Citrus Sinensis ID: 014496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MGNWMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccEEEEEEcccccccccccccccEEEEEEEcccccccEEEEEEEccccEEEEEEccccccccccEEEEEEccccccccccccEEEEEEEccccEEEEEEEEcccccccccccEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEEEEEEEcccccccccccccHHHHHcccccccEEEEEccccccHHHHHHHHHcccccEEEEEEEEEEccccccEEEEEEEEcccccHHHccccccEEEEcccHHHHcHHHHHHHccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccEEEEEEEccccccccccccEEEEEEEEccccccccEEEEEEEccccEEEEEEcccccccccEEEEEEEccccccccccccEEEEEEEccccEEEEEEEEcccccccccccEEEEEccccEEEEEEEccccccccccccccccccHHEEcccccccccccccEEEEEEEEccccEEEEEEEEEEEEEEcccccccccEEEEEEEEEccEEEEEEccccccccccccccEEEEEHHHHcHcEEEEccccccHHHHHHHHHHHccccEEEEEEEEEccccccccEEEEEEEccccccccEcccccEEEEcccHHHcHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgnwmnkeppppmvlvpplfdfpplaaRTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRimlkpiddphvdmiatvsgpldhkpeenivGNALFRWQrelddphtfmdlfvsnsdpvlrirsstyypkwgfgafgtipllmkkrissedygvmglrygtgnlsfgamlmpfaikdelpknaWLVSKMGRLTvgvqyepqyggkedakyknLMNWSYAIGygvgsgsplspsfnfglelAKSSVFIASFYQHVVVQRRvknpleedeivgITNYIDFGFELqtriddaktansipesSFQVAASWQANKNFLlkgkvgplsSSVAMAFkswwkpsftfsisatkdrvvgktsygfgirvenlreasyqradpnfvmltpskehlaegmvwktgrrpmlqsdvnagnfeglpkelrpmgkfl
Flexible Loop (DISEMBL)
mgnwmnkeppppmvlVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVsgpldhkpeeNIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSStyypkwgfgafgtipLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRvknpleedeiVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPsftfsisatkdrvvgktsygfgirvenlreasyqradpnfvMLTPSKEHLAEGMVWKTGRRPMLQSdvnagnfeglpkelrpmgkfl
Low Complexity Region (SEG)
MGNWMNKEppppmvlvpplfdfpplAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL
Disordered region (IsUnstruct)
*************VLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTP**EHLAEGMVWK******************************
Disordered Region (DISOPRED)
*********PPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLM*********GVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYE*********KYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDD*********SSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL
Disordered Region (DISEMBL)
MGNWMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL
Disordered Region (DISPRO)
*****NKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPM****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNWMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
224060076	423	predicted protein [Populus trichocarpa]	1.0	1.0	0.846	0.0
449450107	425	PREDICTED: uncharacterized protein LOC10	1.0	0.995	0.835	0.0
255567319	426	conserved hypothetical protein [Ricinus	1.0	0.992	0.814	0.0
225452456	423	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.765	0.0
356571344	426	PREDICTED: uncharacterized protein LOC10	0.947	0.941	0.733	1e-179
357496003	465	hypothetical protein MTR_6g007040 [Medic	0.947	0.862	0.680	1e-176
270342122	421	hypothetical protein [Phaseolus vulgaris	0.940	0.945	0.728	1e-176
297818400	425	hypothetical protein ARALYDRAFT_484582 [	1.0	0.995	0.691	1e-168
18405582	425	uncharacterized protein [Arabidopsis tha	1.0	0.995	0.691	1e-166
21536576	425	unknown [Arabidopsis thaliana]	1.0	0.995	0.687	1e-165

>gi|224060076|ref|XP_002300037.1| predicted protein [Populus trichocarpa] gi|222847295|gb|EEE84842.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/423 (84%), Positives = 397/423 (93%)

Query: 1   MGNWMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFS 60
           MGN MNKEPPPPMVLVPPLFDFPPLAARTRMLESSYN+LF KLALKCLF+DYFEEA HF+
Sbjct: 1   MGNLMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNILFGKLALKCLFEDYFEEASHFT 60

Query: 61  TRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPV 120
           TRIMLKPIDDPHVD IAT+SGPL+HKPEENIVGNALFRWQ +LDDPH+FMDLFVS+SDP+
Sbjct: 61  TRIMLKPIDDPHVDFIATLSGPLNHKPEENIVGNALFRWQSDLDDPHSFMDLFVSSSDPI 120

Query: 121 LRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDEL 180
           L++RSS YYPK+GFGAFG  PLLM+KRIS+EDYGV+GLRYG+ NLS GA LMP A K E 
Sbjct: 121 LQMRSSAYYPKYGFGAFGIFPLLMRKRISTEDYGVVGLRYGSENLSVGAALMPLASKYES 180

Query: 181 PKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLE 240
           PK+AWLVSKMGRLTVGVQYEPQYG  + AKYKNLMNWS A+GYGVGSGSPLSPSFNF LE
Sbjct: 181 PKHAWLVSKMGRLTVGVQYEPQYGSTDGAKYKNLMNWSAAVGYGVGSGSPLSPSFNFSLE 240

Query: 241 LAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESS 300
           LAK+S FIASFYQHVVVQRRVKNPLEE+EIVGITNYIDFGFELQTR+DD KT+N+IP+S+
Sbjct: 241 LAKTSQFIASFYQHVVVQRRVKNPLEENEIVGITNYIDFGFELQTRVDDPKTSNNIPDST 300

Query: 301 FQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIR 360
           FQ AASWQANKNFLLKGKVGPLSS++A AFKSWWKPSFTF+ISAT+DR++GKTSYGFGIR
Sbjct: 301 FQAAASWQANKNFLLKGKVGPLSSTLAFAFKSWWKPSFTFNISATRDRIIGKTSYGFGIR 360

Query: 361 VENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMG 420
           +ENLREASYQRADPNFVMLTPSKEHLAEG++WK G+RPMLQSDVNAGNF+GLP+ELRP+G
Sbjct: 361 IENLREASYQRADPNFVMLTPSKEHLAEGIIWKIGKRPMLQSDVNAGNFDGLPRELRPLG 420

Query: 421 KFL 423
           K L
Sbjct: 421 KIL 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450107|ref|XP_004142805.1| PREDICTED: uncharacterized protein LOC101205581 [Cucumis sativus] gi|449483757|ref|XP_004156681.1| PREDICTED: uncharacterized LOC101205581 [Cucumis sativus]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/425 (83%), Positives = 395/425 (92%), Gaps = 2/425 (0%)

Query: 1   MGNWMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFS 60
           MGNW+NKEPPPPMVLVPPLFD+PPLAARTRMLESSYN+LF KLALKCLFDDYF+EARHFS
Sbjct: 1   MGNWLNKEPPPPMVLVPPLFDYPPLAARTRMLESSYNLLFGKLALKCLFDDYFDEARHFS 60

Query: 61  TRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPV 120
           T IMLKPIDDPHVD++ATVSGPLDHKPE+ IVGNALFRWQ ++DDPHTF+DL+VSNSDPV
Sbjct: 61  TVIMLKPIDDPHVDLVATVSGPLDHKPEDKIVGNALFRWQSDIDDPHTFVDLYVSNSDPV 120

Query: 121 LRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDEL 180
           L++RS  YYPK+GFGAFG  PLL KKR+SSED+G+MGLRYG+ NLS G  LMPF+ KDEL
Sbjct: 121 LQMRSCAYYPKYGFGAFGIFPLLQKKRLSSEDFGLMGLRYGSRNLSAGVTLMPFSSKDEL 180

Query: 181 PKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLE 240
           PK+AWLVSK+GRLT GVQYEPQYG K+ A  KNLMNWS AIGY VGSGSPLSPSFNFGLE
Sbjct: 181 PKSAWLVSKIGRLTTGVQYEPQYGIKDGASLKNLMNWSCAIGYDVGSGSPLSPSFNFGLE 240

Query: 241 LAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQT--RIDDAKTANSIPE 298
           LAK+S FIASFYQHVVVQRRVKNPLEE+EIVGITNYIDFGFELQ+  R+DD + AN+IP+
Sbjct: 241 LAKNSQFIASFYQHVVVQRRVKNPLEENEIVGITNYIDFGFELQSQMRVDDVQAANNIPD 300

Query: 299 SSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFG 358
           S+FQ+AASWQANKNFLLKGKVGPLSSS+AMAFKSWWKPSFTFSISA +DR+VG+TSYGFG
Sbjct: 301 STFQIAASWQANKNFLLKGKVGPLSSSLAMAFKSWWKPSFTFSISAVRDRIVGRTSYGFG 360

Query: 359 IRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRP 418
           IRVENLREASYQRADPNFVMLTPSKEHLAEGMVWK G+RPMLQSD+NAGNF+G+PKELRP
Sbjct: 361 IRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKIGKRPMLQSDINAGNFDGIPKELRP 420

Query: 419 MGKFL 423
           + K L
Sbjct: 421 LNKIL 425

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567319|ref|XP_002524639.1| conserved hypothetical protein [Ricinus communis] gi|223536000|gb|EEF37658.1| conserved hypothetical protein [Ricinus communis]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/426 (81%), Positives = 393/426 (92%), Gaps = 3/426 (0%)

Query: 1   MGN---WMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEAR 57
           MGN    MNKEPPPP+VLVPPLFDFPPLAARTRMLESSYN+LF KLALK LF+DYFEEAR
Sbjct: 1   MGNVMTMMNKEPPPPVVLVPPLFDFPPLAARTRMLESSYNVLFGKLALKSLFEDYFEEAR 60

Query: 58  HFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNS 117
           HFSTRIMLKPIDDPHVD+I TVSGPLDH PEE I+GNALFRWQ ++ DPHTFMDLFVS  
Sbjct: 61  HFSTRIMLKPIDDPHVDLITTVSGPLDHNPEEKIIGNALFRWQSDVHDPHTFMDLFVSTL 120

Query: 118 DPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIK 177
           DP+L+IRS  YYP++GFGAFG  PLL++ RI+S+D+GVMGLRYG+GNLSFGA LMPFA+K
Sbjct: 121 DPILQIRSCAYYPRYGFGAFGVFPLLLRNRIASDDFGVMGLRYGSGNLSFGATLMPFAVK 180

Query: 178 DELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNF 237
           +ELPK+AWLVSKMGRLTVGVQYEP  G K + KYKNLMNWS AIGYGVGSGSPLSPSFNF
Sbjct: 181 EELPKSAWLVSKMGRLTVGVQYEPGSGSKGNGKYKNLMNWSAAIGYGVGSGSPLSPSFNF 240

Query: 238 GLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIP 297
            LELAK+S FIASFYQHVVVQRRVKNPLEE+EIVGITNY DFGFELQTR+DD +T+N+IP
Sbjct: 241 CLELAKNSQFIASFYQHVVVQRRVKNPLEENEIVGITNYFDFGFELQTRVDDVETSNNIP 300

Query: 298 ESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGF 357
           +S+FQVAASWQANKNFLLKGKVGPLSSS+ +AFKSWWKPSFTF++SAT+DR++GKT+YGF
Sbjct: 301 DSTFQVAASWQANKNFLLKGKVGPLSSSLTLAFKSWWKPSFTFNVSATRDRIIGKTAYGF 360

Query: 358 GIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELR 417
           GIRVENLREASYQRADPNF+MLTPSKEHLAEG++WK+G+RPMLQS++NAGNF  LP+ELR
Sbjct: 361 GIRVENLREASYQRADPNFLMLTPSKEHLAEGILWKSGKRPMLQSEINAGNFNDLPRELR 420

Query: 418 PMGKFL 423
           P+GK L
Sbjct: 421 PLGKIL 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452456|ref|XP_002278059.1| PREDICTED: uncharacterized protein LOC100243971 [Vitis vinifera] gi|296087664|emb|CBI34920.3| unnamed protein product [Vitis vinifera]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/423 (76%), Positives = 381/423 (90%)

Query: 1   MGNWMNKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFS 60
           MGN+ NKEPPPP+VLVPPLFDFPPLAARTRMLESSYN+LF KLALKCLF+DYFEEARHFS
Sbjct: 1   MGNYFNKEPPPPLVLVPPLFDFPPLAARTRMLESSYNLLFGKLALKCLFEDYFEEARHFS 60

Query: 61  TRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPV 120
           TRIMLKP DDP+VD++ATVSGPLD+KPE  ++GNALFRWQ ++DDPHTF+DLFVSN +PV
Sbjct: 61  TRIMLKPTDDPNVDLVATVSGPLDNKPEGKVLGNALFRWQGDVDDPHTFVDLFVSNYEPV 120

Query: 121 LRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDEL 180
           LR+RS +YYP +GFG+F   PL +K+RI+SE+YGV+GLR+ + NLS GA  +PF+  D+ 
Sbjct: 121 LRLRSCSYYPTYGFGSFVIFPLQLKRRIASENYGVVGLRHSSENLSLGATFVPFSTADKC 180

Query: 181 PKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLE 240
           P NAWLVSK+GRLTVGVQYEPQ G K+  ++KNL NWS AIGYGVG+GSPLSPSF FGLE
Sbjct: 181 PTNAWLVSKIGRLTVGVQYEPQCGSKDYTRFKNLRNWSCAIGYGVGTGSPLSPSFIFGLE 240

Query: 241 LAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESS 300
           LAKSS FIASFYQHVVVQRRVKNPLEE+E+VGITNYIDFGFELQ+R++D +T+N +P+S+
Sbjct: 241 LAKSSQFIASFYQHVVVQRRVKNPLEENEVVGITNYIDFGFELQSRVEDVETSNGLPDST 300

Query: 301 FQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIR 360
           FQVAASWQANKNFLLKGK GPLSSS+ +AFKSWWKPSFTFSISAT+DR VGKT+ GFGI 
Sbjct: 301 FQVAASWQANKNFLLKGKAGPLSSSIVLAFKSWWKPSFTFSISATRDRTVGKTALGFGIH 360

Query: 361 VENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMG 420
           VEN+REASY+RADPNFVMLTPSKEHLAEG+ W++G+RPMLQSD+N+ NF+GLP+ELRP G
Sbjct: 361 VENIREASYERADPNFVMLTPSKEHLAEGIHWRSGKRPMLQSDLNSENFDGLPRELRPYG 420

Query: 421 KFL 423
             L
Sbjct: 421 NIL 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571344|ref|XP_003553838.1| PREDICTED: uncharacterized protein LOC100784371 [Glycine max]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 298/406 (73%), Positives = 356/406 (87%), Gaps = 5/406 (1%)

Query: 20  FDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATV 79
           FDFPPLAAR RML SSY+++F KLAL  LF+DYF +AR+F+TRIMLKPI+DPHVD+IATV
Sbjct: 24  FDFPPLAARNRMLHSSYDVVFGKLALTSLFEDYFHQARNFTTRIMLKPIEDPHVDLIATV 83

Query: 80  SGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGT 139
           SGPLDHKP+++I G+ALFRWQ +++DPHTFMDL+VS S+P+L++RS  YYPK+GFGAFG 
Sbjct: 84  SGPLDHKPKDSIAGDALFRWQSDVNDPHTFMDLYVSTSNPILQMRSCAYYPKYGFGAFGV 143

Query: 140 IPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQY 199
            PLL+KKR SS+DYG+MGLRYG+GNLSFG  L+PFA+KDELPK+AWLVSKMGRLT GVQY
Sbjct: 144 FPLLLKKRESSQDYGLMGLRYGSGNLSFGVTLLPFAMKDELPKSAWLVSKMGRLTAGVQY 203

Query: 200 EPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQR 259
           EPQ G   +AK  NLMNWS A+GYGVGSGSPL PSFNF LEL KSS FIASFYQH+VVQR
Sbjct: 204 EPQQG---NAKLSNLMNWSCAMGYGVGSGSPLCPSFNFNLELVKSSQFIASFYQHMVVQR 260

Query: 260 RVK--NPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKG 317
           RV   NPLEE+ +VGITNYIDFGFELQT +DDA   N++ + +F++ ASWQANKNFLLK 
Sbjct: 261 RVSSFNPLEENSVVGITNYIDFGFELQTCVDDAIAENNMLDPTFRIGASWQANKNFLLKA 320

Query: 318 KVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFV 377
           KVGP SSS+A+AFKSWWKPSFTFSISAT+DR  GK  YGFGI+ E+LREASYQRADPN+V
Sbjct: 321 KVGPRSSSMALAFKSWWKPSFTFSISATRDRADGKMQYGFGIQSESLREASYQRADPNYV 380

Query: 378 MLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL 423
           MLT SKEHLA+G+VWK G+RPML+SD++AG+F+GLP+EL+P+ K L
Sbjct: 381 MLTQSKEHLAKGIVWKAGKRPMLKSDIDAGHFDGLPRELQPLDKIL 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496003|ref|XP_003618290.1| hypothetical protein MTR_6g007040 [Medicago truncatula] gi|355493305|gb|AES74508.1| hypothetical protein MTR_6g007040 [Medicago truncatula]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/441 (68%), Positives = 355/441 (80%), Gaps = 40/441 (9%)

Query: 20  FDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATV 79
           FDFPP+AAR RMLESSY+++F KLAL+CLF+DYF++ +HF TRIMLKPIDDPHVD+IATV
Sbjct: 28  FDFPPIAARNRMLESSYDVVFGKLALRCLFNDYFQQPKHFVTRIMLKPIDDPHVDLIATV 87

Query: 80  SGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGT 139
           SGPLD KP+ENI GNALFRWQ +++DPHTFMDL+VS SDPVL++RS  YYP++GFGAFG 
Sbjct: 88  SGPLDQKPDENINGNALFRWQSDVNDPHTFMDLYVSTSDPVLQMRSCAYYPRYGFGAFGV 147

Query: 140 IPLLMKKRIS------------------SEDYGVMGLRYGTGNLSFGAMLMPFAI----- 176
            PLL+K R S                  S+D GVMGLRYG+GNLS G  LMPFA      
Sbjct: 148 FPLLLKNRTSSQIATFTADKVRQLYRETSQDSGVMGLRYGSGNLSCGVTLMPFASITIYN 207

Query: 177 -----------KDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGV 225
                      KDELPK+ WLVSK+GR+T GVQYEP +   E+AK  NLMNWS A+ YGV
Sbjct: 208 NTEEALKSKMEKDELPKSVWLVSKIGRVTAGVQYEPHH---ENAKLSNLMNWSCAMAYGV 264

Query: 226 GSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQT 285
           GS SPLSPSFNF LEL KSS F+ASFYQH+VVQRRVKNPLEE+ +VGITNYIDFGFELQT
Sbjct: 265 GSQSPLSPSFNFSLELVKSSQFVASFYQHMVVQRRVKNPLEENTVVGITNYIDFGFELQT 324

Query: 286 RIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSI--- 342
            +DDA  AN+I +S+FQ+AASWQANKNFL+K K GP SS++A+AFKSWWKPSFTFSI   
Sbjct: 325 SVDDAIAANNISDSTFQIAASWQANKNFLVKAKAGPKSSTMALAFKSWWKPSFTFSISGT 384

Query: 343 SATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQS 402
           S T+DR  G+  YGFG++ E+LREASYQRADPNFVMLTPSKEHLAEG+VW+TG+RPMLQS
Sbjct: 385 STTRDRADGQVQYGFGLQSESLREASYQRADPNFVMLTPSKEHLAEGIVWETGKRPMLQS 444

Query: 403 DVNAGNFEGLPKELRPMGKFL 423
           D++AG+F+GLP+ELRP+ K L
Sbjct: 445 DIDAGHFDGLPRELRPLDKIL 465

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270342122|gb|ACZ74705.1| hypothetical protein [Phaseolus vulgaris]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 295/405 (72%), Positives = 347/405 (85%), Gaps = 7/405 (1%)

Query: 20  FDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATV 79
           FDFPP++AR RML S+Y++ F K+AL  LF DYF +ARHF+TRIMLKPIDDPHVD+IATV
Sbjct: 23  FDFPPISARNRMLHSAYDVTFGKMALASLFQDYFHQARHFTTRIMLKPIDDPHVDLIATV 82

Query: 80  SGPLDHKPE-ENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFG 138
           SGPLD KP  ++I+G+ALFRWQ +++DPHTFMDL+VS SDP+L++RS  YYPK+GFGAFG
Sbjct: 83  SGPLDRKPNNDSIMGDALFRWQSDVNDPHTFMDLYVSTSDPILQMRSCAYYPKYGFGAFG 142

Query: 139 TIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQ 198
             PLL+KKR S +DYG+MGLRYG+GNLSFG  L+PFA+KDE+PK+AWLVSKMGR+T GVQ
Sbjct: 143 VFPLLLKKRESPQDYGLMGLRYGSGNLSFGVTLVPFAMKDEIPKSAWLVSKMGRVTAGVQ 202

Query: 199 YEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQ 258
           +EPQ   K  AK  NLMNWS A+GYGVGSGSPL PSFNF LEL KSS FIASFYQH+VVQ
Sbjct: 203 FEPQ---KRSAKLSNLMNWSCALGYGVGSGSPLCPSFNFNLELVKSSQFIASFYQHMVVQ 259

Query: 259 RRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGK 318
           RRVKNPLEE+ +VGITNYIDFGFEL T +DDA  AN+I +S+FQ+ ASWQANKNFLLK K
Sbjct: 260 RRVKNPLEENSVVGITNYIDFGFELLTSVDDAIAANNISDSTFQIGASWQANKNFLLKAK 319

Query: 319 VGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVM 378
            GP SSS+A+AFKSWWKPSFT +   T+DR  GK  YGFGI+ ENLREASYQRADPNFVM
Sbjct: 320 AGPRSSSMALAFKSWWKPSFTIT---TRDRADGKMQYGFGIQSENLREASYQRADPNFVM 376

Query: 379 LTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL 423
           LTPSKEHLAEG+VW+TG+RPM QSDV+AG+F+ LP+ELRP  K L
Sbjct: 377 LTPSKEHLAEGIVWETGKRPMFQSDVDAGHFDVLPRELRPFDKIL 421

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818400|ref|XP_002877083.1| hypothetical protein ARALYDRAFT_484582 [Arabidopsis lyrata subsp. lyrata] gi|297322921|gb|EFH53342.1| hypothetical protein ARALYDRAFT_484582 [Arabidopsis lyrata subsp. lyrata]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 294/425 (69%), Positives = 355/425 (83%), Gaps = 2/425 (0%)

Query: 1   MGNWM-NKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHF 59
           MGN +  KEPPPP+VLVPPLFDFPPL+ARTRMLESSYN+LF KLALKCLF+DYFEEA +F
Sbjct: 1   MGNALVKKEPPPPVVLVPPLFDFPPLSARTRMLESSYNLLFGKLALKCLFEDYFEEANNF 60

Query: 60  STRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDP 119
           S + +LKPIDDPHVD++A+VSG +D + + + VGNA FRWQ ++DDPHTF+DL VS S+P
Sbjct: 61  SAKFLLKPIDDPHVDLVASVSGAVDGRADGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNP 120

Query: 120 VLRIRSSTYYPKWGFGAFGTIPLLMKKRIS-SEDYGVMGLRYGTGNLSFGAMLMPFAIKD 178
           VL++RSS YYPK+G GAF   PL+ KK  + SE+Y +MGLRYG+ NLS GA + PF   +
Sbjct: 121 VLQMRSSAYYPKYGIGAFAVYPLISKKTGNLSEEYRIMGLRYGSTNLSVGATVTPFTANN 180

Query: 179 ELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFG 238
           ELPK+AWLVSKMGR TVGVQYEP YG ++ AKY +L NWS A GYGVGS SPLSPSFN G
Sbjct: 181 ELPKHAWLVSKMGRFTVGVQYEPLYGSEDLAKYTDLRNWSCAAGYGVGSQSPLSPSFNIG 240

Query: 239 LELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPE 298
           +ELA+SS FIA+FYQH+VVQRRVKNP EE+++VGITNYID GFELQ+R+DD+ T ++ P+
Sbjct: 241 IELARSSQFIATFYQHIVVQRRVKNPFEENQVVGITNYIDLGFELQSRVDDSTTPHNAPD 300

Query: 299 SSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFG 358
           S  Q+AASWQANKNFLLKGKVG  SS++++AFKSWWKPSF F+ISAT +   G    GFG
Sbjct: 301 SLLQMAASWQANKNFLLKGKVGAHSSTLSLAFKSWWKPSFAFNISATTNHRTGYVECGFG 360

Query: 359 IRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRP 418
           +RV+N+REASYQRADPNFVMLTP+KEHLAEG+VWK G+RPM Q+DV+A NF  LPKELRP
Sbjct: 361 LRVDNIREASYQRADPNFVMLTPNKEHLAEGIVWKMGKRPMYQADVDAENFSELPKELRP 420

Query: 419 MGKFL 423
             K L
Sbjct: 421 SQKIL 425

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405582|ref|NP_566828.1| uncharacterized protein [Arabidopsis thaliana] gi|18087557|gb|AAL58910.1|AF462820_1 AT3g27930/K24A2_2 [Arabidopsis thaliana] gi|21360441|gb|AAM47336.1| AT3g27930/K24A2_2 [Arabidopsis thaliana] gi|332643861|gb|AEE77382.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/425 (69%), Positives = 352/425 (82%), Gaps = 2/425 (0%)

Query: 1   MGNWM-NKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHF 59
           MGN +  KEPPPP+VLVPPLFD+PPL+ARTRMLESSYN+LF KLAL+CLF+DYFEEA  F
Sbjct: 1   MGNALVKKEPPPPVVLVPPLFDYPPLSARTRMLESSYNLLFGKLALRCLFEDYFEEANRF 60

Query: 60  STRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDP 119
           + + +LKP DDPHVD++A+VSG +D + E + VGNA FRWQ ++DDPHTF+DL VS S+P
Sbjct: 61  TGKFLLKPTDDPHVDLVASVSGAVDGRVEGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNP 120

Query: 120 VLRIRSSTYYPKWGFGAFGTIPLLMK-KRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKD 178
           VL +RSS YYPK+G GAF   PL+ K    SSE+Y +MGLRYG+ NLS GA + PF+  +
Sbjct: 121 VLLMRSSAYYPKYGIGAFAVYPLISKITGKSSEEYRIMGLRYGSTNLSVGATVTPFSANN 180

Query: 179 ELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFG 238
           ELPK+AWLVSKMG LTVGVQYEP +G K+ AKY +  NWS A GYGVGS SPL+PSFN G
Sbjct: 181 ELPKHAWLVSKMGSLTVGVQYEPLHGSKDLAKYTDPRNWSCAAGYGVGSQSPLTPSFNIG 240

Query: 239 LELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPE 298
           +ELA+SS FIASFYQHVVVQRRV+NP EE+++VGITNYIDFGFELQ+R+DD+KT  + P+
Sbjct: 241 IELARSSQFIASFYQHVVVQRRVQNPFEENQVVGITNYIDFGFELQSRVDDSKTPPNAPD 300

Query: 299 SSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFG 358
           S  QVAASWQANKNFLLKGKVG  SS++++AFKSWWKPSF F+ISAT +   G    GFG
Sbjct: 301 SLLQVAASWQANKNFLLKGKVGAHSSTLSLAFKSWWKPSFAFNISATTNHRTGNVQCGFG 360

Query: 359 IRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRP 418
           +RV+NLREASYQRADPNFVMLTP+KEHLAEG+VWK G+RPM Q+DV+A NF  LPKELRP
Sbjct: 361 LRVDNLREASYQRADPNFVMLTPNKEHLAEGIVWKMGKRPMYQADVDAENFSELPKELRP 420

Query: 419 MGKFL 423
             K L
Sbjct: 421 SQKIL 425

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536576|gb|AAM60908.1| unknown [Arabidopsis thaliana]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/425 (68%), Positives = 351/425 (82%), Gaps = 2/425 (0%)

Query: 1   MGNWM-NKEPPPPMVLVPPLFDFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHF 59
           MGN +  KEPPPP+VLVPPLFD+PPL+ARTRMLESSYN+LF KLAL+CLF+DYFEEA  F
Sbjct: 1   MGNALVKKEPPPPVVLVPPLFDYPPLSARTRMLESSYNLLFGKLALRCLFEDYFEEANRF 60

Query: 60  STRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDP 119
           + + +LKP DDPHVD++A+VSG +D + E + VGNA FRWQ ++DDPHTF+DL VS S+P
Sbjct: 61  TAKFLLKPTDDPHVDLVASVSGAVDGRVEGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNP 120

Query: 120 VLRIRSSTYYPKWGFGAFGTIPLLMK-KRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKD 178
           VL +RSS YYPK+G GAF   PL+ K    SSE+Y +MGLRYG+  LS GA + PF+  +
Sbjct: 121 VLLMRSSAYYPKYGIGAFAVYPLISKITGKSSEEYRIMGLRYGSTXLSVGATVTPFSANN 180

Query: 179 ELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFG 238
           ELPK+AWLVSKMG LTVGVQYEP +G K+ AKY +  NWS A GYGVGS SPL+PSFN G
Sbjct: 181 ELPKHAWLVSKMGSLTVGVQYEPLHGSKDLAKYTDPRNWSCAAGYGVGSQSPLTPSFNMG 240

Query: 239 LELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPE 298
           +ELA+SS FIASFYQHVVVQR+V+NP EE+++VGITNYIDFGFELQ+R+DD+KT  + P+
Sbjct: 241 IELARSSQFIASFYQHVVVQRKVQNPFEENQVVGITNYIDFGFELQSRVDDSKTPPNAPD 300

Query: 299 SSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFG 358
           S  QVAASWQANKNFLLKGKVG  SS++++AFKSWWKPSF F+ISAT +   G    GFG
Sbjct: 301 SLLQVAASWQANKNFLLKGKVGAHSSTLSLAFKSWWKPSFAFNISATTNHRTGNVQCGFG 360

Query: 359 IRVENLREASYQRADPNFVMLTPSKEHLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRP 418
           +RV+NLREASYQRADPNFVMLTP+KEHLAEG+VWK G+RPM Q+DV+A NF  LPKELRP
Sbjct: 361 LRVDNLREASYQRADPNFVMLTPNKEHLAEGIVWKMGKRPMYQADVDAENFSELPKELRP 420

Query: 419 MGKFL 423
             K L
Sbjct: 421 SQKIL 425

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2086859	425	AT3G27930 "AT3G27930" [Arabido	0.940	0.936	0.686	1.8e-149

TAIR|locus:2086859 AT3G27930 "AT3G27930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
 Identities = 274/399 (68%), Positives = 329/399 (82%)

Query:    26 AARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDH 85
             +ARTRMLESSYN+LF KLAL+CLF+DYFEEA  F+ + +LKP DDPHVD++A+VSG +D 
Sbjct:    27 SARTRMLESSYNLLFGKLALRCLFEDYFEEANRFTGKFLLKPTDDPHVDLVASVSGAVDG 86

Query:    86 KPEENIVGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMK 145
             + E + VGNA FRWQ ++DDPHTF+DL VS S+PVL +RSS YYPK+G GAF   PL+ K
Sbjct:    87 RVEGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNPVLLMRSSAYYPKYGIGAFAVYPLISK 146

Query:   146 -KRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYG 204
                 SSE+Y +MGLRYG+ NLS GA + PF+  +ELPK+AWLVSKMG LTVGVQYEP +G
Sbjct:   147 ITGKSSEEYRIMGLRYGSTNLSVGATVTPFSANNELPKHAWLVSKMGSLTVGVQYEPLHG 206

Query:   205 GKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNP 264
              K+ AKY +  NWS A GYGVGS SPL+PSFN G+ELA+SS FIASFYQHVVVQRRV+NP
Sbjct:   207 SKDLAKYTDPRNWSCAAGYGVGSQSPLTPSFNIGIELARSSQFIASFYQHVVVQRRVQNP 266

Query:   265 LEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSS 324
              EE+++VGITNYIDFGFELQ+R+DD+KT  + P+S  QVAASWQANKNFLLKGKVG  SS
Sbjct:   267 FEENQVVGITNYIDFGFELQSRVDDSKTPPNAPDSLLQVAASWQANKNFLLKGKVGAHSS 326

Query:   325 SVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLTPSKE 384
             ++++AFKSWWKPSF F+ISAT +   G    GFG+RV+NLREASYQRADPNFVMLTP+KE
Sbjct:   327 TLSLAFKSWWKPSFAFNISATTNHRTGNVQCGFGLRVDNLREASYQRADPNFVMLTPNKE 386

Query:   385 HLAEGMVWKTGRRPMLQSDVNAGNFEGLPKELRPMGKFL 423
             HLAEG+VWK G+RPM Q+DV+A NF  LPKELRP  K L
Sbjct:   387 HLAEGIVWKMGKRPMYQADVDAENFSELPKELRPSQKIL 425


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      423       406   0.00078  118 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  269 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.57u 0.12s 30.69t   Elapsed:  00:00:01
  Total cpu time:  30.57u 0.12s 30.69t   Elapsed:  00:00:01
  Start:  Sat May 11 01:28:10 2013   End:  Sat May 11 01:28:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0841 hypothetical protein (423 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	0.001

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 36/151 (23%)

Query: 212 KNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIV 271
                +++A+GY        +  F   L+L        S++  V                
Sbjct: 156 SKFTKYNFALGY-------TNGDFELSLKLNNGKTLRGSYFHKV---------------- 192

Query: 272 GITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFK 331
             +  +  G ++       +T       +F V   +  + + L+K KV      + ++++
Sbjct: 193 --SPRLAVGAKVTWYSGTNET-------TFAVGGQYALDPDALVKAKVNN-DGQLGLSYQ 242

Query: 332 SWWKPSFTFSISA---TKDRVVGKTSYGFGI 359
              +P  T ++SA    K+   G   +G  +
Sbjct: 243 HKLRPGVTLTLSAGFDAKNLNQGGHKFGLSL 273

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	99.18
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.73
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	98.67
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	98.11
KOG3126	281	consensus Porin/voltage-dependent anion-selective	97.8
PF13557	248	Phenol_MetA_deg: Putative MetA-pathway of phenol d	90.2
cd00342	329	gram_neg_porins Porins form aqueous channels for t	85.98
KOG3296	308	consensus Translocase of outer mitochondrial membr	82.85
PF13609	311	Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1	82.32

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=99.18  E-value=3.4e-09  Score=99.01  Aligned_cols=264  Identities=16%  Similarity=0.245  Sum_probs=170.3

Q ss_pred             hhHHHHHHHHHHHHHhhccceeeeeecCCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCCceeeeeeccCCc
Q 014496           40 FAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDP  119 (423)
Q Consensus        40 FgKlal~~LF~DYF~~a~~~~~rimLkP~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPhTF~Dl~vSt~~p  119 (423)
                      .||.|.-+|-.||.+..-++    -++=--..-|.+.++-...   .....+.|++..++.-    +..=+|..++|.+-
T Consensus         7 igK~akDll~k~y~~g~~kl----~~~tk~~~gv~~~~~g~~~---~~~~~~~g~~e~k~~~----~~~t~~~k~~t~n~   75 (276)
T cd07306           7 IGKSAKDLLTKGYNFGAWKL----DVKTKTPNGVEFTSTGSKK---PDTGKVSGSLEAKYKI----KGLTLTQKWNTDNV   75 (276)
T ss_pred             cccchhhcccCCCCCCCEEE----EEEEECCCCeEEEEEEEeC---CCCceEEEEEEEEEEe----CCEEEEEEEeCCCc
Confidence            48899999999997422222    2222222234444433322   1237788998888853    26677888888663


Q ss_pred             ---eEEEeeccccCCcccceeeeeeeeecccCCCCCcceeeeeecccccccceeeecccccCCCCcceeEEeecccceee
Q 014496          120 ---VLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVG  196 (423)
Q Consensus       120 ---~l~~Rsc~y~Pkyg~GAFgv~PL~~~~~~~sedygvmGlRYgS~nlS~Ga~~~Pf~~s~e~pk~aWLV~k~G~ltaG  196 (423)
                         .+-++--.. |.--+-+=+.||=.     ....-+-+.+.|-.+++.+-+. +++-..-.+-..  +|-....+.+|
T Consensus        76 l~t~v~~~~~~~-~glk~~~~~~~~p~-----~~~~s~kl~~~y~~~~~~~~~~-v~~~~~p~~~~s--~~~g~~~~~~G  146 (276)
T cd07306          76 LLTEITIEDLLA-PGLKLTLDTTFPPN-----TGKKSGKLKAGYKHDPININAD-VDLNKGPLVGAS--AVLGYKGFLLG  146 (276)
T ss_pred             eeEEEEECcccC-CcceEEEEEEECCC-----CCCceEEEEEEEecCCeeEEEE-ecccCCCeeEEE--EEecccceEEE
Confidence               223332221 22222222222211     3456677899999987777544 222211111111  12222444455


Q ss_pred             eeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccccEeeeeee
Q 014496          197 VQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNY  276 (423)
Q Consensus       197 vQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvgITNY  276 (423)
                      +|..=...+      ..+..|++|++|--       |.|.+++.+.....|.+||||.+-       |           -
T Consensus       147 ~e~~yd~~~------~~~~~~~~~~~Y~~-------~d~~~s~~l~~~~~l~~S~~~kv~-------~-----------~  195 (276)
T cd07306         147 AEVVYDTAK------SKFTKYNFALGYTN-------GDFELSLKLNNGKTLRGSYFHKVS-------P-----------R  195 (276)
T ss_pred             EEEEEeccC------CcEeeEEEEEEEec-------CCeEEEEEECCCCEEEEEEEEEcC-------C-----------C
Confidence            554432111      24667999999954       357999999888999999999753       1           2


Q ss_pred             eeeeeEEEEeeccccccCCCCCcchheeccccccceeEEeeecCCCccceeeeeeccccceeEEEEEEeeeccc---Ccc
Q 014496          277 IDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVV---GKT  353 (423)
Q Consensus       277 iD~gfEl~t~vd~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~---g~~  353 (423)
                      +.+|.|+.-...       ..+.++.+|+.|+.+++.+||||+. ....++++++..|+|.+++++++.-|+.+   +..
T Consensus       196 l~~g~e~~~~~~-------~~~~~~~vg~~y~l~~~~~vkakv~-~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~~~~  267 (276)
T cd07306         196 LAVGAKVTWYSG-------TNETTFAVGGQYALDPDALVKAKVN-NDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGH  267 (276)
T ss_pred             eEEEEEEEEecC-------CCCcEEEEEEEEEcCCCCEEEEEEC-CCceEEEEEEEEcCCCcEEEEEEEeeccCcCCCCC
Confidence            667788876652       3567899999999999999999998 45678999999999999999999999998   999


Q ss_pred             eeeeEEEec
Q 014496          354 SYGFGIRVE  362 (423)
Q Consensus       354 ~yGFgi~VE  362 (423)
                      .||+|+..|
T Consensus       268 K~G~~l~~~  276 (276)
T cd07306         268 KFGLSLSLK  276 (276)
T ss_pred             eEEEEEEeC
Confidence            999999764

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.73  E-value=1.7e-06  Score=81.79  Aligned_cols=264  Identities=15%  Similarity=0.163  Sum_probs=170.5

Q ss_pred             hhHHHHHHHHHHHHHhhccceeeeeecCCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCCceeeeeeccCCc
Q 014496           40 FAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDP  119 (423)
Q Consensus        40 FgKlal~~LF~DYF~~a~~~~~rimLkP~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPhTF~Dl~vSt~~p  119 (423)
                      +||.+.--|-.|||+     -.|+.++=.-.+|+-+..+...-. ..+...|.|+..-++|-.  +=..+.++..+|.+.
T Consensus         5 igk~ardll~~~~~~-----g~k~~v~~~~~~~f~~s~~~~~~~-~~~~~~~~~~~~~k~~~~--~~~~t~~~~~~~dn~   76 (274)
T cd07303           5 LGKSARDLFTKGYGG-----GIKLDVKTKSELEFTSSGSANTET-IESTTKVGGSLETKYRWS--PYGLTFTEKWNTDNT   76 (274)
T ss_pred             hhhhhHHhcccCCCC-----CEEEEEEecCCCccEEcccccccc-cCCCceEEEEEEEeeeec--CCCeEEEEEEEcCCc
Confidence            478888888888885     256666544446765555544322 134667888877777521  223466777777664


Q ss_pred             -eEEEeecc-ccCCcccceeeeeeeeecccCCCCCcceeeeeecccccccceeee---cccccCCCCcceeEEeecccce
Q 014496          120 -VLRIRSST-YYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLM---PFAIKDELPKNAWLVSKMGRLT  194 (423)
Q Consensus       120 -~l~~Rsc~-y~Pkyg~GAFgv~PL~~~~~~~sedygvmGlRYgS~nlS~Ga~~~---Pf~~s~e~pk~aWLV~k~G~lt  194 (423)
                       -+.+|--. ..|..-.=+-.  .+.++   +.+-.+.+..-|-..++++...+-   |..       ...++.---++.
T Consensus        77 ~~~~~~~~~~~~~glk~~~~~--~~~~~---~~~~~~q~~~~y~~~~~~~~l~~~~~gp~v-------~~~~~~g~~~~~  144 (274)
T cd07303          77 LGLEITVEDQLSRGLKSTFDS--SFSPN---TGKKNAKIKTGYKRINLGCDVDFDIAGPLI-------RGALVLGYEGWL  144 (274)
T ss_pred             ceEEEEEecccCCCeEEEEEE--EECCC---CccEEEEEeccEEcCCeeEEEEeecCCCEE-------EEEEEEeecceE
Confidence             34444221 12332222222  22111   122334666677777777776652   222       245555556677


Q ss_pred             eeeeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccccEeeee
Q 014496          195 VGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGIT  274 (423)
Q Consensus       195 aGvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvgIT  274 (423)
                      +|+|.-=..-+       -+..+++|++|..|-     |.|++++.|.....|.+||||++-          ++      
T Consensus       145 ~G~e~~yd~~~-------~~~~~~~~~~y~~~y-----~d~~~s~~l~~~~~l~~Sy~hkvs----------~~------  196 (274)
T cd07303         145 AGYQMVFETVS-------RVTQSNFAVGYKTDY-----NEFQAHTNVNDGTEFGGSIYHKVN----------DK------  196 (274)
T ss_pred             EEEEEEEeccc-------cccccceEEEEEccC-----CCeEEEEEEcCCCeEEEEEEEEcC----------Cc------
Confidence            77775433211       134578999998876     578899998777999999999863          22      


Q ss_pred             eeeeeeeEEEEeeccccccCCCCCcchheeccccccceeEEeeecCCCccceeeeeeccccceeEEEEEEeeecccCcce
Q 014496          275 NYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTS  354 (423)
Q Consensus       275 NYiD~gfEl~t~vd~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~g~~~  354 (423)
                        +.+|-|+....       ...+.++.+|+.++..++-.+|||+-..+-..++--+.| +|-++|++|+.-||.++.-.
T Consensus       197 --~~~g~e~~~~~-------~~~e~~~~vG~~y~l~~~~~vkakids~g~v~~~~~~~l-~~~~~ltls~~~D~~~~~~K  266 (274)
T cd07303         197 --LEVGVNLAATA-------GNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQTL-KPGIKLTLSALLDHKAGGHK  266 (274)
T ss_pred             --eEEEEEEEeec-------cCCccEEEEEEEEecCCCCEEEEEECCCceEEEEEEEEc-CCCcEEEEEEEecCCCCCee
Confidence              34455666543       136678999999999999999999988765444444555 99999999999999999999


Q ss_pred             eeeEEEe
Q 014496          355 YGFGIRV  361 (423)
Q Consensus       355 yGFgi~V  361 (423)
                      +|+|+.+
T Consensus       267 fG~gl~~  273 (274)
T cd07303         267 LGLGLEF  273 (274)
T ss_pred             EEEEEEe
Confidence            9999865

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=98.67  E-value=3.2e-06  Score=79.50  Aligned_cols=243  Identities=14%  Similarity=0.208  Sum_probs=158.2

Q ss_pred             eeeecCCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCC--ceeeeeeccCCc-eEEEeeccccCCcccceee
Q 014496           62 RIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPH--TFMDLFVSNSDP-VLRIRSSTYYPKWGFGAFG  138 (423)
Q Consensus        62 rimLkP~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPh--TF~Dl~vSt~~p-~l~~Rsc~y~Pkyg~GAFg  138 (423)
                      |+++.=--.||+-+..++.--....       -..+++....-+..  +|+|-.|-+.+. -.++. +...|....-+=.
T Consensus        27 r~~~~k~ls~~f~~shs~~lg~~~~-------~~~y~f~a~y~~~~~~~~~~~~id~~g~l~~~~~-~~~~~~~~~k~~~   98 (279)
T cd07305          27 RLDVNKGLSPHFQVSHSLHLGSSSL-------TSSYQFGATYVGDKQYPFLQGDIDNDGNLNARII-HQLGDRLRSKLQA   98 (279)
T ss_pred             EEEEccccCcCeeEEEEEEECCCCC-------CCCcEeeeEEecCCCcEEEEEEeCCCCceeEEEE-eccCcceEEEEEE
Confidence            4444445568888888776442220       22355555445566  888888886664 23333 2233333322222


Q ss_pred             eeeeeecccCCCCCcceeeeeeccccccccee-eecccccCCCCcceeEEee----cccceeee--eeecCCCCCccccc
Q 014496          139 TIPLLMKKRISSEDYGVMGLRYGTGNLSFGAM-LMPFAIKDELPKNAWLVSK----MGRLTVGV--QYEPQYGGKEDAKY  211 (423)
Q Consensus       139 v~PL~~~~~~~sedygvmGlRYgS~nlS~Ga~-~~Pf~~s~e~pk~aWLV~k----~G~ltaGv--Qykp~~g~~~~~~~  211 (423)
                      -++  ..    ......+++-|-....+++.. ..|-...   ..+..-++-    -=+|.+|+  +|..       .+-
T Consensus        99 ~~~--~~----~~~~~q~~~dy~g~d~t~~l~~~n~~~~~---~sg~~~~~ylq~vt~~l~lG~E~~~~~-------~~~  162 (279)
T cd07305          99 QLQ--DS----KFNMSQLELDYRGDDFTASLKLANPDILN---ETGIYVASYLQSVTPKLALGGELVYQR-------VPG  162 (279)
T ss_pred             Eec--CC----CceeEEEEEEEcCCceEEEEEEeCCCccc---ccEEEEEEEEEEccCcEEEEEEEEEEE-------cCC
Confidence            222  11    233357788888887776666 3331100   011111111    11455553  4442       022


Q ss_pred             ccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccccEeeeeeeeeeeeEEEEeecccc
Q 014496          212 KNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAK  291 (423)
Q Consensus       212 ~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvgITNYiD~gfEl~t~vd~~~  291 (423)
                      .....+++|+.|--       +.+++++.|.....+.+||||++                  +.-+++|-|++...    
T Consensus       163 ~~~~~~~~~~rY~~-------~d~~~s~~l~~~~~l~asY~~kv------------------s~~l~lG~el~~~~----  213 (279)
T cd07305         163 NGISVLSYAARYTA-------GNWIASGQLGAQGGLHLSYYRKL------------------SDKLQLGVELELNL----  213 (279)
T ss_pred             CCceeEEEEEEEcc-------CCEEEEEEEcCCCeEEEEEEEEc------------------ccceEeeeeeeecc----
Confidence            35666889999965       57799999999899999999953                  33577888888764    


Q ss_pred             ccCCCCCcchheeccccccceeEEeeecCCCccceeeeeeccccceeEEEEEEeeecccCcceeeeEEEec
Q 014496          292 TANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVE  362 (423)
Q Consensus       292 ~~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~g~~~yGFgi~VE  362 (423)
                         ...++.+.+|+.|+.. +..+||++...+...++--|.| +|.++|++|++.||.++...+|+|+.+|
T Consensus       214 ---~~~es~~tvg~~y~~~-~~~~k~~ids~g~v~~~~e~~l-~~~~~l~ls~~~d~~~~~~kfG~gl~i~  279 (279)
T cd07305         214 ---RTRESTATLGYQYDFR-QSRFRGSIDSNGKVSAVLEKRL-PLPLSLLLSGELNHVKNDYKFGFGLTIG  279 (279)
T ss_pred             ---cCCceeEEEEEEEEcC-CCEEEEEEcCCCEEEEEEEEec-CCCeEEEEEEEEcccCCcceEEEEEEeC
Confidence               2466778999999988 9999999999887777777887 9999999999999999999999999875

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=98.11  E-value=0.00013  Score=65.87  Aligned_cols=167  Identities=17%  Similarity=0.277  Sum_probs=117.4

Q ss_pred             CcceeeeeecccccccceeeecccccCCCCcceeEEeecc-cceeeeeeecCCCCCcccccccccCcceeeeeccCCCCC
Q 014496          152 DYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMG-RLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSP  230 (423)
Q Consensus       152 dygvmGlRYgS~nlS~Ga~~~Pf~~s~e~pk~aWLV~k~G-~ltaGvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SP  230 (423)
                      .-..+++.|...++++.+.+.- .. .-+-...++.+ .+ ++.+|+|..=....      .++..|+.+++|.-+=+  
T Consensus       105 ~~~~l~~~y~~~~~~~~~~~~~-~~-~~~~~~s~~~~-v~~~~~lG~e~~~~~~~------~~~~~~~~~~~~~~~Y~--  173 (273)
T PF01459_consen  105 KSAQLEADYKGDDFNATFKVDN-DN-NPIFNASYVQS-VTPNLALGAEATYDLSS------GKSSKYNAGLSYAARYT--  173 (273)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEE-ST-S-EEEEEEEEE-ET-TEEEEEEEEEETTT------TCEEEEEEEEEEEET----
T ss_pred             eeeEEEEEEecCCEEEEEEEcc-cC-CCcEEEEEEEe-ccccEEEEEEEEEeccc------CCcCcceEEEEEecccc--
Confidence            5568899999998888877764 21 11222233443 45 88999887644333      23445888888887633  


Q ss_pred             CCccceeeeeee-cccchhhhhHHHhhhhhhhcCCCccccEeeeeeeeeeeeEEEEeeccccccCCCCCcchheeccccc
Q 014496          231 LSPSFNFGLELA-KSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQA  309 (423)
Q Consensus       231 LsPSFnf~lEL~-~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvgITNYiD~gfEl~t~vd~~~~~~~~~~~~~q~aASWQa  309 (423)
                       .|.+.+++.+. ...++.+||||.                  +...+++|-|++.....       ..+.+.+|+.|+.
T Consensus       174 -~~~~~~~~~~~~~~~~l~~sy~~k------------------~~~~~~~g~e~~~~~~~-------~~~~~~vG~~~~l  227 (273)
T PF01459_consen  174 -HPDYTASATLSNNFGTLTASYFQK------------------VNDKLQLGAELTYNLSS-------RESTFTVGYQYKL  227 (273)
T ss_dssp             ---TEEEEEEE-ETTTEEEEEEEEE------------------SSTTEEEEEEEEEETTC-------CEEEEEEEEEEEE
T ss_pred             -ceeEEEEEEEcCCCCEEEEEEEEE------------------eccceeeeeeeeecccC-------CCceEEEEEEEEc
Confidence             45679999994 688999999973                  34566778888876644       3677899999999


Q ss_pred             cceeEEeeecCCCccceeeeeeccccceeEEEEEEeeecccCcceeeeE
Q 014496          310 NKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFG  358 (423)
Q Consensus       310 NKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~g~~~yGFg  358 (423)
                      ++.=.+|||+-..+...++-=+.| .|-++|++|+.-||.+.  .|=||
T Consensus       228 ~~~~~vk~kvds~g~v~~~~~~~l-~~~~~l~ls~~~d~~~~--~~KfG  273 (273)
T PF01459_consen  228 DDSSTVKAKVDSNGRVSASYEQKL-NPGVTLTLSAELDHKNN--NHKFG  273 (273)
T ss_dssp             CTTEEEEEEEETTSEEEEEEEEEE-CTTEEEEEEEEECTT-C---EEEE
T ss_pred             CcccEEEEEEcCCCEEEEEEEEec-CCCcEEEEEEEEccCCC--CCCcC
Confidence            999999999998876555544444 99999999999999988  44444

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=97.80  E-value=0.003  Score=62.20  Aligned_cols=263  Identities=17%  Similarity=0.268  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHHHHhhccceeeeeecCCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCCceeeeeeccCCc-
Q 014496           41 AKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSDP-  119 (423)
Q Consensus        41 gKlal~~LF~DYF~~a~~~~~rimLkP~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPhTF~Dl~vSt~~p-  119 (423)
                      ||+|.-+|-+||.  -+....-.+.+.-.  =|-+..+=+.   .-....+.|+...+.+  ..+-....|+..+|.+- 
T Consensus        11 gK~ArDl~~kgy~--~g~~~~~~~t~t~~--gv~ftssg~~---~~~~~~v~gsle~k~~--~~~~glt~t~kw~Tdn~L   81 (281)
T KOG3126|consen   11 GKLARDLFNKGYG--FGLWKLDLKTKTES--GVEFTSSGSV---NTDTGKVKGSLETKYK--DKDYGLTLTEKWNTDNTL   81 (281)
T ss_pred             hhHHHHHhhCCCC--CCcEEEEEEeeccC--cEEEEeeecc---ccceeeeeeeeEEEEe--eccCceEEEEEeecCCcc
Confidence            8999999999998  44444444455544  2222222222   2234566677666554  13445667777777773 


Q ss_pred             --eEEEeeccccCCcccceeeeeeeeecccCCCCCcceeeeeecccccccceeeecccccCCCCcceeEEeecccceeee
Q 014496          120 --VLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGV  197 (423)
Q Consensus       120 --~l~~Rsc~y~Pkyg~GAFgv~PL~~~~~~~sedygvmGlRYgS~nlS~Ga~~~Pf~~s~e~pk~aWLV~k~G~ltaGv  197 (423)
                        .+.+|- -..|..=+..=..||-     ....--|.+-+.|.-....+++. +++.. +.+-.+.--+++.| +-+|.
T Consensus        82 ~t~I~~~~-~~~pglk~~~~~s~~p-----~~~~ks~Klk~~y~~~~~~~~~~-~~~~~-~P~i~~s~v~g~~g-~l~G~  152 (281)
T KOG3126|consen   82 GTEITVED-QLAPGLKLTLDSSFSP-----NTGKKSGKLKLSYARDHFNLGAD-DFLTA-NPLILGSLVLGHEG-WLLGY  152 (281)
T ss_pred             ceEEEEcc-ccCCceEEEEEEeecC-----cccccceeeecccccccceeeec-ccccc-CCeEEEEEEecccc-eEEEE
Confidence              223322 1123322222222222     22233456666677677777764 44432 22223333344444 44555


Q ss_pred             eeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccccEeeeeeee
Q 014496          198 QYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYI  277 (423)
Q Consensus       198 Qykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvgITNYi  277 (423)
                      |+.=-..      =.++..|+.|+||-       ++.+.+++.+-..+.+++|+|||+.      +++|    +|+.   
T Consensus       153 ~~~fDt~------~~~~t~~n~~lgy~-------~~d~~l~~~~nn~~~~~~s~yq~v~------~~~~----~~~~---  206 (281)
T KOG3126|consen  153 ETTFDTA------SGKLTKYNAALGYT-------TEDFTLHLNLNNGTEFLASIYQRVN------EKLE----TGAN---  206 (281)
T ss_pred             eEEEecc------CCcEeeEEEEEEee-------cCCcEEEEEecccchhhhhhhhhhc------chhe----eeee---
Confidence            5443222      23466789999885       4556899999888889999999864      2221    2221   


Q ss_pred             eeeeEEEEeeccccccCCCCCcchheeccccccceeEEeeecCCCccceeeeeeccccceeEEEEEEeeeccc---Ccce
Q 014496          278 DFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVV---GKTS  354 (423)
Q Consensus       278 D~gfEl~t~vd~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~---g~~~  354 (423)
                         .|.....         ++.+|-+|..++...--.|||||- .+|-++++++.=|+|-.++.+++..|-..   + ..
T Consensus       207 ---~~~~~~~---------~~~~~~igt~Y~lD~~t~VkAKVn-n~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~-hK  272 (281)
T KOG3126|consen  207 ---AEWIAGS---------SNTRFTIGTKYALDPDTSVKAKVN-NAGLAGLGYQQTLRPGIKVTLSAEFDGKALDAG-HK  272 (281)
T ss_pred             ---EEEeecC---------CccEEEEEEEeccCCCceeeeeec-CCceeeEEEEEecCCCcEEEEEEEEeccCCCCC-cc
Confidence               2222221         277899999999999999999995 46789999999999999999999999776   4 56


Q ss_pred             eeeEEEe
Q 014496          355 YGFGIRV  361 (423)
Q Consensus       355 yGFgi~V  361 (423)
                      .|.++..
T Consensus       273 ~Glsl~~  279 (281)
T KOG3126|consen  273 FGLSLAL  279 (281)
T ss_pred             eeEEEee
Confidence            7777654

>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation

Probab=90.20  E-value=13  Score=33.26  Aligned_cols=63  Identities=32%  Similarity=0.309  Sum_probs=38.4

Q ss_pred             eeeecc--cccccceeeecccccCCCCcceeEEeecccceeeeeeecCCCCCcccccccccCcceeeeec----cCCCCC
Q 014496          157 GLRYGT--GNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYG----VGSGSP  230 (423)
Q Consensus       157 GlRYgS--~nlS~Ga~~~Pf~~s~e~pk~aWLV~k~G~ltaGvQykp~~g~~~~~~~~~l~nws~A~~YG----VGs~SP  230 (423)
                      -+||+-  +|+.+....-....+  ....   .+-+|.+++|+.|......+         +|+.++.++    .|+-++
T Consensus        47 ~l~yg~~~~~~~l~~~~~~~~~~--~~~~---~sG~gD~~l~~~~~~~~~~~---------~~~~~~~~~~~~PtG~~~~  112 (248)
T PF13557_consen   47 ILPYGLSSDNLELRLNGPYVWGS--GSGS---ASGFGDITLGAKYRLWDNPK---------NPSLALGLGVTLPTGSYDP  112 (248)
T ss_pred             EEeeEEEEEEEEEEEecccceec--cCCC---CCCcccceeeeeeeeecCCC---------CcEEEEEEEEEeecCcccc
Confidence            367776  378877664333222  1111   23689999999887763332         788888888    466666


Q ss_pred             CCc
Q 014496          231 LSP  233 (423)
Q Consensus       231 LsP  233 (423)
                      ..+
T Consensus       113 ~~~  115 (248)
T PF13557_consen  113 GDP  115 (248)
T ss_pred             ccc
Confidence            554

>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane

Probab=85.98  E-value=24  Score=32.61  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             cceeEEeeccc-ceeeeeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeee--cccchhhhhHHHhhhh
Q 014496          182 KNAWLVSKMGR-LTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELA--KSSVFIASFYQHVVVQ  258 (423)
Q Consensus       182 k~aWLV~k~G~-ltaGvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~--~ssq~iaSFyqH~vVQ  258 (423)
                      ..+-..+.... ++++++|.+......   -++-..|..++.|-.+   +|    .+.+-..  +...-...        
T Consensus       131 ~~i~Y~~~~~~G~~~~~~y~~~~~~~~---~~~~~~~~~~~~Y~~~---~~----~l~a~y~~~~~~~~~~~--------  192 (329)
T cd00342         131 NSVKYTSPFFGGLTFGAMYAFGNQAGS---TSNGRGYGAGLSYENG---PL----SLGAAYDQQRNGGGAAG--------  192 (329)
T ss_pred             ceEEEeCCCcCCEEEEEEEECCCCCCC---CCCCceEEEEEEEccC---CE----EEEEEEEEeeCCCcccc--------
Confidence            33444444433 888888887632211   1334558899999765   33    3333222  21110000        


Q ss_pred             hhhcCCCccccEeeeeeeeee-eeEEEEeecccccc-----CCCCCcchheeccccccceeEEeeecC
Q 014496          259 RRVKNPLEEDEIVGITNYIDF-GFELQTRIDDAKTA-----NSIPESSFQVAASWQANKNFLLKGKVG  320 (423)
Q Consensus       259 RrvkNP~Ee~~vvgITNYiD~-gfEl~t~vd~~~~~-----~~~~~~~~q~aASWQaNKNfLlKgK~G  320 (423)
                        ..+.-++.+..++.--.++ +|.+.......+..     .......+.++++|+.++++.+.+-.+
T Consensus       193 --~~~~~~~~~~~~~ga~Y~~~~~~v~a~y~~~~~~~~~~~~~~~~~~~~lga~Y~~~~~~~~~~~y~  258 (329)
T cd00342         193 --GAAGATSQRAYGAGASYDFGGLKLGAGYTNTRNDNGGGGGSAKFNGYELGATYQLTPALRLGAAYY  258 (329)
T ss_pred             --cccccceEEEEEEEEEEEEccEEEEEEEEEEEccCCCCCCceEEEEEEEeEEEEcCCceEEEEEEE
Confidence              0112333444443322222 24443332222211     122334588999999999888877554

Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.85  E-value=1.9  Score=43.53  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=43.0

Q ss_pred             cceeEEeeecCCCccceeeeeeccccceeEEEEEEeeecccCcceeeeEEEec
Q 014496          310 NKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVE  362 (423)
Q Consensus       310 NKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~g~~~yGFgi~VE  362 (423)
                      +.|-.++|++-+..+..++--|.= .+-+||.+||+-||.+-...+|||+.++
T Consensus       257 ~~~s~~rg~vDSn~~v~~~lek~L-~l~l~~~ls~~lnh~k~~~~~G~gl~~~  308 (308)
T KOG3296|consen  257 TAQSVFRGSVDSNWSVGAVLEKKL-PLPLTLALSAELNHVKNDFKFGFGLTIG  308 (308)
T ss_pred             CccceEEEEeccCceehhhhHhhc-CCCceeeeeeeecccccccccceeEEeC
Confidence            346788999998866655555555 8889999999999999999999999764

>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A

Probab=82.32  E-value=2.3  Score=38.59  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=42.0

Q ss_pred             eeeeeeccc--ccccceeeecccccCCCCcceeEEe---ecccceeeeeeecCCCCCcccccccccCcceeeeeccCC
Q 014496          155 VMGLRYGTG--NLSFGAMLMPFAIKDELPKNAWLVS---KMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGS  227 (423)
Q Consensus       155 vmGlRYgS~--nlS~Ga~~~Pf~~s~e~pk~aWLV~---k~G~ltaGvQykp~~g~~~~~~~~~l~nws~A~~YGVGs  227 (423)
                      .+|+.|..+  ++++++...-...... ....|.++   +.|.+++++.|.-..+ ++...-.+...|...++|-+|.
T Consensus       187 ~~~~~Y~~~~~~~~~~~~y~~~~~~~~-~~~~~~~ga~y~~~~~~l~a~y~~~~~-~~~~~~~~~~~~~~~~~Y~~~~  262 (311)
T PF13609_consen  187 GAGASYSFGGFGLTVAAGYSSADDNGG-DNDAWGVGASYNFGGFTLGAEYGQADN-DGSGGDSDQDAYYVGAAYTFGK  262 (311)
T ss_dssp             EEEEEEEET-SSEEEEEEEEEEECCET-CEEEEEEEEEEECSSEEEEEEEEEEEE-ECCCCCEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEcCCcceEEEeeeecccccch-heeeEEeeEEEEECcEEEEEEEEEEEe-cCccccccceEEEEEEEEEeCC
Confidence            567778755  6777777664332221 44667766   5677888888873211 1111125666677777777743

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3emn_X	295	Voltage-dependent anion-selective channel protein;	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 47/409 (11%), Positives = 119/409 (29%), Gaps = 89/409 (21%)

Query: 21  DFPPLAARTRMLESSYNMLFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVS 80
           D P        ++       A      LF       +    +  ++ +   +   + +  
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMS-- 96

Query: 81  GPLDHKPEENIVGNALFRWQRE--LDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFG 138
            P+  +  +  +   ++  QR+   +D   F    VS   P L++R +            
Sbjct: 97  -PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------------ 143

Query: 139 TIPLLMKKRISSED---YGVMGLRYGTGNLSFGAM-LMPFAIKDELPKNA-WLVSKMGRL 193
               L++ R  +++    G +    G+G         + + ++ ++     W       L
Sbjct: 144 ----LLELR-PAKNVLIDG-VL---GSGKTWVALDVCLSYKVQCKMDFKIFW-------L 187

Query: 194 TVGVQYEPQYGGKEDAKYKNLMNWSYAIG--YGVGSGSPLSPSFNFG-LELAKSSVFIAS 250
            +     P      +   + L    Y I   +   S    +       ++     +  + 
Sbjct: 188 NLKNCNSP------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 251 FYQHV-VVQRRVKNPLEEDEIV----------------GITNYIDFGFELQTRIDDAKTA 293
            Y++  +V   V+N     +                   +T+++         +D     
Sbjct: 242 PYENCLLVLLNVQNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 294 NSIPESSFQVAASWQANKNFLLKG---KVGPLSSSVAMAFKSWWKPSFTFSISATKDRV- 349
            +  E    +   +   +   L        P   S+          ++        D++ 
Sbjct: 298 LTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 350 -VGKTSYGFGIRVENLREASYQRADPNFVMLT--PSKEHLAE---GMVW 392
            + ++S      +  L  A Y++    F  L+  P   H+      ++W
Sbjct: 357 TIIESS------LNVLEPAEYRK---MFDRLSVFPPSAHIPTILLSLIW 396

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 44/279 (15%), Positives = 84/279 (30%), Gaps = 83/279 (29%)

Query: 39  LFAKLALKCLFDDYFEEARHFSTRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFR 98
           L  K  L C   D   E    +      P     + +IA     +               
Sbjct: 306 LLLK-YLDCRPQDLPREVLTTN------PR---RLSIIAES---IRDGLA---------T 343

Query: 99  WQR----ELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAF--------GTIPLLMKK 146
           W        D   T ++  ++  +P    R    +       F          + L+   
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAE-YRK--MF--DRLSVFPPSAHIPTILLSLIWFD 398

Query: 147 RISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLV---SKMGRLTV-GVQYEPQ 202
            I S+   V+                     ++L K + LV    K   +++  +  E +
Sbjct: 399 VIKSDVMVVV---------------------NKLHKYS-LVEKQPKESTISIPSIYLELK 436

Query: 203 YGGKED-AKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRV 261
              + + A ++++++  Y I     S   L P +               FY H+     +
Sbjct: 437 VKLENEYALHRSIVD-HYNIPKTFDSDD-LIPPYLDQY-----------FYSHIG--HHL 481

Query: 262 KNPLEEDEIVGITN-YIDFGFELQTRIDDAKTANSIPES 299
           KN    + +      ++DF F L+ +I    TA +   S
Sbjct: 482 KNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGS 519

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 42/183 (22%)

Query: 183 NAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELA 242
              LV        G  Y+  +    +     +   ++A+GY        +  F     + 
Sbjct: 151 RGALVLGYEGWLAG--YQMNF----ETSKSRVTQSNFAVGYK-------TDEFQLHTNVN 197

Query: 243 KSSVFIASFYQHVVVQRRVKNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQ 302
             + F  S YQ V                     ++    L     ++ T        F 
Sbjct: 198 DGTEFGGSIYQKV------------------NKKLETAVNLAWTAGNSNT-------RFG 232

Query: 303 VAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISA---TKDRVVGKTSYGFGI 359
           +AA +Q + +     KV   SS + + +    KP    ++SA    K+   G    G G+
Sbjct: 233 IAAKYQVDPDACFSAKVNN-SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGL 291

Query: 360 RVE 362
             +
Sbjct: 292 EFQ 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.77

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.77  E-value=5.2e-07  Score=85.50  Aligned_cols=266  Identities=16%  Similarity=0.256  Sum_probs=171.4

Q ss_pred             hhHHHHHHHHHHHHHhhccce-eeeeecCCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCCceeeeeeccCC
Q 014496           40 FAKLALKCLFDDYFEEARHFS-TRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSD  118 (423)
Q Consensus        40 FgKlal~~LF~DYF~~a~~~~-~rimLkP~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPhTF~Dl~vSt~~  118 (423)
                      .||.|.-+|..||     |+. ..+-+|=--.--|-+.++-+.-.|   .+.+.|+..-++.-  .+-..=+|..++|.+
T Consensus        22 igK~AkDll~kdy-----~~~~~kl~~kt~s~~gv~ft~~g~~~~~---~~~v~g~le~kyk~--~~~g~t~~~kw~t~n   91 (295)
T 3emn_X           22 LGKSARDVFTKGY-----GFGLIKLDLKTKSENGLEFTSSGSANTE---TTKVNGSLETKYRW--TEYGLTFTEKWNTDN   91 (295)
T ss_dssp             TTHHHHHHHHTTC-----CTTEEEEEEECCCSSEEEEEEEEEEETT---TCCEEEEEEEEEEE--TTTTEEEEEEEETTS
T ss_pred             cccchHHhccCCc-----CCCCEEEEEEEEcCCCEEEEEEEEecCC---CCceeeEEEEEEEe--cCCcEEEEEEEeCCC
Confidence            4899999999998     344 345565544444666655443322   36788888776642  222234466888877


Q ss_pred             c---eEEEeeccccCCcccceeeeeeeeecccCCCCCcceeeeeecccccccceeeecccccCCCCcceeEEeeccccee
Q 014496          119 P---VLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTV  195 (423)
Q Consensus       119 p---~l~~Rsc~y~Pkyg~GAFgv~PL~~~~~~~sedygvmGlRYgS~nlS~Ga~~~Pf~~s~e~pk~aWLV~k~G~lta  195 (423)
                      -   .+.++-.. -|  |+=+-.-.-+.+.   .....+.+.+.|-.+++.+.+.+. +...+-+ -...+|-.--.+.+
T Consensus        92 ~l~t~i~~~~~l-~~--Glk~~~~~~~~P~---~~~ks~kl~~~Y~~~~~~~~~~v~-l~~~~P~-i~~s~v~g~~~~~~  163 (295)
T 3emn_X           92 TLGTEITVEDQL-AR--GLKLTFDSSFSPN---TGKKNAKIKTGYKREHINLGCDVD-FDIAGPS-IRGALVLGYEGWLA  163 (295)
T ss_dssp             CEEEEEEEESSS-ST--TEEEEEEEEEETT---TTEEEEEEEEEEEETTEEEEEEEE-ECTTCCE-EEEEEEEEETTEEE
T ss_pred             cEEEEEEEcccc-CC--ceEEEEEEEECCC---CCCcceEEEEEEEcCCEeEEEEEE-eccCCCE-EEEEEEEeeCCEEE
Confidence            5   23344311 12  2211111111111   113467999999999999877763 1000100 11222222345777


Q ss_pred             eeeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccccEeeeee
Q 014496          196 GVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITN  275 (423)
Q Consensus       196 GvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvgITN  275 (423)
                      |.|..=...      -.++..|++|++|-       .|.|.+++.+...+.|.+||||.+       ||   +       
T Consensus       164 G~e~~yd~~------~~~~t~~n~~~gY~-------~~d~~~s~~l~~~~~~~aSy~qkv-------s~---~-------  213 (295)
T 3emn_X          164 GYQMNFETS------KSRVTQSNFAVGYK-------TDEFQLHTNVNDGTEFGGSIYQKV-------NK---K-------  213 (295)
T ss_dssp             EEEEEEETT------TTEEEEEEEEEEEE-------CSSEEEEEEEETTTEEEEEEEEEC-------SS---S-------
T ss_pred             EEEEEEEeC------CCCeeeEEEEEEEc-------CCCEEEEEEECCCCeEEEEEEEEC-------CC---c-------
Confidence            776443321      12356699999994       357899999988889999999875       33   1       


Q ss_pred             eeeeeeEEEEeeccccccCCCCCcchheeccccccceeEEeeecCCCccceeeeeeccccceeEEEEEEeeeccc---Cc
Q 014496          276 YIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVV---GK  352 (423)
Q Consensus       276 YiD~gfEl~t~vd~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~---g~  352 (423)
                       +..|-|+......       .+.+|.+|+.|+.+++..+|||+-..+- +++++..=|+|-++|++++.-||.+   +.
T Consensus       214 -~~~g~e~~~~~~~-------~~~~~tvG~ky~ld~~~~vKakvn~~g~-v~~~y~~kl~p~v~ltls~~iD~~~l~~~~  284 (295)
T 3emn_X          214 -LETAVNLAWTAGN-------SNTRFGIAAKYQVDPDACFSAKVNNSSL-IGLGYTQTLKPGIKLTLSALLDGKNVNAGG  284 (295)
T ss_dssp             -EEEEEEEEEETTE-------EEEEEEEEEEECCSSSEEEEEEEETTSE-EEEEEEEEEETTEEEEEEEEEESSCTTTSC
T ss_pred             -eEEEEEEEEeccC-------CCcEEEEEEEEEcCCCCEEEEEECCCCE-EEEEEEEecCCCcEEEEEEEECccccCCCC
Confidence             3455677654422       4677999999999999999999988754 6777777778999999999999986   89


Q ss_pred             ceeeeEEEec
Q 014496          353 TSYGFGIRVE  362 (423)
Q Consensus       353 ~~yGFgi~VE  362 (423)
                      ..+|+|+.+|
T Consensus       285 ~K~Gl~l~l~  294 (295)
T 3emn_X          285 HKLGLGLEFQ  294 (295)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEEEEe
Confidence            9999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d3prna_	289	Porin {Rhodopseudomonas blastica, strain DSM2131 [	87.72

>d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]

Probab=87.72  E-value=5.7  Score=31.85  Aligned_cols=152  Identities=7%  Similarity=0.059  Sum_probs=86.9

Q ss_pred             cceeEEeecccceeeeeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhh
Q 014496          182 KNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRV  261 (423)
Q Consensus       182 k~aWLV~k~G~ltaGvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrv  261 (423)
                      .-+..--++|.++++++|.+-.....  --.+-+.|+.++.|.-|   |+    ..+..-.+..                
T Consensus       131 ~i~y~sp~~~Gf~~~~~y~~~~~~~~--~~~~~~~~~~~~~y~~~---~~----~~~~~y~~~~----------------  185 (289)
T d3prna_         131 NGIAVTYSISGVNLYLSYVDPDQTVD--SSLVTEEFGIAADWSND---MI----SLAAAYTTDA----------------  185 (289)
T ss_dssp             EEEEEEEECSSEEEEEEEEETTTTSC--GGGSCCEEEEEEEEECS---SE----EEEEEEEESG----------------
T ss_pred             cEEEeccccCCEEEEEEEeccCCccc--cccccceeEEEEEccCC---cc----eeeeeeeecc----------------
Confidence            44556677999999999998643321  12333557777777533   22    3333332221                


Q ss_pred             cCCCccccEeeeeeeeeeeeEEEEeeccccccCCCCCcchheeccccccceeEEeeecCC-----Cccceeeeeeccccc
Q 014496          262 KNPLEEDEIVGITNYIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGP-----LSSSVAMAFKSWWKP  336 (423)
Q Consensus       262 kNP~Ee~~vvgITNYiD~gfEl~t~vd~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G~-----~~ss~alafksWw~P  336 (423)
                       ++-.+....++.....|+.-...-.-............+.++++|++++ +.|++-++-     ...+.+|+..=.+-|
T Consensus       186 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~-~~~~~~y~~~~~~~~~~~~~lg~~Y~ls~  263 (289)
T d3prna_         186 -GGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGA-TTVRAYVSDIDRAGADTAYGIGADYQFAE  263 (289)
T ss_dssp             -GGCTTCCEEEEEEEECCSSSEEEEEEEEECTTSTTCSEEEEEEEEEETT-EEEEEEEEEECSTTCCCEEEEEEEEEEET
T ss_pred             -CCccccccceeeeeeeecceeEEEEEEEeeccCccceEEEEEEEEEeCC-EEEEEEEeecCCCCcccEEEEEEEEEcCC
Confidence             2233444445555555554443222222233344566799999999997 677776553     334566777777777


Q ss_pred             eeEEEEEEeeecccCcceeeeEEEe
Q 014496          337 SFTFSISATKDRVVGKTSYGFGIRV  361 (423)
Q Consensus       337 SfTfs~sA~~D~~~g~~~yGFgi~V  361 (423)
                      ..++.+...++.. ..+.-.+|+|.
T Consensus       264 ~~~l~a~~~~~~~-~~~~a~~Gv~~  287 (289)
T d3prna_         264 GVKVSGSVQSGFA-NETVADVGVRF  287 (289)
T ss_dssp             TEEEEEEEEECTT-CCEEEEEEEEE
T ss_pred             CeEEEEEEEEEeC-CCceEeeeeEE
Confidence            7777766665554 34445566653