Citrus Sinensis ID: 014489


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccHHHHccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHEEEHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLlrpkphleglVIATCASGNLGNLLLIIVPAicheqgspfgnrdvcssVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAqaaepeevpkevnkdFDANAQTQllrgttddqeDVSVLVAStksssdpecqiivpqashlqtrKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRnliigdsaplrVIQDSIEilgdgtipcITLILggnliqglrsstlkplIIIAVVCVRYIALPFIGVWVVKAAAalgflpsdplyHYVLMVQftlppamnigtMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAaepeevpkevnKDFDANAQTQllrgttddqedVSVLVAstksssdpecQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSleflhqlleellapptlaaIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
**FWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSV*************FFIWSYSYQLIKQSSVRYKA****************************************************QIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWIL*
*GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKA******************************************************IVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQG****TLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRY**************EVNKDFDANAQTQLLRGTTDDQEDVSVLVA********ECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
*GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYK*L***************************************************************RKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
oooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
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oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
P38355427 Uncharacterized transport yes no 0.888 0.880 0.230 4e-11
O14197452 Uncharacterized transport yes no 0.898 0.840 0.192 7e-08
>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1 Back     alignment and function desciption
 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 175/416 (42%), Gaps = 40/416 (9%)

Query: 14  IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
           ++QV++I++ G   A+    LL   +++ ++ +   +FTP L+F+ LAK++++ +I    
Sbjct: 18  VLQVVIIALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIA 75

Query: 74  FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL-------LLIIVPA 126
            +P+   +T  I  I G I+ ++L         V+A    GN  +L       L   +P 
Sbjct: 76  IIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPN 135

Query: 127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY-QLIKQSSVRYKALAQAAEPE 185
           +  +Q  P  NRD  +S G+ Y      +G    WS+ Y +L+K S        Q   P 
Sbjct: 136 LTWDQ-IPNDNRDNVASRGILYLLIFQQIGQMLRWSWGYNKLMKWSGEN----TQHMPPS 190

Query: 186 EVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKES 245
           +V            Q+ L R    D E++       +   + E   +        +  + 
Sbjct: 191 QV------------QSLLERTPNIDNEELVNEEQEEQELLEEENNRMNSSFLSSSSIGDK 238

Query: 246 FWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWL-RNLIIGDSAPLRVIQDSIEILGD 304
            W++S     ++    L PP  + I   +  A+  L R L + D        +++  LG 
Sbjct: 239 IWQKSCTVFERIRAN-LNPPLYSMIFAVVVAAIGPLQRELFMEDGFINNTFAEAVTQLGS 297

Query: 305 GTIPCITLILGGNLIQGL--------RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAA 356
            +IP I ++LG NL             S  L   II  ++      LP I + V     +
Sbjct: 298 VSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMILPSCFLLPIIAIAVKYINVS 357

Query: 357 LGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 412
           +     DP++  V  +    PPA+ +  +TQL +  + E + +  W Y V +L ++
Sbjct: 358 IL---DDPIFLVVGFLLTVSPPAIQLTQITQLNEFFEAEMADILFWGYAVLSLPVS 410





Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
255561457406 auxin:hydrogen symporter, putative [Rici 0.959 1.0 0.702 1e-170
224081467397 predicted protein [Populus trichocarpa] 0.938 1.0 0.697 1e-168
359480743421 PREDICTED: uncharacterized transporter Y 0.990 0.995 0.644 1e-159
297797791395 predicted protein [Arabidopsis lyrata su 0.933 1.0 0.638 1e-153
18398448396 auxin efflux carrier-like protein [Arabi 0.931 0.994 0.598 1e-150
356496547419 PREDICTED: uncharacterized transporter Y 0.985 0.995 0.597 1e-149
356538399419 PREDICTED: uncharacterized transporter Y 0.985 0.995 0.592 1e-149
147765756436 hypothetical protein VITISV_012649 [Viti 0.938 0.910 0.637 1e-149
357484233420 Transporter, putative [Medicago truncatu 0.985 0.992 0.603 1e-149
21536598396 unknown [Arabidopsis thaliana] 0.931 0.994 0.593 1e-149
>gi|255561457|ref|XP_002521739.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223539130|gb|EEF40726.1| auxin:hydrogen symporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/423 (70%), Positives = 352/423 (83%), Gaps = 17/423 (4%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGFWT FEVASMPI+QVLLIS LGA MAT Y NLLT+DAR+SLNK+VF VFTPSLMFASL
Sbjct: 1   MGFWTLFEVASMPIIQVLLISGLGAFMATNYCNLLTSDARKSLNKIVFVVFTPSLMFASL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL++IISWWFMPVNV +TFLIGGILGW++VK+L+PKP+LEGLVIATC+SGNLGNLL
Sbjct: 61  AQTVTLQDIISWWFMPVNVGLTFLIGGILGWVLVKVLKPKPYLEGLVIATCSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI+VPAIC+E GSPFG+R+ C S+GLSYASFSMA+GGF+IW+Y+Y LI+ S+ + +A+  
Sbjct: 121 LIVVPAICNENGSPFGDRETCKSIGLSYASFSMAIGGFYIWTYTYHLIRTSATKLRAIQA 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
             E  + P   NKD +A  +T LL+G  +DQE V + V S KS  D E Q   P +S   
Sbjct: 181 EEEASKAP---NKDLEATPETHLLKG--EDQEHVVISVPSIKSVDDQESQ---PASS--- 229

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE 300
                 W + +  L Q++EELLAPPT+AAI GF+FGA  +LRNLIIG SAPLRVIQDSI+
Sbjct: 230 ------WSKWIGILRQIMEELLAPPTIAAIFGFLFGATTFLRNLIIGSSAPLRVIQDSIK 283

Query: 301 ILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFL 360
           +LGDGTIPCITLILGGNLIQGLRSS +KP II+ V+ VR++ LP IG+W+VKAA +LGFL
Sbjct: 284 LLGDGTIPCITLILGGNLIQGLRSSRIKPWIIVGVLFVRFMMLPAIGIWLVKAAGSLGFL 343

Query: 361 PSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 420
           PSDPLYH+VLMVQ+TLPPAMNIGTMTQLFDV QEECSVLFLWTYLVAALALT WS +YMW
Sbjct: 344 PSDPLYHFVLMVQYTLPPAMNIGTMTQLFDVGQEECSVLFLWTYLVAALALTFWSTIYMW 403

Query: 421 ILS 423
           ILS
Sbjct: 404 ILS 406




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081467|ref|XP_002306421.1| predicted protein [Populus trichocarpa] gi|222855870|gb|EEE93417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359480743|ref|XP_002276744.2| PREDICTED: uncharacterized transporter YBR287W-like [Vitis vinifera] gi|296082565|emb|CBI21570.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297797791|ref|XP_002866780.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312615|gb|EFH43039.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398448|ref|NP_565417.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|30680004|ref|NP_849964.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|42570811|ref|NP_973479.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|79322403|ref|NP_001031363.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|4914371|gb|AAD32907.1| expressed protein [Arabidopsis thaliana] gi|110740748|dbj|BAE98473.1| hypothetical protein [Arabidopsis thaliana] gi|330251540|gb|AEC06634.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|330251541|gb|AEC06635.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|330251542|gb|AEC06636.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|330251543|gb|AEC06637.1| auxin efflux carrier-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356496547|ref|XP_003517128.1| PREDICTED: uncharacterized transporter YBR287W-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356538399|ref|XP_003537691.1| PREDICTED: uncharacterized transporter YBR287W-like [Glycine max] Back     alignment and taxonomy information
>gi|147765756|emb|CAN62432.1| hypothetical protein VITISV_012649 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357484233|ref|XP_003612404.1| Transporter, putative [Medicago truncatula] gi|355513739|gb|AES95362.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|21536598|gb|AAM60930.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
TAIR|locus:2156847395 AT5G65980 "AT5G65980" [Arabido 0.475 0.508 0.678 6.7e-134
TAIR|locus:2053908396 AT2G17500 [Arabidopsis thalian 0.494 0.527 0.588 6.8e-132
TAIR|locus:2011731390 AT1G76520 "AT1G76520" [Arabido 0.430 0.466 0.455 2.1e-88
TAIR|locus:2011746415 AT1G76530 "AT1G76530" [Arabido 0.364 0.371 0.515 1.2e-81
TAIR|locus:2185123431 AT5G01990 "AT5G01990" [Arabido 0.442 0.433 0.353 1.6e-59
TAIR|locus:2026366457 AT1G71090 "AT1G71090" [Arabido 0.425 0.393 0.347 1.3e-55
SGD|S000000491427 YBR287W "Protein of unknown fu 0.366 0.362 0.271 5.7e-12
CGD|CAL0005962446 orf19.6117 [Candida albicans ( 0.321 0.304 0.284 5.2e-11
UNIPROTKB|Q59RR6446 ZSP11 "Potential Auxin Efflux 0.321 0.304 0.284 5.2e-11
CGD|CAL0001802446 orf19.733 [Candida albicans (t 0.321 0.304 0.284 6.7e-11
TAIR|locus:2156847 AT5G65980 "AT5G65980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 744 (267.0 bits), Expect = 6.7e-134, Sum P(2) = 6.7e-134
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query:     1 MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
             MGF    EVASMPIVQVLLISVLGA +AT Y +LL+AD RRS+NK+VF VFTP +MFA+L
Sbjct:     1 MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query:    61 AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
             A+TVTL++IISWWFMP+NV +TFL+GGILGW+VVKLL PKP L GL+IATCASGN+GNL+
Sbjct:    61 AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query:   121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
             LI+VPAIC E+GSPFGNR VC S+GLSYASFSMALGGF+IW+YSYQL++ S+ +++AL  
Sbjct:   121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEA 180

Query:   181 AAEPEEVPKEVNKDFDANAQTQLLR 205
             A     + K  NKD D++    LL+
Sbjct:   181 AG----LVKSPNKDIDSDPHALLLK 201


GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS
GO:0009926 "auxin polar transport" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2053908 AT2G17500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011731 AT1G76520 "AT1G76520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011746 AT1G76530 "AT1G76530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185123 AT5G01990 "AT5G01990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026366 AT1G71090 "AT1G71090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000000491 YBR287W "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0005962 orf19.6117 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59RR6 ZSP11 "Potential Auxin Efflux Carrier protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
CGD|CAL0001802 orf19.733 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_V000390
hypothetical protein (397 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 1e-66
COG0679311 COG0679, COG0679, Predicted permeases [General fun 2e-09
COG0679311 COG0679, COG0679, Predicted permeases [General fun 1e-06
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information
 Score =  215 bits (549), Expect = 1e-66
 Identities = 107/407 (26%), Positives = 161/407 (39%), Gaps = 86/407 (21%)

Query: 9   VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEE 68
                ++ V LI +LG L       +L  D    +NK+V     P L+F+S++  VTLE 
Sbjct: 1   TVVEAVLPVFLIMLLGYLAGK--SGILPPDQASGINKLVVYFALPLLIFSSISTNVTLEM 58

Query: 69  IISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAIC 128
           I+ +W +PV V +   I  I+G++V K+ +      G++I T A  N G L L ++ A+ 
Sbjct: 59  IVDFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALY 118

Query: 129 HEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVP 188
            E              GLSYA  S+ LG   IW+  Y LI+    +     ++       
Sbjct: 119 GE-------------EGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEESG------ 159

Query: 189 KEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWK 248
                                                           S           
Sbjct: 160 --------------------------------------------DTSGSMTLLILIVVLL 175

Query: 249 RSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIP 308
           + +          L PPT A+++G I G V +L  LI         IQDSI ILGD  IP
Sbjct: 176 KLI----------LNPPTYASLLGLILGLVGFLLPLIFP-----EFIQDSISILGDAAIP 220

Query: 309 CITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHY 368
                LG  L  G   S+L        + +R I +P + + +V      G      L   
Sbjct: 221 MALFSLGLTLALGKLKSSLGAATATIHLILRLILMPLVMLGIVLLLGLRG------LTLL 274

Query: 369 VLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 415
           V +++  LPPA+ +G + QL++V +EE S +  WT L+A L L  W 
Sbjct: 275 VAILEAALPPAIVLGVIAQLYNVDEEEASTVVFWTTLLALLTLPLWI 321


This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
KOG2722408 consensus Predicted membrane protein [Function unk 100.0
PF03547385 Mem_trans: Membrane transport protein; InterPro: I 100.0
COG0679311 Predicted permeases [General function prediction o 100.0
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 99.98
PRK09903314 putative transporter YfdV; Provisional 99.97
TIGR00841 286 bass bile acid transporter. Functionally character 97.87
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 96.17
TIGR00841286 bass bile acid transporter. Functionally character 96.16
COG0385 319 Predicted Na+-dependent transporter [General funct 95.86
TIGR00832 328 acr3 arsenical-resistance protein. The first prote 95.61
PF13593 313 DUF4137: SBF-like CPA transporter family (DUF4137) 93.53
TIGR00832328 acr3 arsenical-resistance protein. The first prote 85.91
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 83.29
COG0385319 Predicted Na+-dependent transporter [General funct 81.81
>KOG2722 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=3.6e-95  Score=699.32  Aligned_cols=402  Identities=50%  Similarity=0.931  Sum_probs=338.8

Q ss_pred             CchHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHH
Q 014489            1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN   78 (423)
Q Consensus         1 m~~~~li~~a~--~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~   78 (423)
                      |+++++.-.|-  +|++||++++.+|+++|+++.|++++++||.+|+++|++|+|||+|+|+|+++|.|++.+||+||+|
T Consensus         2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn   81 (408)
T KOG2722|consen    2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN   81 (408)
T ss_pred             chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence            78999988888  9999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhH
Q 014489           79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF  158 (423)
Q Consensus        79 ~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~  158 (423)
                      +.+.+++|.++||+++|++|+|+++|+++++||+|||+||||++++.|+|++++.|||++|.|..||.+|++++|++|++
T Consensus        82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i  161 (408)
T KOG2722|consen   82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI  161 (408)
T ss_pred             HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcccccccchhhH-HhhhhcCCCCCCCcccCccccccccccccCCCCCCcccchhhccCCCCCCCCccccccCccc
Q 014489          159 FIWSYSYQLIKQSSVRY-KALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQAS  237 (423)
Q Consensus       159 ~~ws~g~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (423)
                      ++|||+|+++-++..+. .+.+++ +.+...+   +.   ..++  .+...|++++..    ..+..+|++++       
T Consensus       162 l~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~~~---~~---~~~s--~e~~~~~~~k~~----ll~~~en~~~~-------  221 (408)
T KOG2722|consen  162 LRWTYVYRMLLPPNLELMSALKES-PVEALLE---SV---PQPS--VESDEDSTCKTL----LLASKENRNNQ-------  221 (408)
T ss_pred             EEEEEEeeeecCCchhhhhcCChh-hhhhhhh---cc---CCCC--cccccccccccc----cccccccCCCc-------
Confidence            99999999776653221 111111 0110000   00   0000  000000000100    00111111111       


Q ss_pred             ccccchhhhhHhHH-HHHHHHHHHhhChhHHHHHHHHHHhchHHHHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhcc
Q 014489          238 HLQTRKESFWKRSL-EFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGG  316 (423)
Q Consensus       238 ~~~~~~~~~~~~~~-~~~~~~~~~~~~Pp~ia~i~giivglippL~~~f~~~~~pl~~i~~a~~~lG~a~vPl~llVLGa  316 (423)
                       ...++....+|.+ ...+..++.+++||++|+++|+++|.|||||+++|++++|+++++|+++.+|+++||+++++||+
T Consensus       222 -~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGg  300 (408)
T KOG2722|consen  222 -VVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGG  300 (408)
T ss_pred             -eeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhcc
Confidence             0001101111111 11123389999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCC-CCchhhhHHhhccCCchHHHHHHHHhccCcchHH
Q 014489          317 NLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEE  395 (423)
Q Consensus       317 ~La~~~~~s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~-~Dpv~~fv~~L~~~~PpA~~l~~itq~~~~~e~e  395 (423)
                      ||++|++++.++.|++++++++||+++|.+|++++..++|+|.++ |||+|+||++||+++|||+|+.++||++|.+|+|
T Consensus       301 nL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~E  380 (408)
T KOG2722|consen  301 NLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERE  380 (408)
T ss_pred             ccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHH
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014489          396 CSVLFLWTYLVAALALTGWSMVYMWILS  423 (423)
Q Consensus       396 ~s~~l~~~y~~~~itl~~~~~~~l~~~~  423 (423)
                      |++++||+|+++.+++++|+++|+|++.
T Consensus       381 cs~il~W~y~va~l~ltvw~~~f~~lv~  408 (408)
T KOG2722|consen  381 CSVILFWTYAVASLSLTVWSVFFLWLVV  408 (408)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence            9999999999999999999999999873



>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 47/281 (16%), Positives = 88/281 (31%), Gaps = 85/281 (30%)

Query: 97  LRPKPH--LEG--------LVIATCASG-------------NLGN-----LLLIIVPAIC 128
           LRP  +  ++G        + +  C S              NL N      +L ++  + 
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 129 HEQGSPFGNR-DVCSSVGLSYASFSMALGGFFI-WSYSYQLIKQSSVRYKALAQAAEPEE 186
           ++    + +R D  S++ L   S    L        Y   L+   +V+      A     
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----- 261

Query: 187 VPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESF 246
                   F+ + +  LL  TT  ++    L A+T         I +   S   T  E  
Sbjct: 262 --------FNLSCKI-LL--TTRFKQVTDFLSAAT------TTHISLDHHSMTLTPDEV- 303

Query: 247 WKRSL--EFLHQLLEELLAPPTLAAIVGF---IFGAVV------WLRNLIIGDSAPLRVI 295
             +SL  ++L    ++L  P  +         I    +      W     +       +I
Sbjct: 304 --KSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 296 QDSIEILG----------------DGTIPCITL-ILGGNLI 319
           + S+ +L                    IP I L ++  ++I
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
3zux_A 332 Transporter, ASBTNM; transport protein, membrane p 97.69
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 94.45
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
Probab=97.69  E-value=7.2e-05  Score=73.58  Aligned_cols=109  Identities=13%  Similarity=0.019  Sum_probs=89.9

Q ss_pred             ccchhhhhhhccccccccccCC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHH
Q 014489          305 GTIPCITLILGGNLIQGLRSST-LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG  383 (423)
Q Consensus       305 a~vPl~llVLGa~La~~~~~s~-~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~  383 (423)
                      ..+.++++..|+++....-++. .++|.+....+.+++++|+++..+.+..      +.||.+...+++..|+|++.+..
T Consensus        47 ~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s~  120 (332)
T 3zux_A           47 WLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL------NLPAEIAVGVILVGCCPGGTASN  120 (332)
T ss_dssp             HHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHHH
Confidence            4678999999999975322221 2456667778999999999999887653      67999999999999999999999


Q ss_pred             HHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489          384 TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM  419 (423)
Q Consensus       384 ~itq~~~~~e~e~s~~l~~~y~~~~itl~~~~~~~l  419 (423)
                      .+|++.+-+.+........+.+++++++|+|+.+++
T Consensus       121 v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~  156 (332)
T 3zux_A          121 VMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA  156 (332)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999877767777888999999999999998875



>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00