156 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHH------HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence            366667777888888889999999977433      67777888877652  2211     12  334566666666555


Q ss_pred             hHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          302 HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       302 ~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                      ...+-.-+..-+||+++|+.+..+..+++++|..+ +-.+.-.+..
T Consensus       157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav-g~llppilV~  201 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV-GFLLPPILVP  201 (480)
T ss_pred             hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHH-HhhccceecC
Confidence            55555567788999999999999999999999886 5544444443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.03  E-value=0.055  Score=54.90  Aligned_cols=155  Identities=9%  Similarity=-0.052  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH--hc-h-hHHHHHHHHHHHHHhhhhHhHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--IG-W-PGEIYVTTVLVGLSYGAHWAIVP  307 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~--~~-~-~~~l~~~~~l~G~~~G~~~~~~~  307 (424)
                      ..++..+..++-.|.-|.++|+.|+||..     +.+...+..+...++.  .. + .+...+..++..+++........
T Consensus        63 ~~aia~llia~LapiLG~iaD~~g~Rk~~-----~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          63 ASAIAGLLIALLAPILGTIADYPGPRKKF-----FGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCcchH-----HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            55566677777888899999999988754     2232333333333332  22 2 33456677778888888889999


Q ss_pred             HHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHH
Q 014462          308 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITC  387 (424)
Q Consensus       308 ~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f  387 (424)
                      +...++..+++.+...|+......+||.+  +.+.....-..+..            .+++..-- .+.-.-.+--|.++
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i--~li~~~~~~~~~~~------------~~~~~~l~-~l~~~~~~~~ri~~  202 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVI--LLIFVVLGFALGQQ------------TGITIILL-GLPPADGEDVRITG  202 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchH--HHHHHHHHHhcccc------------cceeEEee-ccCccccccchhHH
Confidence            99999999988888888888888888886  34443211111100            00000000 00000011268899


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 014462          388 GIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       388 ~i~a~~~~~~~~l~~~l~~  406 (424)
                      .+.++-+++-.+-.++..+
T Consensus       203 ~l~A~W~li~~iPm~~~v~  221 (438)
T COG2270         203 LLAALWWLLFALPMILNVH  221 (438)
T ss_pred             HHHHHHHHHHHhHHHhccc
Confidence            9999888887776665543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.86  E-value=0.44  Score=49.64  Aligned_cols=119  Identities=16%  Similarity=0.227  Sum_probs=90.7

Q ss_pred             cCCCchhH--HHHHHHHHhhhhhhhhh-hhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHh
Q 014462          224 LGYADTSI--YVSMISIWNFLGRVGGG-YFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSY  299 (424)
Q Consensus       224 ~g~s~~~~--~~sl~si~~~~gr~~~G-~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~-~~~l~~~~~l~G~~~  299 (424)
                      +|++..+.  +.++.++.+.++.++.. .+.-.++.|+.+      ..++....+..+++++.. .|.++...++. ...
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i------~lGl~~~~~~~~~~af~~~~w~~~~~~v~~-~~~  344 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLI------SLGLLSEFLQLLLFAFATETWMMFAAGVVV-ALA  344 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh------hHHHHHHHHHHHHHHHhccchhhhHHHHHH-Hhh
Confidence            67776643  77777777887777766 676677766533      677788888888888665 44455555444 445


Q ss_pred             hhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          300 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       300 G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      +...+..-+.++.+.+.++.|+++++......+.+.+ +|.+.+.+|..+.
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~-~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVV-SPALYGNIFALTL  394 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhh-hHHHHHHHHHHHH
Confidence            6667788889999999999999999999999999997 8999998887665

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.76  E-value=2.7  Score=42.86  Aligned_cols=101  Identities=21%  Similarity=0.219  Sum_probs=71.4

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHhhhhHhHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IGWPGEIYVTTVLVGLSYGAHWAIVP  307 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~----~~~~~~l~~~~~l~G~~~G~~~~~~~  307 (424)
                      +..++.+|-+++|--.-++  |+      +|.+.+.+.+.+..+..++-+    ..+.+.+.+..+..|+..|+.+.-..
T Consensus       286 Y~~~YQ~GVFISRSS~~~~--ri------r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF  357 (402)
T PF02487_consen  286 YQLLYQLGVFISRSSLPFF--RI------RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF  357 (402)
T ss_pred             HHHHHHHHHhhhhcceeee--eh------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            7778888888888765443  22      233444555544433322211    23455666778888999999998888


Q ss_pred             HHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014462          308 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       308 ~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                      ..++|-.++++|-.+.|+...+-++|..+ +..+
T Consensus       358 ~~I~~~~~~~~REFslg~vsvsds~GI~l-Agll  390 (402)
T PF02487_consen  358 YRISEEVPPEDREFSLGAVSVSDSLGILL-AGLL  390 (402)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence            89999999999999999999999988876 5543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=1.5  Score=45.54  Aligned_cols=49  Identities=8%  Similarity=0.112  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH
Q 014462          287 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  336 (424)
Q Consensus       287 ~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l  336 (424)
                      ...+..++.|++.....+..+.++...+ ++++..+.++.-.-..+++.+
T Consensus       355 ~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  355 LALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence            4456778889999999999999999999 788888888877777776654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.24  E-value=1.7  Score=45.37  Aligned_cols=53  Identities=11%  Similarity=0.117  Sum_probs=42.7

Q ss_pred             HHHHHhhhhHh-HHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014462          294 LVGLSYGAHWA-IVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  347 (424)
Q Consensus       294 l~G~~~G~~~~-~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d  347 (424)
                      ...+-.....+ +.++.+.|++..++-.+.|++..++.++|.++ |+.+..++.+
T Consensus       137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~-sg~~~~~~~~  190 (472)
T TIGR00769       137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIF-SGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            33333344455 78899999999999999999999999999997 8888887664

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.94  E-value=1.2  Score=45.64  Aligned_cols=149  Identities=9%  Similarity=0.068  Sum_probs=94.5

Q ss_pred             cCCCchhH---HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHh
Q 014462          224 LGYADTSI---YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL-YYAIGWPGEIYVTTVLVGLSY  299 (424)
Q Consensus       224 ~g~s~~~~---~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~l-l~~~~~~~~l~~~~~l~G~~~  299 (424)
                      .|++..+.   +.-...=.....-+....+.|.++.|..+      .+..+...+... ++...+...+-+.-+..|+++
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpvi------il~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~  108 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVI------ILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT  108 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence            68876654   22222222334556688899999988533      222222222222 233456667777777777776


Q ss_pred             hhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccC
Q 014462          300 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLG  379 (424)
Q Consensus       300 G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g  379 (424)
                      .+- ...++++-...+++++-++.+....+.-+|..+ |..++-.+....+.                            
T Consensus       109 a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~-s~~lgQllvs~~~~----------------------------  158 (412)
T PF01770_consen  109 AAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFI-SSLLGQLLVSFGGV----------------------------  158 (412)
T ss_pred             HHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC----------------------------
Confidence            654 356677777778889999998888888888775 55444444443320                            


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          380 SICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       380 ~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                        .|...+.+..+...+++++++++...+|.
T Consensus       159 --sy~~L~~isl~~~~~a~~~~~fLP~~~~S  187 (412)
T PF01770_consen  159 --SYFQLNYISLASVSLALLIALFLPMPKRS  187 (412)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence              28888888888888888888887765544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.66  E-value=6.6  Score=41.00  Aligned_cols=118  Identities=13%  Similarity=0.078  Sum_probs=85.6

Q ss_pred             CCCc-hhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchh-HHHHHHHHHHHHHHHHHHh-----------chhHHHHHH
Q 014462          225 GYAD-TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP-VAMAVAQVVMAFALLYYAI-----------GWPGEIYVT  291 (424)
Q Consensus       225 g~s~-~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~-~~l~~~~~~~~~~~ll~~~-----------~~~~~l~~~  291 (424)
                      |++- .+.+-++.+++-.+..++..++--+.+++++-|++ .-+.+++.+++.+++++..           .+.++++..
T Consensus       321 g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~  400 (498)
T COG3104         321 GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLS  400 (498)
T ss_pred             ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHH
Confidence            4443 34588899999999888888888887766443322 3345566666666655421           225678888


Q ss_pred             HHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          292 TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       292 ~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      .++.++|-=...++-.+.+..+-|++-.+...+...+....|..+ +..+++
T Consensus       401 y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l-~g~va~  451 (498)
T COG3104         401 YVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL-GGQVAG  451 (498)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-hceecc
Confidence            999999988888889999999999887788888877777777776 666655

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.90  E-value=0.97  Score=46.64  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=76.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-h----------chhHHHHHHHHHHHHHhh
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-I----------GWPGEIYVTTVLVGLSYG  300 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~----------~~~~~l~~~~~l~G~~~G  300 (424)
                      +.....+.+.++.+++.++..++.+++.+ |+++ ....++.++..+.-. .          .+.+....-.++..+..+
T Consensus       256 f~~~~~~vg~~~~l~g~~~y~~~~~~~~~-R~~~-~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~  333 (433)
T PF03092_consen  256 FYGTLSIVGSIASLLGILLYRKYFSNWSW-RRIF-VVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGM  333 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHH-HHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHH
Confidence            44444466666667777777777776655 3332 222333333322210 0          111223345677778888


Q ss_pred             hhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          301 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       301 ~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      ..+-+....++++-|+..=|+.|+++....++|+.+ +..+...+.+..+
T Consensus       334 i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~-s~~lg~~l~~~~~  382 (433)
T PF03092_consen  334 IAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSV-SSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            888888899999999999999999999999999997 8887777777665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.50  E-value=0.45  Score=49.61  Aligned_cols=86  Identities=10%  Similarity=0.262  Sum_probs=66.6

Q ss_pred             HHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCC
Q 014462          292 TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRD  371 (424)
Q Consensus       292 ~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  371 (424)
                      .++.|.++-.......+.-+++.|+++.++..+++.....++..+ +|.+...++...|                     
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~-~~~~~t~~~~~~g---------------------  452 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVV-GPIFSTAIFTLSG---------------------  452 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhh-hHHHHhhhHHhcC---------------------
Confidence            344566666666778899999999999999999999999999997 8998889888877                     


Q ss_pred             CCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          372 QETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       372 ~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                                 +++.+.+.++..+++..+..++.+|-++
T Consensus       453 -----------~~~v~~~~~~~~l~~~~l~~~~~~r~~~  480 (488)
T KOG2325|consen  453 -----------PRPVWIILLCLLLVVAALWIVFLKRLVP  480 (488)
T ss_pred             -----------ccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                       7777777777666665555555444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.56  E-value=0.34  Score=50.19  Aligned_cols=101  Identities=11%  Similarity=0.095  Sum_probs=79.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q 014462          233 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASE  312 (424)
Q Consensus       233 ~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se  312 (424)
                      .++......+..+.++.+.|+++.|..+      .++......-.+.+...+.+.+|+..++.|+|.+..|+-.-.+.+|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~l------v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~  129 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWAL------VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTS  129 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHH------HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhh
Confidence            5566666677788888899999988544      5655555555555556778889999999999999999999999999


Q ss_pred             hhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          313 LFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       313 ~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                      ...++...++.++.......+.++ |..
T Consensus       130 ~st~~tie~Nisi~Wai~~~~li~-Ggi  156 (461)
T KOG3098|consen  130 NSTRETIERNISIFWAIGQSSLII-GGI  156 (461)
T ss_pred             cCChhhHHHHHHHHHHHHHHHHHh-hhH
Confidence            999999999998887777776665 443

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.49  E-value=1  Score=47.03  Aligned_cols=95  Identities=14%  Similarity=0.116  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  310 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~  310 (424)
                      .-++..+.+++..+..|++-.++.+ ...   +.+.+..++.+..++++. ..+.+..|++.++++..|....++...-+
T Consensus       303 veA~~tllga~~a~~ag~~~~~w~~-~~~---l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       303 VDAASTLLGAITSFIAGFVNIRWAR-WSK---LLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCchh-hHH---HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666777888888544421 111   233444444444444444 45678899999999999999999999999


Q ss_pred             HHhhCcchhhHHHHHHHHHH
Q 014462          311 SELFGLKSFGALYNFLTLAS  330 (424)
Q Consensus       311 se~fg~~~~g~~~g~~~~~~  330 (424)
                      +.....+.+|..+|+.++..
T Consensus       379 A~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             HHHhcccceEEEEecHHHHH
Confidence            99888888899999866544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.39  E-value=15  Score=37.95  Aligned_cols=53  Identities=11%  Similarity=0.170  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014462          333 GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  412 (424)
Q Consensus       333 gs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~~  412 (424)
                      .-+ ++|.+.|.+.+..+                                +..+..+.++.++++..+-.++..+..+..
T Consensus       161 ckl-laPl~vG~l~t~~s--------------------------------~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~  207 (432)
T PF06963_consen  161 CKL-LAPLFVGLLMTFAS--------------------------------PVIAAIFIAGWNLASVFVEYFLLARVYNSV  207 (432)
T ss_pred             HHH-HHHHHHHHHhhccC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            444 59999999988766                                778889999999999988888776654444


Q ss_pred             HHHhhh
Q 014462          413 AQLYGN  418 (424)
Q Consensus       413 ~~~~~~  418 (424)
                      +++..+
T Consensus       208 P~L~~~  213 (432)
T PF06963_consen  208 PALAVK  213 (432)
T ss_pred             hHhcCC
Confidence            445333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.17  E-value=0.64  Score=47.83  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             HhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh---------
Q 014462          214 IDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI---------  282 (424)
Q Consensus       214 ~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~---------  282 (424)
                      ...++++.++.|.+....  +--.--+.+++.+++.|..|||...|..-.||.+ ..+...+++++.++..         
T Consensus        52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI-~~~s~~i~~~l~Lig~aaDig~~lg  130 (498)
T KOG0637|consen   52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI-LAGSLLIAVSLFLIGYAADIGLLLG  130 (498)
T ss_pred             hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchH-HHhhHHHHHHHhhhhhHhhhhHHhc
Confidence            457889999999986533  3344457788899999999997644433333333 3334444455444321         


Q ss_pred             ch--h----H---HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 014462          283 GW--P----G---EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGA-LYNFLTLASPAGSLIFSGVIAS  343 (424)
Q Consensus       283 ~~--~----~---~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~-~~g~~~~~~~lgs~l~~~~l~g  343 (424)
                      .+  .    .   ...++..+.-++.-...++.=+...++....+.-+ +++.......+|+.+ | +..|
T Consensus       131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL-G-Y~~g  199 (498)
T KOG0637|consen  131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL-G-YALG  199 (498)
T ss_pred             CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee-e-eecc
Confidence            11  1    1   22334444455666778888899999998887777 889999999999986 4 4444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=92.04  E-value=1.4  Score=43.92  Aligned_cols=174  Identities=16%  Similarity=0.181  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHH-HHcCCCchh----HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS----IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~----~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      |-+++++.   .+++.-+.|..|++ ++..-++..    ..=++..+.++++.+..|++.-.+.|.    +...+.++.+
T Consensus       239 WSlWwAl~---scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~----g~~ll~~~s~  311 (433)
T KOG3810|consen  239 WSLWWALA---SCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW----GDLLLAVGSA  311 (433)
T ss_pred             hHHHHHHh---hchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh----hHHHHHHHHH
Confidence            55555432   33444444556665 333222221    133444555677778888885555443    2235566655


Q ss_pred             HHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          272 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  350 (424)
Q Consensus       272 ~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~  350 (424)
                      ..+...++++ ....+..|++.++....+....++....+++....+.+|..+|+.....-    ++-.++.-.+.|..|
T Consensus       312 ~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl----~lQsilT~iVvd~~g  387 (433)
T KOG3810|consen  312 VQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVAL----ILQSILTLIVVDDRG  387 (433)
T ss_pred             HhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHH----HHHHhheEEEEcccc
Confidence            5554444444 45678899999999999999999998888888888999999998554332    222322223445444


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 014462          351 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~  402 (424)
                      -+.             +        .-..-.-|..=|++.+++.+++..+..
T Consensus       388 ~~L-------------~--------ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~  418 (433)
T KOG3810|consen  388 LGL-------------D--------IRTQFVVYSSYFIVLGVIFLIGFGIEY  418 (433)
T ss_pred             cCC-------------C--------cceeEEEEeehHHHHHHHHHHHHHHHH
Confidence            111             0        000011245558888988888876643

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.00  E-value=1.3  Score=47.35  Aligned_cols=164  Identities=16%  Similarity=0.223  Sum_probs=103.6

Q ss_pred             HHhhhhHHHHHhcHHHHH-HHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH
Q 014462          204 VLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  280 (424)
Q Consensus       204 ~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~  280 (424)
                      .+-..+.+++..|+-.++ ..++.+...+  .++.++-..+...+.+++++|.+--|...     +.++.++..++..++
T Consensus        47 ~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t-----I~~~s~i~~~G~~~l  121 (571)
T KOG1237|consen   47 VLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFT-----INIGSLISLLGLFGL  121 (571)
T ss_pred             HHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHH
Confidence            333444445555665555 4577765443  77777777888889999999988543321     133333333332221


Q ss_pred             H-----h---c---------------h---hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcc------hhhHHHHHHHH
Q 014462          281 A-----I---G---------------W---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK------SFGALYNFLTL  328 (424)
Q Consensus       281 ~-----~---~---------------~---~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~------~~g~~~g~~~~  328 (424)
                      .     .   .               +   ...++.+.-++.+|.|+.-+...+.-++-|+.+      +...-+|....
T Consensus       122 t~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf  201 (571)
T KOG1237|consen  122 TLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYF  201 (571)
T ss_pred             HHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHH
Confidence            1     0   0               0   125677777888899999888999999999722      23467788888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          329 ASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       329 ~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                      ...+|..+ +..+.-++-|..+                                |...|.+..++.+++.++-+...
T Consensus       202 ~~~~g~l~-a~t~~vyiq~~~~--------------------------------w~lgf~i~~~~~~lai~iF~~g~  245 (571)
T KOG1237|consen  202 SQNGGALL-AQTVLVYIQDNVG--------------------------------WKLGFGIPTVLNALAILIFLPGF  245 (571)
T ss_pred             HHHHHHHH-HHHHHHhhhhccc--------------------------------ceeeccHHHHHHHHHHHHHHcCc
Confidence            88888876 4444444333333                                88899998888887766655433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=91.26  E-value=0.04  Score=58.48  Aligned_cols=173  Identities=14%  Similarity=0.146  Sum_probs=2.6

Q ss_pred             hcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhch--------
Q 014462          215 DNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW--------  284 (424)
Q Consensus       215 ~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~~--------  284 (424)
                      ..+.++-+.++++.+++  +.+.+-+++.+..+...++.+|..      ||-|+..+.++++++.++++...        
T Consensus        24 ~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~h------rprwig~g~~~~~~g~~l~~lPhf~~~~y~~   97 (539)
T PF03137_consen   24 SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGH------RPRWIGIGALLMGLGSLLFALPHFLSGPYSY   97 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CcceeeecHHHHHHHHHHHhccHhhcCCCcc
Confidence            35667777789887665  777888888888887777765532      22344666677776665543100        


Q ss_pred             -------------------------------------------hHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhH
Q 014462          285 -------------------------------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGA  321 (424)
Q Consensus       285 -------------------------------------------~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~  321 (424)
                                                                 ...++++-++.|+|....+++-.+++=|..++|+-+.
T Consensus        98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~spl  177 (539)
T PF03137_consen   98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPL  177 (539)
T ss_dssp             ------------------------------------------------------SSS-----------------------
T ss_pred             ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCcc
Confidence                                                       1234556777888888899999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCc-ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 014462          322 LYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV-SFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  400 (424)
Q Consensus       322 ~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l  400 (424)
                      ..|++.....+|-.+ |=.++|.....+.+-..         ..++ .....+++.=.|  .|-..|++.+.+.++..+.
T Consensus       178 YiGi~~~~~~lGPa~-Gf~lg~~~L~~yvD~~~---------~~~~~~~i~p~dp~WvG--AWWLGfli~g~~~~l~aip  245 (539)
T PF03137_consen  178 YIGILYAMSILGPAL-GFLLGSFCLRIYVDFPK---------VPPDGVGITPSDPRWVG--AWWLGFLICGILLFLSAIP  245 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhhhhHHhhccHHH-HHHHHHHHHhceeCCcc---------ccccCCCCCCCCccHHH--HHHHHHHHHHHHHHHHHHH
Confidence            889888888877775 54455544332210000         0000 000000111122  3777788888877776665


Q ss_pred             HHHHh
Q 014462          401 SLIVV  405 (424)
Q Consensus       401 ~~~l~  405 (424)
                      .+.+-
T Consensus       246 l~~FP  250 (539)
T PF03137_consen  246 LFFFP  250 (539)
T ss_dssp             -----
T ss_pred             HHcCC
Confidence            55544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=90.98  E-value=0.08  Score=52.04  Aligned_cols=99  Identities=10%  Similarity=0.107  Sum_probs=3.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhh--hcccCchhHHHHHHHHHHHHHHHHHH------------hchhHHHHHHHHHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIV--RKFAYPRPVAMAVAQVVMAFALLYYA------------IGWPGEIYVTTVLVGL  297 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g--~k~~~~r~~~l~~~~~~~~~~~ll~~------------~~~~~~l~~~~~l~G~  297 (424)
                      ...++.++.++||.+.++.  ++.  +++.+.   ...+.=++. +.++++.            +.+.+..++..++.|+
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~--~~~~~~~~~l~---~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~  260 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWP--RWPGPSPRWLW---ILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF  260 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhccee--EecccccccHH---HHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH
Confidence            5667899999999999976  232  222211   111111111 1111111            1233455667889999


Q ss_pred             HhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH
Q 014462          298 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  336 (424)
Q Consensus       298 ~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l  336 (424)
                      .+|-..+....+.++..+++++..+-+++..+..+|-.+
T Consensus       261 TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~  299 (309)
T PF01733_consen  261 TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFI  299 (309)
T ss_dssp             ------HHHH-----------------------------
T ss_pred             ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888888877777766666554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.82  E-value=19  Score=36.11  Aligned_cols=116  Identities=19%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHc-CCCc--hhHHHHHHHHHhhhhhhhhhhhhhhhhhcc-cCchhHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSL-GYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKF-AYPRPVAMAVAQVV  272 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~-g~s~--~~~~~sl~si~~~~gr~~~G~lsd~~g~k~-~~~r~~~l~~~~~~  272 (424)
                      |++..+.|....+|+.+-..+......+ |-..  .+.+++.+-...-+|..++-++.|.--.-+ ..-..+.-.++-+-
T Consensus        10 alL~laVf~~aa~GlvyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~S   89 (508)
T COG4262          10 ALLLLAVFVCAACGLVYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVS   89 (508)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccch
Confidence            5666666666777887777777777764 4433  233555555555555555555444332111 00000011111111


Q ss_pred             HHHHHHHHHhc---hhHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q 014462          273 MAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASE  312 (424)
Q Consensus       273 ~~~~~ll~~~~---~~~~l~~~~~l~G~~~G~~~~~~~~~~se  312 (424)
                      .++..+.++..   +.+.+++..+++|.-.|+-.++...+...
T Consensus        90 a~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~  132 (508)
T COG4262          90 AAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            12222234432   34578889999999889888877776655

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.44  E-value=19  Score=39.67  Aligned_cols=70  Identities=17%  Similarity=0.217  Sum_probs=56.1

Q ss_pred             CHHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHH-Hhhhhhhhhhhhhhhhh
Q 014462          186 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIV  255 (424)
Q Consensus       186 t~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si-~~~~gr~~~G~lsd~~g  255 (424)
                      +++++++|+.|....++..+......++...+|-+++. +|.+++.+  ++...++ +.++|-+++|++.-|+-
T Consensus       384 s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  384 SIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            56779999999999999888888888899999999965 89987655  5545554 45578889999988774

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=89.31  E-value=10  Score=39.11  Aligned_cols=154  Identities=18%  Similarity=0.162  Sum_probs=91.4

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhH
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  264 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~  264 (424)
                      ++.-++.+.|. -.+++.+.+...+.+.+.+..++.+.|+++...  +-++-++.+..|.....++..|+|..|.-   .
T Consensus       252 w~~Y~~q~vfl-as~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G---~  327 (432)
T PF06963_consen  252 WRTYFRQPVFL-ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG---L  327 (432)
T ss_pred             HHHHHhCHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH---H
Confidence            33344444433 333443444445555556777888889998754  77788888999999999999999865533   1


Q ss_pred             HHHHHHH-HHHHHHHHHH-hchh-HHHHHHHHHHHHH--hhhhHh---HHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQV-VMAFALLYYA-IGWP-GEIYVTTVLVGLS--YGAHWA---IVPAAASELFGLKSFGALYNFLTLASPAGSLI  336 (424)
Q Consensus       265 ~l~~~~~-~~~~~~ll~~-~~~~-~~l~~~~~l~G~~--~G~~~~---~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l  336 (424)
                      +....+. +..++...+. ..++ .......++.|+.  -=+.|+   ...-++.|..|.++||...|+-+....+...+
T Consensus       328 ~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  328 WSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            2222222 2222222222 2222 2223333333432  223443   45667788999999999999999888887775


Q ss_pred             HHHHHHHHHH
Q 014462          337 FSGVIASGIY  346 (424)
Q Consensus       337 ~~~~l~g~l~  346 (424)
                        -++.+.+.
T Consensus       408 --~~~~~ii~  415 (432)
T PF06963_consen  408 --SFVLTIIF  415 (432)
T ss_pred             --HHHHHhcc
Confidence              34555444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=88.96  E-value=1.7  Score=34.15  Aligned_cols=66  Identities=8%  Similarity=-0.004  Sum_probs=45.2

Q ss_pred             HHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Q 014462          210 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA  281 (424)
Q Consensus       210 ~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~  281 (424)
                      -+.+...+|.+.++.++|.++.  +-+...++..+|.+...++.++..+++.      +..+.+...+..+.++
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL------LRAGLLLTVLSTAAMA   75 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHH
Confidence            3556667899999999987654  8888889999999999888776443322      2444444444444444

Note that many members are hypothetical proteins.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.84  E-value=6.3  Score=40.17  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=64.9

Q ss_pred             HHHH-HHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH--------hchhHHHHHHHHHHHHHhhhh
Q 014462          232 YVSM-ISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--------IGWPGEIYVTTVLVGLSYGAH  302 (424)
Q Consensus       232 ~~sl-~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~--------~~~~~~l~~~~~l~G~~~G~~  302 (424)
                      .+.+ +.++..+|++.+.+.-+.-  +|..    +..+.+=+..+..+.+.        +.+.++..+...+.|+.+|=.
T Consensus       287 ~~~l~fN~~d~vG~~~a~~~~~~~--~r~l----~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYl  360 (406)
T KOG1479|consen  287 LVFLSFNVFDLIGSILAALLTWPD--PRKL----TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYL  360 (406)
T ss_pred             HHHHHhHHHHHhhhhhhhcccCCC--Ccee----hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchH
Confidence            4555 8899999998888874332  2222    11221111222222211        344567788899999999999


Q ss_pred             HhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          303 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  345 (424)
Q Consensus       303 ~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l  345 (424)
                      .++...++.+-.++++.-.+-+++...-..|-..  +.+.+++
T Consensus       361 tsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~--G~~~s~l  401 (406)
T KOG1479|consen  361 TSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLAL--GSLLSWV  401 (406)
T ss_pred             hhheehhcCCCCChHHHHHHHHHHHHHHHHHHHH--hhHHHHH
Confidence            9999999999998777666655555554444432  3444543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.30  E-value=2.1  Score=46.81  Aligned_cols=172  Identities=15%  Similarity=0.126  Sum_probs=106.3

Q ss_pred             cHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc----------
Q 014462          216 NLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----------  283 (424)
Q Consensus       216 ~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~~----------  283 (424)
                      -+.++-+.++++.++.  +.+.+-+++.+.-....|..-|..|-|.+      .++.++|+++.++++..          
T Consensus       119 ~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~I------g~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  119 VITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWI------GIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcccee------eechhHHHHHHHHHhChHHhcCcchhh
Confidence            4455556678876654  66777778877777777766555443332      45555555555443211          


Q ss_pred             ----------h--------------------------------hH-HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhh
Q 014462          284 ----------W--------------------------------PG-EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFG  320 (424)
Q Consensus       284 ----------~--------------------------------~~-~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g  320 (424)
                                +                                ++ .+.++-++.|+|--..+++-.+++=|....++-.
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp  272 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP  272 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence                      0                                11 3445667778888889999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 014462          321 ALYNFLTLASPAGSLIFSGVIASGIYDYYAEK-QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV  399 (424)
Q Consensus       321 ~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~  399 (424)
                      ...|+++....+|-++ |=.+++++...+.+- ..         +   ..-...++.=+|  +|...|++.+.+.++..+
T Consensus       273 lYlgi~~~~~~lGPai-GfllgS~~l~lYvD~~~~---------~---~~it~~DPrWIG--AWWlGFLi~g~~~~~~a~  337 (735)
T KOG3626|consen  273 LYLGILYSMAILGPAI-GFLLGSFCLKLYVDFGLS---------P---IGITPTDPRWIG--AWWLGFLICGALLLFSAV  337 (735)
T ss_pred             HHHHHHHHHHHhhhHH-HHHHHHHHHHeeeccccC---------C---CCCCCCCcchhh--HHHHHHHHHHHHHHHHHH
Confidence            8888888877777765 544444443333211 00         0   000111122223  488889999999888887


Q ss_pred             HHHHHhhhh
Q 014462          400 MSLIVVHRT  408 (424)
Q Consensus       400 l~~~l~~~~  408 (424)
                      ..+.+-++.
T Consensus       338 p~f~fPk~l  346 (735)
T KOG3626|consen  338 PLFFFPKEL  346 (735)
T ss_pred             HHHhCcccC
Confidence            777665443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=86.14  E-value=36  Score=35.84  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             HHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCC-CCcc-cCCCC
Q 014462          296 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNM-LPVS-FRDQE  373 (424)
Q Consensus       296 G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~  373 (424)
                      .+..-.++....+.-+.+-.+.--|+-..++|+.+++|+-- -..++=++.|....++=.      +.. .... ....+
T Consensus       416 sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtW-P~~~vL~lVD~fT~~~C~------~~~t~~~~c~~~~~  488 (544)
T PF13000_consen  416 SFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTW-PRTFVLWLVDYFTVATCT------VPGTNSFSCSSDAE  488 (544)
T ss_pred             HHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCc-hHHHHHHHhhhccccccC------CCCCCCceeccHHH
Confidence            34444455555555566667777899999999999999983 333444777875432210      000 0000 01122


Q ss_pred             CCcc---cCCcch--HHHHHHHHHHHHHHHHHHH
Q 014462          374 TPTC---LGSICY--SITCGIMAGLCIIAMVMSL  402 (424)
Q Consensus       374 ~~~c---~g~~c~--~~~f~i~a~~~~~~~~l~~  402 (424)
                      ...|   .|.+|-  +-.+++...+|++-.++.+
T Consensus       489 k~~Ct~~~GG~C~i~rDGYYi~~~lCvviGi~~~  522 (544)
T PF13000_consen  489 KEQCTKAGGGTCVIIRDGYYITNILCVVIGIVLW  522 (544)
T ss_pred             HHHHhhCCCCeEEEEeccchhhhHHHHHHHHHHH
Confidence            2357   377786  7788888888887555444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=84.43  E-value=2  Score=45.24  Aligned_cols=48  Identities=13%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             HHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          213 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       213 ~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      +...++.+.+++|++++..  ++..--+..+++.|++|+++||+.+||..
T Consensus        30 l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~l   79 (618)
T KOG3762|consen   30 LFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPL   79 (618)
T ss_pred             cchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCch
Confidence            3446778889999998865  88888899999999999999999887765

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=80.72  E-value=37  Score=35.15  Aligned_cols=45  Identities=7%  Similarity=0.036  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHH
Q 014462          287 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  336 (424)
Q Consensus       287 ~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l  336 (424)
                      ..++..++.|++.|...+....+++ .||++.    .+....+.++++.+
T Consensus       108 ~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~  152 (437)
T TIGR00939       108 TTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVL  152 (437)
T ss_pred             HHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHH
Confidence            3344556667777777766665554 776543    34444455555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.67
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.56
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.49
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.47
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.44
2xut_A	524	Proton/peptide symporter family protein; transport	99.44
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.38
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.21
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.13
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.06
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.97
2xut_A	524	Proton/peptide symporter family protein; transport	98.55

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.67  E-value=1.4e-14  Score=145.85  Aligned_cols=185  Identities=16%  Similarity=0.164  Sum_probs=150.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhh--hhcccCc
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI--VRKFAYP  261 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~--g~k~~~~  261 (424)
                      .++.++++.+|.+.+..++.......+..++|.+.++ +|++....  +.++.++++.+|+++.|+++||+  ++|+.. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-  323 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-  323 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-
Confidence            4567889999999988888888878888899999988 79987654  78888999999999999999999  776433 


Q ss_pred             hhHHHHHHHHHHH-HHHHHHHhc---hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHH-HHHH
Q 014462          262 RPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLI  336 (424)
Q Consensus       262 r~~~l~~~~~~~~-~~~ll~~~~---~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~l-gs~l  336 (424)
                           .++..+.. ++.+++...   +.+.+.+..++.|++.+..++....++.|.+|.+++|+++++.++...+ |+.+
T Consensus       324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~  398 (451)
T 1pw4_A          324 -----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  398 (451)
T ss_dssp             -----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence                 33333333 444444332   4556677888889999999998999999999999999999999999999 9997


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          337 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       337 ~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                       +|.+.|.++|..+                                |+.+|++.+++++++.++.+++.++.++
T Consensus       399 -~~~~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (451)
T 1pw4_A          399 -ASAIVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR  439 (451)
T ss_dssp             -HHHHHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence             8999999999876                                9999999999999888877766544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.56  E-value=1.5e-13  Score=140.35  Aligned_cols=174  Identities=13%  Similarity=0.131  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHH------cCCCchhH--HHHHHHHHhhhhhhhhhhhhhh-hhhcccCchhH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPV  264 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~------~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~-~g~k~~~~r~~  264 (424)
                      +.+|.+++..++.....+.+...++.+.++      +|.+..+.  +.+...++..++++.+|+++|| +|||+.+    
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~----   88 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV----   88 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH----
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH----
Confidence            356777777777777777777778877755      78887654  8899999999999999999999 8998755    


Q ss_pred             HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcch--hhHHHHHHHHHHHHHHHHHHHHH
Q 014462          265 AMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVI  341 (424)
Q Consensus       265 ~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~--~g~~~g~~~~~~~lgs~l~~~~l  341 (424)
                        .++.++.+++.++++. .+.+.+++..++.|++.|...+...++++|+++.++  ++.++++.+.+..+|..+ +|.+
T Consensus        89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~  165 (491)
T 4aps_A           89 --FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLI  165 (491)
T ss_dssp             --HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHH
Confidence              6666777777666653 456788889999999999999999999999999988  888999999999999997 9999


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          342 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       342 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      +|.+.+..+                                |++.|++.+++++++.++.++..+
T Consensus       166 ~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          166 VGAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HHHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999988766                                999999998888877776655533

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.54  E-value=5.7e-13  Score=133.59  Aligned_cols=155  Identities=12%  Similarity=0.084  Sum_probs=123.4

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHc-CCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  262 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i-~~~~-g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r  262 (424)
                      +++.++++.+|...+..++..+....+..++|.+ .++. |++....  +.++..+++.+|+++.|+++||+++|+.+  
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~--  328 (438)
T 3o7q_A          251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL--  328 (438)
T ss_dssp             HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence            3458889999999999888888888888899999 8775 9887654  77888999999999999999999987643  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          263 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       263 ~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                          .++.++.+++.+++.........+..++.|++.+..++...+++.|.+|++ ++.+.++.. ...+|+.+ +|.+.
T Consensus       329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~  401 (438)
T 3o7q_A          329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM  401 (438)
T ss_dssp             ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence                445555555555544433333455568889999999999999999999865 888888877 56688887 89999


Q ss_pred             HHHHhhhh
Q 014462          343 SGIYDYYA  350 (424)
Q Consensus       343 g~l~d~~~  350 (424)
                      |.++|..+
T Consensus       402 g~l~~~~g  409 (438)
T 3o7q_A          402 GFVSDAAG  409 (438)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999876

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=8.9e-13  Score=132.15  Aligned_cols=143  Identities=15%  Similarity=0.033  Sum_probs=116.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  274 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~  274 (424)
                      +.+...+++...........+|.+.+++|.+..+.  +.+...++..++.+.+|+++||+|||+.+      .++.++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~  102 (438)
T 3o7q_A           29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHHH
Confidence            33344444433333444556788888999988765  88999999999999999999999998755      66666666


Q ss_pred             HHHHHH---H-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          275 FALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       275 ~~~ll~---~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      ++.+++   . ..+.+.+++..++.|++.|..++...++++|+++.++|+...++.+.+..+|..+ ++.+++.+.
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~  177 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            766665   4 3456788889999999999999999999999999999999999999999999997 899999887

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.49  E-value=2.5e-13  Score=133.79  Aligned_cols=169  Identities=10%  Similarity=0.131  Sum_probs=136.6

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHH
Q 014462          198 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF  275 (424)
Q Consensus       198 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~  275 (424)
                      .+....++.......+...+|.+.+++|.+..+.  ..+...++..++.+..|+++||+|||+.+      ..+.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~   77 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML   77 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence            3444444444444455566788888899987654  88899999999999999999999999877      566666666


Q ss_pred             HHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014462          276 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA  354 (424)
Q Consensus       276 ~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~  354 (424)
                      +.++.. ..+.+.+++..++.|++.+..++...++++|.+++++|++..++.+....+|..+ +|.+++.+.+..+    
T Consensus        78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~----  152 (375)
T 2gfp_A           78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN----  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence            666554 3456678889999999999999999999999999999999999999999999997 9999999888766    


Q ss_pred             hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462          355 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  405 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~  405 (424)
                                                  |+..|++.+.++++..+......
T Consensus       153 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~  175 (375)
T 2gfp_A          153 ----------------------------WRACYLFLLVLCAGVTFSMARWM  175 (375)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHC
Confidence                                        99999999888877665444333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.47  E-value=2.5e-13  Score=136.61  Aligned_cols=174  Identities=14%  Similarity=0.134  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      +.++.+++..++.......+...+|.+.+++ .+..+  .+.+...++..++.+.+|+++||+|||+.+      .++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~  100 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHHH
Confidence            3444555555544444444555677888888 77654  388899999999999999999999998744      56666


Q ss_pred             HHHHHHHHHHh-----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          272 VMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       272 ~~~~~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      +.+++.++++.     .+.+.+++..++.|++.|..++...++++|+++.++|+++.++.+.+..+|..+ +|.++|.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~  179 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            66666666544     356678889999999999999999999999999999999999999999999997 899999887


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          347 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       347 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      +..+                               .|+++|++.++++++..++.++..+
T Consensus       180 ~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          180 AWFN-------------------------------DWHAALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             HHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6544                               1899999999888877766655543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.44  E-value=1.1e-12  Score=131.96  Aligned_cols=183  Identities=10%  Similarity=0.045  Sum_probs=134.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCC---chh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYA---DTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY  260 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s---~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~  260 (424)
                      .++.++++++|.+.+..++.......+..++|.++++ ++..   ...  ...++..+++.++.+..|+++||++||+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l  292 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence            4567889999877666554444444455668887765 3322   111  256667788889999999999999987643


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHH-HHHHHHHHHHHH
Q 014462          261 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS  338 (424)
Q Consensus       261 ~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~-~~~~~lgs~l~~  338 (424)
                            .++.++++++.+++.. .+.+.+.+..++.+++.+...+....+++|.+|++.+|+++++. +....+|+.+ +
T Consensus       293 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-g  365 (417)
T 2cfq_A          293 ------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-M  365 (417)
T ss_dssp             ------HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-H
T ss_pred             ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-h
Confidence                  4455555555544443 34455666667778888777777889999999999999999994 7888899997 9


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462          339 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  408 (424)
Q Consensus       339 ~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~  408 (424)
                      |.+.|.++|..+                                |..+|.+.+++++++.++.+.+.+++
T Consensus       366 p~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          366 SVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             THHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             hhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            999999998766                                88999999999888887766544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.44  E-value=1e-12  Score=135.51  Aligned_cols=171  Identities=12%  Similarity=0.107  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cC------CCchhH--HHHHHHHHhhhhhhhhhhhhhhh-hhcccCchh
Q 014462          194 ADFLLLFFSLVLASGSGLTVIDNLGQICQS-LG------YADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP  263 (424)
Q Consensus       194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g------~s~~~~--~~sl~si~~~~gr~~~G~lsd~~-g~k~~~~r~  263 (424)
                      +.+|.+++..++.....+++...++.+.++ +|      ++..+.  +.+...++..++.+.+|+++||+ |||+.+   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~---   88 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI---   88 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence            456777777777777777777788877654 78      876544  88899999999999999999999 988754   


Q ss_pred             HHHHHHHHHHHHHHHHHH-hc-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHH---HHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF---LTLASPAGSLIFS  338 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~-~~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~---~~~~~~lgs~l~~  338 (424)
                         .++.++.+++.+++. .. +.+.+++..++.|++.|...+...++++|.++.+++++..++   .+.+..+|+.+ +
T Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g  164 (524)
T 2xut_A           89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A  164 (524)
T ss_dssp             ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred             ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence               556666666666655 34 567788899999999999999999999999999999765555   88999999997 8


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462          339 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  403 (424)
Q Consensus       339 ~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~  403 (424)
                      |.+.|.+.+..+                                |++.|++.+++++++.++.++
T Consensus       165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            999999887655                                999999998887776665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.38  E-value=5.1e-11  Score=121.40  Aligned_cols=169  Identities=11%  Similarity=-0.012  Sum_probs=114.6

Q ss_pred             HHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH----hc
Q 014462          210 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IG  283 (424)
Q Consensus       210 ~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~----~~  283 (424)
                      ...+..+.+.+.+..+.+....  ...+.++...++.++++++.||+|||+..      ..+...++++.+.+.    ..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~~~~  366 (491)
T 4gc0_A          293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQ  366 (491)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHHhcc
Confidence            3445556777778888776543  66677888999999999999999998644      333333333333322    11


Q ss_pred             -hhHHHHHHHHHHHHHhhh-hHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 014462          284 -WPGEIYVTTVLVGLSYGA-HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  361 (424)
Q Consensus       284 -~~~~l~~~~~l~G~~~G~-~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~  361 (424)
                       ......+...+...+++. ..++.+.+.+|+||++.|+++.++.+....+++++ ++.+...+.+.......      .
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~~~------~  439 (491)
T 4gc0_A          367 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLVAH------F  439 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHHHH------H
T ss_pred             cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh------h
Confidence             122222233333333333 33566789999999999999999999999999997 78777766554321100      0


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 014462          362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSV  411 (424)
Q Consensus       362 ~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~  411 (424)
                                          .+..+|++.+++++++.+..+++..+||..
T Consensus       440 --------------------~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          440 --------------------HNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             --------------------TTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             --------------------hhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence                                156789999999999999888888888764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.21  E-value=1.4e-09  Score=110.83  Aligned_cols=180  Identities=13%  Similarity=0.046  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCc--hhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 014462          196 FLLLFFSLVLASGSGLTVIDNLGQICQS-LGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  272 (424)
Q Consensus       196 fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~--~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~  272 (424)
                      ++.++...++...........++.+.++ .+.+.  ...+.++.++...++.++.|+++||++||+.... ..+.++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~-~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP-TKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch-HHHHHHHHH
Confidence            3444444444444444455667777776 56652  3347778888889999999999999998864322 223345555


Q ss_pred             HHHHHHHHHh----------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462          273 MAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  342 (424)
Q Consensus       273 ~~~~~ll~~~----------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~  342 (424)
                      ++++.+++..          .+...+.+..++.|++.+...+...+++.|.+|.+++|++.++.++...+|+.+ ++.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~  442 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV  442 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            5555444332          144566778889999999989999999999999999999999999999999997 89887


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462          343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      |.+.|. +                                +...|.+.+++++++.++.+++.++.++
T Consensus       443 ~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          443 TLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             GGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776543 2                                6778888888888887777666555444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.13  E-value=2.9e-10  Score=111.68  Aligned_cols=154  Identities=12%  Similarity=0.046  Sum_probs=118.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      +++.++++++|...+..++.......+..++|.+.++ +|++....  +.+...++..++++..|++.||++++.     
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-----  266 (375)
T 2gfp_A          192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-----  266 (375)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-----
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            4568889999998888888777777777788888776 78776543  778888999999999999999998621     


Q ss_pred             HHHHHHHHH-HHHHHH--HHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVV-MAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  337 (424)
Q Consensus       264 ~~l~~~~~~-~~~~~l--l~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~  337 (424)
                         ..+..+ ...+..  .+..   .+.+.+++..++.|++.|..++...+.+.|.+| +++|+..++.+....+|+.+ 
T Consensus       267 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-  341 (375)
T 2gfp_A          267 ---WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-  341 (375)
T ss_dssp             ---HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-
T ss_pred             ---HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-
Confidence               111111 111111  1111   234556678888999999999999999999998 89999999999999999997 


Q ss_pred             HHHHHHHHHhhhh
Q 014462          338 SGVIASGIYDYYA  350 (424)
Q Consensus       338 ~~~l~g~l~d~~~  350 (424)
                      +|.+.|.++|..+
T Consensus       342 ~~~~~g~l~~~~~  354 (375)
T 2gfp_A          342 LASLSAMLPQTGQ  354 (375)
T ss_dssp             CSTTCTHHHHHHH
T ss_pred             HHHHHHHHhcCCc
Confidence            8999999987655

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.06  E-value=2.8e-09  Score=108.48  Aligned_cols=110  Identities=23%  Similarity=0.233  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-------------------hchhHHHHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-------------------IGWPGEIYVTT  292 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-------------------~~~~~~l~~~~  292 (424)
                      +++...++.++|.+++|+++||+|||+.+      .++.+++.++.++.+                   ..+.+.++++.
T Consensus        60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R  133 (491)
T 4gc0_A           60 CVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR  133 (491)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence            67788899999999999999999999755      566666666665543                   23466789999


Q ss_pred             HHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          293 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  348 (424)
Q Consensus       293 ~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~  348 (424)
                      ++.|++.|+..+..+++++|..|+++||...++...+..+|..+ +..+...+.+.
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~~~  188 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIARS  188 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhccc
Confidence            99999999999999999999999999999999999999999886 66555554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.97  E-value=8.9e-11  Score=118.02  Aligned_cols=151  Identities=11%  Similarity=0.055  Sum_probs=97.0

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .++++++|.+....++.......+...+|.+.++ +|.++.+.  +.+...++..++++.+|+++||+|||+.+      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------   76 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------   76 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence            6889999988887777666655666788888765 79887654  88899999999999999999999998755      


Q ss_pred             HHHHHHHHH---HHHHHHhchh--HHHHHHHHHHHHHhhhhHhHHHHHHHHhhC--cchhhHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAF---ALLYYAIGWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFG--LKSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       267 ~~~~~~~~~---~~ll~~~~~~--~~l~~~~~l~G~~~G~~~~~~~~~~se~fg--~~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                      .++.++.++   +.........  ..++....+.|++.|..++.....+.++.+  .++++..++.......+|..+ +|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~  155 (417)
T 2cfq_A           77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-GA  155 (417)
T ss_dssp             HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH-HH
Confidence            333322221   1111111100  011222333333333333333333333332  245677788888888999987 89


Q ss_pred             HHHHHHHh
Q 014462          340 VIASGIYD  347 (424)
Q Consensus       340 ~l~g~l~d  347 (424)
                      .+.|.+.+
T Consensus       156 ~l~~~l~~  163 (417)
T 2cfq_A          156 SIVGIMFT  163 (417)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998876

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.55  E-value=1.8e-07  Score=96.04  Aligned_cols=154  Identities=12%  Similarity=0.006  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhhhhhhhhhhh----hhhhhcccCchhHHHHHHHHHHHHHHHHHHh----------chhHHHHHHHHHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFS----EAIVRKFAYPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGL  297 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~ls----d~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~----------~~~~~l~~~~~l~G~  297 (424)
                      +.+...++..++.++.+++.    +|.++|...  ...+.++.++++++.+++..          .+.+.+.+..++.|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA--LRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHTTSGGGHHHHGGGTTTC------------CC--HHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            44444455555555555553    333322211  12234555666666555433          234556778889999


Q ss_pred             HhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcc
Q 014462          298 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTC  377 (424)
Q Consensus       298 ~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  377 (424)
                      +.+...+...+++.|.+|.+.+|+..|+.++...+|+.+ +|.+.|.+.|..+..     |...              .-
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~~~~~~~~~-----~~~~--------------~~  477 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW-VLLANVSVKSPTVTE-----QIVQ--------------TG  477 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHH-HHHHHHHTTSCHHHH-----HHHH--------------HH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhccccccc-----cccc--------------cc
Confidence            999999999999999999999999999999999999998 999999988754310     0000              00


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014462          378 LGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  409 (424)
Q Consensus       378 ~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~  409 (424)
                      .|  -.+..|++.+++++++.++.+++.++++
T Consensus       478 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (524)
T 2xut_A          478 MS--VTAFQMFFFAGFAILAAIVFALYARSYQ  507 (524)
T ss_dssp             SC--HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             cc--ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            00  0134488888888888777666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.67
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.44
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.42
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.1e-15  Score=147.19  Aligned_cols=197  Identities=16%  Similarity=0.149  Sum_probs=151.6

Q ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462          187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  263 (424)
Q Consensus       187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~  263 (424)
                      .++.++++.+|.+....++.......+..+++.+.++ +|++....  ..++..+.+.+|++++|+++||+++++..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---  318 (447)
T d1pw4a_         242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---  318 (447)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred             HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc---
Confidence            4457889999999988888888888888889888866 67776544  88888999999999999999999987533   


Q ss_pred             HHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014462          264 VAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  340 (424)
Q Consensus       264 ~~l~~~~~~~~~~~ll~~---~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~  340 (424)
                      ........+..++.+++.   ..+.+...+..++.|++.+...+.....+.|.+|.+.+|++.|+.++...+++.+.+|.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            121222222222222222   22345566777888999888888999999999999999999999998888865555899


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 014462          341 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN  418 (424)
Q Consensus       341 l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~~~~~~~~  418 (424)
                      +.|.+.|..|                                |+..|++++++++++.++..++..+++|..+++.++
T Consensus       399 ~~g~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e  444 (447)
T d1pw4a_         399 IVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE  444 (447)
T ss_dssp             HHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHh
Confidence            9999999887                                899999999988888888877776666666666554

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=7.4e-13  Score=129.82  Aligned_cols=172  Identities=13%  Similarity=0.145  Sum_probs=130.3

Q ss_pred             HHHHHHHHHhhhhHHHHHh---cHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462          197 LLLFFSLVLASGSGLTVID---NLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  271 (424)
Q Consensus       197 wll~~~~~~~~~~~~~~~~---~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~  271 (424)
                      |.++...+++....+....   .+.++.+++|.+.++.  +.+...++..++.+.+|+++||+|||+.+      .++.+
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~   97 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHH
Confidence            5555555554444332212   2223446688887654  88999999999999999999999998755      55566


Q ss_pred             HHHHHHHHHHh-----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462          272 VMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  346 (424)
Q Consensus       272 ~~~~~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~  346 (424)
                      +.+++.++.+.     .+...+++..++.|++.|..++....+++|+++.++|+++.++.+.+..+|+.+ ++.+.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~  176 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHh
Confidence            66666555432     345678889999999999999999999999999999999999999999999997 888888777


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462          347 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  406 (424)
Q Consensus       347 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~  406 (424)
                      +..+                               .|++.|++.+.++++..++.+.+.+
T Consensus       177 ~~~~-------------------------------~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         177 AWFN-------------------------------DWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhh-------------------------------cccccchhhhhhHHHHHHHHHHhcc
Confidence            6554                               1888888888888777666665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.9e-12  Score=123.82  Aligned_cols=140  Identities=11%  Similarity=0.049  Sum_probs=117.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHH
Q 014462          232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  310 (424)
Q Consensus       232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~  310 (424)
                      ..+...+...++....|++.||+++|+..      .++.++++++.+++. ..+.+.+++..++.|++.+..++...+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  337 (417)
T d1pv7a_         264 VTTMGELLNASIMFFAPLIINRIGGKNAL------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHCHHHHH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccch------hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888899999999999999987644      555666666666655 45566778888999999999999999999


Q ss_pred             HHhhCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHH
Q 014462          311 SELFGLKSFGALYNFL-TLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI  389 (424)
Q Consensus       311 se~fg~~~~g~~~g~~-~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i  389 (424)
                      .|.+|++.+|+.+++. ++...+|..+ +|.++|.++|+.|                                |+.+|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~G~l~~~~g--------------------------------~~~~~~~  384 (417)
T d1pv7a_         338 TSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG--------------------------------FQGAYLV  384 (417)
T ss_dssp             HHHSCGGGHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
Confidence            9999999999999985 4567799987 8999999999987                                9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhH
Q 014462          390 MAGLCIIAMVMSLIVVHRTKS  410 (424)
Q Consensus       390 ~a~~~~~~~~l~~~l~~~~~~  410 (424)
                      .+++++++.++++++.+++++
T Consensus       385 ~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         385 LGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHhhcCCCc
Confidence            999999888888877766554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5.1e-10  Score=106.42  Aligned_cols=153  Identities=10%  Similarity=0.040  Sum_probs=98.3

Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462          190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  266 (424)
Q Consensus       190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l  266 (424)
                      .+||+++|.+.+.+|+.......+...+|.++++ +|.|..+.  +.++..++..++.+.+|+++||+|||+.+      
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l------   76 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------   76 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH------
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------
Confidence            5799999999888887766655566677876654 89998765  88999999999999999999999998755      


Q ss_pred             HHHHHHHHHHHHHHHh-chhH----HHHHHHHHHHHHhhhhHhHHHHHHHHhhCc--chhhHHHHHHHHHHHHHHHHHHH
Q 014462          267 AVAQVVMAFALLYYAI-GWPG----EIYVTTVLVGLSYGAHWAIVPAAASELFGL--KSFGALYNFLTLASPAGSLIFSG  339 (424)
Q Consensus       267 ~~~~~~~~~~~ll~~~-~~~~----~l~~~~~l~G~~~G~~~~~~~~~~se~fg~--~~~g~~~g~~~~~~~lgs~l~~~  339 (424)
                      .++..+..++..++.. ....    ..++...+.+.+.+...........+....  +++....+........+..+ ++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  155 (417)
T d1pv7a_          77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-GA  155 (417)
T ss_dssp             HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc-cc
Confidence            3334444443333322 1111    123333344444444443333333333322  23445566666777777776 88


Q ss_pred             HHHHHHHhhh
Q 014462          340 VIASGIYDYY  349 (424)
Q Consensus       340 ~l~g~l~d~~  349 (424)
                      .+.+.+.+..
T Consensus       156 ~~~~~l~~~~  165 (417)
T d1pv7a_         156 SIVGIMFTIN  165 (417)
T ss_dssp             HHHHHHHHHC
T ss_pred             cccccccccc
Confidence            8888877654